5DRQA

Crystal structure of the pseudomonas aeruginosa lpxc/lpc-040 complex
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
296
structure length
296
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
molecule tags Hydrolase/hydrolase inhibitor
total genus 98
structure length 296
sequence length 296
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drqA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drqA02
3NZKA 3P3GA 4MQYA 3P3EA 4OKGA 4U3DA 1YH8A 3UHMA 3P3CA 5DRPA 4LCFA 4FW3A 3PS2A 4FW7A 5DROA 4LCHA 2VESA 4FW6A 2IESA 4FW4A 2GO3A 4MDTA 1YHCA 2O3ZA 4J3DA 3PS3A 4FW5A 3PS1A 4OZEA 3U1YA 4IS9A 5DRRA 2IERA 2J65A 1XXEA 2GO4A 4ISAA 5DRQA 1P42A 4LCGA 4U3BA 3P76A 2JT2A
chains in the Genus database with same CATH superfamily
5C0XC 1NHHA 2X7IA 5IT9Q 4GKJI 2HKEA 5C0XB 1ZXNA 2C38B 2UXDI 1U2RA 2DEJA 1H73A 4OO1F 1HNWE 1S4EA 2NN6B 1B62A 2VESA 3B4TA 5JEAE 2BA1G 1N36I 4DPTA 3ZZTA 4X65E 1N33I 1FI4A 4JI1I 4FWHA 2ZITA 4DR4I 2UXCI 3JAMC 1MG7A 2HFSA 4WUBA 2V2QA 1B63A 1I94E 1UDOA 2VQFI 2R42A 2BA0D 5IWAI 5LMUE 3PYFA 2PO2A 1HK7A 1H7SA 1EI1A 1DARA 5A2QC 4DV7E 2O3ZA 1HR0I 2F4VE 4DV2I 4DR2I 3V2UC 1HNZI 1QZRA 2BR2B 4IZKB 1NZ0A 1ZM9A 4OO1E 4LF7I 4IFDF 1Z59A 1ZM4A 4FWDA 3J81C 4JI8E 3PRYA 2PNZB 1IBLE 1H74A 1PIEA 4FWGA 4JI4I 1YH8A 4DPUA 4YHHI 1XNQE 3GMEA 2PNLA 1HNXE 1MU5A 3PYEA 5BR8I 2X36A 3PYDA 2JEBA 1D6TA 4LFCE 4USMA 4DV3I 4IZJA 3U1YA 3OTOI 2UUCE 2J65A 3JAMQ 4DR3E 3M6AA 4P7AA 3DD6A 4PU9A 5ELWA 1VI7A 2WNRB 4DXLA 4JI5I 1UDQA 3B78A 4ED4A 1UEKA 1J5EE 1N34I 4JI7E 5JEAA 4KQVA 1XMOE 4AM3A 2E5LI 4KHPI 2DEIA 1IBKE 1WUUA 5A2QQ 4NXNI 4NXME 5K36C 2IESA 4IFDE 2CVEA 5K36B 4OO1C 4DV4E 1YHCA 4Z7CA 4YY3I 2CGEA 4FW5A 1IBMI 1XNRI 3K1JA 3J81Q 5EL9A 4JYAE 1EA6A 2LJPA 3HULA 3LNUA 4DV0I 2J7KA 5JEAF 3WU4A 2BM1A 2ZM6E 4UTGA 2O1UA 4FW3A 1FNMA 4JI0E 4FW7A 2Q2EB 4OO1A 5LL6R 4AQYI 4MYTA 3D4JA 1FWKA 1KKHA 2HK2A 5LMNE 4X65I 1NHJA 5FLXC 4N3OA 1Y5YA 2VQEE 3LTOA 4HACB 3HJCA 1Z5BA 4LF4I 2UXBI 1XXEA 1Y6ZA 3CWVA 4DPWA 1UDNA 4U3BA 3J7AM 4PRXA 1Z0EA 2V8PA 4HYMA 2JE6A 2WW4A 4QNKA 5EKWA 1Z0VA 4LFAI 2AE8A 3UHMA 2HKJA 4DV1E 1N0VC 4JI6E 1R6MA 4AIDA 4DV7I 2UUAE 1KVKA 3GONA 5C0XD 3PS3A 4DV5I 4PRVA 4JI2E 2NN6D 3V5RA 4QNJA 2PO2B 4JV5I 2Z5BA 2CG9A 4ISAA 4LOMA 4K0KE 4I3HA 4IFDA 3WU3A 3H1CA 4M1KA 2V34A 2A2DA 4DUZI 3J80Q 1XMQE 5FLXQ 4GKKE 3HKMA 4B3MI 2HHHI 1UDSA 1H72C 4USKA 2V2ZA 4JI3E 3LPSA 2UUBE 3CDIA 4RPFA 4B3RE 2GQ0A 3GLLA 2F1DA 3T1HE 2IERA 4DR1I 2JEBB 2BM0A 1KIJA 1ZM2A 1J5EI 3J7AG 4IZJB 4BA2B 4X64E 4X66E 4DR7I 2PO0A 4NXMI 4GKJE 1USVA 3K85A 5JEAC 3PYGA 1OYRA 4B3SI 4X62I 4LFBI 1N0UA 3F0NA 4DR5E 1NHIA 3QT8A 2CZ9A 5C0XF 4DUYE 1N33E 4Z7YA 4JI1E 2NN6F 3H4LA 1Z0TA 4DR4E 4LF5I 2UXCE 2Z5EA 4LF8E 3ZM7A 4B3TI 1Z5CA 4DPYA 1BKNA 1R6LA 3P3CA 4DU8A 2PO1A 1FWLA 3PS2A 1N32E 4LCHA 2GO3A 5IWAE 4MDTA 1KTVA 4MU1A 3WU6A 4LF6I 1HR0E 2C39A 1FKAE 2IOPA 1ELOA 4DV2E 4WUCA 4DR6E 4DR2E 4OO1B 4JG4A 1K47A 1OYSA 4OX9E 5K36D 1Y60A 3QT5A 1Y4SA 4DV6I 4LF7E 3L7ZB 4MU0A 4MYUA 4R1FA 1VISA 4OKGA 1RR9A 1HNWI 2OI2A 4JI4E 4BA1A 4YHHE 5C0XE 2UUAI 2JE6B 2C37A 3B82A 4FN5A 5BR8E 2NN6E 2UU9E 4JI2I 3J80C 2V2VA 1Z0BA 1FJGE 4OZEA 2ZBKB 2HK3A 2PNMA 1PVGA 5DNXA 4JI5E 2JT2A 1RREA 1N34E 2VF3A 1I94I 4IFDC 2E5LE 4KHPE 2BV3A 5DRPA 1Z5AA 5LMUI 2UUBI 3ZZ0A 2F4VI 4YY3E 2O1TA 1XNRE 1IBME 1E3PA 2IOQA 3T1YE 2JEAA 3ZKBA 4DV0E 4X64I 4X66I 4JI8I 5FWKA 1IBLI 5K36F 1XHKA 2NN6C 3P06A 4U3DA 2O1WA 2WP8A 1XNQI 1HNXI 4HACA 1PKPA 4UT4A 4AQYE 2PO0B 4DPXA 4DR5I 4LFCI 4MU4A 2Z5CA 1ZM3A 3Q1QA 2E1RA 3PS1A 2UUCI 4DR3I 4DUYI 4URLA 4LF9E 2UXBE 4LF4E 3Q6NA 5C0XA 2EFGA 2C38A 4XTJA 4JI7I 4LF8I 3ZKDA 2NN6A 2GO4A 1XMOI 3NZKA 4LPFA 1IBKI 1A6FA 4NBQA 3B8HA 1N32I 4LFAE 5L3JA 4IZJD 2UXDE 5JEAB 1OJ4A 5GMEA 4DV4I 1RHYA 4DR6I 2PO1B 2AJ4A 4DV5E 4JYAI 3M85D 1E3HA 1MX0A 5DRRA 5JEAD 4OX9I 2XEXA 5K36E 1N36E 4JV5E 1P42A 2C39B 3M7NG 3KRNA 3P76A 2ZM6I 1S16A 3P3EA 4DUZE 3GCMA 4JI0I 4WUDA 1Z0WA 1ZXMA 3ZZUA 2VQFE 2BR2A 5LMNI 2GS8A 2UU9I 4B3ME 2HHHE 2HFUA 4IZKA 1FJGI 4J3DA 4P52A 4BA2A 4BA1B 4IS9A 2VQEI 2PNZA 2C37B 1HNZE 4DR1E 4HY1A 2R3VA 4DU7A 4FW6A 4OO1D 1USUA 4MU3A 4DR7E 1H7UA 4DV1I 4JI6I 3Q6MA 2BA1D 4B3SE 4X62E 5IT9C 3QT7A 4LFBE 2O1VA 2BA0G 2WNRA 3T1YI 4DV3E 3OTOE 4K0KI 4ZVIA 4GQUA 4FW9A 3M85G 3P3GA 4LF5E 2JEAB 4AIMA 4MQYA 5K36A 4B3TE 2Z5BB 1XMQI 4LCFA 1Z0GA 3CDJA 4GKKI 4IFDB 4NXNE 5DROA 4FW4A 4JI3I 4B3RI 3WU5A 1Y4UA 3K17A 2WP8B 3L7ZA 4LF6E 5DNLA 3T1HI 4IFDD 4EMDA 3M7ND 4LF9I 5GMDA 1OYPA 5DRQA 2Z5CB 4LCGA 3U1KA 2NPFA 4DV6E 3QT6A 4HXZA 2A2CA 1Z0CA
chains in the Genus database with same CATH topology
3NZKA 3P3GA 4MQYA 3P3EA 4OKGA 4U3DA 1YH8A 3UHMA 3P3CA 5DRPA 4LCFA 4FW3A 3PS2A 4FW7A 5DROA 4LCHA 2VESA 4FW6A 2IESA 4FW4A 2GO3A 4MDTA 1YHCA 2O3ZA 4J3DA 3PS3A 4FW5A 3PS1A 4OZEA 3U1YA 4IS9A 5DRRA 2IERA 2J65A 1XXEA 2GO4A 4ISAA 5DRQA 1P42A 4LCGA 4U3BA 3P76A 2JT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NZK A;  3P3G A;  4MQY A;  3P3E A;  4OKG A;  4U3D A;  1YH8 A;  3UHM A;  3P3C A;  5DRP A;  4LCF A;  4FW3 A;  3PS2 A;  4FW7 A;  5DRO A;  4LCH A;  2VES A;  4FW6 A;  2IES A;  4FW4 A;  2GO3 A;  4MDT A;  1YHC A;  2O3Z A;  4J3D A;  3PS3 A;  4FW5 A;  3PS1 A;  4OZE A;  3U1Y A;  4IS9 A;  5DRR A;  2IER A;  2J65 A;  1XXE A;  2GO4 A;  4ISA A;  5DRQ A;  1P42 A;  4LCG A;  4U3B A;  3P76 A;  2JT2 A; 
#chains in the Genus database with same CATH topology
 5C0X C;  1NHH A;  2X7I A;  5IT9 Q;  4GKJ I;  2HKE A;  5C0X B;  1ZXN A;  2C38 B;  2UXD I;  1U2R A;  2DEJ A;  1H73 A;  4OO1 F;  1HNW E;  1S4E A;  2NN6 B;  1B62 A;  2VES A;  3B4T A;  5JEA E;  2BA1 G;  1N36 I;  4DPT A;  3ZZT A;  4X65 E;  1N33 I;  1FI4 A;  4JI1 I;  4FWH A;  2ZIT A;  4DR4 I;  2UXC I;  3JAM C;  1MG7 A;  2HFS A;  4WUB A;  2V2Q A;  1B63 A;  1I94 E;  1UDO A;  2VQF I;  2R42 A;  2BA0 D;  5IWA I;  5LMU E;  3PYF A;  2PO2 A;  1HK7 A;  1H7S A;  1EI1 A;  1DAR A;  5A2Q C;  4DV7 E;  2O3Z A;  1HR0 I;  2F4V E;  4DV2 I;  4DR2 I;  3V2U C;  1HNZ I;  1QZR A;  2BR2 B;  4IZK B;  1NZ0 A;  1ZM9 A;  4OO1 E;  4LF7 I;  4IFD F;  1Z59 A;  1ZM4 A;  4FWD A;  3J81 C;  4JI8 E;  3PRY A;  2PNZ B;  1IBL E;  1H74 A;  1PIE A;  4FWG A;  4JI4 I;  1YH8 A;  4DPU A;  4YHH I;  1XNQ E;  3GME A;  2PNL A;  1HNX E;  1MU5 A;  3PYE A;  5BR8 I;  2X36 A;  3PYD A;  2JEB A;  1D6T A;  4LFC E;  4USM A;  4DV3 I;  4IZJ A;  3U1Y A;  3OTO I;  2UUC E;  2J65 A;  3JAM Q;  4DR3 E;  3M6A A;  4P7A A;  3DD6 A;  4PU9 A;  5ELW A;  1VI7 A;  2WNR B;  4DXL A;  4JI5 I;  1UDQ A;  3B78 A;  4ED4 A;  1UEK A;  1J5E E;  1N34 I;  4JI7 E;  5JEA A;  4KQV A;  1XMO E;  4AM3 A;  2E5L I;  4KHP I;  2DEI A;  1IBK E;  1WUU A;  5A2Q Q;  4NXN I;  4NXM E;  5K36 C;  2IES A;  4IFD E;  2CVE A;  5K36 B;  4OO1 C;  4DV4 E;  1YHC A;  4Z7C A;  4YY3 I;  2CGE A;  4FW5 A;  1IBM I;  1XNR I;  3K1J A;  3J81 Q;  5EL9 A;  4JYA E;  1EA6 A;  2LJP A;  3HUL A;  3LNU A;  4DV0 I;  2J7K A;  5JEA F;  3WU4 A;  2BM1 A;  2ZM6 E;  4UTG A;  2O1U A;  4FW3 A;  1FNM A;  4JI0 E;  4FW7 A;  2Q2E B;  4OO1 A;  5LL6 R;  4AQY I;  4MYT A;  3D4J A;  1FWK A;  1KKH A;  2HK2 A;  5LMN E;  4X65 I;  1NHJ A;  5FLX C;  4N3O A;  1Y5Y A;  2VQE E;  3LTO A;  4HAC B;  3HJC A;  1Z5B A;  4LF4 I;  2UXB I;  1XXE A;  1Y6Z A;  3CWV A;  4DPW A;  1UDN A;  4U3B A;  3J7A M;  4PRX A;  1Z0E A;  2V8P A;  4HYM A;  2JE6 A;  2WW4 A;  4QNK A;  5EKW A;  1Z0V A;  4LFA I;  2AE8 A;  3UHM A;  2HKJ A;  4DV1 E;  1N0V C;  4JI6 E;  1R6M A;  4AID A;  4DV7 I;  2UUA E;  1KVK A;  3GON A;  5C0X D;  3PS3 A;  4DV5 I;  4PRV A;  4JI2 E;  2NN6 D;  3V5R A;  4QNJ A;  2PO2 B;  4JV5 I;  2Z5B A;  2CG9 A;  4ISA A;  4LOM A;  4K0K E;  4I3H A;  4IFD A;  3WU3 A;  3H1C A;  4M1K A;  2V34 A;  2A2D A;  4DUZ I;  3J80 Q;  1XMQ E;  5FLX Q;  4GKK E;  3HKM A;  4B3M I;  2HHH I;  1UDS A;  1H72 C;  4USK A;  2V2Z A;  4JI3 E;  3LPS A;  2UUB E;  3CDI A;  4RPF A;  4B3R E;  2GQ0 A;  3GLL A;  2F1D A;  3T1H E;  2IER A;  4DR1 I;  2JEB B;  2BM0 A;  1KIJ A;  1ZM2 A;  1J5E I;  3J7A G;  4IZJ B;  4BA2 B;  4X64 E;  4X66 E;  4DR7 I;  2PO0 A;  4NXM I;  4GKJ E;  1USV A;  3K85 A;  5JEA C;  3PYG A;  1OYR A;  4B3S I;  4X62 I;  4LFB I;  1N0U A;  3F0N A;  4DR5 E;  1NHI A;  3QT8 A;  2CZ9 A;  5C0X F;  4DUY E;  1N33 E;  4Z7Y A;  4JI1 E;  2NN6 F;  3H4L A;  1Z0T A;  4DR4 E;  4LF5 I;  2UXC E;  2Z5E A;  4LF8 E;  3ZM7 A;  4B3T I;  1Z5C A;  4DPY A;  1BKN A;  1R6L A;  3P3C A;  4DU8 A;  2PO1 A;  1FWL A;  3PS2 A;  1N32 E;  4LCH A;  2GO3 A;  5IWA E;  4MDT A;  1KTV A;  4MU1 A;  3WU6 A;  4LF6 I;  1HR0 E;  2C39 A;  1FKA E;  2IOP A;  1ELO A;  4DV2 E;  4WUC A;  4DR6 E;  4DR2 E;  4OO1 B;  4JG4 A;  1K47 A;  1OYS A;  4OX9 E;  5K36 D;  1Y60 A;  3QT5 A;  1Y4S A;  4DV6 I;  4LF7 E;  3L7Z B;  4MU0 A;  4MYU A;  4R1F A;  1VIS A;  4OKG A;  1RR9 A;  1HNW I;  2OI2 A;  4JI4 E;  4BA1 A;  4YHH E;  5C0X E;  2UUA I;  2JE6 B;  2C37 A;  3B82 A;  4FN5 A;  5BR8 E;  2NN6 E;  2UU9 E;  4JI2 I;  3J80 C;  2V2V A;  1Z0B A;  1FJG E;  4OZE A;  2ZBK B;  2HK3 A;  2PNM A;  1PVG A;  5DNX A;  4JI5 E;  2JT2 A;  1RRE A;  1N34 E;  2VF3 A;  1I94 I;  4IFD C;  2E5L E;  4KHP E;  2BV3 A;  5DRP A;  1Z5A A;  5LMU I;  2UUB I;  3ZZ0 A;  2F4V I;  4YY3 E;  2O1T A;  1XNR E;  1IBM E;  1E3P A;  2IOQ A;  3T1Y E;  2JEA A;  3ZKB A;  4DV0 E;  4X64 I;  4X66 I;  4JI8 I;  5FWK A;  1IBL I;  5K36 F;  1XHK A;  2NN6 C;  3P06 A;  4U3D A;  2O1W A;  2WP8 A;  1XNQ I;  1HNX I;  4HAC A;  1PKP A;  4UT4 A;  4AQY E;  2PO0 B;  4DPX A;  4DR5 I;  4LFC I;  4MU4 A;  2Z5C A;  1ZM3 A;  3Q1Q A;  2E1R A;  3PS1 A;  2UUC I;  4DR3 I;  4DUY I;  4URL A;  4LF9 E;  2UXB E;  4LF4 E;  3Q6N A;  5C0X A;  2EFG A;  2C38 A;  4XTJ A;  4JI7 I;  4LF8 I;  3ZKD A;  2NN6 A;  2GO4 A;  1XMO I;  3NZK A;  4LPF A;  1IBK I;  1A6F A;  4NBQ A;  3B8H A;  1N32 I;  4LFA E;  5L3J A;  4IZJ D;  2UXD E;  5JEA B;  1OJ4 A;  5GME A;  4DV4 I;  1RHY A;  4DR6 I;  2PO1 B;  2AJ4 A;  4DV5 E;  4JYA I;  3M85 D;  1E3H A;  1MX0 A;  5DRR A;  5JEA D;  4OX9 I;  2XEX A;  5K36 E;  1N36 E;  4JV5 E;  1P42 A;  2C39 B;  3M7N G;  3KRN A;  3P76 A;  2ZM6 I;  1S16 A;  3P3E A;  4DUZ E;  3GCM A;  4JI0 I;  4WUD A;  1Z0W A;  1ZXM A;  3ZZU A;  2VQF E;  2BR2 A;  5LMN I;  2GS8 A;  2UU9 I;  4B3M E;  2HHH E;  2HFU A;  4IZK A;  1FJG I;  4J3D A;  4P52 A;  4BA2 A;  4BA1 B;  4IS9 A;  2VQE I;  2PNZ A;  2C37 B;  1HNZ E;  4DR1 E;  4HY1 A;  2R3V A;  4DU7 A;  4FW6 A;  4OO1 D;  1USU A;  4MU3 A;  4DR7 E;  1H7U A;  4DV1 I;  4JI6 I;  3Q6M A;  2BA1 D;  4B3S E;  4X62 E;  5IT9 C;  3QT7 A;  4LFB E;  2O1V A;  2BA0 G;  2WNR A;  3T1Y I;  4DV3 E;  3OTO E;  4K0K I;  4ZVI A;  4GQU A;  4FW9 A;  3M85 G;  3P3G A;  4LF5 E;  2JEA B;  4AIM A;  4MQY A;  5K36 A;  4B3T E;  2Z5B B;  1XMQ I;  4LCF A;  1Z0G A;  3CDJ A;  4GKK I;  4IFD B;  4NXN E;  5DRO A;  4FW4 A;  4JI3 I;  4B3R I;  3WU5 A;  1Y4U A;  3K17 A;  2WP8 B;  3L7Z A;  4LF6 E;  5DNL A;  3T1H I;  4IFD D;  4EMD A;  3M7N D;  4LF9 I;  5GMD A;  1OYP A;  5DRQ A;  2Z5C B;  4LCG A;  3U1K A;  2NPF A;  4DV6 E;  3QT6 A;  4HXZ A;  2A2C A;  1Z0C A; 
#chains in the Genus database with same CATH homology
 3NZK A;  3P3G A;  4MQY A;  3P3E A;  4OKG A;  4U3D A;  1YH8 A;  3UHM A;  3P3C A;  5DRP A;  4LCF A;  4FW3 A;  3PS2 A;  4FW7 A;  5DRO A;  4LCH A;  2VES A;  4FW6 A;  2IES A;  4FW4 A;  2GO3 A;  4MDT A;  1YHC A;  2O3Z A;  4J3D A;  3PS3 A;  4FW5 A;  3PS1 A;  4OZE A;  3U1Y A;  4IS9 A;  5DRR A;  2IER A;  2J65 A;  1XXE A;  2GO4 A;  4ISA A;  5DRQ A;  1P42 A;  4LCG A;  4U3B A;  3P76 A;  2JT2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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