The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
203
|
structure length |
203
|
Chain Sequence |
ADVYDIGRGAVMYVAGGKVSWAPRGGNEVKFEPVPKELKLVANRLHTSFPPHHVVDMSKFTFITPGSGVSMRVEYQYGCLPADTVPEGNCWWRLLDSLPPEVQYKEIRHANQFGYQTKHGVPGKYLQRRLQVNGLRAVTDTHGPIVIQYFSVKESWIRHLKLVEEPSLPGFEDLLRIRVEPNTSPLAGKDEKIFRFGSHKWYG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of porcine reproductive and respiratory syndrome virus nonstructural protein Nsp1beta reveals a novel metal-dependent nuclease
pubmed doi rcsb |
| molecule keywords |
Papain-like cysteine protease
|
| molecule tags |
Hydrolase
|
| source organism |
Porcine reproductive and respiratory syndrome virus
|
| total genus |
42
|
| structure length |
203
|
| sequence length |
203
|
| ec nomenclature | |
| pdb deposition date | 2010-04-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05411 | Peptidase_C32 | Equine arteritis virus putative proteinase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Transcriptional Co-activator pc4; Chain A | Transcriptional Co-activator pc4; Chain A | ||
| Alpha Beta | Alpha-Beta Complex | Cathepsin B; Chain A | Cathepsin B; Chain A |
#chains in the Genus database with same CATH superfamily 3MTV A; #chains in the Genus database with same CATH topology 4MZO A; 3LXS A; 1M6D A; 3P5U A; 1Q6K A; 1BQI A; 2UZJ A; 4CDF B; 3H8B A; 3HHA A; 2HWK A; 5CVN B; 3F75 A; 3PRM A; 1YVB A; 3N1I A; 2J7Q C; 4KLB A; 4QRG A; 4BSQ A; 3PNR A; 1THE A; 4PP1 A; 2AU1 A; 1DF0 A; 4W4U A; 3OVZ A; 5FPW A; 2FTD A; 2JQF R; 4XUI A; 4PAD A; 1CTE A; 1KHP A; 2GID B; 4YYV A; 2BU3 A; 2NQA A; 2G8E A; 1NQC A; 2AIM A; 4RKX A; 3H8C A; 3OF9 A; 1JQP A; 1CB5 A; 3D6S A; 4QH6 A; 1FH0 A; 3N1J A; 2IPP B; 1ZIV A; 4BOQ A; 3HWN A; 3BC3 A; 4N8W A; 3S3R A; 2DZZ A; 4CDC B; 1NB3 A; 2G7Y A; 2E01 A; 2JTC A; 3CBJ A; 2GJE D; 2OUL A; 4MM3 B; 1HUC B; 1IWD A; 1BGO A; 4D8B A; 2DZY A; 3KWZ A; 2Z84 A; 2XU5 A; 3KWB X; 4BOP A; 5JA7 A; 2Y6E A; 3C0R A; 4BQV A; 2C0Y A; 2JQG R; 3P5V A; 3W30 A; 1MIR A; 3QJ3 A; 3RNV A; 1KXR A; 4BPV A; 2H7J A; 1ZCM A; 5CVM A; 8PCH A; 3K9M A; 1U9Q X; 3OQC A; 4BOU A; 3KW9 A; 3ZNH A; 3H89 A; 4Q8H A; 3BCN A; 1AYU A; 1F2A A; 1KFU L; 3OIS A; 2DC7 A; 5EF4 A; 5KO3 A; 4QBB A; 2AVW A; 1PXV A; 3B21 A; 2DOS A; 2YJB A; 1CS8 A; 2B1N A; 4USG A; 1QDQ A; 1YAL A; 5EGW A; 2P0R A; 2PNS A; 3BBA A; 4W5B A; 4ZTB A; 1YK7 A; 4BOZ A; 3O65 A; 2HH5 A; 5A24 A; 2DC9 A; 4W5C A; 2F1G A; 4I05 A; 1NL6 A; 4G54 A; 3WXE A; 2FO5 A; 3N1K A; 1YK8 A; 3GCB A; 1U5I A; 4OEL A; 4IUM A; 1PCF A; 4YYQ A; 3P5X A; 4OW0 A; 4FJC A; 2AYN A; 2R9F A; 1U9W A; 1DEU A; 2B1M A; 1YZB A; 5JZE A; 5J94 A; 2NQD B; 3MTN A; 4J38 A; 1KFX L; 3IMA A; 5E6J A; 3IFU A; 4MZS A; 2FE8 A; 4REZ A; 2YJC A; 1AYV A; 4BS5 A; 2R9N A; 1SP4 B; 3IV2 A; 1VJV A; 4FIP A; 3TNX A; 3C9E A; 5CHV A; 2G8J A; 2GID A; 3OVX A; 4AXM A; 2HHN A; 3CBK A; 4QRV A; 1QMY A; 4X6I A; 4BOB A; 1PAD A; 4M0W A; 3PHX A; 1AIM A; 3MHS A; 1F2B A; 3KSE A; 1CJL A; 4ZUX U; 2R6N A; 4XZX A; 3HD3 A; 3IHP A; 3CM1 A; 1QXP A; 3H7D A; 1BP4 A; 1CPJ A; 1PCI A; 2PBH A; 4YVA A; 3BOW A; 2XU3 A; 4AGH A; 3PW3 A; 1PPD A; 4P16 A; 3BB7 A; 4P6G A; 1MEM A; 1TL9 A; 1Y08 A; 3DF0 A; 3H6S A; 4K7C A; 2AUZ A; 2AS8 A; 4RF1 A; 2OZ2 A; 2GIA B; 4RF0 A; 2YJ2 A; 2IT9 A; 3N1H A; 2FUD A; 3R9Z A; 4YYU A; 3K8U A; 1ICF A; 1MHW A; 1F2C A; 1NB5 A; 1AU0 A; 3O0U A; 1POP A; 1S4V A; 1ME3 A; 5EZQ A; 1PE6 A; 4IP3 A; 2YJ8 A; 4X6J A; 3PHW A; 1ATK A; 2HXZ A; 4KOO A; 2E02 A; 3MJ5 A; 1MDW A; 3BPF A; 4OVZ A; 4OVZ B; 5EZS A; 4XR7 A; 4MSX A; 3E9S A; 1QOL A; 2XU4 A; 2DC8 A; 2PRE A; 1PPO A; 1GLO A; 4FK5 A; 3HHI A; 2F7D A; 3PSE A; 4YYR A; 1KHQ A; 2NQG A; 3PBH A; 4BS6 A; 4WUR A; 3N3G A; 6PAD A; 3AI8 A; 3PDF A; 2FRA A; 3MP2 A; 1PBH A; 2DJG B; 2BDZ A; 3IOQ A; 2HD5 A; 2AYO A; 3V6C A; 1F29 A; 1AU3 A; 1U9V A; 3MHH A; 2E03 A; 2GJE A; 5FGP A; 3IEJ A; 3IUT A; 4BHM A; 4KOP A; 2AUX A; 2DC6 A; 1K3B B; 4RNA A; 3CH3 X; 2P86 A; 4KOQ A; 1UKF A; 3F5V A; 3QSD A; 1A6R A; 1U9X A; 2FRQ A; 1BY8 A; 1PVJ A; 1L3A A; 4BOD A; 4WA6 A; 1SNK A; 3NHE A; 1XKG A; 2FT2 A; 2FQ9 A; 4CZW A; 1CVZ A; 1DKI A; 1AEC A; 1CQD A; 3CH2 X; 9PAP A; 2PHE A; 3KKU A; 1Y4H A; 4N4Z A; 2IBI A; 2VHS A; 2R9M A; 1VSN A; 1GCB A; 2VHF A; 3N3K A; 3WXG A; 5CHT A; 2JRI A; 3LFY A; 2YJ9 A; 3U8E A; 4CDE B; 1PPP A; 5F02 A; 3TRK A; 3WXF A; 1NPZ A; 1EWL A; 3BY4 A; 3KX1 A; 3O1G A; 2WBF X; 3OBH A; 1AYW A; 3M99 A; 3P5W A; 4BG7 A; 3OF8 A; 4HXD B; 4BF3 A; 4BOS A; 4BXM A; 4MI7 A; 1EWM A; 2P7U A; 1YT7 A; 2ARY A; 4I04 A; 4PI3 A; 2GIA A; 4P6E A; 4A5U A; 2G6D A; 2NQI A; 1PIP A; 3V6E A; 1EWO A; 1O0E A; 4I07 A; 2PAD A; 7PCK A; 4D8I A; 3RVX A; 3PT2 A; 2ACT A; 3BWK A; 1NLJ A; 2GHU A; 3K44 A; 2J7Q A; 1X9Y A; 2OP3 A; 2AGA A; 4Q8G A; 2Y5B A; 1TLO A; 1EF7 A; 3K24 A; 2NVN A; 2CB5 A; 2XU1 A; 3RVW A; 1CSB B; 1MS6 A; 1TU6 A; 3PRP A; 2ATO A; 5K16 A; 1AU4 A; 3W31 A; 1GEC E; 3MOR A; 2DJF B; 3N1L A; 2DCC A; 4CDD B; 4OEM A; 2DCB A; 4PT5 A; 2DCD A; 4DMY A; 2R9O A; 1GMY A; 4YYW A; 2E00 A; 3N4C A; 3TMP A; 3RA0 A; 2M4F A; 1ITO A; 1MEG A; 4DMX A; 2O6X A; 3PHU A; 2BTW A; 2BTW B; 3S3Q A; 1CV8 A; 2R9C A; 3B79 A; 2GFO A; 4AXL A; 3I06 A; 3MTV A; 4QRX A; 4YV8 A; 4R3D A; 2BDL A; 3E1Z B; 5PAD A; 1EWP A; 4YYS A; 3I3T A; 5JH3 A; 3ERV A; 1ME4 A; 5CVO B; 3RVV A; 3R9Y A; 4HWY A; 4RY2 A; 1PPN A; 2CIO A; 2FYE A; 3USV A; 3QT4 A; 2DCA A; 4N79 A; 1AU2 A; 4X6H A; 3BPM A; 3ZUA A; 2C62 A; 1STF E; 4D8E A; 3KFQ A; 4GUA A; 4PP2 E; #chains in the Genus database with same CATH homology 3BBA A; 3BY4 A; 2UZJ A; 3OBH A; 4ZTB A; 4BOZ A; 2HWK A; 3O65 A; 4HXD B; 5EZQ A; 3PRM A; 4BF3 A; 4BOS A; 4IP3 A; 4BXM A; 3PHW A; 2J7Q C; 4MI7 A; 3MJ5 A; 4OVZ A; 2GIA A; 4OVZ B; 5EZS A; 4A5U A; 3E9S A; 4IUM A; 4OW0 A; 3PSE A; 2GID B; 1YZB A; 4D8I A; 4WUR A; 3PT2 A; 2BU3 A; 5JZE A; 4J38 A; 4RKX A; 3K44 A; 2J7Q A; 5E6J A; 3MP2 A; 2AGA A; 3IFU A; 2FE8 A; 4REZ A; 4BOQ A; 3PRP A; 2GJE A; 5FGP A; 2JTC A; 3W31 A; 2GJE D; 4RNA A; 4MM3 B; 2GID A; 1UKF A; 4PT5 A; 4D8B A; 2Z84 A; 4BOP A; 4BOB A; 4M0W A; 3PHX A; 1PVJ A; 3TMP A; 4BOD A; 3C0R A; 2M4F A; 3W30 A; 3PHU A; 4XZX A; 2BTW A; 2BTW B; 3RNV A; 3MTV A; 3CM1 A; 1DKI A; 4R3D A; 3OQC A; 4BOU A; 3ZNH A; 4P16 A; 3BB7 A; 5KO3 A; 4RF1 A; 3B21 A; 2GIA B; 4RF0 A; 2JRI A; 2DOS A; 3TRK A; 4D8E A; 4GUA A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
