2AE8A

Crystal structure of imidazoleglycerol-phosphate dehydratase from staphylococcus aureus subsp. aureus n315
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
179
structure length
171
Chain Sequence
b'MIYQKQRTQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Crystal Structure of Imidazoleglycerol-phosphate Dehydratase from Staphylococcus aureus subsp. aureus N315
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Lyase
total genus 49
structure length 171
sequence length 179
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A01
4GQUA 4MU1A 4QNJA 4MU3A 5EKWA 5ELWA 5DNXA 4LPFA 4LOMA 2F1DA 2AE8A 5DNLA 4QNKA 1RHYA 4MU0A 5EL9A 4MU4A
chains in the Genus database with same CATH superfamily
4DV5I 4JI3I 3HKMA 2UUCI 4DV0E 2BA0D 4PRXA 1XMQI 2UUAE 4OO1E 5EL9A 3M7ND 4OO1D 3T1YI 4LFBE 2JE6A 2PO1A 2VESA 4LFCI 5JEAE 4R1FA 4JYAE 4LF7I 3B4TA 3LNUA 5JEAD 2JE6B 2HK2A 2DEIA 5IT9C 4P7AA 1UDSA 4DV3I 3ZZ0A 5GMDA 1IBME 3M85D 2PNLA 3GCMA 1I94E 2X36A 4HACA 4GQUA 1HR0E 4JI4I 4LOMA 2JEAA 1B62A 1N0UA 2GS8A 4DV5E 4HACB 4LF5I 1RR9A 2GQ0A 2R42A 5DRRA 4NXMI 4ISAA 4B3TI 1J5EE 2JEAB 3Q1QA 4FWGA 1USVA 2O1TA 3T1YE 4IFDE 2EFGA 1ZM9A 2V2VA 4UT4A 2CGEA 4LFCE 4IFDD 2E5LE 2BM1A 1FWLA 4DV3E 4JV5I 2UXCI 1Z0VA 2HFSA 4DR6E 1IBKI 4LF4I 5ELWA 1XHKA 4JI4E 1Z5CA 2Z5CB 4UTGA 2PNMA 4LCGA 4DV4E 1N34I 2HHHE 2UXBE 4MQYA 2C39B 4DPYA 4DV1I 1Y60A 3PS1A 4NXME 1FJGE 4DR2I 4B3TE 1OYPA 2JT2A 1D6TA 4LF8I 1ZM3A 1N0VC 4X66I 1Y6ZA 1MX0A 2UU9I 4IZJD 4DXLA 4MU3A 3L7ZA 4P52A 4JV5E 4MYTA 4HY1A 2JEBA 2O3ZA 4DR3E 3LTOA 2C38A 4NXNI 4JI7E 4LFAI 3NZKA 5LL6R 1ELOA 1N34E 4ZVIA 1YH8A 2C38B 4DR4I 4DPUA 2DEJA 3Q6MA 2F4VI 3PYFA 5IWAI 4DR2E 4BA2A 4N3OA 5DNLA 4LF8E 5L3JA 1S16A 4X66E 4MU4A 4BA2B 2VQFE 3UHMA 4DU8A 4FW4A 2VF3A 4DV6I 5K36A 5K36C 1E3PA 2UXDE 4GKKI 1FI4A 5LMNI 2CZ9A 4DR1I 5K36B 2HKJA 1RREA 3CWVA 4JI0I 1Z0TA 2WP8A 1N36I 1Z0CA 1Z59A 4PRVA 1H72C 1ZXMA 4LF6E 4DV7I 5IT9Q 4LF9I 2PO1B 3WU6A 4FW7A 2WP8B 5K36E 4KQVA 4OX9E 2XEXA 4KHPI 3KRNA 1UEKA 3ZM7A 3QT7A 1XNRE 1XNQI 1UDOA 2C37A 5K36F 3GMEA 3M6AA 3WU5A 1KKHA 2BR2A 3PYGA 1N32I 4DV6E 4X64I 4GKJI 3P3CA 2C37B 4JI3E 2UUCE 1XMQE 4GKKE 2BR2B 1ZXNA 1XXEA 2PO2A 4FW5A 4USKA 3B82A 3PYDA 5GMEA 3K1JA 2ZM6I 1DARA 2NN6A 2NN6C 4BA1A 4B3RI 1N36E 2PO2B 3J81Q 3K85A 3J81C 4LF7E 2O1WA 2NN6B 2UUBI 3CDJA 4BA1B 1H7SA 4WUCA 1NZ0A 1Z0GA 4FWHA 1NHJA 4U3DA 2GO3A 2BA1G 4B3SI 1EI1A 3J7AM 2WNRA 1XNQE 1ZM2A 3WU4A 1N32E 2WW4A 4K0KI 1Z5BA 2V8PA 4X64E 4GKJE 1OYRA 4FN5A 2WNRB 4DU7A 4QNKA 4LF5E 3P06A 4DR5I 5EKWA 4M1KA 3V2UC 2NN6F 5DRPA 3B8HA 2ZM6E 1PKPA 4DUYI 4ED4A 4Z7CA 5BR8I 4B3RE 1XMOI 1NHIA 1KVKA 1Z5AA 1N33I 4YY3I 3JAMQ 4IS9A 4AM3A 3JAMC 2X7IA 4URLA 2UXCE 3J80Q 5C0XA 5C0XC 1IBKE 4U3BA 4LF4E 1Y4SA 4DR7I 3J80C 3L7ZB 4WUDA 3M85G 4X65I 1P42A 4OZEA 2JEBB 5C0XB 4K0KE 4B3MI 3CDIA 4DV1E 2PO0A 4DV2I 4DR5E 2A2DA 3H4LA 4LCFA 1BKNA 4DV0I 4YHHI 1OJ4A 4JI1I 4DUYE 2PO0B 5BR8E 1XMOE 1N33E 4FW3A 4YY3E 2UU9E 1USUA 4DUZI 1FKAE 1U2RA 5C0XF 4OO1A 1UDNA 4OO1C 3PS3A 2IOQA 2NPFA 1VISA 4IZKA 2O1VA 4AIMA 1FNMA 2HFUA 2Q2EB 4OO1B 1H73A 2ZITA 4FW6A 1S4EA 5JEAA 5JEAC 4NXNE 4LFAE 2ZBKB 2Z5BA 4X62I 1I94I 4PU9A 4B3ME 1EA6A 1FWKA 4JI8I 4DR4E 2F4VE 5JEAB 4DV2E 3P3EA 5IWAE 3GONA 4FWDA 2Z5BB 3K17A 4MYUA 1RHYA 1MU5A 3T1HI 1HNXI 1Z0WA 4MU1A 1WUUA 4YHHE 3J7AG 1IBLI 4JI5I 4JI1E 3D4JA 3H1CA 1J5EI 5K36D 2VQEI 2IESA 3QT6A 4LCHA 4OO1F 3P76A 3QT8A 3DD6A 4DUZE 4HXZA 4JI6I 3WU3A 2E5LI 1HNWI 2HK3A 5A2QQ 3U1YA 2A2CA 5LMNE 5A2QC 2J7KA 5JEAF 4DR1E 4IFDA 4IFDC 4DPXA 4JI2I 3U1KA 4NBQA 4DR6I 4JI0E 3Q6NA 1A6FA 3F0NA 4X62E 4IFDB 4JG4A 4WUBA 3LPSA 2PNZA 3ZZUA 5FWKA 4JI8E 4DV7E 1Z0BA 4LF9E 5DRQA 3OTOI 4DV4I 2HHHI 3T1HE 2PNZB 1KTVA 2O1UA 1HNXE 2UXBI 3ZKBA 1B63A 1IBLE 4JI5E 1FJGI 4KHPE 1R6LA 1E3HA 2VQEE 2J65A 4AQYI 2F1DA 2NN6E 2AJ4A 3GLLA 1KIJA 1H74A 4MU0A 4JI6E 3ZKDA 5FLXQ 4IFDF 4FW9A 1HNWE 2NN6D 1K47A 4OKGA 5FLXC 2Z5EA 2BM0A 1Z0EA 4JI2E 2BA0G 4IZJA 2AE8A 2Z5CA 2HKEA 3M7NG 3ZZTA 4DR3I 2V2ZA 2C39A 4IZJB 1PVGA 1UDQA 4JI7I 2UUBE 4I3HA 1VI7A 2BV3A 4DPWA 4Z7YA 3OTOE 1R6MA 1HNZI 1QZRA 2V34A 3PYEA 4B3SE 2IOPA 2GO4A 4AQYE 1OYSA 4MDTA 5LMUI 4QNJA 4DPTA 2VQFI 3P3GA 2IERA 3HULA 4XTJA 1MG7A 3QT5A 1HK7A 2R3VA 5DNXA 2UXDI 4HYMA 2UUAI 1ZM4A 4EMDA 3PS2A 5C0XE 3V5RA 4LFBI 1Y4UA 2LJPA 4RPFA 5C0XD 4USMA 1HNZE 2CG9A 4JYAI 4LF6I 3B78A 3PRYA 5DROA 2CVEA 1H7UA 2BA1D 4DR7E 1YHCA 2OI2A 1IBMI 2E1RA 4X65E 4AIDA 4OX9I 2V2QA 3HJCA 4IZKB 4J3DA 5LMUE 1XNRI 1Y5YA 4LPFA 1HR0I 1NHHA 1PIEA
chains in the Genus database with same CATH topology
4GQUA 4MU1A 4QNJA 4MU3A 5EKWA 5ELWA 5DNXA 4LPFA 4LOMA 2F1DA 2AE8A 5DNLA 4QNKA 1RHYA 4MU0A 5EL9A 4MU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  4MU1 A;  4QNJ A;  4MU3 A;  5EKW A;  5ELW A;  5DNX A;  4LPF A;  4LOM A;  2F1D A;  2AE8 A;  5DNL A;  4QNK A;  1RHY A;  4MU0 A;  5EL9 A;  4MU4 A; 
#chains in the Genus database with same CATH topology
 4DV5 I;  4JI3 I;  3HKM A;  2UUC I;  4DV0 E;  2BA0 D;  4PRX A;  1XMQ I;  2UUA E;  4OO1 E;  5EL9 A;  3M7N D;  4OO1 D;  3T1Y I;  4LFB E;  2JE6 A;  2PO1 A;  2VES A;  4LFC I;  5JEA E;  4R1F A;  4JYA E;  4LF7 I;  3B4T A;  3LNU A;  5JEA D;  2JE6 B;  2HK2 A;  2DEI A;  5IT9 C;  4P7A A;  1UDS A;  4DV3 I;  3ZZ0 A;  5GMD A;  1IBM E;  3M85 D;  2PNL A;  3GCM A;  1I94 E;  2X36 A;  4HAC A;  4GQU A;  1HR0 E;  4JI4 I;  4LOM A;  2JEA A;  1B62 A;  1N0U A;  2GS8 A;  4DV5 E;  4HAC B;  4LF5 I;  1RR9 A;  2GQ0 A;  2R42 A;  5DRR A;  4NXM I;  4ISA A;  4B3T I;  1J5E E;  2JEA B;  3Q1Q A;  4FWG A;  1USV A;  2O1T A;  3T1Y E;  4IFD E;  2EFG A;  1ZM9 A;  2V2V A;  4UT4 A;  2CGE A;  4LFC E;  4IFD D;  2E5L E;  2BM1 A;  1FWL A;  4DV3 E;  4JV5 I;  2UXC I;  1Z0V A;  2HFS A;  4DR6 E;  1IBK I;  4LF4 I;  5ELW A;  1XHK A;  4JI4 E;  1Z5C A;  2Z5C B;  4UTG A;  2PNM A;  4LCG A;  4DV4 E;  1N34 I;  2HHH E;  2UXB E;  4MQY A;  2C39 B;  4DPY A;  4DV1 I;  1Y60 A;  3PS1 A;  4NXM E;  1FJG E;  4DR2 I;  4B3T E;  1OYP A;  2JT2 A;  1D6T A;  4LF8 I;  1ZM3 A;  1N0V C;  4X66 I;  1Y6Z A;  1MX0 A;  2UU9 I;  4IZJ D;  4DXL A;  4MU3 A;  3L7Z A;  4P52 A;  4JV5 E;  4MYT A;  4HY1 A;  2JEB A;  2O3Z A;  4DR3 E;  3LTO A;  2C38 A;  4NXN I;  4JI7 E;  4LFA I;  3NZK A;  5LL6 R;  1ELO A;  1N34 E;  4ZVI A;  1YH8 A;  2C38 B;  4DR4 I;  4DPU A;  2DEJ A;  3Q6M A;  2F4V I;  3PYF A;  5IWA I;  4DR2 E;  4BA2 A;  4N3O A;  5DNL A;  4LF8 E;  5L3J A;  1S16 A;  4X66 E;  4MU4 A;  4BA2 B;  2VQF E;  3UHM A;  4DU8 A;  4FW4 A;  2VF3 A;  4DV6 I;  5K36 A;  5K36 C;  1E3P A;  2UXD E;  4GKK I;  1FI4 A;  5LMN I;  2CZ9 A;  4DR1 I;  5K36 B;  2HKJ A;  1RRE A;  3CWV A;  4JI0 I;  1Z0T A;  2WP8 A;  1N36 I;  1Z0C A;  1Z59 A;  4PRV A;  1H72 C;  1ZXM A;  4LF6 E;  4DV7 I;  5IT9 Q;  4LF9 I;  2PO1 B;  3WU6 A;  4FW7 A;  2WP8 B;  5K36 E;  4KQV A;  4OX9 E;  2XEX A;  4KHP I;  3KRN A;  1UEK A;  3ZM7 A;  3QT7 A;  1XNR E;  1XNQ I;  1UDO A;  2C37 A;  5K36 F;  3GME A;  3M6A A;  3WU5 A;  1KKH A;  2BR2 A;  3PYG A;  1N32 I;  4DV6 E;  4X64 I;  4GKJ I;  3P3C A;  2C37 B;  4JI3 E;  2UUC E;  1XMQ E;  4GKK E;  2BR2 B;  1ZXN A;  1XXE A;  2PO2 A;  4FW5 A;  4USK A;  3B82 A;  3PYD A;  5GME A;  3K1J A;  2ZM6 I;  1DAR A;  2NN6 A;  2NN6 C;  4BA1 A;  4B3R I;  1N36 E;  2PO2 B;  3J81 Q;  3K85 A;  3J81 C;  4LF7 E;  2O1W A;  2NN6 B;  2UUB I;  3CDJ A;  4BA1 B;  1H7S A;  4WUC A;  1NZ0 A;  1Z0G A;  4FWH A;  1NHJ A;  4U3D A;  2GO3 A;  2BA1 G;  4B3S I;  1EI1 A;  3J7A M;  2WNR A;  1XNQ E;  1ZM2 A;  3WU4 A;  1N32 E;  2WW4 A;  4K0K I;  1Z5B A;  2V8P A;  4X64 E;  4GKJ E;  1OYR A;  4FN5 A;  2WNR B;  4DU7 A;  4QNK A;  4LF5 E;  3P06 A;  4DR5 I;  5EKW A;  4M1K A;  3V2U C;  2NN6 F;  5DRP A;  3B8H A;  2ZM6 E;  1PKP A;  4DUY I;  4ED4 A;  4Z7C A;  5BR8 I;  4B3R E;  1XMO I;  1NHI A;  1KVK A;  1Z5A A;  1N33 I;  4YY3 I;  3JAM Q;  4IS9 A;  4AM3 A;  3JAM C;  2X7I A;  4URL A;  2UXC E;  3J80 Q;  5C0X A;  5C0X C;  1IBK E;  4U3B A;  4LF4 E;  1Y4S A;  4DR7 I;  3J80 C;  3L7Z B;  4WUD A;  3M85 G;  4X65 I;  1P42 A;  4OZE A;  2JEB B;  5C0X B;  4K0K E;  4B3M I;  3CDI A;  4DV1 E;  2PO0 A;  4DV2 I;  4DR5 E;  2A2D A;  3H4L A;  4LCF A;  1BKN A;  4DV0 I;  4YHH I;  1OJ4 A;  4JI1 I;  4DUY E;  2PO0 B;  5BR8 E;  1XMO E;  1N33 E;  4FW3 A;  4YY3 E;  2UU9 E;  1USU A;  4DUZ I;  1FKA E;  1U2R A;  5C0X F;  4OO1 A;  1UDN A;  4OO1 C;  3PS3 A;  2IOQ A;  2NPF A;  1VIS A;  4IZK A;  2O1V A;  4AIM A;  1FNM A;  2HFU A;  2Q2E B;  4OO1 B;  1H73 A;  2ZIT A;  4FW6 A;  1S4E A;  5JEA A;  5JEA C;  4NXN E;  4LFA E;  2ZBK B;  2Z5B A;  4X62 I;  1I94 I;  4PU9 A;  4B3M E;  1EA6 A;  1FWK A;  4JI8 I;  4DR4 E;  2F4V E;  5JEA B;  4DV2 E;  3P3E A;  5IWA E;  3GON A;  4FWD A;  2Z5B B;  3K17 A;  4MYU A;  1RHY A;  1MU5 A;  3T1H I;  1HNX I;  1Z0W A;  4MU1 A;  1WUU A;  4YHH E;  3J7A G;  1IBL I;  4JI5 I;  4JI1 E;  3D4J A;  3H1C A;  1J5E I;  5K36 D;  2VQE I;  2IES A;  3QT6 A;  4LCH A;  4OO1 F;  3P76 A;  3QT8 A;  3DD6 A;  4DUZ E;  4HXZ A;  4JI6 I;  3WU3 A;  2E5L I;  1HNW I;  2HK3 A;  5A2Q Q;  3U1Y A;  2A2C A;  5LMN E;  5A2Q C;  2J7K A;  5JEA F;  4DR1 E;  4IFD A;  4IFD C;  4DPX A;  4JI2 I;  3U1K A;  4NBQ A;  4DR6 I;  4JI0 E;  3Q6N A;  1A6F A;  3F0N A;  4X62 E;  4IFD B;  4JG4 A;  4WUB A;  3LPS A;  2PNZ A;  3ZZU A;  5FWK A;  4JI8 E;  4DV7 E;  1Z0B A;  4LF9 E;  5DRQ A;  3OTO I;  4DV4 I;  2HHH I;  3T1H E;  2PNZ B;  1KTV A;  2O1U A;  1HNX E;  2UXB I;  3ZKB A;  1B63 A;  1IBL E;  4JI5 E;  1FJG I;  4KHP E;  1R6L A;  1E3H A;  2VQE E;  2J65 A;  4AQY I;  2F1D A;  2NN6 E;  2AJ4 A;  3GLL A;  1KIJ A;  1H74 A;  4MU0 A;  4JI6 E;  3ZKD A;  5FLX Q;  4IFD F;  4FW9 A;  1HNW E;  2NN6 D;  1K47 A;  4OKG A;  5FLX C;  2Z5E A;  2BM0 A;  1Z0E A;  4JI2 E;  2BA0 G;  4IZJ A;  2AE8 A;  2Z5C A;  2HKE A;  3M7N G;  3ZZT A;  4DR3 I;  2V2Z A;  2C39 A;  4IZJ B;  1PVG A;  1UDQ A;  4JI7 I;  2UUB E;  4I3H A;  1VI7 A;  2BV3 A;  4DPW A;  4Z7Y A;  3OTO E;  1R6M A;  1HNZ I;  1QZR A;  2V34 A;  3PYE A;  4B3S E;  2IOP A;  2GO4 A;  4AQY E;  1OYS A;  4MDT A;  5LMU I;  4QNJ A;  4DPT A;  2VQF I;  3P3G A;  2IER A;  3HUL A;  4XTJ A;  1MG7 A;  3QT5 A;  1HK7 A;  2R3V A;  5DNX A;  2UXD I;  4HYM A;  2UUA I;  1ZM4 A;  4EMD A;  3PS2 A;  5C0X E;  3V5R A;  4LFB I;  1Y4U A;  2LJP A;  4RPF A;  5C0X D;  4USM A;  1HNZ E;  2CG9 A;  4JYA I;  4LF6 I;  3B78 A;  3PRY A;  5DRO A;  2CVE A;  1H7U A;  2BA1 D;  4DR7 E;  1YHC A;  2OI2 A;  1IBM I;  2E1R A;  4X65 E;  4AID A;  4OX9 I;  2V2Q A;  3HJC A;  4IZK B;  4J3D A;  5LMU E;  1XNR I;  1Y5Y A;  4LPF A;  1HR0 I;  1NHH A;  1PIE A; 
#chains in the Genus database with same CATH homology
 4GQU A;  4MU1 A;  4QNJ A;  4MU3 A;  5EKW A;  5ELW A;  5DNX A;  4LPF A;  4LOM A;  2F1D A;  2AE8 A;  5DNL A;  4QNK A;  1RHY A;  4MU0 A;  5EL9 A;  4MU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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