1PVJA

Crystal structure of the streptococcal pyrogenic exotoxin b (speb)- inhibitor complex
Total Genus 105

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
368
structure length
339
Chain Sequence
FARNEKEAKDSAITFIQKIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASFMESYVEQIKENKKLDTTYAQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPGFNGYQSAVVGIKP
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (94-97)TI11 (299-302)AH6 (312-325)S1 (64-66)TI1 (71-74)TIV1 (70-73)TVIII1 (76-79)AH5 (285-295)3H4 (307-309)S2 (78-83)TI2 (83-86)S3 (88-92)3H2 (153-156)TIV3 (104-107)AH3 (192-204)TII1 (111-114)AH2 (115-128)TII2 (177-180)3H1 (129-131)TIV6 (226-229)S8 (230-233)TIV7 (243-246)TI10 (242-245)TVIa1 (163-166)S6 (186-187)TII3 (183-186)TI8 (222-225)TIV4 (164-167)TI5 (165-168)TI6 (167-170)S5 (172-173)S7 (214-217)TIV5 (207-210)TI7 (219-222)3H3 (235-237)S10 (329-335)TI9 (241-244)AH4 (255-272)S9 (303-306)TIV9 (276-279)TVIII3 (277-280)AH1 (35-48)TI4 (131-134)TIV8 (246-249)TIV10 (335-338)S11 (338-347)S4 (100-104)Updating...
connected with : NaN
molecule tags Toxin
publication title Inhibition of autoprocessing of the streptococcal pyrogenic exotoxin B (speB). Crystal structure of the proenzyme-inhibitor complex
rcsb
molecule keywords pyrogenic exotoxin B
total genus 105
structure length 339
sequence length 368
chains with identical sequence B, C, D
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
A PF13734 Inhibitor_I69 Spi protease inhibitor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.910.30 Alpha Beta 2-Layer Sandwich Protein Binding, DinI Protein; Chain A Protein Binding, DinI Protein; Chain A 1pvjA02
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 1pvjA01
4D8IA 4D8EA 3BBAA 4RKXA 1DKIA 2JTCA 1PVJA 4D8BA 3BB7A 2UZJA
chains in the Genus database with same CATH superfamily
1PCIA 4HXDB 3H6SA 1ME3A 4PP1A 3N4CA 1EWLA 1Q6KA 3TMPA 1MS6A 4BS5A 3H8BA 1CPJA 1ITOA 2AU1A 5EZQA 3V6CA 2OULA 3HHIA 3MHHA 3K9MA 2CB5A 2VHFA 3DF0A 2E01A 3QJ3A 4RY2A 1EWPA 3MORA 2DC7A 3PNRA 3PHWA 4R3DA 1SNKA 5EGWA 2XU3A 2FT2A 4FK5A 1EF7A 3S3QA 4BS6A 4PP2E 1KHQA 2AS8A 1TLOA 3P5WA 4HWYA 4X6HA 5CVOB 3IOQA 2J7QA 1MHWA 1DKIA 3AI8A 2HHNA 3KW9A 4IUMA 3CBKA 1DEUA 2R9MA 3RVVA 1U5IA 1PBHA 1AU3A 1THEA 5K16A 4FJCA 3IV2A 3HD3A 3MP2A 5FPWA 2G6DA 3F75A 1A6RA 1EWMA 4MZOA 3OVZA 9PAPA 2DC6A 3KSEA 3RNVA 1CJLA 1CVZA 1PIPA 1QDQA 4DMYA 2P86A 1F2BA 2BDLA 4AXMA 2XU4A 4K7CA 3KX1A 4N8WA 1KFXL 2DZZA 1KFUL 4D8IA 1NQCA 1YK8A 4BOPA 4X6JA 3W30A 3IMAA 2AYOA 4YVAA 1MEMA 2P7UA 1NPZA 4Q8HA 4W5CA 3USVA 4I05A 2IPPB 4P6EA 2YJCA 1YK7A 2WBFX 4BOQA 4YYWA 3KWZA 1AECA 4QH6A 2AYNA 2GHUA 2G8JA 1PPDA 3RVWA 1NLJA 1CS8A 3TRKA 3PBHA 3PRMA 1GCBA 4M0WA 3P5XA 3MHSA 2H7JA 4I07A 4YYSA 2IBIA 2E03A 1YVBA 4BOSA 2AUZA 2PADA 3PDFA 3CH2X 1NB3A 4QRVA 5PADA 1U9XA 3PRPA 5KO3A 1YZBA 3S3RA 3RVXA 2P0RA 3O65A 3LFYA 1GECE 2E00A 4N4ZA 2NQDB 2HD5A 1M6DA 2YJBA 3QSDA 1GMYA 3N3GA 1ZCMA 3D6SA 4RF0A 2XU1A 4GUAA 2Y6EA 3WXFA 1STFE 4P16A 2PBHA 1BQIA 4YYVA 2R9NA 5CVNB 4EVXA 3MJ5A 1Y08A 4MI7A 4N79A 3HHAA 1K3BB 8PCHA 2ACTA 2FRQA 4RNAA 4PADA 1CQDA 3W31A 1TL9A 1O0EA 3BPFA 1NB5A 4W4UA 2AUXA 4ZUXU 1UKFA 4YYRA 4X6IA 2PNSA 3TNXA 2G7YA 4XR7A 3BB7A 1HUCB 1JQPA 1Y4HA 2FUDA 2JQGR 4G54A 1F2AA 4QBBA 3CBJA 4D8EA 3K24A 1AU2A 1DF0A 1AYVA 3B21A 2FE8A 1AU0A 3IUTA 3OISA 4AXLA 2FTDA 2E02A 4BOZA 2DJGB 1BP4A 1ICFA 3P5VA 4REZA 7PCKA 1VSNA 2YJ9A 4IP3A 1ZIVA 2DOSA 2OP3A 4KQTA 3BCNA 5JA7A 4D8BA 1IWDA 4I04A 1VJVA 2F7DA 1X9YA 2YJ8A 1KXRA 3BY4A 5JH3A 3KWBX 3HWNA 5E6JA 3I3TA 1S4VA 2PREA 1PADA 2C0YA 4OW0A 2DCCA 4OEMA 2ATOA 1NL6A 2B1MA 4RKXA 1AYUA 2DJFB 2UZJA 1SG2A 1CB5A 2J7QC 4PI3A 4CDFB 1SP4B 5F02A 4FIPA 5EF4A 1EWOA 2BTWB 3ERVA 4CDCB 4CZWA 2AVWA 3U8EA 3O0UA 1YALA 1KHPA 3IEJA 2DCAA 3F5VA 4CDEB 3V6EA 1CV8A 5CHTA 2DCBA 2BDZA 3LXSA 4W5BA 2R9FA 3MTVA 3OVXA 3BBAA 3ZUAA 5EZSA 1U2MA 3P5UA 4A5UA 1ATKA 3OF9A 3E9SA 3BOWA 5J94A 6PADA 1QXPA 3PW3A 1GHHA 4YV8A 5JZEA 4BSQA 3B79A 2HH5A 1PVJA 3N3KA 2BU3A 2DC9A 1YT7A 1GLOA 4KLBA 5CVMA 1AIMA 4BPVA 1BGOA 2JTCA 3C0RA 2B1NA 3WXGA 1U9VA 4BQVA 4MZSA 2HXZA 3KFQA 1QMYA 2NQGA 4WA6A 3PHUA 4OVZA 1MDWA 1PPOA 4CDDB 2G8EA 1BY8A 3NHEA 3BWKA 3OQCA 3M99A 1PPPA 2NQAA 4RF1A 1F29A 1PE6A 3BC3A 4XUIA 1FH0A 1CTEA 2CIOA 4OVZB 3H7DA 2FYEA 3H89A 4YYUA 1ME4A 4Q8GA 3K8UA 3IFUA 2GFOA 1AYWA 1XKGA 5A24A 2NQIA 1POPA 4OELA 1CSBB 2VHSA 1MIRA 3C9EA 3PT2A 4DMXA 4BOUA 1F2CA 2JQFR 2Y5BA 1U9WA 3OF8A 3BPMA 1U9QX 3H8CA 2R6NA 2O6XA 3QT4A 3PHXA 4MM3B 3E1ZB 2FQ9A 2JRIA 4QRXA 2XU5A 4YYQA 4PT5A 3IHPA 2AIMA 3PSEA 1QOLA 2BTWA 4MSXA 4QRGA 2DZYA 1PPNA 2OZ2A 3MTNA 1AU4A 4ZTBA 3GCBA 2FO5A 3ZNHA 1MEGA 2F1GA 2YJ2A 4XZXA 2HWKA 2AGAA 2Z84A 2R9OA 3KKUA 4P6GA 2DC8A 2FRAA 2R9CA 1PXVA 2DCDA 4WURA 3O1GA 3WXEA 3CH3X 5CHVA 2ARYA 1TU6A 3I06A
chains in the Genus database with same CATH topology
2BU3A 4HXDB 2JTCA 3C0RA 4BOZA 3TMPA 4REZA 5EZQA 4IP3A 2DOSA 4BOQA 4D8BA 3BY4A 3PHUA 4OVZA 3OQCA 3TRKA 3PHWA 4R3DA 4RF1A 5E6JA 3PRMA 4M0WA 4OVZB 4OW0A 4BOSA 3IFUA 4RKXA 2UZJA 3PRPA 5KO3A 1YZBA 3PT2A 4BOUA 2J7QA 3O65A 1DKIA 2J7QC 3PHXA 4MM3B 4IUMA 2BTWB 2FE8A 2JRIA 4RF0A 4GUAA 4P16A 4PT5A 3PSEA 4EVXA 3MP2A 2BTWA 3MJ5A 4MI7A 4ZTBA 3MTVA 4RNAA 3BBAA 3ZNHA 3W31A 3RNVA 5EZSA 4XZXA 2HWKA 2AGAA 2Z84A 4A5UA 1UKFA 3E9SA 3BB7A 4WURA 4D8IA 5JZEA 4D8EA 4BOPA 1PVJA 3W30A 3B21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D8I A;  4D8E A;  3BBA A;  4RKX A;  1DKI A;  2JTC A;  1PVJ A;  4D8B A;  3BB7 A;  2UZJ A; 
#chains in the Genus database with same CATH topology
 1PCI A;  4HXD B;  3H6S A;  1ME3 A;  4PP1 A;  3N4C A;  1EWL A;  1Q6K A;  3TMP A;  1MS6 A;  4BS5 A;  3H8B A;  1CPJ A;  1ITO A;  2AU1 A;  5EZQ A;  3V6C A;  2OUL A;  3HHI A;  3MHH A;  3K9M A;  2CB5 A;  2VHF A;  3DF0 A;  2E01 A;  3QJ3 A;  4RY2 A;  1EWP A;  3MOR A;  2DC7 A;  3PNR A;  3PHW A;  4R3D A;  1SNK A;  5EGW A;  2XU3 A;  2FT2 A;  4FK5 A;  1EF7 A;  3S3Q A;  4BS6 A;  4PP2 E;  1KHQ A;  2AS8 A;  1TLO A;  3P5W A;  4HWY A;  4X6H A;  5CVO B;  3IOQ A;  2J7Q A;  1MHW A;  1DKI A;  3AI8 A;  2HHN A;  3KW9 A;  4IUM A;  3CBK A;  1DEU A;  2R9M A;  3RVV A;  1U5I A;  1PBH A;  1AU3 A;  1THE A;  5K16 A;  4FJC A;  3IV2 A;  3HD3 A;  3MP2 A;  5FPW A;  2G6D A;  3F75 A;  1A6R A;  1EWM A;  4MZO A;  3OVZ A;  9PAP A;  2DC6 A;  3KSE A;  3RNV A;  1CJL A;  1CVZ A;  1PIP A;  1QDQ A;  4DMY A;  2P86 A;  1F2B A;  2BDL A;  4AXM A;  2XU4 A;  4K7C A;  3KX1 A;  4N8W A;  1KFX L;  2DZZ A;  1KFU L;  4D8I A;  1NQC A;  1YK8 A;  4BOP A;  4X6J A;  3W30 A;  3IMA A;  2AYO A;  4YVA A;  1MEM A;  2P7U A;  1NPZ A;  4Q8H A;  4W5C A;  3USV A;  4I05 A;  2IPP B;  4P6E A;  2YJC A;  1YK7 A;  2WBF X;  4BOQ A;  4YYW A;  3KWZ A;  1AEC A;  4QH6 A;  2AYN A;  2GHU A;  2G8J A;  1PPD A;  3RVW A;  1NLJ A;  1CS8 A;  3TRK A;  3PBH A;  3PRM A;  1GCB A;  4M0W A;  3P5X A;  3MHS A;  2H7J A;  4I07 A;  4YYS A;  2IBI A;  2E03 A;  1YVB A;  4BOS A;  2AUZ A;  2PAD A;  3PDF A;  3CH2 X;  1NB3 A;  4QRV A;  5PAD A;  1U9X A;  3PRP A;  5KO3 A;  1YZB A;  3S3R A;  3RVX A;  2P0R A;  3O65 A;  3LFY A;  1GEC E;  2E00 A;  4N4Z A;  2NQD B;  2HD5 A;  1M6D A;  2YJB A;  3QSD A;  1GMY A;  3N3G A;  1ZCM A;  3D6S A;  4RF0 A;  2XU1 A;  4GUA A;  2Y6E A;  3WXF A;  1STF E;  4P16 A;  2PBH A;  1BQI A;  4YYV A;  2R9N A;  5CVN B;  4EVX A;  3MJ5 A;  1Y08 A;  4MI7 A;  4N79 A;  3HHA A;  1K3B B;  8PCH A;  2ACT A;  2FRQ A;  4RNA A;  4PAD A;  1CQD A;  3W31 A;  1TL9 A;  1O0E A;  3BPF A;  1NB5 A;  4W4U A;  2AUX A;  4ZUX U;  1UKF A;  4YYR A;  4X6I A;  2PNS A;  3TNX A;  2G7Y A;  4XR7 A;  3BB7 A;  1HUC B;  1JQP A;  1Y4H A;  2FUD A;  2JQG R;  4G54 A;  1F2A A;  4QBB A;  3CBJ A;  4D8E A;  3K24 A;  1AU2 A;  1DF0 A;  1AYV A;  3B21 A;  2FE8 A;  1AU0 A;  3IUT A;  3OIS A;  4AXL A;  2FTD A;  2E02 A;  4BOZ A;  2DJG B;  1BP4 A;  1ICF A;  3P5V A;  4REZ A;  7PCK A;  1VSN A;  2YJ9 A;  4IP3 A;  1ZIV A;  2DOS A;  2OP3 A;  4KQT A;  3BCN A;  5JA7 A;  4D8B A;  1IWD A;  4I04 A;  1VJV A;  2F7D A;  1X9Y A;  2YJ8 A;  1KXR A;  3BY4 A;  5JH3 A;  3KWB X;  3HWN A;  5E6J A;  3I3T A;  1S4V A;  2PRE A;  1PAD A;  2C0Y A;  4OW0 A;  2DCC A;  4OEM A;  2ATO A;  1NL6 A;  2B1M A;  4RKX A;  1AYU A;  2DJF B;  2UZJ A;  1SG2 A;  1CB5 A;  2J7Q C;  4PI3 A;  4CDF B;  1SP4 B;  5F02 A;  4FIP A;  5EF4 A;  1EWO A;  2BTW B;  3ERV A;  4CDC B;  4CZW A;  2AVW A;  3U8E A;  3O0U A;  1YAL A;  1KHP A;  3IEJ A;  2DCA A;  3F5V A;  4CDE B;  3V6E A;  1CV8 A;  5CHT A;  2DCB A;  2BDZ A;  3LXS A;  4W5B A;  2R9F A;  3MTV A;  3OVX A;  3BBA A;  3ZUA A;  5EZS A;  1U2M A;  3P5U A;  4A5U A;  1ATK A;  3OF9 A;  3E9S A;  3BOW A;  5J94 A;  6PAD A;  1QXP A;  3PW3 A;  1GHH A;  4YV8 A;  5JZE A;  4BSQ A;  3B79 A;  2HH5 A;  1PVJ A;  3N3K A;  2BU3 A;  2DC9 A;  1YT7 A;  1GLO A;  4KLB A;  5CVM A;  1AIM A;  4BPV A;  1BGO A;  2JTC A;  3C0R A;  2B1N A;  3WXG A;  1U9V A;  4BQV A;  4MZS A;  2HXZ A;  3KFQ A;  1QMY A;  2NQG A;  4WA6 A;  3PHU A;  4OVZ A;  1MDW A;  1PPO A;  4CDD B;  2G8E A;  1BY8 A;  3NHE A;  3BWK A;  3OQC A;  3M99 A;  1PPP A;  2NQA A;  4RF1 A;  1F29 A;  1PE6 A;  3BC3 A;  4XUI A;  1FH0 A;  1CTE A;  2CIO A;  4OVZ B;  3H7D A;  2FYE A;  3H89 A;  4YYU A;  1ME4 A;  4Q8G A;  3K8U A;  3IFU A;  2GFO A;  1AYW A;  1XKG A;  5A24 A;  2NQI A;  1POP A;  4OEL A;  1CSB B;  2VHS A;  1MIR A;  3C9E A;  3PT2 A;  4DMX A;  4BOU A;  1F2C A;  2JQF R;  2Y5B A;  1U9W A;  3OF8 A;  3BPM A;  1U9Q X;  3H8C A;  2R6N A;  2O6X A;  3QT4 A;  3PHX A;  4MM3 B;  3E1Z B;  2FQ9 A;  2JRI A;  4QRX A;  2XU5 A;  4YYQ A;  4PT5 A;  3IHP A;  2AIM A;  3PSE A;  1QOL A;  2BTW A;  4MSX A;  4QRG A;  2DZY A;  1PPN A;  2OZ2 A;  3MTN A;  1AU4 A;  4ZTB A;  3GCB A;  2FO5 A;  3ZNH A;  1MEG A;  2F1G A;  2YJ2 A;  4XZX A;  2HWK A;  2AGA A;  2Z84 A;  2R9O A;  3KKU A;  4P6G A;  2DC8 A;  2FRA A;  2R9C A;  1PXV A;  2DCD A;  4WUR A;  3O1G A;  3WXE A;  3CH3 X;  5CHV A;  2ARY A;  1TU6 A;  3I06 A; 
#chains in the Genus database with same CATH homology
 2BU3 A;  4HXD B;  2JTC A;  3C0R A;  4BOZ A;  3TMP A;  4REZ A;  5EZQ A;  4IP3 A;  2DOS A;  4BOQ A;  4D8B A;  3BY4 A;  3PHU A;  4OVZ A;  3OQC A;  3TRK A;  3PHW A;  4R3D A;  4RF1 A;  5E6J A;  3PRM A;  4M0W A;  4OVZ B;  4OW0 A;  4BOS A;  3IFU A;  4RKX A;  2UZJ A;  3PRP A;  5KO3 A;  1YZB A;  3PT2 A;  4BOU A;  2J7Q A;  3O65 A;  1DKI A;  2J7Q C;  3PHX A;  4MM3 B;  4IUM A;  2BTW B;  2FE8 A;  2JRI A;  4RF0 A;  4GUA A;  4P16 A;  4PT5 A;  3PSE A;  4EVX A;  3MP2 A;  2BTW A;  3MJ5 A;  4MI7 A;  4ZTB A;  3MTV A;  4RNA A;  3BBA A;  3ZNH A;  3W31 A;  3RNV A;  5EZS A;  4XZX A;  2HWK A;  2AGA A;  2Z84 A;  4A5U A;  1UKF A;  3E9S A;  3BB7 A;  4WUR A;  4D8I A;  5JZE A;  4D8E A;  4BOP A;  1PVJ A;  3W30 A;  3B21 A; 
1DKIA 2JTCA 2UZJA 4D8BA 4D8EA 4D8IA 4RKXA 6UKDA 6UQDA
similar chains in the Genus database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1DKI A; 2JTC A; 2UZJ A; 4D8B A; 4D8E A; 4D8I A; 4RKX A; 6UKD A; 6UQD A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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