3BB7A

Structure of prevotella intermedia prointerpain a fragment 39-359 (mutant c154a)
Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
321
structure length
314
Chain Sequence
ANQLRELKQTHTYTVFGYTDGGFAVISADDLAPELLGVSESNFVETDNPSFKWWLKAIDEVITNAVKSNKPLNVIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPKTKKGRLITGAVATATAQVLNYFKYPVRGIGSHTVHYPANDPSGVAISADFGNTTYDWANMKDNYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDEQWMDIVFSELTKGHPLIYGGVDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYGKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (56-59)TVIII1 (71-74)S1 (42-47)TI1 (48-51)S2 (51-56)AH5 (272-285)TI12 (259-262)TIV6 (294-304)S3 (61-65)TI3 (67-70)S4 (73-77)S10 (289-293)AH1 (87-106)TI4 (116-119)S7 (176-180)TI5 (117-120)TIV1 (121-124)TIV4 (208-211)TI13 (313-316)AH3 (214-231)TVIa1 (135-138)3H1 (194-196)TIV2 (136-139)TI6 (137-140)TI7 (139-142)TI8 (145-148)AH2 (154-166)S8 (188-192)TVIII2 (169-172)TI10 (184-187)TI9 (181-184)TVIII3 (205-208)TI11 (237-240)TIV5 (238-241)AH4 (246-257)3H3 (267-269)S9 (263-266)S6 (148-149)TIV3 (179-182)3H2 (201-203)O1 (199-201)S11 (305-312)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Prevotella intermedia
publication title A New Autocatalytic Activation Mechanism for Cysteine Proteases Revealed by Prevotella intermedia Interpain A
pubmed doi rcsb
molecule keywords interpain A
total genus 89
structure length 314
sequence length 321
ec nomenclature
pdb deposition date 2007-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.910.30 Alpha Beta 2-Layer Sandwich Protein Binding, DinI Protein; Chain A Protein Binding, DinI Protein; Chain A 3bb7A02
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3bb7A01
4D8BA 4D8IA 4D8EA 3BB7A 3BBAA 1PVJA 4RKXA 2UZJA 2JTCA 1DKIA
chains in the Genus database with same CATH superfamily
3CBJA 3U8EA 4Q8HA 1NLJA 2P0RA 3RVWA 2F1GA 1CS8A 4I05A 1PPPA 4MI7A 2CIOA 2GFOA 2HD5A 2R9FA 2NQIA 2DCAA 3RVVA 4A5UA 1M6DA 2CB5A 2R9CA 2AYOA 3C0RA 4X6HA 2AS8A 1NL6A 2YJ8A 1MEMA 3MTVA 1THEA 3N3GA 4KLBA 2DC9A 2YJCA 3PRMA 3BWKA 3MTNA 3TRKA 4PADA 2AIMA 4D8IA 1AU0A 2E01A 4P6EA 3P5VA 4CDDB 3N3KA 4MM3B 4XUIA 1YALA 2Y5BA 3E9SA 4RF0A 4WURA 3BOWA 4DMYA 1ME4A 2E00A 3MORA 4P6GA 1CVZA 1F2BA 2DZYA 1KXRA 1A6RA 1KHPA 1Y4HA 2O6XA 3PNRA 3W30A 1EWMA 4R3DA 1PE6A 1VJVA 1U5IA 2DC6A 4QBBA 5EF4A 3BY4A 1ME3A 2XU1A 1YT7A 2DC7A 4I07A 4CDEB 2ATOA 3OF9A 2P86A 3KWZA 2BTWB 1CQDA 3IHPA 4OVZB 3IMAA 5CHTA 2DCCA 4BOQA 1TL9A 1MHWA 4BOPA 5EGWA 2FO5A 4G54A 1QMYA 2OZ2A 1BQIA 4YVAA 1POPA 3MHHA 3N4CA 1PADA 3RVXA 4YYSA 3H6SA 2HH5A 2OULA 1O0EA 4KQTA 1IWDA 2FT2A 1SG2A 3IEJA 3ERVA 1Q6KA 5J94A 1ZIVA 5CVOB 1AU2A 2F7DA 5A24A 6PADA 4X6JA 1BP4A 2E03A 1FH0A 1EWPA 2AGAA 3D6SA 3H7DA 1AYUA 3NHEA 3RNVA 1MIRA 2P7UA 1NB3A 2FE8A 4M0WA 3MP2A 1QXPA 2PBHA 2VHSA 3OQCA 4MZSA 3KW9A 3BC3A 1NB5A 3PHXA 2DOSA 1DEUA 4YYRA 2J7QC 3TNXA 4K7CA 4OW0A 4AXLA 1CJLA 2G8EA 3CH2X 1AECA 3O0UA 1MS6A 3KX1A 3AI8A 2JTCA 4QH6A 1U2MA 3W31A 1YK8A 2HWKA 3OVXA 5CVMA 4ZTBA 1TLOA 3QJ3A 4QRXA 4XZXA 2YJBA 4EVXA 1AIMA 5PADA 1PCIA 1SP4B 1S4VA 1SNKA 2ACTA 4HWYA 1F2CA 3PDFA 3HHAA 4RKXA 2B1NA 1KFXL 3WXEA 2R9NA 3PT2A 4BS6A 2H7JA 4ZUXU 4QRVA 3PHUA 3USVA 3B79A 4PI3A 2DCDA 2AUXA 2HHNA 3K9MA 1CSBB 3S3QA 1DF0A 2AUZA 2XU4A 2DZZA 1CTEA 4RNAA 1GECE 1HUCB 5K16A 3I3TA 2VHFA 4IP3A 1U9QX 3IV2A 3PBHA 2WBFX 2B1MA 3BPMA 4FJCA 4BOUA 2PADA 4HXDB 3KSEA 3V6CA 5E6JA 4BOZA 3E1ZB 2NQGA 4OEMA 4XR7A 2BU3A 1ICFA 1XKGA 4CDFB 1QDQA 3HWNA 2NQAA 1GCBA 4MSXA 2PNSA 4PP2E 4YYWA 3CH3X 3HHIA 1PIPA 1PPOA 9PAPA 2G8JA 3QT4A 5JH3A 5JZEA 2NQDB 3F75A 1YZBA 3KWBX 3H8BA 2FUDA 3WXGA 3PW3A 4N79A 2C0YA 4FK5A 1UKFA 3IOQA 3P5UA 4FIPA 3PRPA 3BB7A 2XU5A 1ZCMA 3MJ5A 1U9WA 5F02A 3O1GA 2JQFR 3TMPA 4REZA 3O65A 4GUAA 2FYEA 1MDWA 1PXVA 4W4UA 4CDCB 2R9MA 2AVWA 3IFUA 3OISA 5EZQA 1CB5A 1TU6A 2BTWA 3LXSA 1F2AA 3P5XA 2IPPB 1GLOA 2FQ9A 2OP3A 4OVZA 4Q8GA 1DKIA 1AU4A 1JQPA 2JRIA 4BS5A 3C9EA 1KFUL 1YVBA 1Y08A 5JA7A 4CZWA 2G6DA 3S3RA 3ZNHA 3K8UA 1X9YA 3GCBA 1GMYA 2DJGB 4WA6A 2XU3A 4BQVA 4W5CA 1KHQA 4I04A 1BGOA 4BSQA 2PREA 7PCKA 3DF0A 1PPDA 3H89A 1STFE 4P16A 3K24A 5CHVA 5FPWA 2FRAA 2YJ2A 1VSNA 2R9OA 1NQCA 1U9VA 3QSDA 5CVNB 4D8EA 1BY8A 1ATKA 2UZJA 2DJFB 2HXZA 1F29A 3MHSA 3OVZA 2IBIA 3KKUA 4YV8A 4N8WA 2JQGR 4PT5A 2BDLA 1AYVA 1CPJA 4YYQA 2Z84A 3BPFA 2AU1A 3M99A 1GHHA 3BBAA 3B21A 1U9XA 3BCNA 2BDZA 1YK7A 2DC8A 1EWLA 1MEGA 3IUTA 3PHWA 1K3BB 2E02A 3KFQA 3OF8A 3WXFA 1EWOA 5KO3A 3HD3A 2Y6EA 4YYVA 4RF1A 4YYUA 2R6NA 4RY2A 4X6IA 2YJ9A 3PSEA 2G7YA 1PPNA 1NPZA 1EF7A 4AXMA 2GHUA 4W5BA 1ITOA 3I06A 1AYWA 1AU3A 8PCHA 1PBHA 5EZSA 4MZOA 4D8BA 2FRQA 4BPVA 3CBKA 2J7QA 4BOSA 1CV8A 4N4ZA 4QRGA 3ZUAA 3F5VA 3P5WA 4OELA 4IUMA 2ARYA 3V6EA 2AYNA 2DCBA 2FTDA 4PP1A 1QOLA 3LFYA 3H8CA 4DMXA 1PVJA
chains in the Genus database with same CATH topology
4BOPA 3PHUA 4P16A 4RNAA 4D8EA 4MI7A 2UZJA 4IP3A 4BOUA 4HXDB 5E6JA 4BOZA 4A5UA 3C0RA 2BU3A 4PT5A 2AGAA 3MTVA 2Z84A 3RNVA 3BBAA 3PRMA 3B21A 3TRKA 2FE8A 4M0WA 5JZEA 4D8IA 3MP2A 3PHWA 1YZBA 3OQCA 5KO3A 4MM3B 1UKFA 4RF1A 3E9SA 4RF0A 3PRPA 4WURA 3BB7A 3PSEA 3PHXA 3MJ5A 2DOSA 3TMPA 2J7QC 4OW0A 4REZA 3O65A 4GUAA 3W30A 4R3DA 5EZQA 3IFUA 2JTCA 3W31A 2BTWA 2HWKA 4ZTBA 4XZXA 3BY4A 4OVZA 4EVXA 5EZSA 1DKIA 4D8BA 2JRIA 2J7QA 4BOSA 4IUMA 2BTWB 3ZNHA 4RKXA 4OVZB 1PVJA 4BOQA 3PT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D8B A;  4D8I A;  4D8E A;  3BB7 A;  3BBA A;  1PVJ A;  4RKX A;  2UZJ A;  2JTC A;  1DKI A; 
#chains in the Genus database with same CATH topology
 3CBJ A;  3U8E A;  4Q8H A;  1NLJ A;  2P0R A;  3RVW A;  2F1G A;  1CS8 A;  4I05 A;  1PPP A;  4MI7 A;  2CIO A;  2GFO A;  2HD5 A;  2R9F A;  2NQI A;  2DCA A;  3RVV A;  4A5U A;  1M6D A;  2CB5 A;  2R9C A;  2AYO A;  3C0R A;  4X6H A;  2AS8 A;  1NL6 A;  2YJ8 A;  1MEM A;  3MTV A;  1THE A;  3N3G A;  4KLB A;  2DC9 A;  2YJC A;  3PRM A;  3BWK A;  3MTN A;  3TRK A;  4PAD A;  2AIM A;  4D8I A;  1AU0 A;  2E01 A;  4P6E A;  3P5V A;  4CDD B;  3N3K A;  4MM3 B;  4XUI A;  1YAL A;  2Y5B A;  3E9S A;  4RF0 A;  4WUR A;  3BOW A;  4DMY A;  1ME4 A;  2E00 A;  3MOR A;  4P6G A;  1CVZ A;  1F2B A;  2DZY A;  1KXR A;  1A6R A;  1KHP A;  1Y4H A;  2O6X A;  3PNR A;  3W30 A;  1EWM A;  4R3D A;  1PE6 A;  1VJV A;  1U5I A;  2DC6 A;  4QBB A;  5EF4 A;  3BY4 A;  1ME3 A;  2XU1 A;  1YT7 A;  2DC7 A;  4I07 A;  4CDE B;  2ATO A;  3OF9 A;  2P86 A;  3KWZ A;  2BTW B;  1CQD A;  3IHP A;  4OVZ B;  3IMA A;  5CHT A;  2DCC A;  4BOQ A;  1TL9 A;  1MHW A;  4BOP A;  5EGW A;  2FO5 A;  4G54 A;  1QMY A;  2OZ2 A;  1BQI A;  4YVA A;  1POP A;  3MHH A;  3N4C A;  1PAD A;  3RVX A;  4YYS A;  3H6S A;  2HH5 A;  2OUL A;  1O0E A;  4KQT A;  1IWD A;  2FT2 A;  1SG2 A;  3IEJ A;  3ERV A;  1Q6K A;  5J94 A;  1ZIV A;  5CVO B;  1AU2 A;  2F7D A;  5A24 A;  6PAD A;  4X6J A;  1BP4 A;  2E03 A;  1FH0 A;  1EWP A;  2AGA A;  3D6S A;  3H7D A;  1AYU A;  3NHE A;  3RNV A;  1MIR A;  2P7U A;  1NB3 A;  2FE8 A;  4M0W A;  3MP2 A;  1QXP A;  2PBH A;  2VHS A;  3OQC A;  4MZS A;  3KW9 A;  3BC3 A;  1NB5 A;  3PHX A;  2DOS A;  1DEU A;  4YYR A;  2J7Q C;  3TNX A;  4K7C A;  4OW0 A;  4AXL A;  1CJL A;  2G8E A;  3CH2 X;  1AEC A;  3O0U A;  1MS6 A;  3KX1 A;  3AI8 A;  2JTC A;  4QH6 A;  1U2M A;  3W31 A;  1YK8 A;  2HWK A;  3OVX A;  5CVM A;  4ZTB A;  1TLO A;  3QJ3 A;  4QRX A;  4XZX A;  2YJB A;  4EVX A;  1AIM A;  5PAD A;  1PCI A;  1SP4 B;  1S4V A;  1SNK A;  2ACT A;  4HWY A;  1F2C A;  3PDF A;  3HHA A;  4RKX A;  2B1N A;  1KFX L;  3WXE A;  2R9N A;  3PT2 A;  4BS6 A;  2H7J A;  4ZUX U;  4QRV A;  3PHU A;  3USV A;  3B79 A;  4PI3 A;  2DCD A;  2AUX A;  2HHN A;  3K9M A;  1CSB B;  3S3Q A;  1DF0 A;  2AUZ A;  2XU4 A;  2DZZ A;  1CTE A;  4RNA A;  1GEC E;  1HUC B;  5K16 A;  3I3T A;  2VHF A;  4IP3 A;  1U9Q X;  3IV2 A;  3PBH A;  2WBF X;  2B1M A;  3BPM A;  4FJC A;  4BOU A;  2PAD A;  4HXD B;  3KSE A;  3V6C A;  5E6J A;  4BOZ A;  3E1Z B;  2NQG A;  4OEM A;  4XR7 A;  2BU3 A;  1ICF A;  1XKG A;  4CDF B;  1QDQ A;  3HWN A;  2NQA A;  1GCB A;  4MSX A;  2PNS A;  4PP2 E;  4YYW A;  3CH3 X;  3HHI A;  1PIP A;  1PPO A;  9PAP A;  2G8J A;  3QT4 A;  5JH3 A;  5JZE A;  2NQD B;  3F75 A;  1YZB A;  3KWB X;  3H8B A;  2FUD A;  3WXG A;  3PW3 A;  4N79 A;  2C0Y A;  4FK5 A;  1UKF A;  3IOQ A;  3P5U A;  4FIP A;  3PRP A;  3BB7 A;  2XU5 A;  1ZCM A;  3MJ5 A;  1U9W A;  5F02 A;  3O1G A;  2JQF R;  3TMP A;  4REZ A;  3O65 A;  4GUA A;  2FYE A;  1MDW A;  1PXV A;  4W4U A;  4CDC B;  2R9M A;  2AVW A;  3IFU A;  3OIS A;  5EZQ A;  1CB5 A;  1TU6 A;  2BTW A;  3LXS A;  1F2A A;  3P5X A;  2IPP B;  1GLO A;  2FQ9 A;  2OP3 A;  4OVZ A;  4Q8G A;  1DKI A;  1AU4 A;  1JQP A;  2JRI A;  4BS5 A;  3C9E A;  1KFU L;  1YVB A;  1Y08 A;  5JA7 A;  4CZW A;  2G6D A;  3S3R A;  3ZNH A;  3K8U A;  1X9Y A;  3GCB A;  1GMY A;  2DJG B;  4WA6 A;  2XU3 A;  4BQV A;  4W5C A;  1KHQ A;  4I04 A;  1BGO A;  4BSQ A;  2PRE A;  7PCK A;  3DF0 A;  1PPD A;  3H89 A;  1STF E;  4P16 A;  3K24 A;  5CHV A;  5FPW A;  2FRA A;  2YJ2 A;  1VSN A;  2R9O A;  1NQC A;  1U9V A;  3QSD A;  5CVN B;  4D8E A;  1BY8 A;  1ATK A;  2UZJ A;  2DJF B;  2HXZ A;  1F29 A;  3MHS A;  3OVZ A;  2IBI A;  3KKU A;  4YV8 A;  4N8W A;  2JQG R;  4PT5 A;  2BDL A;  1AYV A;  1CPJ A;  4YYQ A;  2Z84 A;  3BPF A;  2AU1 A;  3M99 A;  1GHH A;  3BBA A;  3B21 A;  1U9X A;  3BCN A;  2BDZ A;  1YK7 A;  2DC8 A;  1EWL A;  1MEG A;  3IUT A;  3PHW A;  1K3B B;  2E02 A;  3KFQ A;  3OF8 A;  3WXF A;  1EWO A;  5KO3 A;  3HD3 A;  2Y6E A;  4YYV A;  4RF1 A;  4YYU A;  2R6N A;  4RY2 A;  4X6I A;  2YJ9 A;  3PSE A;  2G7Y A;  1PPN A;  1NPZ A;  1EF7 A;  4AXM A;  2GHU A;  4W5B A;  1ITO A;  3I06 A;  1AYW A;  1AU3 A;  8PCH A;  1PBH A;  5EZS A;  4MZO A;  4D8B A;  2FRQ A;  4BPV A;  3CBK A;  2J7Q A;  4BOS A;  1CV8 A;  4N4Z A;  4QRG A;  3ZUA A;  3F5V A;  3P5W A;  4OEL A;  4IUM A;  2ARY A;  3V6E A;  2AYN A;  2DCB A;  2FTD A;  4PP1 A;  1QOL A;  3LFY A;  3H8C A;  4DMX A;  1PVJ A; 
#chains in the Genus database with same CATH homology
 4BOP A;  3PHU A;  4P16 A;  4RNA A;  4D8E A;  4MI7 A;  2UZJ A;  4IP3 A;  4BOU A;  4HXD B;  5E6J A;  4BOZ A;  4A5U A;  3C0R A;  2BU3 A;  4PT5 A;  2AGA A;  3MTV A;  2Z84 A;  3RNV A;  3BBA A;  3PRM A;  3B21 A;  3TRK A;  2FE8 A;  4M0W A;  5JZE A;  4D8I A;  3MP2 A;  3PHW A;  1YZB A;  3OQC A;  5KO3 A;  4MM3 B;  1UKF A;  4RF1 A;  3E9S A;  4RF0 A;  3PRP A;  4WUR A;  3BB7 A;  3PSE A;  3PHX A;  3MJ5 A;  2DOS A;  3TMP A;  2J7Q C;  4OW0 A;  4REZ A;  3O65 A;  4GUA A;  3W30 A;  4R3D A;  5EZQ A;  3IFU A;  2JTC A;  3W31 A;  2BTW A;  2HWK A;  4ZTB A;  4XZX A;  3BY4 A;  4OVZ A;  4EVX A;  5EZS A;  1DKI A;  4D8B A;  2JRI A;  2J7Q A;  4BOS A;  4IUM A;  2BTW B;  3ZNH A;  4RKX A;  4OVZ B;  1PVJ A;  4BOQ A;  3PT2 A; 
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