The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
36
|
sequence length |
127
|
structure length |
127
|
Chain Sequence |
GYNPPGDGACGYRCLAFMNGATVVSAGCSSDLWCDDELAYRVFQLSPTFTVTIPGGRVCPNAKYAMICDKQHWRVKRAKGVGLCLDESCFRGICNCQRMSGPPPAPVSAAVLDHILEAATFGNVRVV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Deubiquitinase function of arterivirus papain-like protease 2 suppresses the innate immune response in infected host cells.
pubmed doi rcsb |
| molecule tags |
Hydrolase/protein binding
|
| source organism |
Equine arteritis virus
|
| molecule keywords |
papain-like protease 2
|
| total genus |
36
|
| structure length |
127
|
| sequence length |
127
|
| ec nomenclature |
ec
2.7.7.48: RNA-directed RNA polymerase. |
| pdb deposition date | 2013-01-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05412 | Peptidase_C33 | Equine arterivirus Nsp2-type cysteine proteinase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Cathepsin B; Chain A | Cathepsin B; Chain A |
#chains in the Genus database with same CATH superfamily 4IUM A; #chains in the Genus database with same CATH topology 2BTW B; 2HD5 A; 4FK5 A; 1A6R A; 1U9V A; 1BP4 A; 3PHW A; 3P5U A; 4N4Z A; 2O6X A; 4MM3 B; 4YYU A; 4P6E A; 4RF1 A; 2PNS A; 3O65 A; 4RY2 A; 4MI7 A; 3H8B A; 1MDW A; 4BOS A; 2R9O A; 4BOP A; 2OP3 A; 3PHX A; 3I3T A; 1JQP A; 2HHN A; 3USV A; 3K8U A; 2BDL A; 2FRQ A; 3MHS A; 1MIR A; 3IEJ A; 1DKI A; 4PAD A; 5CVM A; 3HHA A; 3KFQ A; 2FUD A; 2CB5 A; 1NL6 A; 2F1G A; 1EF7 A; 3N3K A; 1CQD A; 3H7D A; 3P5X A; 2GHU A; 1F29 A; 4PP1 A; 1ICF A; 3BOW A; 4D8I A; 1YAL A; 1CPJ A; 4YYS A; 3ZUA A; 3RVV A; 2DJG B; 5J94 A; 3O0U A; 1BGO A; 1Y4H A; 4RNA A; 2DCC A; 2Y6E A; 6PAD A; 3KW9 A; 4DMX A; 2Y5B A; 3BB7 A; 2ARY A; 4ZTB A; 4G54 A; 3PDF A; 4Q8G A; 2JQF R; 3WXE A; 2DC6 A; 2R9C A; 1FH0 A; 1POP A; 2YJB A; 3N4C A; 2YJC A; 3V6C A; 3K9M A; 2NQD B; 1VJV A; 5EZS A; 3F5V A; 4QBB A; 4CDF B; 3GCB A; 3PW3 A; 5JZE A; 1PE6 A; 3RVW A; 1MS6 A; 3PBH A; 3OF8 A; 2HH5 A; 4D8B A; 4P6G A; 1AU3 A; 1AYW A; 2BDZ A; 2G7Y A; 8PCH A; 4W5C A; 1YVB A; 1ITO A; 1AU0 A; 1IWD A; 2HXZ A; 3LXS A; 2XU5 A; 4R3D A; 3OVZ A; 4BS6 A; 4YYW A; 3PHU A; 3CBJ A; 3HD3 A; 1NB5 A; 5K16 A; 2E01 A; 3IV2 A; 4WUR A; 1Q6K A; 1ZCM A; 4OVZ A; 3WXF A; 1ATK A; 4IP3 A; 2AU1 A; 4XZX A; 4MSX A; 2E03 A; 2G8J A; 1KFX L; 4MZO A; 1YZB A; 1AU4 A; 2J7Q C; 3PNR A; 1ME3 A; 4W4U A; 2DCD A; 1SNK A; 2CIO A; 4QRX A; 2FT2 A; 2PAD A; 1PPP A; 2C0Y A; 1U9Q X; 1PPO A; 2Z84 A; 1U5I A; 3HWN A; 1CVZ A; 2H7J A; 4CZW A; 2NQI A; 2NQA A; 2FQ9 A; 1YK8 A; 5JA7 A; 4YYR A; 4YYQ A; 3MOR A; 1EWP A; 4QRV A; 1TL9 A; 3B21 A; 3CH3 X; 3E1Z B; 1AYV A; 1GMY A; 3M99 A; 4IUM A; 1SP4 B; 1AYU A; 3OQC A; 3H6S A; 3KSE A; 4MZS A; 4RF0 A; 4BPV A; 3B79 A; 1F2B A; 5F02 A; 1GCB A; 1CTE A; 3NHE A; 2R9M A; 4BS5 A; 2FE8 A; 1BQI A; 4W5B A; 2BU3 A; 4OVZ B; 1YK7 A; 2DOS A; 5CHT A; 1PIP A; 3BPM A; 3RVX A; 2YJ2 A; 1AIM A; 3QSD A; 4I05 A; 5A24 A; 4CDC B; 4CDE B; 3OVX A; 2R9F A; 3MHH A; 3U8E A; 4X6J A; 1QXP A; 1VSN A; 3BPF A; 5EF4 A; 1KFU L; 3CH2 X; 1TU6 A; 2AYO A; 1PPN A; 3V6E A; 4K7C A; 2G6D A; 3BCN A; 3IMA A; 2DJF B; 2PRE A; 4I04 A; 3TNX A; 3BY4 A; 1PXV A; 1EWO A; 3IOQ A; 2P0R A; 2AVW A; 4OW0 A; 5JH3 A; 3KWB X; 5CVO B; 2BTW A; 1XKG A; 1EWM A; 1PAD A; 2VHF A; 2UZJ A; 5EGW A; 1ZIV A; 4PI3 A; 9PAP A; 3QT4 A; 3S3R A; 4BSQ A; 4YYV A; 3HHI A; 7PCK A; 1CJL A; 1PPD A; 1F2C A; 2DC8 A; 3N3G A; 4N8W A; 4HWY A; 3QJ3 A; 1PBH A; 1QDQ A; 3W31 A; 4N79 A; 1X9Y A; 1AU2 A; 4GUA A; 1NB3 A; 1GLO A; 3MJ5 A; 2R9N A; 3K24 A; 4YV8 A; 1CV8 A; 3MTN A; 1PCI A; 3C0R A; 3IFU A; 2DC9 A; 4BOZ A; 4HXD B; 4M0W A; 4QH6 A; 3KX1 A; 3I06 A; 3ERV A; 1NLJ A; 4XR7 A; 3ZNH A; 1CSB B; 3KKU A; 3D6S A; 2AUZ A; 2FRA A; 4KLB A; 3PRM A; 3DF0 A; 1UKF A; 1QMY A; 2P7U A; 1BY8 A; 2F7D A; 4YVA A; 2E02 A; 5KO3 A; 3PRP A; 1MEM A; 4XUI A; 1DF0 A; 3MP2 A; 4AXL A; 1U9W A; 2IBI A; 2J7Q A; 1PVJ A; 2FYE A; 1NQC A; 2OZ2 A; 2HWK A; 2B1M A; 3E9S A; 2G8E A; 2DCB A; 4CDD B; 4D8E A; 2JRI A; 1CS8 A; 3WXG A; 5E6J A; 1DEU A; 3OF9 A; 1U9X A; 2B1N A; 1S4V A; 3IHP A; 1AEC A; 3MTV A; 4X6H A; 4FJC A; 3IUT A; 1EWL A; 1HUC B; 5PAD A; 1O0E A; 2R6N A; 2DCA A; 3BBA A; 2AYN A; 1NPZ A; 4Q8H A; 4BOQ A; 2AUX A; 4WA6 A; 4P16 A; 4RKX A; 3P5V A; 3F75 A; 2E00 A; 2XU3 A; 2AS8 A; 2ACT A; 5CVN B; 2JTC A; 4PT5 A; 4AXM A; 2XU4 A; 2NQG A; 1QOL A; 2GFO A; 4OEL A; 4BOU A; 2PBH A; 4X6I A; 3AI8 A; 3RNV A; 4DMY A; 2YJ8 A; 4BQV A; 2WBF X; 4ZUX U; 1MHW A; 1MEG A; 3CBK A; 2OUL A; 3TRK A; 5CHV A; 3W30 A; 2IPP B; 2FTD A; 1THE A; 4FIP A; 1F2A A; 1KHP A; 1STF E; 4OEM A; 2VHS A; 2P86 A; 3PT2 A; 1KHQ A; 2DC7 A; 4PP2 E; 4I07 A; 2AIM A; 3TMP A; 3LFY A; 1Y08 A; 2ATO A; 3C9E A; 2DZY A; 1M6D A; 2JQG R; 1KXR A; 3KWZ A; 3O1G A; 3OIS A; 1CB5 A; 1K3B B; 3H8C A; 1YT7 A; 2DZZ A; 4QRG A; 2AGA A; 2YJ9 A; 1TLO A; 1ME4 A; 2FO5 A; 3H89 A; 4REZ A; 2XU1 A; 5FPW A; 5EZQ A; 3P5W A; 3S3Q A; 1GEC E; 3PSE A; 4A5U A; 3BC3 A; 3BWK A; #chains in the Genus database with same CATH homology 2BTW B; 3PHW A; 4R3D A; 3MTV A; 4MM3 B; 3PHU A; 3BY4 A; 4RF1 A; 4OW0 A; 3O65 A; 4MI7 A; 4WUR A; 3BBA A; 4BOS A; 4BOQ A; 2BTW A; 4OVZ A; 4BOP A; 4P16 A; 2UZJ A; 3PHX A; 4IP3 A; 4RKX A; 4XZX A; 1YZB A; 2J7Q C; 2JTC A; 1DKI A; 4PT5 A; 3W31 A; 4BOU A; 2Z84 A; 3RNV A; 4GUA A; 4D8I A; 3MJ5 A; 3TRK A; 3W30 A; 3B21 A; 3C0R A; 3IFU A; 4BOZ A; 4HXD B; 4M0W A; 4IUM A; 3PT2 A; 4RNA A; 3OQC A; 4RF0 A; 3TMP A; 3ZNH A; 3BB7 A; 4ZTB A; 3PRM A; 1UKF A; 2FE8 A; 4OVZ B; 2BU3 A; 2DOS A; 5KO3 A; 3PRP A; 3MP2 A; 5EZS A; 2AGA A; 5JZE A; 2J7Q A; 1PVJ A; 4D8B A; 4REZ A; 2HWK A; 3E9S A; 5EZQ A; 4D8E A; 2JRI A; 5E6J A; 3PSE A; 4A5U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
