The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
35
|
sequence length |
134
|
structure length |
124
|
Chain Sequence |
GIDIIECENLLKEMNVQKIPESSLFTNIKEALQAEVFNSTVEDDFESFISYELQNHGPLMLIRPSSECLHAECIVGYDSEVKKVLIYDSNTSPEWQSNIDVYDKLTLAFNCSICGLYYDGVYEP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and enzymatic characterization of a host-specificity determinant from Salmonella.
pubmed doi rcsb |
| molecule tags |
Hydrolase, toxin
|
| source organism |
Salmonella enterica subsp. enterica serovar typhimurium str. sl1344
|
| molecule keywords |
Bacteriophage encoded virulence factor
|
| total genus |
35
|
| structure length |
124
|
| sequence length |
134
|
| ec nomenclature | |
| pdb deposition date | 2013-08-30 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Cathepsin B; Chain A | Cathepsin B; Chain A |
#chains in the Genus database with same CATH superfamily 4MI7 A; #chains in the Genus database with same CATH topology 1IWD A; 1NQC A; 1XKG A; 3WXG A; 3BBA A; 4W5C A; 2DCB A; 2E03 A; 3BPM A; 4QRV A; 4REZ A; 2YJC A; 4FIP A; 2Z84 A; 1SNK A; 1JQP A; 2R9M A; 1U9X A; 4YYQ A; 2YJ8 A; 1TL9 A; 5A24 A; 3OVX A; 4QRG A; 1YAL A; 4QH6 A; 3O0U A; 3MP2 A; 3I06 A; 3MJ5 A; 4A5U A; 2FYE A; 1HUC B; 1Y08 A; 2VHS A; 4PI3 A; 4QBB A; 1U9V A; 2Y6E A; 1U9W A; 3IUT A; 4W4U A; 1M6D A; 4MSX A; 3V6C A; 1BGO A; 3IHP A; 2J7Q C; 3BCN A; 4D8I A; 3PHX A; 1AU4 A; 1AYW A; 2IBI A; 4BQV A; 3D6S A; 4BOP A; 3O65 A; 1S4V A; 2BTW A; 3PT2 A; 4YYR A; 4Q8G A; 5EZS A; 3V6E A; 3KFQ A; 3CBJ A; 1QDQ A; 3HHI A; 1X9Y A; 2AS8 A; 1F29 A; 1AU0 A; 1DKI A; 2FRQ A; 4XZX A; 4CDF B; 5CVO B; 2P0R A; 1EWM A; 4IP3 A; 1PBH A; 2G8E A; 5EZQ A; 2ARY A; 3M99 A; 3H89 A; 3CBK A; 1ZCM A; 3W31 A; 4OVZ A; 3K9M A; 3GCB A; 4M0W A; 2E00 A; 1DEU A; 2ATO A; 2XU3 A; 2XU4 A; 3TMP A; 2AIM A; 4N4Z A; 4RF0 A; 3P5V A; 1CB5 A; 4X6H A; 2R9C A; 1THE A; 2Y5B A; 3P5U A; 1CVZ A; 2E02 A; 3HWN A; 3W30 A; 3B21 A; 4YYW A; 9PAP A; 2HHN A; 1AYV A; 1CPJ A; 5JA7 A; 3OF8 A; 2DJF B; 4P16 A; 2C0Y A; 1QMY A; 3PRM A; 2FUD A; 3KSE A; 2CB5 A; 3E1Z B; 1CQD A; 1MDW A; 4BPV A; 3E9S A; 2H7J A; 1PAD A; 2G7Y A; 2YJ2 A; 2B1M A; 4BSQ A; 2R9N A; 1ME4 A; 3ZUA A; 1ITO A; 4YV8 A; 2R9F A; 4CZW A; 3O1G A; 4DMX A; 2NQA A; 3N3K A; 1KHP A; 3MOR A; 1Y4H A; 3BC3 A; 1EWL A; 1ZIV A; 3U8E A; 3PHU A; 2P86 A; 1EWP A; 3RVW A; 3S3R A; 3DF0 A; 4CDE B; 1QXP A; 1Q6K A; 1DF0 A; 1AU2 A; 1VSN A; 3H7D A; 3PBH A; 4XUI A; 4PP1 A; 4K7C A; 4YYV A; 3MHH A; 1CS8 A; 3LFY A; 2F1G A; 1K3B B; 1PPD A; 3P5W A; 6PAD A; 2DCC A; 1ICF A; 4WA6 A; 3H6S A; 5K16 A; 2DC9 A; 3OF9 A; 4YYS A; 1CV8 A; 4R3D A; 1AIM A; 4BOQ A; 4MI7 A; 4OEL A; 3PW3 A; 2DZZ A; 1NL6 A; 1ME3 A; 4BS5 A; 1F2C A; 2FE8 A; 2F7D A; 3C0R A; 3QJ3 A; 1FH0 A; 2UZJ A; 2BDL A; 4OEM A; 3NHE A; 2FRA A; 3AI8 A; 4N79 A; 3PDF A; 2P7U A; 4CDC B; 4HXD B; 4OW0 A; 1SP4 B; 2IPP B; 1QOL A; 4AXM A; 1O0E A; 2AYN A; 4DMY A; 2DC6 A; 2PRE A; 2BU3 A; 5CHT A; 1CJL A; 2HWK A; 1YT7 A; 5JZE A; 4RY2 A; 3KWB X; 4KLB A; 8PCH A; 1PVJ A; 5CHV A; 1MIR A; 3RVV A; 4ZTB A; 4X6J A; 1UKF A; 3H8C A; 3P5X A; 4BOZ A; 2GHU A; 2BDZ A; 2PAD A; 2FTD A; 5J94 A; 1KFU L; 2GFO A; 1PPN A; 3MTV A; 3WXF A; 3PRP A; 1TLO A; 4P6E A; 2WBF X; 1PPO A; 3KKU A; 2HXZ A; 4N8W A; 3PNR A; 4MM3 B; 1KXR A; 2R9O A; 1U9Q X; 3F75 A; 1MHW A; 1AYU A; 2CIO A; 4MZS A; 3KW9 A; 3N3G A; 2B1N A; 3USV A; 1VJV A; 3BB7 A; 3BWK A; 4IUM A; 1EF7 A; 4I07 A; 2JTC A; 5E6J A; 1GMY A; 1YVB A; 4RF1 A; 1A6R A; 3MTN A; 4CDD B; 4AXL A; 2BTW B; 1KHQ A; 3RNV A; 1NPZ A; 4P6G A; 1PPP A; 3WXE A; 2FT2 A; 3S3Q A; 1GCB A; 5PAD A; 3CH2 X; 2PBH A; 3KX1 A; 7PCK A; 4PP2 E; 5F02 A; 4G54 A; 3QT4 A; 3PSE A; 4BOS A; 3LXS A; 4I04 A; 2DC7 A; 4OVZ B; 3RVX A; 2VHF A; 4YVA A; 3N4C A; 1ATK A; 4WUR A; 3OVZ A; 1PE6 A; 4PAD A; 4BS6 A; 2HH5 A; 5FPW A; 4I05 A; 3K8U A; 1PXV A; 4ZUX U; 1NLJ A; 2JRI A; 3IV2 A; 3HHA A; 5EGW A; 2AVW A; 3IEJ A; 1KFX L; 4FK5 A; 1PCI A; 2AU1 A; 3I3T A; 4RNA A; 2PNS A; 2ACT A; 2FQ9 A; 1YK7 A; 3BY4 A; 2OUL A; 1BP4 A; 3BPF A; 4PT5 A; 1BY8 A; 1EWO A; 4X6I A; 1MS6 A; 5EF4 A; 1AEC A; 2G6D A; 3F5V A; 1NB5 A; 2JQF R; 2J7Q A; 3HD3 A; 3IMA A; 3OQC A; 1YK8 A; 2JQG R; 2OP3 A; 3IOQ A; 3OIS A; 1F2B A; 2O6X A; 2NQD B; 3B79 A; 3CH3 X; 3ZNH A; 5CVN B; 2AUX A; 3H8B A; 5KO3 A; 2YJ9 A; 2DC8 A; 2DCA A; 1NB3 A; 2AGA A; 1PIP A; 2DZY A; 2R6N A; 1MEM A; 4RKX A; 3BOW A; 4GUA A; 4D8E A; 2NQG A; 3K24 A; 4XR7 A; 5JH3 A; 3IFU A; 4MZO A; 3KWZ A; 1MEG A; 3TNX A; 3QSD A; 2E01 A; 2OZ2 A; 1U5I A; 1CSB B; 2HD5 A; 4W5B A; 2XU1 A; 2DJG B; 4HWY A; 1AU3 A; 1BQI A; 1F2A A; 1POP A; 4YYU A; 4FJC A; 4QRX A; 5CVM A; 4BOU A; 2G8J A; 3MHS A; 1CTE A; 4D8B A; 1GEC E; 2XU5 A; 2DCD A; 2AYO A; 3PHW A; 1TU6 A; 3ERV A; 1GLO A; 4Q8H A; 3TRK A; 2FO5 A; 2NQI A; 2YJB A; 1YZB A; 2DOS A; 2AUZ A; 1STF E; 3C9E A; #chains in the Genus database with same CATH homology 3TMP A; 4RF0 A; 3BBA A; 2JRI A; 4REZ A; 2Z84 A; 4HXD B; 4OW0 A; 3W30 A; 3B21 A; 4RNA A; 3BY4 A; 4P16 A; 4PT5 A; 3MP2 A; 2BU3 A; 3PRM A; 3MJ5 A; 2HWK A; 5JZE A; 4A5U A; 3E9S A; 1PVJ A; 4ZTB A; 2J7Q A; 3OQC A; 1UKF A; 4BOZ A; 3MTV A; 3PRP A; 3ZNH A; 5KO3 A; 4MM3 B; 2J7Q C; 4D8I A; 2AGA A; 3PHU A; 4RKX A; 3PHX A; 4GUA A; 4D8E A; 3IFU A; 3BB7 A; 4IUM A; 2JTC A; 4BOP A; 5E6J A; 3O65 A; 4RF1 A; 2BTW A; 3PT2 A; 2BTW B; 5EZS A; 3RNV A; 1DKI A; 4XZX A; 4BOU A; 4D8B A; 4R3D A; 4BOQ A; 4IP3 A; 4MI7 A; 5EZQ A; 3PHW A; 3W31 A; 3PSE A; 4OVZ A; 3TRK A; 4BOS A; 4OVZ B; 4M0W A; 2FE8 A; 1YZB A; 2DOS A; 4WUR A; 3C0R A; 2UZJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
