2AE8A

Crystal structure of imidazoleglycerol-phosphate dehydratase from staphylococcus aureus subsp. aureus n315
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
179
structure length
171
Chain Sequence
MIYQKQRTQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Imidazoleglycerol-phosphate Dehydratase from Staphylococcus aureus subsp. aureus N315
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase
total genus 49
structure length 171
sequence length 179
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A01
2F1DA 4QNJA 5EKWA 5EL9A 2AE8A 1RHYA 4LPFA 4GQUA 4MU4A 4QNKA 4LOMA 4MU1A 4MU3A 5DNXA 5DNLA 5ELWA 4MU0A
chains in the Genus database with same CATH superfamily
2O1TA 1XHKA 4IZKA 4LFAI 1WUUA 1B62A 5K36A 2UXBI 4X66I 4BA2B 1ZM3A 1XNRI 4I3HA 1H74A 4JI2E 4LCHA 2UUBI 5IT9Q 4LFBI 4DR2I 4DR6I 1USUA 5DNLA 4R1FA 2NPFA 2WNRB 3P3EA 4IS9A 2JE6B 1R6LA 2PO1A 4B3MI 4YY3E 1Z5AA 2F1DA 5EKWA 3K1JA 3PS2A 2Z5BA 4JI8E 4FW5A 1XMQE 4GKJE 4DV4E 1H73A 5IWAI 2VQFI 2HKEA 3Q6NA 2V34A 1MG7A 1Z59A 1NZ0A 3PS3A 4LF6I 1Z0BA 2C37B 2Z5CB 3J7AG 1N32I 4GKJI 1Y60A 2C39B 1EA6A 1VI7A 3T1YE 1BKNA 4X64I 2VF3A 4LFCE 1XMOI 3QT5A 1E3PA 4LPFA 4OX9I 4JI7I 4DV0E 2IERA 3WU3A 1FNMA 3PYFA 4P7AA 4RPFA 2BR2B 4DR6E 2X7IA 2O1VA 5FWKA 2V2QA 4AIMA 3CDJA 1UEKA 3J81C 4ED4A 4K0KI 1N34E 4MU4A 4X66E 3HKMA 5K36C 4JI7E 4Z7CA 1FI4A 1XXEA 1FKAE 4DXLA 3GMEA 4FW3A 3ZKBA 2HFSA 4IFDB 4OO1C 1Z0GA 5JEAB 2J65A 3B8HA 4LF7I 1H7UA 4LF9E 4Z7YA 2BA0D 1XNQI 4JI1I 3LTOA 4USMA 1HNWE 4GKKE 1PKPA 3QT6A 3JAMC 2BR2A 2PNMA 4DR7I 3GONA 2NN6D 4X65E 4DR4I 3OTOE 2E5LE 1ZM2A 2BV3A 2UUBE 4B3RE 4YHHE 3L7ZB 4DR5E 4PRXA 4MU0A 2Z5BB 2GO3A 3DD6A 2V8PA 2Q2EB 1XMQI 4JI8I 3P06A 3QT8A 4JI6I 5GMEA 1RR9A 4OX9E 5K36D 1N33I 1ZXNA 4GQUA 4IZJA 4OKGA 4XTJA 1PIEA 1K47A 1XNQE 4KHPE 1FWKA 3V2UC 4PU9A 2O1UA 4DUZI 2R42A 4JG4A 2JT2A 4MU3A 2DEIA 3HULA 5BR8E 2PO0A 4NXNE 2VESA 2ZM6I 1N34I 5A2QQ 3Q6MA 2C39A 4HACB 3GCMA 2J7KA 2UU9E 1H72C 2AJ4A 5JEAF 1IBME 1IBMI 4AQYE 2HK3A 1YH8A 3J80Q 4FWDA 4LFAE 5JEAC 5DROA 4IFDA 1HNZE 4OO1B 1S16A 4B3SE 5LMUI 1NHIA 3B78A 2WP8A 3J81Q 4DPTA 3P3GA 4LF6E 4LF4I 1Y5YA 1Z0TA 1Z0CA 4WUCA 4MU1A 4MYTA 1IBLE 5A2QC 2UXDI 4YY3I 1UDOA 2PNZA 4DV7E 2NN6F 2HK2A 2CZ9A 3WU5A 4OO1E 2Z5CA 4KHPI 2C38B 3ZKDA 1YHCA 4FWHA 1FJGI 1Y6ZA 1R6MA 2JEBA 4X62E 5LMNE 3CDIA 4JV5I 1VISA 2CGEA 1EI1A 3CWVA 5K36F 2GQ0A 4MYUA 4DPUA 5L3JA 2UUCE 2OI2A 1J5EE 1J5EI 2DEJA 1KTVA 3K85A 3PYDA 4P52A 1KKHA 5GMDA 3OTOI 2PO0B 1N36I 1ZM9A 4FW6A 2GO4A 1Z0WA 4KQVA 2F4VE 4DV1I 2PNLA 3ZZTA 1HR0E 4GKKI 3P76A 1FWLA 4MDTA 4X64E 2C37A 5C0XD 4LF5E 1PVGA 1N32E 4LF8E 1D6TA 4LF9I 4HY1A 5DRRA 4IZKB 3PYEA 2X36A 4DV6E 5DRQA 1HK7A 4WUBA 4IFDE 4LF5I 5JEAD 4B3ME 3U1YA 1KVKA 3LPSA 1N0UA 4HYMA 5FLXQ 2JEAA 3V5RA 4URLA 4LF4E 4UTGA 4LCFA 2LJPA 1IBKI 4JI3I 4JI4I 5C0XB 2HHHI 4UT4A 4BA2A 3KRNA 4OO1D 2IESA 1A6FA 4JV5E 3JAMQ 4IFDD 4DR3E 4NXMI 2PO2A 5DNXA 2EFGA 2WNRA 4FN5A 2WP8B 4HACA 5JEAE 4JI5E 1B63A 1RREA 4IZJD 4PRVA 4JYAI 1OJ4A 4BA1A 2VQEI 4USKA 1UDSA 2A2CA 4QNJA 3WU4A 4DR4E 3M85D 1UDNA 2BM0A 1Y4SA 5K36B 2UUAI 1KIJA 1OYSA 4DV2E 4WUDA 2HKJA 4NXME 2PNZB 4LCGA 4JI0E 2NN6C 4DV1E 2F4VI 1MU5A 3WU6A 1E3HA 4FW7A 1P42A 4DUYI 2UXCI 2NN6E 4ISAA 4JI2I 4DPWA 4NBQA 4LFBE 4DV5I 1Z0EA 1NHJA 4LOMA 3P3CA 4X65I 2BA0G 5BR8I 4DUYE 4DPYA 1Z0VA 2A2DA 1N0VC 4HXZA 1FJGE 4AIDA 5C0XF 4DR5I 3L7ZA 3LNUA 4FW9A 2V2VA 4K0KE 1H7SA 4JI1E 2E5LI 3H1CA 4DR1E 2JEBB 2BA1G 1DARA 3ZZ0A 1IBKE 1Z5BA 3M7NG 3M85G 1I94E 4DV3I 5EL9A 1HR0I 2AE8A 2UXDE 4JI6E 4DV7I 1HNXE 2UUAE 3J80C 4U3BA 4M1KA 1ZM4A 2O1WA 4B3TE 3M6AA 5C0XA 1MX0A 2HHHE 4JI5I 4JYAE 5LMUE 2UUCI 1UDQA 4DU8A 3T1HE 3GLLA 3F0NA 4FW4A 4IZJB 3M7ND 4DR7E 2UXCE 3B82A 4B3SI 4DR3I 5JEAA 1N33E 4IFDC 2BA1D 4DV0I 4OZEA 4X62I 2PO1B 4AQYI 4IFDF 3U1KA 1S4EA 3H4LA 3T1HI 2E1RA 3UHMA 4OO1A 4NXNI 4OO1F 1RHYA 4DU7A 4B3TI 1QZRA 1ZXMA 3PS1A 2IOPA 2GS8A 3PYGA 2O3ZA 2BM1A 2C38A 4DV3E 4ZVIA 1IBLI 2JE6A 4DUZE 4DPXA 1Z5CA 1U2RA 3PRYA 1I94I 5FLXC 4DV6I 4QNKA 5LL6R 5IWAE 2VQFE 5C0XE 4DR1I 4DR2E 4JI3E 4JI4E 2V2ZA 1OYRA 3J7AM 5K36E 2NN6B 4N3OA 2HFUA 5DRPA 3D4JA 4LFCI 1N36E 3T1YI 3K17A 1ELOA 4MQYA 4DV5E 4U3DA 4EMDA 4YHHI 4B3RI 3Q1QA 5IT9C 2UXBE 3ZZUA 2ZM6E 4LF8I 2ZITA 4DV4I 4AM3A 2ZBKB 2XEXA 1HNXI 1NHHA 2PO2B 1OYPA 1HNZI 5C0XC 5LMNI 1USVA 3QT7A 1XMOE 3HJCA 5ELWA 4DV2I 4FWGA 4JI0I 3ZM7A 2UU9I 1HNWI 4BA1B 2Z5EA 3NZKA 2R3VA 2NN6A 3B4TA 2VQEE 2IOQA 1XNRE 1Y4UA 4LF7E 2CG9A 2CVEA 4J3DA 2WW4A 2JEAB
chains in the Genus database with same CATH topology
2F1DA 4QNJA 5EKWA 5EL9A 2AE8A 1RHYA 4LPFA 4GQUA 4MU4A 4QNKA 4LOMA 4MU1A 4MU3A 5DNXA 5DNLA 5ELWA 4MU0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1D A;  4QNJ A;  5EKW A;  5EL9 A;  2AE8 A;  1RHY A;  4LPF A;  4GQU A;  4MU4 A;  4QNK A;  4LOM A;  4MU1 A;  4MU3 A;  5DNX A;  5DNL A;  5ELW A;  4MU0 A; 
#chains in the Genus database with same CATH topology
 2O1T A;  1XHK A;  4IZK A;  4LFA I;  1WUU A;  1B62 A;  5K36 A;  2UXB I;  4X66 I;  4BA2 B;  1ZM3 A;  1XNR I;  4I3H A;  1H74 A;  4JI2 E;  4LCH A;  2UUB I;  5IT9 Q;  4LFB I;  4DR2 I;  4DR6 I;  1USU A;  5DNL A;  4R1F A;  2NPF A;  2WNR B;  3P3E A;  4IS9 A;  2JE6 B;  1R6L A;  2PO1 A;  4B3M I;  4YY3 E;  1Z5A A;  2F1D A;  5EKW A;  3K1J A;  3PS2 A;  2Z5B A;  4JI8 E;  4FW5 A;  1XMQ E;  4GKJ E;  4DV4 E;  1H73 A;  5IWA I;  2VQF I;  2HKE A;  3Q6N A;  2V34 A;  1MG7 A;  1Z59 A;  1NZ0 A;  3PS3 A;  4LF6 I;  1Z0B A;  2C37 B;  2Z5C B;  3J7A G;  1N32 I;  4GKJ I;  1Y60 A;  2C39 B;  1EA6 A;  1VI7 A;  3T1Y E;  1BKN A;  4X64 I;  2VF3 A;  4LFC E;  1XMO I;  3QT5 A;  1E3P A;  4LPF A;  4OX9 I;  4JI7 I;  4DV0 E;  2IER A;  3WU3 A;  1FNM A;  3PYF A;  4P7A A;  4RPF A;  2BR2 B;  4DR6 E;  2X7I A;  2O1V A;  5FWK A;  2V2Q A;  4AIM A;  3CDJ A;  1UEK A;  3J81 C;  4ED4 A;  4K0K I;  1N34 E;  4MU4 A;  4X66 E;  3HKM A;  5K36 C;  4JI7 E;  4Z7C A;  1FI4 A;  1XXE A;  1FKA E;  4DXL A;  3GME A;  4FW3 A;  3ZKB A;  2HFS A;  4IFD B;  4OO1 C;  1Z0G A;  5JEA B;  2J65 A;  3B8H A;  4LF7 I;  1H7U A;  4LF9 E;  4Z7Y A;  2BA0 D;  1XNQ I;  4JI1 I;  3LTO A;  4USM A;  1HNW E;  4GKK E;  1PKP A;  3QT6 A;  3JAM C;  2BR2 A;  2PNM A;  4DR7 I;  3GON A;  2NN6 D;  4X65 E;  4DR4 I;  3OTO E;  2E5L E;  1ZM2 A;  2BV3 A;  2UUB E;  4B3R E;  4YHH E;  3L7Z B;  4DR5 E;  4PRX A;  4MU0 A;  2Z5B B;  2GO3 A;  3DD6 A;  2V8P A;  2Q2E B;  1XMQ I;  4JI8 I;  3P06 A;  3QT8 A;  4JI6 I;  5GME A;  1RR9 A;  4OX9 E;  5K36 D;  1N33 I;  1ZXN A;  4GQU A;  4IZJ A;  4OKG A;  4XTJ A;  1PIE A;  1K47 A;  1XNQ E;  4KHP E;  1FWK A;  3V2U C;  4PU9 A;  2O1U A;  4DUZ I;  2R42 A;  4JG4 A;  2JT2 A;  4MU3 A;  2DEI A;  3HUL A;  5BR8 E;  2PO0 A;  4NXN E;  2VES A;  2ZM6 I;  1N34 I;  5A2Q Q;  3Q6M A;  2C39 A;  4HAC B;  3GCM A;  2J7K A;  2UU9 E;  1H72 C;  2AJ4 A;  5JEA F;  1IBM E;  1IBM I;  4AQY E;  2HK3 A;  1YH8 A;  3J80 Q;  4FWD A;  4LFA E;  5JEA C;  5DRO A;  4IFD A;  1HNZ E;  4OO1 B;  1S16 A;  4B3S E;  5LMU I;  1NHI A;  3B78 A;  2WP8 A;  3J81 Q;  4DPT A;  3P3G A;  4LF6 E;  4LF4 I;  1Y5Y A;  1Z0T A;  1Z0C A;  4WUC A;  4MU1 A;  4MYT A;  1IBL E;  5A2Q C;  2UXD I;  4YY3 I;  1UDO A;  2PNZ A;  4DV7 E;  2NN6 F;  2HK2 A;  2CZ9 A;  3WU5 A;  4OO1 E;  2Z5C A;  4KHP I;  2C38 B;  3ZKD A;  1YHC A;  4FWH A;  1FJG I;  1Y6Z A;  1R6M A;  2JEB A;  4X62 E;  5LMN E;  3CDI A;  4JV5 I;  1VIS A;  2CGE A;  1EI1 A;  3CWV A;  5K36 F;  2GQ0 A;  4MYU A;  4DPU A;  5L3J A;  2UUC E;  2OI2 A;  1J5E E;  1J5E I;  2DEJ A;  1KTV A;  3K85 A;  3PYD A;  4P52 A;  1KKH A;  5GMD A;  3OTO I;  2PO0 B;  1N36 I;  1ZM9 A;  4FW6 A;  2GO4 A;  1Z0W A;  4KQV A;  2F4V E;  4DV1 I;  2PNL A;  3ZZT A;  1HR0 E;  4GKK I;  3P76 A;  1FWL A;  4MDT A;  4X64 E;  2C37 A;  5C0X D;  4LF5 E;  1PVG A;  1N32 E;  4LF8 E;  1D6T A;  4LF9 I;  4HY1 A;  5DRR A;  4IZK B;  3PYE A;  2X36 A;  4DV6 E;  5DRQ A;  1HK7 A;  4WUB A;  4IFD E;  4LF5 I;  5JEA D;  4B3M E;  3U1Y A;  1KVK A;  3LPS A;  1N0U A;  4HYM A;  5FLX Q;  2JEA A;  3V5R A;  4URL A;  4LF4 E;  4UTG A;  4LCF A;  2LJP A;  1IBK I;  4JI3 I;  4JI4 I;  5C0X B;  2HHH I;  4UT4 A;  4BA2 A;  3KRN A;  4OO1 D;  2IES A;  1A6F A;  4JV5 E;  3JAM Q;  4IFD D;  4DR3 E;  4NXM I;  2PO2 A;  5DNX A;  2EFG A;  2WNR A;  4FN5 A;  2WP8 B;  4HAC A;  5JEA E;  4JI5 E;  1B63 A;  1RRE A;  4IZJ D;  4PRV A;  4JYA I;  1OJ4 A;  4BA1 A;  2VQE I;  4USK A;  1UDS A;  2A2C A;  4QNJ A;  3WU4 A;  4DR4 E;  3M85 D;  1UDN A;  2BM0 A;  1Y4S A;  5K36 B;  2UUA I;  1KIJ A;  1OYS A;  4DV2 E;  4WUD A;  2HKJ A;  4NXM E;  2PNZ B;  4LCG A;  4JI0 E;  2NN6 C;  4DV1 E;  2F4V I;  1MU5 A;  3WU6 A;  1E3H A;  4FW7 A;  1P42 A;  4DUY I;  2UXC I;  2NN6 E;  4ISA A;  4JI2 I;  4DPW A;  4NBQ A;  4LFB E;  4DV5 I;  1Z0E A;  1NHJ A;  4LOM A;  3P3C A;  4X65 I;  2BA0 G;  5BR8 I;  4DUY E;  4DPY A;  1Z0V A;  2A2D A;  1N0V C;  4HXZ A;  1FJG E;  4AID A;  5C0X F;  4DR5 I;  3L7Z A;  3LNU A;  4FW9 A;  2V2V A;  4K0K E;  1H7S A;  4JI1 E;  2E5L I;  3H1C A;  4DR1 E;  2JEB B;  2BA1 G;  1DAR A;  3ZZ0 A;  1IBK E;  1Z5B A;  3M7N G;  3M85 G;  1I94 E;  4DV3 I;  5EL9 A;  1HR0 I;  2AE8 A;  2UXD E;  4JI6 E;  4DV7 I;  1HNX E;  2UUA E;  3J80 C;  4U3B A;  4M1K A;  1ZM4 A;  2O1W A;  4B3T E;  3M6A A;  5C0X A;  1MX0 A;  2HHH E;  4JI5 I;  4JYA E;  5LMU E;  2UUC I;  1UDQ A;  4DU8 A;  3T1H E;  3GLL A;  3F0N A;  4FW4 A;  4IZJ B;  3M7N D;  4DR7 E;  2UXC E;  3B82 A;  4B3S I;  4DR3 I;  5JEA A;  1N33 E;  4IFD C;  2BA1 D;  4DV0 I;  4OZE A;  4X62 I;  2PO1 B;  4AQY I;  4IFD F;  3U1K A;  1S4E A;  3H4L A;  3T1H I;  2E1R A;  3UHM A;  4OO1 A;  4NXN I;  4OO1 F;  1RHY A;  4DU7 A;  4B3T I;  1QZR A;  1ZXM A;  3PS1 A;  2IOP A;  2GS8 A;  3PYG A;  2O3Z A;  2BM1 A;  2C38 A;  4DV3 E;  4ZVI A;  1IBL I;  2JE6 A;  4DUZ E;  4DPX A;  1Z5C A;  1U2R A;  3PRY A;  1I94 I;  5FLX C;  4DV6 I;  4QNK A;  5LL6 R;  5IWA E;  2VQF E;  5C0X E;  4DR1 I;  4DR2 E;  4JI3 E;  4JI4 E;  2V2Z A;  1OYR A;  3J7A M;  5K36 E;  2NN6 B;  4N3O A;  2HFU A;  5DRP A;  3D4J A;  4LFC I;  1N36 E;  3T1Y I;  3K17 A;  1ELO A;  4MQY A;  4DV5 E;  4U3D A;  4EMD A;  4YHH I;  4B3R I;  3Q1Q A;  5IT9 C;  2UXB E;  3ZZU A;  2ZM6 E;  4LF8 I;  2ZIT A;  4DV4 I;  4AM3 A;  2ZBK B;  2XEX A;  1HNX I;  1NHH A;  2PO2 B;  1OYP A;  1HNZ I;  5C0X C;  5LMN I;  1USV A;  3QT7 A;  1XMO E;  3HJC A;  5ELW A;  4DV2 I;  4FWG A;  4JI0 I;  3ZM7 A;  2UU9 I;  1HNW I;  4BA1 B;  2Z5E A;  3NZK A;  2R3V A;  2NN6 A;  3B4T A;  2VQE E;  2IOQ A;  1XNR E;  1Y4U A;  4LF7 E;  2CG9 A;  2CVE A;  4J3D A;  2WW4 A;  2JEA B; 
#chains in the Genus database with same CATH homology
 2F1D A;  4QNJ A;  5EKW A;  5EL9 A;  2AE8 A;  1RHY A;  4LPF A;  4GQU A;  4MU4 A;  4QNK A;  4LOM A;  4MU1 A;  4MU3 A;  5DNX A;  5DNL A;  5ELW A;  4MU0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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