The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
103
|
sequence length |
350
|
structure length |
350
|
Chain Sequence |
TVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCNSDSFVRLHDGAMRFHGTNPIAVGVPAADDMPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDPNAVEMLAPVGGEFGFKGAALAGVVEIFSAVLTGMRLSFDLAPMGGPDFSTPRGLGAFVLALKPEAFLERDVFDESMKRYLEVLRGSPAREDCKVMAPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSPPTYH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Agrobacterium Tumefaciens Malate Dehydrogenase
rcsb |
| molecule keywords |
malate dehydrogenase
|
| molecule tags |
Oxidoreductase
|
| source organism |
Agrobacterium tumefaciens
|
| total genus |
103
|
| structure length |
350
|
| sequence length |
350
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2005-03-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02615 | Ldh_2 | Malate/L-lactate dehydrogenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 | Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Hypothetical oxidoreductase yiak; domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Hypothetical oxidoreductase yiak; domain 2 |
#chains in the Genus database with same CATH superfamily 3I0P A; 1X0A A; 1S20 A; 2CWF A; 3UOE A; 2X06 A; 4H8A A; 1VBI A; 2CWH A; 1NXU A; 1WTJ A; 1XRH A; 1V9N A; 1Z2I A; 4FJU A; 4FJS A; 2G8Y A; #chains in the Genus database with same CATH topology 3J81 W; 5FUY A; 3TO9 A; 2ARP F; 2L7X A; 3VDP A; 4PDB A; 1Q9B A; 3FC3 A; 4H8A A; 1MJA A; 2M6Q A; 4KHP H; 3VDU A; 3KY9 A; 2CPQ A; 3UEY A; 4X62 H; 1RFH A; 3KDG A; 4DR4 H; 1I94 H; 1DS2 I; 2ZQE A; 1NUB A; 1SGR I; 2XRC A; 4DUZ H; 3CXL A; 4FJS A; 3UGI A; 2LRR A; 4DR1 H; 3L7Z C; 2RC4 A; 2WVJ A; 1X0A A; 3TJQ A; 4FKD A; 2UXD H; 1MJB A; 2LB7 A; 1PTR A; 1KHM A; 2ZM6 H; 4DV1 H; 4X66 H; 2CWG A; 3MEK A; 2VKC A; 1IY5 A; 2Y0M A; 4E1P A; 3J80 W; 3NCV A; 2UUA H; 3SB1 A; 2VRW B; 2K1H A; 4GI3 C; 1N36 H; 4UXH A; 1WHR A; 2SGF I; 1UUC A; 3V69 A; 1HEV A; 4JVH A; 1VDD A; 4JI5 H; 2QQC A; 2ANR A; 2SGE I; 5IT9 W; 2NU2 I; 2X52 A; 4UXJ A; 2A1S A; 3RF2 A; 1J4W A; 2GIV A; 1N32 H; 2OD1 A; 1TGS I; 1WVN A; 1Y1B A; 3QWP A; 4JCV E; 4SGB I; 4LFC H; 1FJG H; 4OX9 H; 4JI8 H; 4NXN H; 2LTL A; 1TIH A; 2SGQ I; 2PQU A; 2ENN A; 5HQ8 A; 4B3S H; 1X4S A; 1HR0 H; 1KBE A; 1V8C A; 4AML A; 2QQE A; 5BR8 H; 1TBN A; 4LF8 H; 2E5L H; 2BA0 A; 1AN1 I; 2GKR I; 4JVY A; 2CPM A; 2ERW A; 1FAQ A; 4JV5 H; 1OMU A; 2M5X A; 1MT1 A; 3QD7 X; 2GKV A; 1N33 H; 3UFF A; 1S03 G; 4LIJ A; 1IW4 A; 2V1C A; 2GVI A; 5HI7 A; 4B6D A; 1CT0 I; 1UVG A; 5DT9 A; 1SGP I; 1P9G A; 2KMO A; 4YHH H; 2QQ0 A; 3GR5 A; 2ELI A; 2X06 A; 5CCL A; 2N17 A; 2NU0 I; 2CTK A; 4DV2 H; 1H0Z A; 2FMR A; 1UHA A; 4NZR M; 2HH2 A; 3GOX A; 2L8E A; 2M8W A; 3HH2 C; 4B3T H; 2UXB H; 2VQF H; 1WGC A; 5CCM A; 1SGY I; 4JI7 H; 1ZZI A; 2CJS C; 1K7U A; 2ANN A; 2VQE H; 1K7T A; 3SGQ I; 3R5C A; 5FUV A; 1BUS A; 2ENZ A; 2BUS A; 1NXU A; 3R5A A; 2JW6 A; 4EC5 A; 1S20 A; 4K0K H; 2A20 A; 4OCH A; 1R0R I; 5LMN H; 1YU6 C; 1KBF A; 1TBO A; 4JI6 H; 3OSS D; 2FFM A; 4WP4 A; 4E1R A; 2SGD I; 3E2I A; 2LF0 A; 1PPF I; 1BMO A; 1ZZK A; 2N1A B; 1LR7 A; 2GKT I; 1CE3 A; 3JAM W; 4JI2 H; 3GKU A; 1V1I A; 1M8B A; 4UXI A; 1SGN I; 1U5K A; 1OVO A; 3QTL D; 1PTQ A; 4DV3 H; 3OTO H; 2B0U C; 2UVO A; 1OMT A; 1Y8F A; 2V1C C; 5E3Q A; 1HNW H; 3PDN A; 4JI4 H; 3U1K A; 4WAN A; 2NN6 G; 1IBK H; 1VIG A; 1HPT A; 2N71 A; 3BJI A; 2UXC H; 1CGJ I; 1TUS A; 2KCX A; 3TOB A; 4WAL A; 4DR2 H; 2F3C I; 2ROW A; 4LF7 H; 4NXM H; 4JI0 H; 1FAR A; 2J87 A; 2QQD A; 4IFD G; 4FJU A; 2F4V H; 2OPV A; 1XNR H; 5K36 G; 2W0T A; 2NU3 I; 2X3T A; 1F0X A; 2PT7 G; 2CWH A; 1Z2I A; 1TUR A; 4DR5 H; 2YUU A; 2ORV A; 1WKX A; 4BA1 I; 4YY3 H; 1X9Z A; 1XBT A; 2YQR A; 2UUC H; 3AEV B; 1KMA A; 1HNX H; 2LTM A; 2JYY A; 4GKK H; 3D00 A; 3T1H H; 3TOA A; 1W3S A; 1R79 A; 4JI1 H; 4GKJ H; 2YQP A; 1P9Z A; 1SGE I; 4LF5 H; 4L9M A; 1CGI I; 3RU0 A; 1WGT A; 1M8C A; 3EZJ A; 1MJ9 A; 4LF6 H; 1DTJ A; 2JE6 I; 3OL0 A; 4NBQ A; 1IBM H; 1XRH A; 2D9I A; 5A2Q W; 1FYB A; 3OVO A; 2E73 A; 2ORW A; 2KMP A; 3SGB I; 4OVO A; 1HNZ H; 3R5D A; 3VKE A; 2CTJ A; 1FKA H; 1HJA I; 1WE8 A; 1N34 H; 1XX6 A; 1N13 A; 2E5R A; 3UOE A; 5EX3 A; 1ZTG A; 4DV7 H; 1PQX A; 2DIP A; 1CT4 I; 1J5E H; 4QMF B; 1MSZ A; 2HHH H; 1CT2 I; 5J8C A; 1VBI A; 5EX0 A; 4JYA H; 3B4V C; 5FUX A; 4DV0 H; 5E3P A; 2NU1 I; 1HDL A; 2QND A; 3R5B A; 5DAE A; 2OPU A; 2CTE A; 4AQY H; 3I0P A; 4B8C D; 2JEA I; 1DT4 A; 4B8T A; 3VE5 A; 1XMO H; 2LEO A; 2WGC A; 2AXY A; 4LF9 H; 2O4C A; 4LFB H; 1ULK A; 1V1H A; 2JZM A; 1ODH A; 3J7A K; 4DV5 H; 1V9N A; 3OXL A; 1SGD I; 2J9R A; 3TO7 A; 2NU4 I; 3OET A; 2CWF A; 2Y3M A; 4MPI A; 5IWA H; 4E9J A; 1X4N A; 1CHO I; 1IY6 A; 5J8F A; 4DUY H; 1WTJ A; 9WGA A; 4DR3 H; 2G8Y A; 1W4R A; 3OXG A; 2P2R A; 1XNQ H; 1TUA A; 2QPO A; 3UGD A; 1ULM A; 2Z0S A; 1OYV I; 4OD6 A; 2OVO A; 4NZT M; 3FSY A; 1J5K A; 1XMQ H; 1K1G A; 5FLX W; 4LF4 H; 2SGP I; 2CTL A; 2FNF X; 1X4M A; 7WGA A; 1PCE A; 4DV6 H; 4LFA H; 2HH3 A; 1K7V A; 1PJU A; 2LUY A; 1I6U A; 2E3U A; 2FPH X; 2JA9 A; 2RIJ A; 4X65 H; 2B8T A; 1LR9 A; 1Z7K B; 1TBQ R; 4B3R H; 2JEB I; 1YTP A; 2DB6 A; 4DR7 H; 5LL6 b; 3FAU A; 4OO1 G; 4HGU A; 1FY7 A; 1LR8 A; 4G08 A; 4DNC A; 1DS3 I; 3UEJ A; 3OXF A; 2KMQ A; 5JHW C; 4AM3 A; 2V53 A; 1SGQ I; 2PY9 A; 4AIM A; 1EC6 A; 3UGL A; 1ULN A; 2ODD A; 2JZX A; 2JA1 A; 1XA6 A; 2UZ3 A; 5JEA G; 2DKV A; 4JI3 H; 1SEI A; 2KMR A; 2JVZ A; 2OZU A; 1Y1C A; 3T1Y H; 2MJH A; 1IBL H; 2N52 A; 2P6A C; 4DV4 H; 5E3R A; 3GAB A; 4BA2 I; 2DGR A; 1TOT A; 1CSO I; 2OU2 A; 1ZZJ A; 1VIH A; 2UUB H; 2PQ8 A; 2WCY A; 2K9H A; 3QAH A; 1TBR R; 3SEK C; 2UU9 H; 3KDK A; 2BL5 A; 1X74 A; 1UG8 A; 4X64 H; 4DR6 H; 4B3M H; 1UVF A; 2JXD A; 2CTF A; 5FUW A; 3E59 A; 5LMU H; 4A24 A; 1AN7 A; 5C0X G; 3TO6 A; 3FSX A; 2CTM A; #chains in the Genus database with same CATH homology 3I0P A; 1X0A A; 1S20 A; 2CWF A; 3UOE A; 2X06 A; 4H8A A; 1VBI A; 2CWH A; 1NXU A; 1WTJ A; 1XRH A; 1V9N A; 1Z2I A; 4FJU A; 4FJS A; 2G8Y A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
