5DRQA

Crystal structure of the pseudomonas aeruginosa lpxc/lpc-040 complex
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
296
structure length
296
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
molecule tags Hydrolase/hydrolase inhibitor
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 98
structure length 296
sequence length 296
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drqA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drqA02
2IERA 4U3DA 4LCGA 3P3CA 3PS2A 4FW5A 4LCFA 4FW7A 4IS9A 5DRPA 4FW6A 2O3ZA 2JT2A 3U1YA 3NZKA 5DRQA 5DROA 1YH8A 1P42A 2GO4A 2VESA 1YHCA 4OKGA 3P3GA 4FW3A 4ISAA 3PS1A 1XXEA 4J3DA 2IESA 4LCHA 4MQYA 2GO3A 3UHMA 3PS3A 2J65A 5DRRA 4MDTA 4U3BA 3P76A 4FW4A 3P3EA 4OZEA
chains in the Genus database with same CATH superfamily
4LOMA 2Z5CA 1HNXE 2Q2EB 3P3CA 2PO0A 3K17A 4X62I 3J80Q 5LMUI 1ZXNA 4GKJE 5K36C 4GKJI 2BA1D 4JG4A 1HR0E 1FJGE 1IBMI 4YY3E 4X62E 4BA2B 4DV2I 4DPXA 2X7IA 1XNQE 2PO1B 3J80C 1N32E 4IFDB 4MDTA 3OTOE 2IOQA 4OO1D 2UUCI 4DV4E 1N33E 2C39A 3P3EA 1XMQI 2E5LE 3DD6A 4KHPI 1N36E 3T1HI 4DXLA 2O3ZA 2JT2A 5C0XB 4M1KA 4DR2I 4DV1E 3H4LA 1XMOI 2UXBI 4QNKA 1ZM4A 4LF4I 4MYTA 4IFDF 4DV2E 1H7UA 4JI2E 4JI2I 3ZM7A 5DNLA 4ZVIA 3Q6MA 1USVA 1N34E 2R3VA 3QT7A 1A6FA 1HK7A 5DRPA 5JEAB 4FW6A 1Y60A 1ZXMA 2O1VA 3GONA 1N33I 1Y6ZA 1Z0EA 2JEAB 4LF8E 4DU8A 5BR8E 4JI5E 2BA0G 3H1CA 1FKAE 3GLLA 4DR7I 1ZM9A 2HFUA 2J7KA 3P76A 1VISA 4HACB 4MYUA 1MX0A 4JV5E 2UXDE 1Z0TA 5JEAD 1UDQA 2UXCE 4DPWA 1Y4SA 4K0KE 4LF4E 4BA1A 2Z5BB 3CDJA 3D4JA 5K36A 3ZZ0A 3KRNA 4WUCA 2CVEA 4DV1I 4DR2E 5K36D 4GQUA 4DUYI 4DR1E 4JYAE 2UU9E 1Z0WA 4YHHI 4AM3A 4LCHA 3T1HE 5ELWA 4NXME 4LF5E 3WU3A 1I94E 4LFAI 2C37B 4JI7I 2UUCE 3K85A 3HJCA 3OTOI 2UUAI 4DV0I 3F0NA 3CWVA 4R1FA 3LPSA 2BV3A 3J7AM 4LF7I 3Q6NA 4IZJA 2O1TA 4DUZE 4IFDA 2VQFE 4BA1B 5DROA 1YH8A 2GO4A 2PNLA 3B4TA 2ZM6I 2C38A 1IBLE 4OX9E 1OYSA 5IWAE 3PS1A 4USKA 4XTJA 1Z59A 3PYGA 5K36F 3M7ND 3L7ZA 3T1YI 2VQEE 4FN5A 4OX9I 1Z0VA 2DEIA 1B63A 1EI1A 3LNUA 4JI0E 2NN6D 1KIJA 1IBKI 5C0XF 4Z7YA 3PYFA 4NBQA 2BR2A 1R6MA 3P06A 2PO2B 4IZKA 3LTOA 4AQYE 1HNWE 1HNZE 4DV0E 2HK3A 1HNWI 4PRVA 2NPFA 4X65E 5JEAE 2HHHI 4NXMI 4DV5I 2Z5BA 5K36B 4DU7A 2F4VE 3GCMA 4LF9I 5IT9C 4LF9E 4JI4E 2NN6A 2JE6A 5FLXQ 4LCFA 4USMA 2WW4A 4B3SE 4JI3E 4IS9A 3V5RA 2BR2B 2CG9A 2NN6B 2BM1A 4DPUA 3Q1QA 1P42A 1RREA 1QZRA 1YHCA 2UXDI 2ZBKB 2BA0D 2C39B 4UT4A 1HNZI 2HKJA 4B3TE 4DPYA 2R42A 3M7NG 4MU4A 5DNXA 2J65A 4DUZI 4EMDA 1UDNA 1PKPA 1D6TA 5C0XD 4OZEA 4BA2A 4WUDA 2UUAE 1NZ0A 4IZKB 1FWKA 1Z5CA 2CGEA 4LF5I 5EL9A 4OO1A 2Z5EA 2OI2A 5EKWA 1FWLA 1Z0BA 4LFBI 3HULA 1XNRE 2Z5CB 4DR1I 1UDSA 1IBLI 2BA1G 4JV5I 3JAMQ 4IFDC 1S4EA 4KQVA 4ISAA 2LJPA 2DEJA 4Z7CA 1RR9A 4LF6I 2C37A 2VQFI 2F1DA 3PS3A 1N0VC 2V8PA 5DRRA 4K0KI 1ZM3A 2JE6B 4JI5I 5IT9Q 1XMOE 1KTVA 2E1RA 4DV7I 3PYEA 3M85G 3ZZUA 4DR3I 3U1KA 4DR4I 4P7AA 2V2VA 4JI7E 1I94I 4IZJB 3J81Q 3ZKDA 1OYPA 5JEAC 1E3PA 2VESA 4OKGA 4YHHE 4LF8I 4KHPE 4JYAI 4DR4E 4HACA 4DUYE 4X64E 3CDIA 5K36E 4DV3I 3UHMA 1S16A 3J81C 4B3RE 1WUUA 2NN6C 1H74A 1MU5A 1RHYA 1HR0I 2GQ0A 3M85D 4OO1B 2V2ZA 1Y5YA 4LPFA 4URLA 2PO1A 4DR7E 3B78A 4UTGA 4B3RI 4AIMA 1N36I 5L3JA 2C38B 2UXBE 3QT6A 2V2QA 4DV4I 4X64I 1NHJA 2V34A 4MQYA 4JI6E 2O1UA 4HYMA 1ZM2A 4HXZA 5GMEA 3PRYA 3J7AG 1XMQE 4YY3I 2E5LI 4B3TI 4FW5A 4DV7E 4FW7A 1N32I 4FWHA 5JEAA 2PNMA 2X36A 2WP8A 4IFDE 1NHIA 1HNXI 1IBME 1FJGI 3WU6A 2AJ4A 2EFGA 2HFSA 4FW9A 4DV3E 2WP8B 1XHKA 4MU3A 4LFBE 2JEBA 5C0XE 1ELOA 1FI4A 4QNJA 4PRXA 1MG7A 3B82A 2PO2A 4JI6I 2HHHE 3PS2A 5C0XC 2VF3A 4X65I 4DR3E 2XEXA 1XNQI 4AQYI 3NZKA 1Z5AA 1BKNA 5DRQA 4IFDD 3ZKBA 4X66I 2JEAA 3L7ZB 4GKKE 1E3HA 1XXEA 1J5EI 4WUBA 1UEKA 2NN6F 5LMUE 4MU0A 3T1YE 1XNRI 2BM0A 1DARA 2A2CA 4OO1E 4HY1A 4LFCI 4DV6I 1R6LA 2IERA 4B3SI 4JI3I 1PVGA 5IWAI 4JI4I 3M6AA 1OYRA 4I3HA 3PYDA 4B3ME 1USUA 1H7SA 2IOPA 2IESA 4N3OA 2JEBB 4DR5I 5C0XA 4OO1F 4JI8I 1K47A 1KVKA 1EA6A 5LMNI 2AE8A 4MU1A 1Z0GA 5GMDA 3WU4A 4JI1I 4IZJD 4LF6E 2ZITA 1IBKE 4JI0I 2UU9I 4B3MI 2GS8A 3QT8A 4NXNE 3U1YA 2PNZA 5A2QQ 2F4VI 4DV5E 2UUBI 2UUBE 3P3GA 4ED4A 4DV6E 3QT5A 5A2QC 5LMNE 4JI8E 1J5EE 4RPFA 4DR6E 2HKEA 4FWDA 2PO0B 4GKKI 3HKMA 3V2UC 4X66E 4JI1E 3K1JA 3JAMC 4OO1C 4U3DA 2A2DA 4LCGA 4DPTA 4LF7E 2PNZB 1N0UA 5BR8I 4P52A 4DR6I 4DR5E 1U2RA 4PU9A 5LL6R 2WNRB 4LFAE 1H73A 1KKHA 4FWGA 1PIEA 2CZ9A 4NXNI 1H72C 2ZM6E 1VI7A 1Z5BA 1N34I 4U3BA 3ZZTA 1Y4UA 4LFCE 2UXCI 3B8HA 1NHHA 3GMEA 3WU5A 1OJ4A 5FLXC 4FW3A 2WNRA 4J3DA 2GO3A 1Z0CA 1UDOA 2O1WA 2VQEI 4AIDA 2HK2A 5JEAF 1B62A 1FNMA 4FW4A 2NN6E 5FWKA
chains in the Genus database with same CATH topology
2IERA 4U3DA 4LCGA 3P3CA 3PS2A 4FW5A 4LCFA 4FW7A 4IS9A 5DRPA 4FW6A 2O3ZA 2JT2A 3U1YA 3NZKA 5DRQA 5DROA 1YH8A 1P42A 2GO4A 2VESA 1YHCA 4OKGA 3P3GA 4FW3A 4ISAA 3PS1A 1XXEA 4J3DA 2IESA 4LCHA 4MQYA 2GO3A 3UHMA 3PS3A 2J65A 5DRRA 4MDTA 4U3BA 3P76A 4FW4A 3P3EA 4OZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IER A;  4U3D A;  4LCG A;  3P3C A;  3PS2 A;  4FW5 A;  4LCF A;  4FW7 A;  4IS9 A;  5DRP A;  4FW6 A;  2O3Z A;  2JT2 A;  3U1Y A;  3NZK A;  5DRQ A;  5DRO A;  1YH8 A;  1P42 A;  2GO4 A;  2VES A;  1YHC A;  4OKG A;  3P3G A;  4FW3 A;  4ISA A;  3PS1 A;  1XXE A;  4J3D A;  2IES A;  4LCH A;  4MQY A;  2GO3 A;  3UHM A;  3PS3 A;  2J65 A;  5DRR A;  4MDT A;  4U3B A;  3P76 A;  4FW4 A;  3P3E A;  4OZE A; 
#chains in the Genus database with same CATH topology
 4LOM A;  2Z5C A;  1HNX E;  2Q2E B;  3P3C A;  2PO0 A;  3K17 A;  4X62 I;  3J80 Q;  5LMU I;  1ZXN A;  4GKJ E;  5K36 C;  4GKJ I;  2BA1 D;  4JG4 A;  1HR0 E;  1FJG E;  1IBM I;  4YY3 E;  4X62 E;  4BA2 B;  4DV2 I;  4DPX A;  2X7I A;  1XNQ E;  2PO1 B;  3J80 C;  1N32 E;  4IFD B;  4MDT A;  3OTO E;  2IOQ A;  4OO1 D;  2UUC I;  4DV4 E;  1N33 E;  2C39 A;  3P3E A;  1XMQ I;  2E5L E;  3DD6 A;  4KHP I;  1N36 E;  3T1H I;  4DXL A;  2O3Z A;  2JT2 A;  5C0X B;  4M1K A;  4DR2 I;  4DV1 E;  3H4L A;  1XMO I;  2UXB I;  4QNK A;  1ZM4 A;  4LF4 I;  4MYT A;  4IFD F;  4DV2 E;  1H7U A;  4JI2 E;  4JI2 I;  3ZM7 A;  5DNL A;  4ZVI A;  3Q6M A;  1USV A;  1N34 E;  2R3V A;  3QT7 A;  1A6F A;  1HK7 A;  5DRP A;  5JEA B;  4FW6 A;  1Y60 A;  1ZXM A;  2O1V A;  3GON A;  1N33 I;  1Y6Z A;  1Z0E A;  2JEA B;  4LF8 E;  4DU8 A;  5BR8 E;  4JI5 E;  2BA0 G;  3H1C A;  1FKA E;  3GLL A;  4DR7 I;  1ZM9 A;  2HFU A;  2J7K A;  3P76 A;  1VIS A;  4HAC B;  4MYU A;  1MX0 A;  4JV5 E;  2UXD E;  1Z0T A;  5JEA D;  1UDQ A;  2UXC E;  4DPW A;  1Y4S A;  4K0K E;  4LF4 E;  4BA1 A;  2Z5B B;  3CDJ A;  3D4J A;  5K36 A;  3ZZ0 A;  3KRN A;  4WUC A;  2CVE A;  4DV1 I;  4DR2 E;  5K36 D;  4GQU A;  4DUY I;  4DR1 E;  4JYA E;  2UU9 E;  1Z0W A;  4YHH I;  4AM3 A;  4LCH A;  3T1H E;  5ELW A;  4NXM E;  4LF5 E;  3WU3 A;  1I94 E;  4LFA I;  2C37 B;  4JI7 I;  2UUC E;  3K85 A;  3HJC A;  3OTO I;  2UUA I;  4DV0 I;  3F0N A;  3CWV A;  4R1F A;  3LPS A;  2BV3 A;  3J7A M;  4LF7 I;  3Q6N A;  4IZJ A;  2O1T A;  4DUZ E;  4IFD A;  2VQF E;  4BA1 B;  5DRO A;  1YH8 A;  2GO4 A;  2PNL A;  3B4T A;  2ZM6 I;  2C38 A;  1IBL E;  4OX9 E;  1OYS A;  5IWA E;  3PS1 A;  4USK A;  4XTJ A;  1Z59 A;  3PYG A;  5K36 F;  3M7N D;  3L7Z A;  3T1Y I;  2VQE E;  4FN5 A;  4OX9 I;  1Z0V A;  2DEI A;  1B63 A;  1EI1 A;  3LNU A;  4JI0 E;  2NN6 D;  1KIJ A;  1IBK I;  5C0X F;  4Z7Y A;  3PYF A;  4NBQ A;  2BR2 A;  1R6M A;  3P06 A;  2PO2 B;  4IZK A;  3LTO A;  4AQY E;  1HNW E;  1HNZ E;  4DV0 E;  2HK3 A;  1HNW I;  4PRV A;  2NPF A;  4X65 E;  5JEA E;  2HHH I;  4NXM I;  4DV5 I;  2Z5B A;  5K36 B;  4DU7 A;  2F4V E;  3GCM A;  4LF9 I;  5IT9 C;  4LF9 E;  4JI4 E;  2NN6 A;  2JE6 A;  5FLX Q;  4LCF A;  4USM A;  2WW4 A;  4B3S E;  4JI3 E;  4IS9 A;  3V5R A;  2BR2 B;  2CG9 A;  2NN6 B;  2BM1 A;  4DPU A;  3Q1Q A;  1P42 A;  1RRE A;  1QZR A;  1YHC A;  2UXD I;  2ZBK B;  2BA0 D;  2C39 B;  4UT4 A;  1HNZ I;  2HKJ A;  4B3T E;  4DPY A;  2R42 A;  3M7N G;  4MU4 A;  5DNX A;  2J65 A;  4DUZ I;  4EMD A;  1UDN A;  1PKP A;  1D6T A;  5C0X D;  4OZE A;  4BA2 A;  4WUD A;  2UUA E;  1NZ0 A;  4IZK B;  1FWK A;  1Z5C A;  2CGE A;  4LF5 I;  5EL9 A;  4OO1 A;  2Z5E A;  2OI2 A;  5EKW A;  1FWL A;  1Z0B A;  4LFB I;  3HUL A;  1XNR E;  2Z5C B;  4DR1 I;  1UDS A;  1IBL I;  2BA1 G;  4JV5 I;  3JAM Q;  4IFD C;  1S4E A;  4KQV A;  4ISA A;  2LJP A;  2DEJ A;  4Z7C A;  1RR9 A;  4LF6 I;  2C37 A;  2VQF I;  2F1D A;  3PS3 A;  1N0V C;  2V8P A;  5DRR A;  4K0K I;  1ZM3 A;  2JE6 B;  4JI5 I;  5IT9 Q;  1XMO E;  1KTV A;  2E1R A;  4DV7 I;  3PYE A;  3M85 G;  3ZZU A;  4DR3 I;  3U1K A;  4DR4 I;  4P7A A;  2V2V A;  4JI7 E;  1I94 I;  4IZJ B;  3J81 Q;  3ZKD A;  1OYP A;  5JEA C;  1E3P A;  2VES A;  4OKG A;  4YHH E;  4LF8 I;  4KHP E;  4JYA I;  4DR4 E;  4HAC A;  4DUY E;  4X64 E;  3CDI A;  5K36 E;  4DV3 I;  3UHM A;  1S16 A;  3J81 C;  4B3R E;  1WUU A;  2NN6 C;  1H74 A;  1MU5 A;  1RHY A;  1HR0 I;  2GQ0 A;  3M85 D;  4OO1 B;  2V2Z A;  1Y5Y A;  4LPF A;  4URL A;  2PO1 A;  4DR7 E;  3B78 A;  4UTG A;  4B3R I;  4AIM A;  1N36 I;  5L3J A;  2C38 B;  2UXB E;  3QT6 A;  2V2Q A;  4DV4 I;  4X64 I;  1NHJ A;  2V34 A;  4MQY A;  4JI6 E;  2O1U A;  4HYM A;  1ZM2 A;  4HXZ A;  5GME A;  3PRY A;  3J7A G;  1XMQ E;  4YY3 I;  2E5L I;  4B3T I;  4FW5 A;  4DV7 E;  4FW7 A;  1N32 I;  4FWH A;  5JEA A;  2PNM A;  2X36 A;  2WP8 A;  4IFD E;  1NHI A;  1HNX I;  1IBM E;  1FJG I;  3WU6 A;  2AJ4 A;  2EFG A;  2HFS A;  4FW9 A;  4DV3 E;  2WP8 B;  1XHK A;  4MU3 A;  4LFB E;  2JEB A;  5C0X E;  1ELO A;  1FI4 A;  4QNJ A;  4PRX A;  1MG7 A;  3B82 A;  2PO2 A;  4JI6 I;  2HHH E;  3PS2 A;  5C0X C;  2VF3 A;  4X65 I;  4DR3 E;  2XEX A;  1XNQ I;  4AQY I;  3NZK A;  1Z5A A;  1BKN A;  5DRQ A;  4IFD D;  3ZKB A;  4X66 I;  2JEA A;  3L7Z B;  4GKK E;  1E3H A;  1XXE A;  1J5E I;  4WUB A;  1UEK A;  2NN6 F;  5LMU E;  4MU0 A;  3T1Y E;  1XNR I;  2BM0 A;  1DAR A;  2A2C A;  4OO1 E;  4HY1 A;  4LFC I;  4DV6 I;  1R6L A;  2IER A;  4B3S I;  4JI3 I;  1PVG A;  5IWA I;  4JI4 I;  3M6A A;  1OYR A;  4I3H A;  3PYD A;  4B3M E;  1USU A;  1H7S A;  2IOP A;  2IES A;  4N3O A;  2JEB B;  4DR5 I;  5C0X A;  4OO1 F;  4JI8 I;  1K47 A;  1KVK A;  1EA6 A;  5LMN I;  2AE8 A;  4MU1 A;  1Z0G A;  5GMD A;  3WU4 A;  4JI1 I;  4IZJ D;  4LF6 E;  2ZIT A;  1IBK E;  4JI0 I;  2UU9 I;  4B3M I;  2GS8 A;  3QT8 A;  4NXN E;  3U1Y A;  2PNZ A;  5A2Q Q;  2F4V I;  4DV5 E;  2UUB I;  2UUB E;  3P3G A;  4ED4 A;  4DV6 E;  3QT5 A;  5A2Q C;  5LMN E;  4JI8 E;  1J5E E;  4RPF A;  4DR6 E;  2HKE A;  4FWD A;  2PO0 B;  4GKK I;  3HKM A;  3V2U C;  4X66 E;  4JI1 E;  3K1J A;  3JAM C;  4OO1 C;  4U3D A;  2A2D A;  4LCG A;  4DPT A;  4LF7 E;  2PNZ B;  1N0U A;  5BR8 I;  4P52 A;  4DR6 I;  4DR5 E;  1U2R A;  4PU9 A;  5LL6 R;  2WNR B;  4LFA E;  1H73 A;  1KKH A;  4FWG A;  1PIE A;  2CZ9 A;  4NXN I;  1H72 C;  2ZM6 E;  1VI7 A;  1Z5B A;  1N34 I;  4U3B A;  3ZZT A;  1Y4U A;  4LFC E;  2UXC I;  3B8H A;  1NHH A;  3GME A;  3WU5 A;  1OJ4 A;  5FLX C;  4FW3 A;  2WNR A;  4J3D A;  2GO3 A;  1Z0C A;  1UDO A;  2O1W A;  2VQE I;  4AID A;  2HK2 A;  5JEA F;  1B62 A;  1FNM A;  4FW4 A;  2NN6 E;  5FWK A; 
#chains in the Genus database with same CATH homology
 2IER A;  4U3D A;  4LCG A;  3P3C A;  3PS2 A;  4FW5 A;  4LCF A;  4FW7 A;  4IS9 A;  5DRP A;  4FW6 A;  2O3Z A;  2JT2 A;  3U1Y A;  3NZK A;  5DRQ A;  5DRO A;  1YH8 A;  1P42 A;  2GO4 A;  2VES A;  1YHC A;  4OKG A;  3P3G A;  4FW3 A;  4ISA A;  3PS1 A;  1XXE A;  4J3D A;  2IES A;  4LCH A;  4MQY A;  2GO3 A;  3UHM A;  3PS3 A;  2J65 A;  5DRR A;  4MDT A;  4U3B A;  3P76 A;  4FW4 A;  3P3E A;  4OZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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