The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
81
|
sequence length |
341
|
structure length |
306
|
Chain Sequence |
LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKEAFDVATGAGAMAGKVSGAGFIMFVVEPTRKEEVVRALNNLNGFVMPFQFIDDGAHGWKIYS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron
rcsb |
| molecule tags |
Transferase
|
| source organism |
Bacteroides thetaiotaomicron
|
| molecule keywords |
D-glycero-D-manno-heptose 1-phosphate kinase
|
| total genus |
81
|
| structure length |
306
|
| sequence length |
341
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-10-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00288 | GHMP_kinases_N | GHMP kinases N terminal domain |
| A | PF08544 | GHMP_kinases_C | GHMP kinases C terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | Ribosomal Protein S5; domain 2 |
#chains in the Genus database with same CATH superfamily 3K85 A; 4N3O A; #chains in the Genus database with same CATH topology 4OO1 D; 4IFD B; 2X36 A; 4JI5 E; 1HNW E; 1ZXM A; 4B3S E; 5DRP A; 5K36 E; 4X64 E; 4GKK I; 1NZ0 A; 2J7K A; 4U3B A; 4LF9 E; 2AJ4 A; 3M6A A; 1I94 E; 3PYD A; 5DNX A; 4OO1 B; 4GQU A; 4JI5 I; 4JI8 E; 3JAM Q; 2X7I A; 3QT5 A; 4IZJ D; 2JE6 A; 4BA2 B; 1QZR A; 3K1J A; 2CGE A; 4X64 I; 2WW4 A; 4LF9 I; 4LF5 E; 1DAR A; 3L7Z B; 1ZM2 A; 4JI8 I; 4IZJ B; 2BM0 A; 3PYG A; 1RHY A; 3CDI A; 2HKJ A; 2NN6 C; 4DR4 E; 4LF8 E; 4DU8 A; 2EFG A; 1OYR A; 2Z5C B; 1UDO A; 4DPT A; 3H1C A; 5JEA A; 1Y6Z A; 2JEB B; 4DR4 I; 1IBM I; 2DEJ A; 5GMD A; 4LF8 I; 1NHI A; 4DPW A; 2UXB E; 4FW9 A; 4DV7 E; 4ZVI A; 3J80 C; 4J3D A; 5JEA D; 4DUZ I; 4HYM A; 1PKP A; 1EI1 A; 5C0X E; 5K36 A; 2HK2 A; 2NN6 D; 3V5R A; 1MX0 A; 4LFA I; 2VQF E; 5LMU E; 3GON A; 2HHH I; 2VES A; 5FLX C; 3PS1 A; 4DU7 A; 2GS8 A; 4LOM A; 2CVE A; 4FWH A; 4IFD E; 2NN6 B; 4MU3 A; 2GO4 A; 3UHM A; 4DV6 E; 1FWL A; 4X66 E; 4FW5 A; 2VQF I; 1HR0 E; 3PS3 A; 2IES A; 5LMN I; 2IER A; 2C39 A; 1J5E E; 5FWK A; 3NZK A; 1XMO E; 3J81 Q; 4JYA I; 4DV6 I; 1HNZ E; 4X66 I; 3ZZ0 A; 1HR0 I; 2WNR B; 2XEX A; 2Z5B B; 2A2D A; 3K17 A; 4LFC E; 4K0K E; 2UUA I; 2HFU A; 4XTJ A; 1UDS A; 3F0N A; 4ISA A; 1HNZ I; 3T1H E; 3B4T A; 2PO2 A; 2PO1 A; 4OZE A; 4HY1 A; 4YY3 E; 1N0U A; 4DR7 I; 1Y5Y A; 1WUU A; 4JI2 I; 1ELO A; 3U1K A; 3J80 Q; 5IT9 C; 4NXN E; 2NN6 F; 2UXC I; 4DV1 E; 3J7A G; 4B3M E; 5C0X A; 4DV0 E; 1H7S A; 4FW3 A; 4NXM E; 3WU6 A; 2BA1 D; 4NXN I; 4JI0 E; 4FWD A; 5FLX Q; 1XMQ E; 3P3G A; 2HK3 A; 4DV0 I; 4IFD A; 3T1Y E; 4MU4 A; 1K47 A; 3PYF A; 1N32 E; 5ELW A; 4DUY E; 4Z7C A; 4HXZ A; 1N34 E; 4OKG A; 4DR3 E; 3PS2 A; 3T1Y I; 1N32 I; 2PNM A; 4DV4 I; 5DRO A; 4LCF A; 4DUY I; 4BA2 A; 2NN6 E; 4YHH I; 1P42 A; 5DNL A; 4DR3 I; 3L7Z A; 5LL6 R; 2PO0 B; 4IZJ A; 3U1Y A; 2UXD I; 3LTO A; 3P3E A; 1E3H A; 1EA6 A; 5L3J A; 2VQE E; 5A2Q C; 2Z5C A; 4KHP I; 4USM A; 1PVG A; 3M85 D; 1Z0C A; 3WU4 A; 2BA1 G; 1NHJ A; 2JEB A; 2IOQ A; 5IT9 Q; 2OI2 A; 2VQE I; 1KIJ A; 4JI3 E; 1S4E A; 1IBL I; 2O1T A; 4DPY A; 3LPS A; 4DV2 E; 2V2Z A; 1IBM E; 2F4V I; 4N3O A; 4HAC A; 3CWV A; 4JI3 I; 2JT2 A; 4JI7 I; 2C38 B; 2C37 B; 4DV2 I; 4DUZ E; 2NN6 A; 1XNQ I; 4JG4 A; 2LJP A; 1XNR E; 1Z5C A; 2PNL A; 4LFA E; 3K85 A; 4FW4 A; 2HHH E; 3M85 G; 4BA1 B; 2BM1 A; 4P52 A; 2HKE A; 4HAC B; 2WNR A; 3ZM7 A; 1XNR I; 3KRN A; 2Z5B A; 4MU0 A; 5A2Q Q; 2V8P A; 1Z0T A; 1H7U A; 5LMN E; 4DR6 I; 4DR5 I; 4LFB E; 4QNK A; 4JYA E; 2O1W A; 5DRQ A; 4IZK A; 4AM3 A; 4JI1 I; 1H72 C; 4UT4 A; 3OTO E; 4FW7 A; 4LFB I; 2UUA E; 1Y60 A; 4U3D A; 1Z0G A; 1IBK I; 2J65 A; 3OTO I; 4DR7 E; 4B3T I; 4JI2 E; 4ED4 A; 4IS9 A; 4DV3 E; 2UXC E; 1XHK A; 3HKM A; 1N0V C; 2DEI A; 4IZK B; 2NPF A; 4DR2 E; 1YHC A; 1RR9 A; 3B8H A; 4QNJ A; 4DV3 I; 1FJG E; 2AE8 A; 1KVK A; 3CDJ A; 2VF3 A; 4DR2 I; 4GKJ E; 1KKH A; 1Z5B A; 4WUB A; 1FJG I; 2PO0 A; 5C0X C; 3GLL A; 3B78 A; 2V2V A; 4DV4 E; 4GKJ I; 2BR2 B; 2UU9 I; 4YHH E; 1Z0B A; 2R3V A; 4FWG A; 4IFD C; 3WU3 A; 2CG9 A; 1FWK A; 4FW6 A; 4JI6 I; 5IWA I; 1H73 A; 4JV5 E; 2UXD E; 5EL9 A; 3QT8 A; 4OO1 C; 1UEK A; 2V34 A; 1B63 A; 2F1D A; 4KHP E; 3HUL A; 4JV5 I; 3Q6N A; 2ZIT A; 3DD6 A; 1USU A; 4X62 I; 2ZM6 E; 3P3C A; 1NHH A; 2O1U A; 2E5L E; 4X65 E; 1KTV A; 1FKA E; 1D6T A; 2C38 A; 1MG7 A; 3GME A; 2PNZ B; 2ZM6 I; 1IBL E; 4EMD A; 3D4J A; 2C37 A; 1HNX I; 2E5L I; 1N36 I; 2HFS A; 2F4V E; 4X65 I; 4B3R E; 4LF6 I; 3H4L A; 3WU5 A; 4FN5 A; 1OYS A; 4DR1 I; 4JI7 E; 4BA1 A; 1XXE A; 4PRX A; 2WP8 B; 1XNQ E; 4B3R I; 5BR8 I; 1S16 A; 1Z0E A; 3QT6 A; 1HNW I; 4AIM A; 4B3S I; 1FI4 A; 5EKW A; 4M1K A; 4DXL A; 5JEA C; 4AQY E; 1I94 I; 4JI4 E; 3J81 C; 5DRR A; 4LCH A; 2BA0 D; 5C0X F; 4WUC A; 3V2U C; 1OJ4 A; 4DV5 E; 4DR6 E; 4LF7 E; 4DR5 E; 4MYT A; 1Z5A A; 4LF5 I; 4AQY I; 4JI4 I; 4NBQ A; 1VIS A; 3M7N D; 4I3H A; 1B62 A; 4IFD F; 1N33 E; 4DV5 I; 2JEA A; 4JI1 E; 2JE6 B; 4LF7 I; 1Z0V A; 5K36 C; 1OYP A; 3GCM A; 2O3Z A; 3Q6M A; 4OO1 F; 4PRV A; 1N33 I; 1Y4S A; 3J7A M; 1ZXN A; 1IBK E; 1UDQ A; 4MU1 A; 4P7A A; 4UTG A; 2UXB I; 2UUC E; 4B3T E; 2IOP A; 1Y4U A; 3QT7 A; 4DV7 I; 4RPF A; 5GME A; 4DPX A; 5JEA B; 3B82 A; 2JEA B; 1R6M A; 4MYU A; 2UUC I; 2BA0 G; 2CZ9 A; 4LCG A; 1UDN A; 5LMU I; 3P06 A; 3ZKD A; 5K36 D; 2BR2 A; 3M7N G; 1BKN A; 4OO1 E; 1VI7 A; 1RRE A; 5K36 B; 4USK A; 4MDT A; 2A2C A; 3HJC A; 1H74 A; 1PIE A; 1XMO I; 1J5E I; 4KQV A; 4LPF A; 2UU9 E; 1Z0W A; 2GO3 A; 2ZBK B; 1Z59 A; 3LNU A; 1U2R A; 4JI6 E; 5IWA E; 5JEA F; 4PU9 A; 4LFC I; 2C39 B; 4K0K I; 3JAM C; 3T1H I; 4LF4 E; 1HK7 A; 2Z5E A; 3ZZU A; 1MU5 A; 2E1R A; 2PNZ A; 4YY3 I; 4X62 E; 4MQY A; 3PRY A; 1A6F A; 4LF4 I; 1FNM A; 4DV1 I; 4R1F A; 4B3M I; 4AID A; 5K36 F; 3ZZT A; 2PO2 B; 3PYE A; 4OX9 E; 4WUD A; 2PO1 B; 1E3P A; 1R6L A; 2GQ0 A; 4NXM I; 5C0X D; 2Q2E B; 4URL A; 1HNX E; 1USV A; 3Q1Q A; 4JI0 I; 2WP8 A; 1N36 E; 1XMQ I; 3ZKB A; 5JEA E; 1YH8 A; 2UUB E; 4OO1 A; 4OX9 I; 1ZM4 A; 3P76 A; 5C0X B; 4LF6 E; 2O1V A; 4IFD D; 1ZM9 A; 4DPU A; 4DR1 E; 2R42 A; 4Z7Y A; 1N34 I; 2UUB I; 2BV3 A; 4GKK E; 2V2Q A; 1ZM3 A; 5BR8 E; #chains in the Genus database with same CATH homology 2X36 A; 4JI5 E; 1HNW E; 1ZXM A; 4B3S E; 4X64 E; 4GKK I; 1NZ0 A; 2J7K A; 4LF9 E; 2AJ4 A; 3M6A A; 1I94 E; 3PYD A; 4JI5 I; 4JI8 E; 3JAM Q; 2X7I A; 3QT5 A; 4IZJ D; 1QZR A; 3K1J A; 2CGE A; 4X64 I; 2WW4 A; 4LF9 I; 4LF5 E; 1DAR A; 1ZM2 A; 4JI8 I; 4IZJ B; 2BM0 A; 3PYG A; 2HKJ A; 4DR4 E; 4LF8 E; 4DU8 A; 2EFG A; 2Z5C B; 4DPT A; 1Y6Z A; 4DR4 I; 1IBM I; 2DEJ A; 5GMD A; 4LF8 I; 1NHI A; 4DPW A; 2UXB E; 4FW9 A; 4DV7 E; 4ZVI A; 3J80 C; 4DUZ I; 4HYM A; 1PKP A; 1EI1 A; 2HK2 A; 3V5R A; 1MX0 A; 4LFA I; 2VQF E; 5LMU E; 3GON A; 2HHH I; 5FLX C; 4DU7 A; 2GS8 A; 4FWH A; 4DV6 E; 1FWL A; 4X66 E; 2VQF I; 1HR0 E; 5LMN I; 1J5E E; 5FWK A; 1XMO E; 3J81 Q; 4JYA I; 4DV6 I; 1HNZ E; 4X66 I; 3ZZ0 A; 1HR0 I; 2XEX A; 2Z5B B; 2A2D A; 3K17 A; 4LFC E; 4K0K E; 2UUA I; 2HFU A; 3F0N A; 4XTJ A; 1HNZ I; 3T1H E; 4HY1 A; 4YY3 E; 1N0U A; 4DR7 I; 1WUU A; 4JI2 I; 1ELO A; 3J80 Q; 5IT9 C; 4NXN E; 2UXC I; 4DV1 E; 3J7A G; 4B3M E; 4DV0 E; 1H7S A; 4NXM E; 3WU6 A; 4NXN I; 4JI0 E; 4FWD A; 5FLX Q; 1XMQ E; 2HK3 A; 4DV0 I; 3T1Y E; 1K47 A; 3PYF A; 1N32 E; 4DUY E; 4Z7C A; 4HXZ A; 1N34 E; 4DR3 E; 3T1Y I; 1N32 I; 2PNM A; 4DV4 I; 4DUY I; 4YHH I; 4DR3 I; 5LL6 R; 4IZJ A; 2UXD I; 3LTO A; 1EA6 A; 5L3J A; 2VQE E; 5A2Q C; 2Z5C A; 4KHP I; 4USM A; 1PVG A; 1Z0C A; 3WU4 A; 1NHJ A; 2IOQ A; 5IT9 Q; 2OI2 A; 2VQE I; 1KIJ A; 4JI3 E; 1S4E A; 1IBL I; 2O1T A; 4DPY A; 3LPS A; 4DV2 E; 2V2Z A; 1IBM E; 2F4V I; 4N3O A; 4HAC A; 3CWV A; 4JI3 I; 4JI7 I; 4DV2 I; 4DUZ E; 1XNQ I; 4JG4 A; 2LJP A; 1XNR E; 1Z5C A; 2PNL A; 4LFA E; 3K85 A; 2HHH E; 2BM1 A; 4P52 A; 2HKE A; 4HAC B; 3ZM7 A; 1XNR I; 2Z5B A; 5A2Q Q; 2V8P A; 1Z0T A; 1H7U A; 5LMN E; 4DR6 I; 4DR5 I; 4LFB E; 4JYA E; 2O1W A; 4IZK A; 4JI1 I; 1H72 C; 4UT4 A; 3OTO E; 4LFB I; 2UUA E; 1Z0G A; 1IBK I; 3OTO I; 4DR7 E; 4B3T I; 4JI2 E; 4ED4 A; 4DV3 E; 2UXC E; 1XHK A; 1N0V C; 2DEI A; 4IZK B; 2NPF A; 4DR2 E; 1RR9 A; 3B8H A; 4DV3 I; 1FJG E; 1KVK A; 2VF3 A; 4DR2 I; 4GKJ E; 1KKH A; 1Z5B A; 4WUB A; 1FJG I; 3B78 A; 2V2V A; 4DV4 E; 4GKJ I; 2UU9 I; 4YHH E; 1Z0B A; 2R3V A; 4FWG A; 3WU3 A; 2CG9 A; 1FWK A; 4JI6 I; 5IWA I; 1H73 A; 4JV5 E; 2UXD E; 3QT8 A; 1UEK A; 2V34 A; 1B63 A; 4KHP E; 3HUL A; 4JV5 I; 3Q6N A; 2ZIT A; 1USU A; 4X62 I; 2ZM6 E; 1NHH A; 2O1U A; 2E5L E; 4X65 E; 1KTV A; 1FKA E; 1D6T A; 1MG7 A; 2ZM6 I; 1IBL E; 4EMD A; 3D4J A; 1HNX I; 2E5L I; 1N36 I; 2HFS A; 2F4V E; 4X65 I; 4B3R E; 4LF6 I; 3H4L A; 3WU5 A; 4FN5 A; 4DR1 I; 4JI7 E; 4PRX A; 1XNQ E; 4B3R I; 5BR8 I; 1S16 A; 1Z0E A; 3QT6 A; 1HNW I; 4B3S I; 1FI4 A; 4M1K A; 4DXL A; 4AQY E; 1I94 I; 4JI4 E; 3J81 C; 4WUC A; 3V2U C; 1OJ4 A; 4DV5 E; 4DR6 E; 4LF7 E; 4DR5 E; 4MYT A; 1Z5A A; 4LF5 I; 4AQY I; 4JI4 I; 1VIS A; 4I3H A; 1B62 A; 1N33 E; 4DV5 I; 4JI1 E; 4LF7 I; 1Z0V A; 3Q6M A; 4PRV A; 1N33 I; 1Y4S A; 3J7A M; 1ZXN A; 1IBK E; 4P7A A; 4UTG A; 2UXB I; 2UUC E; 4B3T E; 2IOP A; 1Y4U A; 3QT7 A; 4DV7 I; 4RPF A; 5GME A; 4DPX A; 3B82 A; 4MYU A; 2UUC I; 2CZ9 A; 5LMU I; 3P06 A; 3ZKD A; 1BKN A; 1RRE A; 4USK A; 2A2C A; 3HJC A; 1H74 A; 1PIE A; 1XMO I; 1J5E I; 4KQV A; 2UU9 E; 1Z0W A; 2ZBK B; 1Z59 A; 3LNU A; 1U2R A; 4JI6 E; 5IWA E; 4PU9 A; 4LFC I; 4K0K I; 3JAM C; 3T1H I; 4LF4 E; 1HK7 A; 2Z5E A; 3ZZU A; 1MU5 A; 2E1R A; 4YY3 I; 4X62 E; 3PRY A; 1A6F A; 4LF4 I; 1FNM A; 4DV1 I; 4R1F A; 4B3M I; 3ZZT A; 4OX9 E; 3PYE A; 4WUD A; 4NXM I; 2GQ0 A; 2Q2E B; 4URL A; 1HNX E; 1USV A; 3Q1Q A; 4JI0 I; 1N36 E; 1XMQ I; 3ZKB A; 2UUB E; 4OX9 I; 1ZM4 A; 4LF6 E; 2O1V A; 1ZM9 A; 4DPU A; 4DR1 E; 2R42 A; 4Z7Y A; 1N34 I; 2UUB I; 2BV3 A; 4GKK E; 2V2Q A; 1ZM3 A; 5BR8 E;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
