The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
194
|
sequence length |
715
|
structure length |
645
|
Chain Sequence |
NETHYAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVNQIQEDTGAEIYIGAADGPAAEAGSVVKTTFGAFVSLLDGLLHLGVGQKVQVEIAEIDSRGK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
GUANOSINE PENTAPHOSPHATE SYNTHETASE
|
| publication title |
A Duplicated Fold is the Structural Basis for Polynucleotide Phosphorylase Catalytic Activity, Processivity, and Regulation
pubmed doi rcsb |
| source organism |
Streptomyces antibioticus
|
| molecule tags |
Polyribonucleotide transferase
|
| total genus |
194
|
| structure length |
645
|
| sequence length |
715
|
| ec nomenclature |
ec
2.7.7.8: Polyribonucleotide nucleotidyltransferase. |
| pdb deposition date | 2000-06-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00013 | KH_1 | KH domain |
| A | PF00575 | S1 | S1 RNA binding domain |
| A | PF01138 | RNase_PH | 3' exoribonuclease family, domain 1 |
| A | PF03726 | PNPase | Polyribonucleotide nucleotidyltransferase, RNA binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Polyribonucleotide nucleotidyltransferase, RNA-binding domain | ||
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | GHMP Kinase, N-terminal domain | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | GHMP Kinase, N-terminal domain |
