5DRQA

Crystal structure of the pseudomonas aeruginosa lpxc/lpc-040 complex
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
296
structure length
296
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
total genus 98
structure length 296
sequence length 296
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drqA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drqA02
2GO4A 2IERA 5DRPA 4U3BA 1XXEA 2O3ZA 4FW4A 3P3GA 3P3EA 1YHCA 4FW5A 2VESA 4FW6A 5DROA 4FW7A 4OKGA 4U3DA 4IS9A 4J3DA 4LCHA 4LCFA 3P3CA 3PS3A 3NZKA 2JT2A 3PS1A 5DRQA 3UHMA 4FW3A 4OZEA 4ISAA 3PS2A 3U1YA 3P76A 2IESA 2GO3A 5DRRA 2J65A 1YH8A 4LCGA 1P42A 4MQYA 4MDTA
chains in the Genus database with same CATH superfamily
2GO4A 2UXCE 2CZ9A 4FW4A 4LF4E 2HK3A 3M85D 1N34I 3T1YE 3B78A 1VISA 2X36A 4DR3I 4LCHA 5C0XD 1Z0BA 1OJ4A 4GKJE 4OO1D 4IFDD 1NHIA 4JI0I 2BA0G 3DD6A 2HHHE 4ISAA 2VF3A 4FWHA 4MYUA 2C38A 2J65A 2UUAI 2UUBI 4R1FA 4B3MI 4XTJA 1N33I 5A2QC 1PKPA 3J80C 1IBMI 1ELOA 1MX0A 3P3EA 1ZM3A 1R6MA 4I3HA 4BA2B 2A2DA 4DR4I 1KKHA 2BA1D 2WNRB 1Y60A 4DXLA 2IOPA 2DEIA 2R42A 1N32E 2J7KA 1D6TA 2NN6E 4RPFA 2CVEA 3CDJA 4K0KI 5IT9C 4M1KA 2O1WA 2UUCI 4JI7E 4X66I 4HACA 1S4EA 3P06A 5K36C 1B62A 2JEAA 1N36I 4HY1A 4DV1I 1RREA 4DR2I 4P52A 3Q6MA 3WU5A 3M85G 4FW6A 2HKJA 3ZKDA 4DUZI 1Z0VA 1XNQI 3L7ZA 4LFAI 4DR7I 3LTOA 2UXBE 2JT2A 2E5LE 1IBLI 3GLLA 2NN6D 2C39B 4LF5I 5C0XC 2O1UA 2CG9A 1ZM2A 5K36A 1Y4SA 4DPTA 4IFDC 4OO1C 4LF9E 4GQUA 1Z0CA 1WUUA 4ZVIA 1KVKA 1XMQI 4JI2I 2UU9I 3JAMC 4IZJB 3P3GA 5JEAF 4LFCI 1IBKI 4URLA 2C37B 4DUYE 2BA1G 5EKWA 1USUA 5JEAE 4J3DA 4WUBA 2NPFA 5A2QQ 5JEAB 2EFGA 4YY3I 3WU3A 5C0XA 3J80Q 3NZKA 1Y6ZA 4DU7A 2VQFI 4OO1A 4IFDA 4BA1B 2JE6B 4AQYE 4DV4E 1J5EE 1NZ0A 1Y5YA 2ZITA 4JYAE 4LFBE 4JV5E 5BR8I 4MDTA 2IERA 5DRPA 2Z5BA 1A6FA 1XNRI 1XXEA 3ZKBA 4NXME 5IT9Q 1VI7A 3OTOI 2Z5EA 4DV3I 2PNZA 5DNXA 4B3SI 4LF8I 1I94I 1QZRA 4LCFA 4NXNE 4LF7E 5K36F 1Y4UA 4X62E 1UDOA 3V2UC 1XHKA 4OX9I 4DV5E 5LMNI 2PO0B 3ZZUA 4P7AA 3HJCA 5DRRA 3QT7A 4IZKA 2VQEI 5DNLA 4JI4E 4DV0E 4PU9A 4JG4A 4JI8I 1E3PA 4JI1I 5IWAI 2UXDE 4JI0E 1Z0WA 1HNXI 2Q2EB 4DR6I 3H1CA 4JI5E 2WP8B 3K1JA 4DPUA 1USVA 3JAMQ 4AIMA 2GS8A 2UUBE 3Q6NA 2NN6A 1N33E 4OZEA 1HR0E 2PO2B 4B3RI 4DV2I 2BM1A 1IBME 4KQVA 3QT6A 3GONA 4MU1A 1XMOE 3D4JA 3U1KA 4Z7YA 3T1HE 4JI6I 4MU4A 4DR5I 1U2RA 3PYEA 1P42A 3WU4A 2ZM6E 1N0UA 3WU6A 4YHHI 4AIDA 4NBQA 1NHJA 3J81C 1ZXMA 3J7AG 1FJGI 4DV6E 4LF6I 2Z5CB 2UXCI 3PYGA 5LL6R 3ZM7A 4EMDA 4X66E 2JEBA 4WUDA 4GKJI 3QT5A 2HHHI 1Z59A 2GQ0A 3PYFA 5GMEA 1H73A 4DPWA 4X64I 2F4VE 3ZZ0A 1S16A 4X65I 4KHPE 4DV7E 1OYSA 3M6AA 2V8PA 3HKMA 4DPYA 3KRNA 1N0VC 3PS3A 5LMUE 2BR2A 4FN5A 4DU8A 2PO1A 1FI4A 2DEJA 3F0NA 1XMQE 1PVGA 2C38B 4LFCE 4MQYA 2BV3A 5FWKA 4GKKI 4DPXA 2IOQA 2VQFE 4DR1E 1KTVA 1RHYA 1H7UA 2A2CA 4MU0A 3J81Q 1K47A 3LNUA 2UXBI 2E5LI 5GMDA 1YH8A 1HNWI 1EA6A 4DV3E 1Z5BA 4HACB 1Z0TA 4IZJD 4LF8E 2JEAB 3Q1QA 1MG7A 4LF9I 2O1VA 1DARA 5JEAD 3L7ZB 4QNKA 4UTGA 1EI1A 3GCMA 2ZBKB 4N3OA 2VQEE 4DUYI 4JI3E 3PS2A 4B3TE 5K36E 3M7ND 5K36B 2V2QA 4JI1E 2R3VA 2NN6C 2HFUA 1N34E 3U1YA 4AQYI 3B8HA 1HNZI 4DR3E 3GMEA 1J5EI 1H7SA 2O3ZA 4JYAI 2V2VA 4JV5I 5C0XF 2VESA 1OYRA 4BA2A 4OKGA 4USKA 2WNRA 4OO1F 4IFDF 4ED4A 2CGEA 5C0XE 4NXMI 5C0XB 3LPSA 1Z5AA 4OO1E 2UUAE 4IFDE 4IFDB 4OO1B 4B3ME 1H72C 3V5RA 4NXNI 1HK7A 1OYPA 1E3HA 2F1DA 4MU3A 5ELWA 4LF7I 4X62I 3QT8A 4DV5I 4LF6E 4DR4E 2WW4A 1UEKA 2Z5BB 4WUCA 1Z0GA 4JI4I 3K17A 4DV0I 2PNLA 2PNZB 4U3DA 2XEXA 5L3JA 4LF4I 2UXDI 4K0KE 4USMA 3T1YI 2C39A 4MYTA 2UUCE 5JEAC 4JI5I 2IESA 4X64E 3M7NG 1N36E 4DV1E 4IZKB 4LOMA 4DR2E 2AE8A 1ZM4A 1HR0I 3HULA 4X65E 4DUZE 1XMOI 4UT4A 3K85A 5EL9A 3T1HI 4IZJA 1XNQE 2V2ZA 4LFAE 4DR7E 2ZM6I 3B4TA 1IBLE 4IS9A 2C37A 2NN6F 4LF5E 1R6LA 5JEAA 4DV6I 1Z5CA 3PS1A 2NN6B 1H74A 4BA1A 2JE6A 4GKKE 4FWDA 4JI2E 4PRXA 4HXZA 2UU9E 1FKAE 5FLXC 1N32I 1IBKE 2HKEA 1UDQA 3PYDA 1YHCA 4YY3E 5DROA 4JI7I 1Z0EA 2OI2A 1MU5A 4QNJA 2F4VI 3CDIA 1HNWE 2PNMA 4KHPI 4DV7I 2JEBB 4FW9A 5BR8E 5LMUI 3PRYA 2PO0A 1XNRE 2GO3A 1ZM9A 4LCGA 1UDNA 1ZXNA 2V34A 3OTOE 2E1RA 4U3BA 4B3SE 1I94E 3B82A 4FW5A 2LJPA 3J7AM 3H4LA 4OX9E 2WP8A 3P3CA 2BR2B 5LMNE 2PO1B 2BA0D 5DRQA 1FNMA 4DR1I 4PRVA 1KIJA 2PO2A 1HNZE 3P76A 2HK2A 4HYMA 2O1TA 4JI8E 4LPFA 5IWAE 1BKNA 4AM3A 3ZZTA 2HFSA 4DV4I 1HNXE 4DR6E 4LFBI 1FWKA 5FLXQ 4FW7A 2AJ4A 2Z5CA 1PIEA 3CWVA 4B3RE 1RR9A 4DV2E 1FWLA 1B63A 2X7IA 4JI6E 3UHMA 4FW3A 4FWGA 4DR5E 1NHHA 4Z7CA 4YHHE 5K36D 1UDSA 4JI3I 1FJGE 4B3TI 2BM0A
chains in the Genus database with same CATH topology
2GO4A 2IERA 5DRPA 4U3BA 1XXEA 2O3ZA 4FW4A 3P3GA 3P3EA 1YHCA 4FW5A 2VESA 4FW6A 5DROA 4FW7A 4OKGA 4U3DA 4IS9A 4J3DA 4LCHA 4LCFA 3P3CA 3PS3A 3NZKA 2JT2A 3PS1A 5DRQA 3UHMA 4FW3A 4OZEA 4ISAA 3PS2A 3U1YA 3P76A 2IESA 2GO3A 5DRRA 2J65A 1YH8A 4LCGA 1P42A 4MQYA 4MDTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GO4 A;  2IER A;  5DRP A;  4U3B A;  1XXE A;  2O3Z A;  4FW4 A;  3P3G A;  3P3E A;  1YHC A;  4FW5 A;  2VES A;  4FW6 A;  5DRO A;  4FW7 A;  4OKG A;  4U3D A;  4IS9 A;  4J3D A;  4LCH A;  4LCF A;  3P3C A;  3PS3 A;  3NZK A;  2JT2 A;  3PS1 A;  5DRQ A;  3UHM A;  4FW3 A;  4OZE A;  4ISA A;  3PS2 A;  3U1Y A;  3P76 A;  2IES A;  2GO3 A;  5DRR A;  2J65 A;  1YH8 A;  4LCG A;  1P42 A;  4MQY A;  4MDT A; 
#chains in the Genus database with same CATH topology
 2GO4 A;  2UXC E;  2CZ9 A;  4FW4 A;  4LF4 E;  2HK3 A;  3M85 D;  1N34 I;  3T1Y E;  3B78 A;  1VIS A;  2X36 A;  4DR3 I;  4LCH A;  5C0X D;  1Z0B A;  1OJ4 A;  4GKJ E;  4OO1 D;  4IFD D;  1NHI A;  4JI0 I;  2BA0 G;  3DD6 A;  2HHH E;  4ISA A;  2VF3 A;  4FWH A;  4MYU A;  2C38 A;  2J65 A;  2UUA I;  2UUB I;  4R1F A;  4B3M I;  4XTJ A;  1N33 I;  5A2Q C;  1PKP A;  3J80 C;  1IBM I;  1ELO A;  1MX0 A;  3P3E A;  1ZM3 A;  1R6M A;  4I3H A;  4BA2 B;  2A2D A;  4DR4 I;  1KKH A;  2BA1 D;  2WNR B;  1Y60 A;  4DXL A;  2IOP A;  2DEI A;  2R42 A;  1N32 E;  2J7K A;  1D6T A;  2NN6 E;  4RPF A;  2CVE A;  3CDJ A;  4K0K I;  5IT9 C;  4M1K A;  2O1W A;  2UUC I;  4JI7 E;  4X66 I;  4HAC A;  1S4E A;  3P06 A;  5K36 C;  1B62 A;  2JEA A;  1N36 I;  4HY1 A;  4DV1 I;  1RRE A;  4DR2 I;  4P52 A;  3Q6M A;  3WU5 A;  3M85 G;  4FW6 A;  2HKJ A;  3ZKD A;  4DUZ I;  1Z0V A;  1XNQ I;  3L7Z A;  4LFA I;  4DR7 I;  3LTO A;  2UXB E;  2JT2 A;  2E5L E;  1IBL I;  3GLL A;  2NN6 D;  2C39 B;  4LF5 I;  5C0X C;  2O1U A;  2CG9 A;  1ZM2 A;  5K36 A;  1Y4S A;  4DPT A;  4IFD C;  4OO1 C;  4LF9 E;  4GQU A;  1Z0C A;  1WUU A;  4ZVI A;  1KVK A;  1XMQ I;  4JI2 I;  2UU9 I;  3JAM C;  4IZJ B;  3P3G A;  5JEA F;  4LFC I;  1IBK I;  4URL A;  2C37 B;  4DUY E;  2BA1 G;  5EKW A;  1USU A;  5JEA E;  4J3D A;  4WUB A;  2NPF A;  5A2Q Q;  5JEA B;  2EFG A;  4YY3 I;  3WU3 A;  5C0X A;  3J80 Q;  3NZK A;  1Y6Z A;  4DU7 A;  2VQF I;  4OO1 A;  4IFD A;  4BA1 B;  2JE6 B;  4AQY E;  4DV4 E;  1J5E E;  1NZ0 A;  1Y5Y A;  2ZIT A;  4JYA E;  4LFB E;  4JV5 E;  5BR8 I;  4MDT A;  2IER A;  5DRP A;  2Z5B A;  1A6F A;  1XNR I;  1XXE A;  3ZKB A;  4NXM E;  5IT9 Q;  1VI7 A;  3OTO I;  2Z5E A;  4DV3 I;  2PNZ A;  5DNX A;  4B3S I;  4LF8 I;  1I94 I;  1QZR A;  4LCF A;  4NXN E;  4LF7 E;  5K36 F;  1Y4U A;  4X62 E;  1UDO A;  3V2U C;  1XHK A;  4OX9 I;  4DV5 E;  5LMN I;  2PO0 B;  3ZZU A;  4P7A A;  3HJC A;  5DRR A;  3QT7 A;  4IZK A;  2VQE I;  5DNL A;  4JI4 E;  4DV0 E;  4PU9 A;  4JG4 A;  4JI8 I;  1E3P A;  4JI1 I;  5IWA I;  2UXD E;  4JI0 E;  1Z0W A;  1HNX I;  2Q2E B;  4DR6 I;  3H1C A;  4JI5 E;  2WP8 B;  3K1J A;  4DPU A;  1USV A;  3JAM Q;  4AIM A;  2GS8 A;  2UUB E;  3Q6N A;  2NN6 A;  1N33 E;  4OZE A;  1HR0 E;  2PO2 B;  4B3R I;  4DV2 I;  2BM1 A;  1IBM E;  4KQV A;  3QT6 A;  3GON A;  4MU1 A;  1XMO E;  3D4J A;  3U1K A;  4Z7Y A;  3T1H E;  4JI6 I;  4MU4 A;  4DR5 I;  1U2R A;  3PYE A;  1P42 A;  3WU4 A;  2ZM6 E;  1N0U A;  3WU6 A;  4YHH I;  4AID A;  4NBQ A;  1NHJ A;  3J81 C;  1ZXM A;  3J7A G;  1FJG I;  4DV6 E;  4LF6 I;  2Z5C B;  2UXC I;  3PYG A;  5LL6 R;  3ZM7 A;  4EMD A;  4X66 E;  2JEB A;  4WUD A;  4GKJ I;  3QT5 A;  2HHH I;  1Z59 A;  2GQ0 A;  3PYF A;  5GME A;  1H73 A;  4DPW A;  4X64 I;  2F4V E;  3ZZ0 A;  1S16 A;  4X65 I;  4KHP E;  4DV7 E;  1OYS A;  3M6A A;  2V8P A;  3HKM A;  4DPY A;  3KRN A;  1N0V C;  3PS3 A;  5LMU E;  2BR2 A;  4FN5 A;  4DU8 A;  2PO1 A;  1FI4 A;  2DEJ A;  3F0N A;  1XMQ E;  1PVG A;  2C38 B;  4LFC E;  4MQY A;  2BV3 A;  5FWK A;  4GKK I;  4DPX A;  2IOQ A;  2VQF E;  4DR1 E;  1KTV A;  1RHY A;  1H7U A;  2A2C A;  4MU0 A;  3J81 Q;  1K47 A;  3LNU A;  2UXB I;  2E5L I;  5GMD A;  1YH8 A;  1HNW I;  1EA6 A;  4DV3 E;  1Z5B A;  4HAC B;  1Z0T A;  4IZJ D;  4LF8 E;  2JEA B;  3Q1Q A;  1MG7 A;  4LF9 I;  2O1V A;  1DAR A;  5JEA D;  3L7Z B;  4QNK A;  4UTG A;  1EI1 A;  3GCM A;  2ZBK B;  4N3O A;  2VQE E;  4DUY I;  4JI3 E;  3PS2 A;  4B3T E;  5K36 E;  3M7N D;  5K36 B;  2V2Q A;  4JI1 E;  2R3V A;  2NN6 C;  2HFU A;  1N34 E;  3U1Y A;  4AQY I;  3B8H A;  1HNZ I;  4DR3 E;  3GME A;  1J5E I;  1H7S A;  2O3Z A;  4JYA I;  2V2V A;  4JV5 I;  5C0X F;  2VES A;  1OYR A;  4BA2 A;  4OKG A;  4USK A;  2WNR A;  4OO1 F;  4IFD F;  4ED4 A;  2CGE A;  5C0X E;  4NXM I;  5C0X B;  3LPS A;  1Z5A A;  4OO1 E;  2UUA E;  4IFD E;  4IFD B;  4OO1 B;  4B3M E;  1H72 C;  3V5R A;  4NXN I;  1HK7 A;  1OYP A;  1E3H A;  2F1D A;  4MU3 A;  5ELW A;  4LF7 I;  4X62 I;  3QT8 A;  4DV5 I;  4LF6 E;  4DR4 E;  2WW4 A;  1UEK A;  2Z5B B;  4WUC A;  1Z0G A;  4JI4 I;  3K17 A;  4DV0 I;  2PNL A;  2PNZ B;  4U3D A;  2XEX A;  5L3J A;  4LF4 I;  2UXD I;  4K0K E;  4USM A;  3T1Y I;  2C39 A;  4MYT A;  2UUC E;  5JEA C;  4JI5 I;  2IES A;  4X64 E;  3M7N G;  1N36 E;  4DV1 E;  4IZK B;  4LOM A;  4DR2 E;  2AE8 A;  1ZM4 A;  1HR0 I;  3HUL A;  4X65 E;  4DUZ E;  1XMO I;  4UT4 A;  3K85 A;  5EL9 A;  3T1H I;  4IZJ A;  1XNQ E;  2V2Z A;  4LFA E;  4DR7 E;  2ZM6 I;  3B4T A;  1IBL E;  4IS9 A;  2C37 A;  2NN6 F;  4LF5 E;  1R6L A;  5JEA A;  4DV6 I;  1Z5C A;  3PS1 A;  2NN6 B;  1H74 A;  4BA1 A;  2JE6 A;  4GKK E;  4FWD A;  4JI2 E;  4PRX A;  4HXZ A;  2UU9 E;  1FKA E;  5FLX C;  1N32 I;  1IBK E;  2HKE A;  1UDQ A;  3PYD A;  1YHC A;  4YY3 E;  5DRO A;  4JI7 I;  1Z0E A;  2OI2 A;  1MU5 A;  4QNJ A;  2F4V I;  3CDI A;  1HNW E;  2PNM A;  4KHP I;  4DV7 I;  2JEB B;  4FW9 A;  5BR8 E;  5LMU I;  3PRY A;  2PO0 A;  1XNR E;  2GO3 A;  1ZM9 A;  4LCG A;  1UDN A;  1ZXN A;  2V34 A;  3OTO E;  2E1R A;  4U3B A;  4B3S E;  1I94 E;  3B82 A;  4FW5 A;  2LJP A;  3J7A M;  3H4L A;  4OX9 E;  2WP8 A;  3P3C A;  2BR2 B;  5LMN E;  2PO1 B;  2BA0 D;  5DRQ A;  1FNM A;  4DR1 I;  4PRV A;  1KIJ A;  2PO2 A;  1HNZ E;  3P76 A;  2HK2 A;  4HYM A;  2O1T A;  4JI8 E;  4LPF A;  5IWA E;  1BKN A;  4AM3 A;  3ZZT A;  2HFS A;  4DV4 I;  1HNX E;  4DR6 E;  4LFB I;  1FWK A;  5FLX Q;  4FW7 A;  2AJ4 A;  2Z5C A;  1PIE A;  3CWV A;  4B3R E;  1RR9 A;  4DV2 E;  1FWL A;  1B63 A;  2X7I A;  4JI6 E;  3UHM A;  4FW3 A;  4FWG A;  4DR5 E;  1NHH A;  4Z7C A;  4YHH E;  5K36 D;  1UDS A;  4JI3 I;  1FJG E;  4B3T I;  2BM0 A; 
#chains in the Genus database with same CATH homology
 2GO4 A;  2IER A;  5DRP A;  4U3B A;  1XXE A;  2O3Z A;  4FW4 A;  3P3G A;  3P3E A;  1YHC A;  4FW5 A;  2VES A;  4FW6 A;  5DRO A;  4FW7 A;  4OKG A;  4U3D A;  4IS9 A;  4J3D A;  4LCH A;  4LCF A;  3P3C A;  3PS3 A;  3NZK A;  2JT2 A;  3PS1 A;  5DRQ A;  3UHM A;  4FW3 A;  4OZE A;  4ISA A;  3PS2 A;  3U1Y A;  3P76 A;  2IES A;  2GO3 A;  5DRR A;  2J65 A;  1YH8 A;  4LCG A;  1P42 A;  4MQY A;  4MDT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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