3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
molecule keywords Dehydrogenase
molecule tags Oxidoreductase
source organism Sinorhizobium meliloti
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
2CWHA 2CWFA 3I0PA 2G8YA 1S20A 2X06A 1Z2IA 3UOEA 1V9NA 1XRHA 1WTJA 4H8AA 4FJUA 1NXUA 1VBIA 4FJSA 1X0AA
chains in the Genus database with same CATH superfamily
2UXDH 4LF5H 1YU6C 3J81W 3UGDA 1WGCA 2JA9A 4L9MA 2QNDA 4DV1H 5JHWC 4FJUA 2LUYA 1MT1A 1PQXA 2FPHX 4E1PA 1ULKA 4B8CD 2V1CC 3QAHA 1X4NA 2PY9A 2FNFX 4JI4H 2CTJA 3OXFA 2UUBH 4E9JA 4NBQA 1K7TA 1V8CA 1RFHA 5E3QA 1CE3A 5FUYA 1X0AA 2A20A 4JI7H 4LF4H 2PQ8A 2JVZA 3CXLA 5E3RA 1MJ9A 2G8YA 1FJGH 3RF2A 1IBMH 1NXUA 4AQYH 2V53A 3OL0A 1XNQH 1KHMA 5EX0A 2O4CA 1Z7KB 2DKVA 4OX9H 5J8FA 1X4SA 3GKUA 1V1HA 4GKKH 2ORWA 4B3MH 2QQ0A 1LR9A 3OXLA 2NN6G 3SGBI 2A1SA 4DR1H 1EC6A 1FY7A 2RC4A 2ZM6H 1N33H 1SGDI 1SGEI 1AN7A 1HNWH 4EC5A 1TUSA 2F4VH 1ULNA 1FARA 1ZZKA 2UUAH 3VDPA 1V9NA 1OYVI 4KHPH 2GVIA 4HGUA 2FMRA 1XMQH 4A24A 1KMAA 2Y3MA 2KMOA 4NXMH 2CTKA 2BA0A 3T1HH 5HI7A 1TBRR 2ENZA 5BR8H 1HPTA 2JZMA 4LF8H 1KBEA 4NZRM 3FSYA 3T1YH 1TGSI 4DV5H 2SGQI 2JXDA 4AIMA 1TUAA 2P2RA 3TO9A 3OSSD 4SGBI 4JVYA 5IT9W 1OMTA 2SGDI 4DUZH 1X9ZA 1TURA 4X64H 2VKCA 3B4VC 4B3RH 5FUXA 1VDDA 2X06A 1TBQR 3KDKA 3UGLA 1ZZJA 1KBFA 2GKRI 2HH3A 1Y1CA 1S20A 1HEVA 1J5KA 4JI3H 1TBNA 1WKXA 2SGFI 2GKTI 1K7UA 2X3TA 3UGIA 3OXGA 2D9IA 1AN1I 4WANA 3UEJA 1X74A 4UXJA 2M8WA 5LMNH 2WVJA 3GABA 2NU2I 2OPUA 4JI2H 2W0TA 1H0ZA 2OD1A 2DGRA 2KMRA 1M8CA 1PCEA 4DV2H 1N32H 1TBOA 3TOBA 1R79A 3QD7X 3AEVB 2LTMA 2JYYA 1CSOI 4K0KH 1SGPI 4B3SH 3D00A 2N17A 3V69A 2MJHA 4BA2I 4YY3H 2CWFA 1WE8A 4NZTM 1MJBA 3OTOH 4JI5H 4JVHA 1N13A 1WVNA 2FFMA 1PJUA 3R5DA 2ENNA 3HH2C 4JI6H 3E2IA 3UFFA 4JCVE 4BA1I 3KY9A 7WGAA 4OCHA 4YHHH 4WP4A 1FAQA 2VQFH 2J87A 2CTLA 1U5KA 3FSXA 1UVGA 2XRCA 3MEKA 1R0RI 2N52A 4JI0H 4LFBH 2JW6A 1HNZH 1ZZIA 4X62H 3PDNA 3BJIA 4G08A 3E59A 1CGII 1CGJI 2NU3I 5FUVA 1LR8A 1HJAI 5DAEA 1ZTGA 2M5XA 3JAMW 4AMLA 4FJSA 1J5EH 2YUUA 2JE6I 1YTPA 1XA6A 5J8CA 2QPOA 2P6AC 4GKJH 5LMUH 3SB1A 2M6QA 1K1GA 4MPIA 4X66H 2LRRA 2KMQA 5K36G 3TOAA 2CWGA 2PQUA 2CTMA 1DS2I 3R5BA 2OPVA 5C0XG 2BL5A 2F3CI 2N71A 1S03G 2QQCA 2ARPF 1ODHA 4LF9H 2UZ3A 1WGTA 3RU0A 2PT7G 3GOXA 2L7XA 4B6DA 3VDUA 2UVOA 2HH2A 2DIPA 1W4RA 4B3TH 2RIJA 1OVOA 1IBLH 2JEAI 4DR5H 2GIVA 1FYBA 3KDGA 4DR3H 2V1CA 1TIHA 3SGQI 2K1HA 1I6UA 1P9GA 5FLXW 4DR4H 5FUWA 2LF0A 1NUBA 1WTJA 2ANNA 3VE5A 5IWAH 1SGRI 2CWHA 3TO7A 3I0PA 2LEOA 2ODDA 1Z2IA 2J9RA 4NXNH 4QMFB 2X52A 3TJQA 2OVOA 4X65H 2QQEA 2Z0SA 1HNXH 1IW4A 2E5RA 2NU1I 1Y8FA 2GKVA 2NU0I 3OETA 1CT4I 2ZQEA 4LF7H 2ROWA 4DNCA 4PDBA 1N36H 2E3UA 1XBTA 1TOTA 4OD6A 2N1AB 2UUCH 1WHRA 4DUYH 1IY6A 2E5LH 4JYAH 5EX3A 1BMOA 2VQEH 3EZJA 1W3SA 1VIHA 5JEAG 1IY5A 4WALA 1K7VA 2CTEA 3GR5A 2AXYA 2L8EA 3OVOA 1UHAA 1MSZA 4JI8H 1UUCA 1CT0I 4OVOA 4LFCH 2VRWB 2LTLA 1PPFI 3VKEA 4IFDG 2KMPA 1UG8A 2JEBI 1M8BA 2UU9H 1Y1BA 2B8TA 1SGQI 2JZXA 3UEYA 2CPMA 4B8TA 5E3PA 2NU4I 5LL6b 4H8AA 2UXCH 1ULMA 1CT2I 4FKDA 2WGCA 1SGNI 4AM3A 1PTRA 4UXIA 2E73A 1VBIA 4DR7H 4DV0H 1IBKH 4DV4H 3SEKC 2QQDA 2LB7A 1DTJA 5HQ8A 4DV6H 3FC3A 1BUSA 2ELIA 1CHOI 1XRHA 1N34H 5DT9A 1DT4A 1SEIA 2JA1A 3QWPA 3TO6A 4LF6H 4DV7H 2K9HA 2ERWA 2Y0MA 1OMUA 2CTFA 4LFAH 2DB6A 1Q9BA 1PTQA 2OU2A 5CCLA 1DS3I 2B0UC 4JI1H 3J7AK 1I94H 4DR6H 2BUSA 1FKAH 2WCYA 4UXHA 4LIJA 2HHHH 4OO1G 1MJAA 1XMOH 3L7ZC 1UVFA 3R5AA 4GI3C 1HDLA 3R5CA 3J80W 1J4WA 5A2QW 1F0XA 2ORVA 9WGAA 2SGPI 2ANRA 1LR7A 2SGEI 1VIGA 4DV3H 1HR0H 3QTLD 2CJSC 2CPQA 3NCVA 2OZUA 4E1RA 1V1IA 1XX6A 1XNRH 1X4MA 2KCXA 5CCMA 3U1KA 3UOEA 2YQPA 2UXBH 4JV5H 2YQRA 1SGYI 1P9ZA 4DR2H 3FAUA
chains in the Genus database with same CATH topology
2CWHA 2CWFA 3I0PA 2G8YA 1S20A 2X06A 1Z2IA 3UOEA 1V9NA 1XRHA 1WTJA 4H8AA 4FJUA 1NXUA 1VBIA 4FJSA 1X0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CWH A;  2CWF A;  3I0P A;  2G8Y A;  1S20 A;  2X06 A;  1Z2I A;  3UOE A;  1V9N A;  1XRH A;  1WTJ A;  4H8A A;  4FJU A;  1NXU A;  1VBI A;  4FJS A;  1X0A A; 
#chains in the Genus database with same CATH topology
 2UXD H;  4LF5 H;  1YU6 C;  3J81 W;  3UGD A;  1WGC A;  2JA9 A;  4L9M A;  2QND A;  4DV1 H;  5JHW C;  4FJU A;  2LUY A;  1MT1 A;  1PQX A;  2FPH X;  4E1P A;  1ULK A;  4B8C D;  2V1C C;  3QAH A;  1X4N A;  2PY9 A;  2FNF X;  4JI4 H;  2CTJ A;  3OXF A;  2UUB H;  4E9J A;  4NBQ A;  1K7T A;  1V8C A;  1RFH A;  5E3Q A;  1CE3 A;  5FUY A;  1X0A A;  2A20 A;  4JI7 H;  4LF4 H;  2PQ8 A;  2JVZ A;  3CXL A;  5E3R A;  1MJ9 A;  2G8Y A;  1FJG H;  3RF2 A;  1IBM H;  1NXU A;  4AQY H;  2V53 A;  3OL0 A;  1XNQ H;  1KHM A;  5EX0 A;  2O4C A;  1Z7K B;  2DKV A;  4OX9 H;  5J8F A;  1X4S A;  3GKU A;  1V1H A;  4GKK H;  2ORW A;  4B3M H;  2QQ0 A;  1LR9 A;  3OXL A;  2NN6 G;  3SGB I;  2A1S A;  4DR1 H;  1EC6 A;  1FY7 A;  2RC4 A;  2ZM6 H;  1N33 H;  1SGD I;  1SGE I;  1AN7 A;  1HNW H;  4EC5 A;  1TUS A;  2F4V H;  1ULN A;  1FAR A;  1ZZK A;  2UUA H;  3VDP A;  1V9N A;  1OYV I;  4KHP H;  2GVI A;  4HGU A;  2FMR A;  1XMQ H;  4A24 A;  1KMA A;  2Y3M A;  2KMO A;  4NXM H;  2CTK A;  2BA0 A;  3T1H H;  5HI7 A;  1TBR R;  2ENZ A;  5BR8 H;  1HPT A;  2JZM A;  4LF8 H;  1KBE A;  4NZR M;  3FSY A;  3T1Y H;  1TGS I;  4DV5 H;  2SGQ I;  2JXD A;  4AIM A;  1TUA A;  2P2R A;  3TO9 A;  3OSS D;  4SGB I;  4JVY A;  5IT9 W;  1OMT A;  2SGD I;  4DUZ H;  1X9Z A;  1TUR A;  4X64 H;  2VKC A;  3B4V C;  4B3R H;  5FUX A;  1VDD A;  2X06 A;  1TBQ R;  3KDK A;  3UGL A;  1ZZJ A;  1KBF A;  2GKR I;  2HH3 A;  1Y1C A;  1S20 A;  1HEV A;  1J5K A;  4JI3 H;  1TBN A;  1WKX A;  2SGF I;  2GKT I;  1K7U A;  2X3T A;  3UGI A;  3OXG A;  2D9I A;  1AN1 I;  4WAN A;  3UEJ A;  1X74 A;  4UXJ A;  2M8W A;  5LMN H;  2WVJ A;  3GAB A;  2NU2 I;  2OPU A;  4JI2 H;  2W0T A;  1H0Z A;  2OD1 A;  2DGR A;  2KMR A;  1M8C A;  1PCE A;  4DV2 H;  1N32 H;  1TBO A;  3TOB A;  1R79 A;  3QD7 X;  3AEV B;  2LTM A;  2JYY A;  1CSO I;  4K0K H;  1SGP I;  4B3S H;  3D00 A;  2N17 A;  3V69 A;  2MJH A;  4BA2 I;  4YY3 H;  2CWF A;  1WE8 A;  4NZT M;  1MJB A;  3OTO H;  4JI5 H;  4JVH A;  1N13 A;  1WVN A;  2FFM A;  1PJU A;  3R5D A;  2ENN A;  3HH2 C;  4JI6 H;  3E2I A;  3UFF A;  4JCV E;  4BA1 I;  3KY9 A;  7WGA A;  4OCH A;  4YHH H;  4WP4 A;  1FAQ A;  2VQF H;  2J87 A;  2CTL A;  1U5K A;  3FSX A;  1UVG A;  2XRC A;  3MEK A;  1R0R I;  2N52 A;  4JI0 H;  4LFB H;  2JW6 A;  1HNZ H;  1ZZI A;  4X62 H;  3PDN A;  3BJI A;  4G08 A;  3E59 A;  1CGI I;  1CGJ I;  2NU3 I;  5FUV A;  1LR8 A;  1HJA I;  5DAE A;  1ZTG A;  2M5X A;  3JAM W;  4AML A;  4FJS A;  1J5E H;  2YUU A;  2JE6 I;  1YTP A;  1XA6 A;  5J8C A;  2QPO A;  2P6A C;  4GKJ H;  5LMU H;  3SB1 A;  2M6Q A;  1K1G A;  4MPI A;  4X66 H;  2LRR A;  2KMQ A;  5K36 G;  3TOA A;  2CWG A;  2PQU A;  2CTM A;  1DS2 I;  3R5B A;  2OPV A;  5C0X G;  2BL5 A;  2F3C I;  2N71 A;  1S03 G;  2QQC A;  2ARP F;  1ODH A;  4LF9 H;  2UZ3 A;  1WGT A;  3RU0 A;  2PT7 G;  3GOX A;  2L7X A;  4B6D A;  3VDU A;  2UVO A;  2HH2 A;  2DIP A;  1W4R A;  4B3T H;  2RIJ A;  1OVO A;  1IBL H;  2JEA I;  4DR5 H;  2GIV A;  1FYB A;  3KDG A;  4DR3 H;  2V1C A;  1TIH A;  3SGQ I;  2K1H A;  1I6U A;  1P9G A;  5FLX W;  4DR4 H;  5FUW A;  2LF0 A;  1NUB A;  1WTJ A;  2ANN A;  3VE5 A;  5IWA H;  1SGR I;  2CWH A;  3TO7 A;  3I0P A;  2LEO A;  2ODD A;  1Z2I A;  2J9R A;  4NXN H;  4QMF B;  2X52 A;  3TJQ A;  2OVO A;  4X65 H;  2QQE A;  2Z0S A;  1HNX H;  1IW4 A;  2E5R A;  2NU1 I;  1Y8F A;  2GKV A;  2NU0 I;  3OET A;  1CT4 I;  2ZQE A;  4LF7 H;  2ROW A;  4DNC A;  4PDB A;  1N36 H;  2E3U A;  1XBT A;  1TOT A;  4OD6 A;  2N1A B;  2UUC H;  1WHR A;  4DUY H;  1IY6 A;  2E5L H;  4JYA H;  5EX3 A;  1BMO A;  2VQE H;  3EZJ A;  1W3S A;  1VIH A;  5JEA G;  1IY5 A;  4WAL A;  1K7V A;  2CTE A;  3GR5 A;  2AXY A;  2L8E A;  3OVO A;  1UHA A;  1MSZ A;  4JI8 H;  1UUC A;  1CT0 I;  4OVO A;  4LFC H;  2VRW B;  2LTL A;  1PPF I;  3VKE A;  4IFD G;  2KMP A;  1UG8 A;  2JEB I;  1M8B A;  2UU9 H;  1Y1B A;  2B8T A;  1SGQ I;  2JZX A;  3UEY A;  2CPM A;  4B8T A;  5E3P A;  2NU4 I;  5LL6 b;  4H8A A;  2UXC H;  1ULM A;  1CT2 I;  4FKD A;  2WGC A;  1SGN I;  4AM3 A;  1PTR A;  4UXI A;  2E73 A;  1VBI A;  4DR7 H;  4DV0 H;  1IBK H;  4DV4 H;  3SEK C;  2QQD A;  2LB7 A;  1DTJ A;  5HQ8 A;  4DV6 H;  3FC3 A;  1BUS A;  2ELI A;  1CHO I;  1XRH A;  1N34 H;  5DT9 A;  1DT4 A;  1SEI A;  2JA1 A;  3QWP A;  3TO6 A;  4LF6 H;  4DV7 H;  2K9H A;  2ERW A;  2Y0M A;  1OMU A;  2CTF A;  4LFA H;  2DB6 A;  1Q9B A;  1PTQ A;  2OU2 A;  5CCL A;  1DS3 I;  2B0U C;  4JI1 H;  3J7A K;  1I94 H;  4DR6 H;  2BUS A;  1FKA H;  2WCY A;  4UXH A;  4LIJ A;  2HHH H;  4OO1 G;  1MJA A;  1XMO H;  3L7Z C;  1UVF A;  3R5A A;  4GI3 C;  1HDL A;  3R5C A;  3J80 W;  1J4W A;  5A2Q W;  1F0X A;  2ORV A;  9WGA A;  2SGP I;  2ANR A;  1LR7 A;  2SGE I;  1VIG A;  4DV3 H;  1HR0 H;  3QTL D;  2CJS C;  2CPQ A;  3NCV A;  2OZU A;  4E1R A;  1V1I A;  1XX6 A;  1XNR H;  1X4M A;  2KCX A;  5CCM A;  3U1K A;  3UOE A;  2YQP A;  2UXB H;  4JV5 H;  2YQR A;  1SGY I;  1P9Z A;  4DR2 H;  3FAU A; 
#chains in the Genus database with same CATH homology
 2CWH A;  2CWF A;  3I0P A;  2G8Y A;  1S20 A;  2X06 A;  1Z2I A;  3UOE A;  1V9N A;  1XRH A;  1WTJ A;  4H8A A;  4FJU A;  1NXU A;  1VBI A;  4FJS A;  1X0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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