1P42 | Genus

Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	90
sequence length	267
structure length	267
Chain Sequence	GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Aquifex aeolicus
publication title	Crystal Structure of LpxC, a Zinc-Dependent Deacetylase Essential for Endotoxin Biosynthesis pubmed doi rcsb
molecule keywords	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus	90
structure length	267
sequence length	267
chains with identical sequence	B
ec nomenclature	ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date	2003-04-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03331	LpxC	UDP-3-O-acyl N-acetylglycosamine deacetylase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.230.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	lpxc deacetylase, domain 1	1p42A01
3.30.1700.10	Alpha Beta	2-Layer Sandwich	lpxc deacetylase, domain 1	lpxc deacetylase, domain 2	1p42A02

5DRPA 4OKGA 2JT2A 4FW6A 3P3GA 4LCHA 2VESA 3PS1A 4FW5A 4LCGA 4MDTA 3UHMA 2J65A 4U3DA 4FW4A 3PS2A 4ISAA 2GO4A 4LCFA 3NZKA 3P76A 2IESA 5DRRA 4OZEA 3P3EA 2GO3A 1P42A 4J3DA 2O3ZA 2IERA 4MQYA 5DRQA 4IS9A 1YHCA 4FW3A 3PS3A 1XXEA 4FW7A 5DROA 4U3BA 3U1YA 1YH8A 3P3CA
chains in the Genus database with same CATH superfamily

2XEXA 4DPTA 2C38A 3OTOI 3OTOE 1ZXNA 2VESA 2BM1A 1NHIA 3LNUA 4DU8A 2Q2EB 1I94I 1I94E 3L7ZA 4U3DA 2NPFA 1S16A 3PS2A 3M85G 4JG4A 2F1DA 3PYEA 3ZKDA 4LOMA 1IBLI 1FI4A 1IBLE 1N34I 3P06A 5LMNI 3J81Q 4J3DA 2CGEA 5LMNE 4MYTA 5JEAB 4DV3E 2NN6F 4B3SE 4B3SI 4GKKI 1YHCA 4GKKE 4YHHI 4YHHE 5DROA 4IZKA 5JEAE 3LTOA 1KVKA 5C0XD 3PYFA 5K36C 1BKNA 4ISAA 1ZXMA 3WU6A 1DARA 1XMQI 1XMQE 1R6MA 3P3EA 2PNLA 4USMA 2V34A 4M1KA 1USVA 4LF5I 4JI6I 4LF5E 4JI6E 3J7AM 1R6LA 1H74A 2PNZA 4FW7A 2BM0A 4MU1A 2VF3A 2F4VI 2BR2B 2F4VE 1UEKA 3ZZTA 2NN6E 4P52A 4JI7I 4JI7E 2CG9A 4WUCA 4JI4I 4JI4E 3NZKA 4DR2I 4DR2E 2JEAA 1Y5YA 5DRRA 2OI2A 4LFBI 4IS9A 4LFBE 1N32I 2C38B 1N32E 4NXNI 3DD6A 1Z0BA 3HKMA 5GMEA 4NXNE 1A6FA 2PO1A 2JEBA 4DV0I 3U1YA 4HYMA 5K36E 4DPXA 3QT5A 1UDNA 3Q6MA 1XNRI 5C0XA 1XNRE 2DEIA 3K17A 2UXDI 2UXDE 1N33I 1N33E 4B3TI 4UT4A 4B3TE 4HACA 2GO4A 4HY1A 3QT6A 4OO1F 2HK2A 4OZEA 2GO3A 4IZKB 1Y6ZA 4NBQA 4DV2I 2CVEA 4DV2E 2O1UA 4URLA 2VQFI 2VQFE 4FW6A 1YH8A 5DRPA 2BA1G 2UUAE 2LJPA 1B62A 3V2UC 2BA1D 4DV1I 4DV1E 1Z0CA 3WU4A 2WNRA 3B82A 3PYDA 1RHYA 1Y4UA 4OX9I 4OX9E 2PO0A 5JEAF 4BA2B 3GMEA 2IOQA 1N0UA 2Z5CA 2HKEA 1Z5BA 4JI8I 4JI8E 5L3JA 4OKGA 4IFDD 4P7AA 4LCHA 4DV5I 4FW5A 4DV5E 2NN6A 4WUDA 4MU4A 4X64I 4X64E 4PRXA 3M85D 4DR5I 4DR5E 4LFCI 2PO1B 3CWVA 4B3MI 2JEBB 4LFCE 4B3ME 1U2RA 5DRQA 1FNMA 2UUCI 2DEJA 4IZJD 1J5EI 2UUCE 4DV4I 4DV3I 1J5EE 4DV4E 2HHHI 4DXLA 2HHHE 1VI7A 3J80C 3P3CA 4BA1A 3GCMA 4HACB 4OO1D 3JAMC 3PS1A 2ZITA 3PYGA 1N0VC 5A2QQ 4RPFA 5K36F 2C37B 4I3HA 4JI3I 4JI3E 4JI2I 2HFSA 4JI2E 1OJ4A 2WP8A 1VISA 3M6AA 4EMDA 4DUYI 4LF8I 3WU5A 4DUYE 1Z0GA 4LF8E 4IFDA 5IT9C 2JE6B 1HNWI 5JEAD 1HNWE 2V2QA 1NHHA 2HK3A 1H72C 1HR0I 4NXME 1HR0E 4NXMI 3LPSA 3H1CA 3UHMA 3PRYA 4JI1I 4PU9A 1QZRA 4JI1E 4LPFA 2V2ZA 1H7SA 4KQVA 1H73A 1OYPA 1Y4SA 4IZJA 1Z59A 1XMOI 1XMOE 2A2CA 1Z5AA 2VQEI 3M7NG 1ZM4A 3F0NA 2VQEE 4OO1A 5FLXC 3B78A 3L7ZB 4LF9I 4KHPI 4KHPE 2UUBI 4LF9E 2UXBI 2UUBE 2UXBE 5IWAI 1NHJA 4DUZI 5IWAE 3WU3A 5ELWA 4DUZE 4IFDC 4LF6E 1Z0TA 2NN6D 4Z7YA 1ZM9A 4FWDA 3GLLA 4DV6I 4DV6E 4DR3I 4DR3E 4FWHA 4ZVIA 3PS3A 4MYUA 4JI5E 2R42A 3ZZ0A 1ZM2A 4U3BA 5JEAA 1S4EA 5K36D 4YY3I 4YY3E 2UUAI 1FWKA 1OYSA 1XNQE 2CZ9A 3J80Q 4GKJI 4GKJE 2WW4A 1HK7A 2ZBKB 4X62I 4X62E 2AJ4A 2C39A 3P76A 5C0XC 4MU3A 2O1VA 2HFUA 1MX0A 2IESA 4IFDB 2PNZB 4X65I 2IERA 4X65E 2E1RA 2Z5BA 4DR4I 4AQYE 2PNMA 4DR4E 4JYAE 2Z5EA 3T1YI 3T1YE 1EI1A 3K85A 5FWKA 3GONA 4MDTA 1RREA 2J65A 2JEAB 4FW4A 2BR2A 3D4JA 4UTGA 4XTJA 1FWLA 3ZZUA 4DPWA 5IT9Q 1UDOA 3QT7A 2E5LI 1KIJA 3T1HI 2E5LE 3T1HE 4QNKA 3QT8A 2GQ0A 5EL9A 1K47A 1Z0EA 1PKPA 1D6TA 5C0XB 5K36A 1ZM3A 4R1FA 4JI0I 4JI0E 1NZ0A 1IBKI 1IBKE 5C0XE 4K0KI 1HNZI 4K0KE 3Q6NA 4DPUA 1HNZE 1E3HA 1EA6A 5FLXQ 4LCFA 3V5RA 4LF4I 2NN6C 4LF4E 2A2DA 1N34E 4GQUA 5DNXA 1P42A 4Z7CA 2ZM6I 1HNXI 2ZM6E 1HNXE 4WUBA 4LFAI 4LFAE 3CDJA 2X36A 1B63A 3ZM7A 1PIEA 2C39B 2WNRB 4MU0A 2O1TA 2PO0B 1MG7A 2Z5CB 2IOPA 2Z5BB 5BR8I 5EKWA 2GS8A 5BR8E 1Z0WA 3B4TA 1Z5CA 4JV5I 4JV5E 5DNLA 3ZKBA 4BA2A 4DR1I 2NN6B 3H4LA 4DR1E 1ELOA 1E3PA 1USUA 1KKHA 4B3RI 4B3RE 3M7ND 2HKJA 1N36I 2JT2A 2PO2A 1N36E 1IBMI 1IBME 2R3VA 3J81C 4LF6I 2EFGA 2BA0G 3CDIA 4X66I 4X66E 2BA0D 3KRNA 4IFDF 4PRVA 5K36B 1OYRA 4AIMA 4MQYA 3J7AG 5LMUI 5LMUE 2V8PA 4BA1B 4FW3A 4DV0E 4JI5I 2AE8A 5A2QC 4DV7I 4DV7E 1KTVA 4AIDA 2X7IA 4LCGA 4FN5A 1XNQI 2V2VA 3Q1QA 2J7KA 4OO1C 2WP8B 3JAMQ 4DU7A 1MU5A 5LL6R 2O3ZA 4N3OA 5C0XF 1UDQA 2C37A 4AM3A 1Y60A 4AQYI 3B8HA 1FKAE 3U1KA 1UDSA 4IFDE 2O1WA 4JYAI 2UU9I 1RR9A 2UU9E 3P3GA 4FWGA 4DPYA 4FW9A 4USKA 2JE6A 5JEAC 1WUUA 2UXCI 4ED4A 4IZJB 2UXCE 4DR6I 4DR6E 4DR7I 2BV3A 3HJCA 4DR7E 1PVGA 1FJGI 1Z0VA 1XHKA 5GMDA 4LF7I 4LF7E 1FJGE 4OO1B 2PO2B 3HULA 1H7UA 1XXEA 4QNJA 3K1JA 4HXZA 4OO1E
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5DRP A;  4OKG A;  2JT2 A;  4FW6 A;  3P3G A;  4LCH A;  2VES A;  3PS1 A;  4FW5 A;  4LCG A;  4MDT A;  3UHM A;  2J65 A;  4U3D A;  4FW4 A;  3PS2 A;  4ISA A;  2GO4 A;  4LCF A;  3NZK A;  3P76 A;  2IES A;  5DRR A;  4OZE A;  3P3E A;  2GO3 A;  1P42 A;  4J3D A;  2O3Z A;  2IER A;  4MQY A;  5DRQ A;  4IS9 A;  1YHC A;  4FW3 A;  3PS3 A;  1XXE A;  4FW7 A;  5DRO A;  4U3B A;  3U1Y A;  1YH8 A;  3P3C A; 
#chains in the Genus database with same CATH topology
 2XEX A;  4DPT A;  2C38 A;  3OTO I;  3OTO E;  1ZXN A;  2VES A;  2BM1 A;  1NHI A;  3LNU A;  4DU8 A;  2Q2E B;  1I94 I;  1I94 E;  3L7Z A;  4U3D A;  2NPF A;  1S16 A;  3PS2 A;  3M85 G;  4JG4 A;  2F1D A;  3PYE A;  3ZKD A;  4LOM A;  1IBL I;  1FI4 A;  1IBL E;  1N34 I;  3P06 A;  5LMN I;  3J81 Q;  4J3D A;  2CGE A;  5LMN E;  4MYT A;  5JEA B;  4DV3 E;  2NN6 F;  4B3S E;  4B3S I;  4GKK I;  1YHC A;  4GKK E;  4YHH I;  4YHH E;  5DRO A;  4IZK A;  5JEA E;  3LTO A;  1KVK A;  5C0X D;  3PYF A;  5K36 C;  1BKN A;  4ISA A;  1ZXM A;  3WU6 A;  1DAR A;  1XMQ I;  1XMQ E;  1R6M A;  3P3E A;  2PNL A;  4USM A;  2V34 A;  4M1K A;  1USV A;  4LF5 I;  4JI6 I;  4LF5 E;  4JI6 E;  3J7A M;  1R6L A;  1H74 A;  2PNZ A;  4FW7 A;  2BM0 A;  4MU1 A;  2VF3 A;  2F4V I;  2BR2 B;  2F4V E;  1UEK A;  3ZZT A;  2NN6 E;  4P52 A;  4JI7 I;  4JI7 E;  2CG9 A;  4WUC A;  4JI4 I;  4JI4 E;  3NZK A;  4DR2 I;  4DR2 E;  2JEA A;  1Y5Y A;  5DRR A;  2OI2 A;  4LFB I;  4IS9 A;  4LFB E;  1N32 I;  2C38 B;  1N32 E;  4NXN I;  3DD6 A;  1Z0B A;  3HKM A;  5GME A;  4NXN E;  1A6F A;  2PO1 A;  2JEB A;  4DV0 I;  3U1Y A;  4HYM A;  5K36 E;  4DPX A;  3QT5 A;  1UDN A;  3Q6M A;  1XNR I;  5C0X A;  1XNR E;  2DEI A;  3K17 A;  2UXD I;  2UXD E;  1N33 I;  1N33 E;  4B3T I;  4UT4 A;  4B3T E;  4HAC A;  2GO4 A;  4HY1 A;  3QT6 A;  4OO1 F;  2HK2 A;  4OZE A;  2GO3 A;  4IZK B;  1Y6Z A;  4NBQ A;  4DV2 I;  2CVE A;  4DV2 E;  2O1U A;  4URL A;  2VQF I;  2VQF E;  4FW6 A;  1YH8 A;  5DRP A;  2BA1 G;  2UUA E;  2LJP A;  1B62 A;  3V2U C;  2BA1 D;  4DV1 I;  4DV1 E;  1Z0C A;  3WU4 A;  2WNR A;  3B82 A;  3PYD A;  1RHY A;  1Y4U A;  4OX9 I;  4OX9 E;  2PO0 A;  5JEA F;  4BA2 B;  3GME A;  2IOQ A;  1N0U A;  2Z5C A;  2HKE A;  1Z5B A;  4JI8 I;  4JI8 E;  5L3J A;  4OKG A;  4IFD D;  4P7A A;  4LCH A;  4DV5 I;  4FW5 A;  4DV5 E;  2NN6 A;  4WUD A;  4MU4 A;  4X64 I;  4X64 E;  4PRX A;  3M85 D;  4DR5 I;  4DR5 E;  4LFC I;  2PO1 B;  3CWV A;  4B3M I;  2JEB B;  4LFC E;  4B3M E;  1U2R A;  5DRQ A;  1FNM A;  2UUC I;  2DEJ A;  4IZJ D;  1J5E I;  2UUC E;  4DV4 I;  4DV3 I;  1J5E E;  4DV4 E;  2HHH I;  4DXL A;  2HHH E;  1VI7 A;  3J80 C;  3P3C A;  4BA1 A;  3GCM A;  4HAC B;  4OO1 D;  3JAM C;  3PS1 A;  2ZIT A;  3PYG A;  1N0V C;  5A2Q Q;  4RPF A;  5K36 F;  2C37 B;  4I3H A;  4JI3 I;  4JI3 E;  4JI2 I;  2HFS A;  4JI2 E;  1OJ4 A;  2WP8 A;  1VIS A;  3M6A A;  4EMD A;  4DUY I;  4LF8 I;  3WU5 A;  4DUY E;  1Z0G A;  4LF8 E;  4IFD A;  5IT9 C;  2JE6 B;  1HNW I;  5JEA D;  1HNW E;  2V2Q A;  1NHH A;  2HK3 A;  1H72 C;  1HR0 I;  4NXM E;  1HR0 E;  4NXM I;  3LPS A;  3H1C A;  3UHM A;  3PRY A;  4JI1 I;  4PU9 A;  1QZR A;  4JI1 E;  4LPF A;  2V2Z A;  1H7S A;  4KQV A;  1H73 A;  1OYP A;  1Y4S A;  4IZJ A;  1Z59 A;  1XMO I;  1XMO E;  2A2C A;  1Z5A A;  2VQE I;  3M7N G;  1ZM4 A;  3F0N A;  2VQE E;  4OO1 A;  5FLX C;  3B78 A;  3L7Z B;  4LF9 I;  4KHP I;  4KHP E;  2UUB I;  4LF9 E;  2UXB I;  2UUB E;  2UXB E;  5IWA I;  1NHJ A;  4DUZ I;  5IWA E;  3WU3 A;  5ELW A;  4DUZ E;  4IFD C;  4LF6 E;  1Z0T A;  2NN6 D;  4Z7Y A;  1ZM9 A;  4FWD A;  3GLL A;  4DV6 I;  4DV6 E;  4DR3 I;  4DR3 E;  4FWH A;  4ZVI A;  3PS3 A;  4MYU A;  4JI5 E;  2R42 A;  3ZZ0 A;  1ZM2 A;  4U3B A;  5JEA A;  1S4E A;  5K36 D;  4YY3 I;  4YY3 E;  2UUA I;  1FWK A;  1OYS A;  1XNQ E;  2CZ9 A;  3J80 Q;  4GKJ I;  4GKJ E;  2WW4 A;  1HK7 A;  2ZBK B;  4X62 I;  4X62 E;  2AJ4 A;  2C39 A;  3P76 A;  5C0X C;  4MU3 A;  2O1V A;  2HFU A;  1MX0 A;  2IES A;  4IFD B;  2PNZ B;  4X65 I;  2IER A;  4X65 E;  2E1R A;  2Z5B A;  4DR4 I;  4AQY E;  2PNM A;  4DR4 E;  4JYA E;  2Z5E A;  3T1Y I;  3T1Y E;  1EI1 A;  3K85 A;  5FWK A;  3GON A;  4MDT A;  1RRE A;  2J65 A;  2JEA B;  4FW4 A;  2BR2 A;  3D4J A;  4UTG A;  4XTJ A;  1FWL A;  3ZZU A;  4DPW A;  5IT9 Q;  1UDO A;  3QT7 A;  2E5L I;  1KIJ A;  3T1H I;  2E5L E;  3T1H E;  4QNK A;  3QT8 A;  2GQ0 A;  5EL9 A;  1K47 A;  1Z0E A;  1PKP A;  1D6T A;  5C0X B;  5K36 A;  1ZM3 A;  4R1F A;  4JI0 I;  4JI0 E;  1NZ0 A;  1IBK I;  1IBK E;  5C0X E;  4K0K I;  1HNZ I;  4K0K E;  3Q6N A;  4DPU A;  1HNZ E;  1E3H A;  1EA6 A;  5FLX Q;  4LCF A;  3V5R A;  4LF4 I;  2NN6 C;  4LF4 E;  2A2D A;  1N34 E;  4GQU A;  5DNX A;  1P42 A;  4Z7C A;  2ZM6 I;  1HNX I;  2ZM6 E;  1HNX E;  4WUB A;  4LFA I;  4LFA E;  3CDJ A;  2X36 A;  1B63 A;  3ZM7 A;  1PIE A;  2C39 B;  2WNR B;  4MU0 A;  2O1T A;  2PO0 B;  1MG7 A;  2Z5C B;  2IOP A;  2Z5B B;  5BR8 I;  5EKW A;  2GS8 A;  5BR8 E;  1Z0W A;  3B4T A;  1Z5C A;  4JV5 I;  4JV5 E;  5DNL A;  3ZKB A;  4BA2 A;  4DR1 I;  2NN6 B;  3H4L A;  4DR1 E;  1ELO A;  1E3P A;  1USU A;  1KKH A;  4B3R I;  4B3R E;  3M7N D;  2HKJ A;  1N36 I;  2JT2 A;  2PO2 A;  1N36 E;  1IBM I;  1IBM E;  2R3V A;  3J81 C;  4LF6 I;  2EFG A;  2BA0 G;  3CDI A;  4X66 I;  4X66 E;  2BA0 D;  3KRN A;  4IFD F;  4PRV A;  5K36 B;  1OYR A;  4AIM A;  4MQY A;  3J7A G;  5LMU I;  5LMU E;  2V8P A;  4BA1 B;  4FW3 A;  4DV0 E;  4JI5 I;  2AE8 A;  5A2Q C;  4DV7 I;  4DV7 E;  1KTV A;  4AID A;  2X7I A;  4LCG A;  4FN5 A;  1XNQ I;  2V2V A;  3Q1Q A;  2J7K A;  4OO1 C;  2WP8 B;  3JAM Q;  4DU7 A;  1MU5 A;  5LL6 R;  2O3Z A;  4N3O A;  5C0X F;  1UDQ A;  2C37 A;  4AM3 A;  1Y60 A;  4AQY I;  3B8H A;  1FKA E;  3U1K A;  1UDS A;  4IFD E;  2O1W A;  4JYA I;  2UU9 I;  1RR9 A;  2UU9 E;  3P3G A;  4FWG A;  4DPY A;  4FW9 A;  4USK A;  2JE6 A;  5JEA C;  1WUU A;  2UXC I;  4ED4 A;  4IZJ B;  2UXC E;  4DR6 I;  4DR6 E;  4DR7 I;  2BV3 A;  3HJC A;  4DR7 E;  1PVG A;  1FJG I;  1Z0V A;  1XHK A;  5GMD A;  4LF7 I;  4LF7 E;  1FJG E;  4OO1 B;  2PO2 B;  3HUL A;  1H7U A;  1XXE A;  4QNJ A;  3K1J A;  4HXZ A;  4OO1 E; 
#chains in the Genus database with same CATH homology
 5DRP A;  4OKG A;  2JT2 A;  4FW6 A;  3P3G A;  4LCH A;  2VES A;  3PS1 A;  4FW5 A;  4LCG A;  4MDT A;  3UHM A;  2J65 A;  4U3D A;  4FW4 A;  3PS2 A;  4ISA A;  2GO4 A;  4LCF A;  3NZK A;  3P76 A;  2IES A;  5DRR A;  4OZE A;  3P3E A;  2GO3 A;  1P42 A;  4J3D A;  2O3Z A;  2IER A;  4MQY A;  5DRQ A;  4IS9 A;  1YHC A;  4FW3 A;  3PS3 A;  1XXE A;  4FW7 A;  5DRO A;  4U3B A;  3U1Y A;  1YH8 A;  3P3C A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1P42A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations