2AE8A

Crystal structure of imidazoleglycerol-phosphate dehydratase from staphylococcus aureus subsp. aureus n315
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
179
structure length
171
Chain Sequence
MIYQKQRTQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Crystal Structure of Imidazoleglycerol-phosphate Dehydratase from Staphylococcus aureus subsp. aureus N315
rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 49
structure length 171
sequence length 179
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A01
4MU4A 4LOMA 2AE8A 5DNXA 5EL9A 4MU3A 4MU0A 4MU1A 1RHYA 4LPFA 4GQUA 2F1DA 4QNKA 4QNJA 5DNLA 5ELWA 5EKWA
chains in the Genus database with same CATH superfamily
4LF9E 4JI7E 4LFAI 4JI1I 1HR0E 4UTGA 1H7SA 4QNJA 4Z7YA 4QNKA 2C38A 2C37A 1XMOE 2Z5EA 4DXLA 1FI4A 1N36I 4WUCA 4DV1I 4ED4A 2JE6B 1FWKA 4AIDA 4LF6E 4FN5A 3Q1QA 3JAMQ 4DV7I 2UUBI 1ELOA 2ZITA 1Z0GA 3PS2A 2C39A 2VQFI 3J80C 3K17A 4LF8E 1Z0VA 2NN6B 3J7AG 2Q2EB 2X7IA 1NHHA 5BR8E 4DV4I 4X65I 4MQYA 2PNLA 2AE8A 4B3RE 1XMQI 2PO0A 2IOPA 2CG9A 4EMDA 4FW5A 3WU6A 4I3HA 4FW4A 3J81Q 4DV5E 2PO1B 3H1CA 4KHPI 1N32E 3CDJA 4X62E 4JYAI 4X64I 4AQYI 4BA1A 4LFBE 4P52A 4NXNE 2DEJA 4MDTA 4DR6E 1YH8A 4DR3I 4B3SE 4DUYI 3PYGA 4IFDE 1XNQE 2F4VE 1UDNA 3WU4A 2R42A 3LTOA 1N34E 1XHKA 1HNXE 3P06A 4Z7CA 3NZKA 2PNZB 2PO1A 3WU5A 4JI8E 3PYEA 1VISA 2UUCE 2BA0G 2PO2B 5IWAI 4LF5E 5JEAD 4LF4E 3T1YI 4DV2I 2DEIA 3L7ZA 5A2QC 2E5LI 3HKMA 4LF7E 1Y5YA 3D4JA 4FW6A 4IFDB 4U3DA 4K0KI 2O3ZA 3LPSA 4JI0I 1NHJA 4GKJI 4IFDC 2PNZA 1FWLA 5K36E 4B3TI 1KTVA 3ZKDA 3B8HA 2UUAI 1ZM3A 1U2RA 1Y6ZA 1MX0A 2C38B 2HK3A 4DPWA 5EKWA 1DARA 5LMNI 5DNXA 4IZJA 4PRVA 4IFDA 2NN6D 4FW3A 1H74A 1UDSA 4IFDF 2O1TA 4DV3I 4JI2I 4DR4E 2C39B 1OYSA 2HKJA 4DR1E 4USKA 2CVEA 3P3EA 5K36B 3Q6MA 2X36A 2R3VA 3ZZUA 3J7AM 3GLLA 1FJGE 5GMDA 4LF6I 5K36C 2PO0B 3F0NA 3ZM7A 2BA0D 3ZZ0A 1I94I 4YY3I 1N33E 3K85A 4MU0A 3JAMC 4YHHE 3P3CA 2WNRA 5LMUE 4R1FA 3V5RA 4JI4I 4LCHA 4DR7I 4BA1B 4MU3A 3KRNA 1KKHA 4LFAE 4JI1E 5K36A 2BA1D 2UXBI 1OYPA 1B63A 4DUZI 1KVKA 5K36F 1Z0CA 1Z0BA 4DR5I 3B78A 4DV5I 2WW4A 4X66I 1Z0WA 2V34A 5C0XD 4OO1D 3V2UC 1R6MA 1N36E 1HNWI 2AJ4A 3J81C 2V2VA 4IZKB 4MU4A 4DV7E 2UUBE 3J80Q 2GS8A 4PU9A 2BM0A 3OTOI 3GCMA 2JEAB 1ZM4A 4LCFA 4HYMA 2VQFE 4DR6I 4HACA 1HK7A 3L7ZB 4OKGA 4DV6I 2EFGA 2Z5CA 2WP8B 3U1KA 2VQEI 1IBLI 2BV3A 3ZZTA 2UXDI 1HNXI 1E3PA 3QT5A 2ZM6I 2V2ZA 1IBMI 5DROA 1OJ4A 1XMQE 2HHHI 2PNMA 4JV5E 1P42A 3T1HE 2UUCI 1PKPA 4LF5I 1N0VC 4IZKA 4DPXA 1RR9A 4NXME 4KHPE 4USMA 4P7AA 4X64E 2JEAA 4AQYE 3QT8A 2UXCI 2JT2A 4MYUA 4FWGA 2WP8A 1USUA 1Z5AA 1IBKE 1Y4UA 4IZJB 4DR3E 4DR2I 4DUYE 2IOQA 4LFCE 4JG4A 1HNZE 2LJPA 2BA1G 4JI3E 2JEBA 4U3BA 2UU9E 4GKKI 4DV0I 2O1UA 4DPYA 1XNRI 1EA6A 4B3MI 2BR2A 2XEXA 5A2QQ 1NHIA 4XTJA 2A2CA 3T1YE 1Z0TA 4DV2E 4NBQA 5C0XC 4OO1C 2E5LE 4OX9I 2J7KA 4KQVA 1ZXNA 5JEAE 5FLXQ 2J65A 4JI5I 4K0KE 4BA2B 4LF9I 2WNRB 4JI7I 4WUDA 1HR0I 4WUBA 3PS1A 4ISAA 3CDIA 4JI0E 1KIJA 4GKJE 4JI6E 3M85D 5IT9Q 5FWKA 4B3TE 5LL6R 1XMOI 1J5EE 2UUAE 1Z0EA 4J3DA 1BKNA 4M1KA 2A2DA 4HY1A 4BA2A 1VI7A 2NPFA 4LF8I 2O1WA 4DV3E 4JI2E 3PS3A 2O1VA 5JEAC 3HJCA 1ZXMA 2HK2A 3WU3A 2NN6E 1PIEA 2Z5BA 4HACB 5BR8I 1Y60A 1Y4SA 2CGEA 2VESA 4MYTA 1S4EA 1R6LA 4HXZA 2Z5CB 4B3RI 3HULA 1WUUA 1ZM2A 5JEAA 5EL9A 1K47A 4DU7A 1N32I 4DV1E 5L3JA 4X62I 4FWHA 1I94E 4YY3E 5JEAF 2V8PA 1Z5CA 2IESA 1QZRA 2VF3A 4IZJD 4LFBI 4IFDD 3U1YA 4NXNI 4JI4E 3UHMA 4DR7E 4PRXA 2OI2A 4B3SI 3QT6A 3K1JA 1XNQI 1PVGA 2F4VI 2IERA 3GMEA 1YHCA 1N34I 2UXBE 4DUZE 4JV5I 2NN6C 4DV4E 3T1HI 3M85G 4X65E 2JE6A 1B62A 3M7ND 2GQ0A 5ELWA 4DR5E 1FKAE 4LOMA 2GO3A 2ZBKB 4X66E 2JEBB 4GQUA 4JI8I 3P3GA 4NXMI 3QT7A 1HNWE 1FNMA 4LF4I 3B82A 4MU1A 4UT4A 4LPFA 5C0XE 1H72C 3ZKBA 2BR2B 4OO1E 2HFSA 4FWDA 3OTOE 4JYAE 1MU5A 2NN6A 5DRPA 1IBKI 4LF7I 1RHYA 1RREA 3CWVA 4OZEA 4LFCI 4DV6E 2NN6F 1HNZI 1OYRA 3LNUA 2VQEE 4JI3I 1IBLE 2UXDE 5K36D 4AIMA 4FW9A 2ZM6E 2UU9I 3H4LA 2E1RA 1N0UA 1IBME 2GO4A 2HHHE 4IS9A 1H7UA 1UEKA 3M6AA 5C0XB 4DPUA 4OO1B 1H73A 3PRYA 1ZM9A 3DD6A 1USVA 4URLA 5IWAE 5DNLA 2UXCE 2CZ9A 1MG7A 1UDQA 3P76A 4ZVIA 3GONA 5FLXC 4DR2E 4DR4I 3B4TA 4DR1I 4AM3A 2BM1A 4JI6I 2V2QA 1D6TA 4DU8A 1J5EI 2PO2A 4GKKE 4DV0E 3M7NG 1Z59A 4FW7A 2Z5BB 4RPFA 5C0XA 5IT9C 4N3OA 4OO1A 3PYFA 1XNRE 2C37B 4B3ME 1FJGI 4LCGA 1UDOA 5DRQA 5C0XF 5DRRA 3Q6NA 4OO1F 1EI1A 1NZ0A 1E3HA 1N33I 4YHHI 5LMUI 1A6FA 5GMEA 5JEAB 3PYDA 2HFUA 4DPTA 5LMNE 4OX9E 1XXEA 1S16A 4JI5E 2F1DA 1Z5BA 2HKEA
chains in the Genus database with same CATH topology
4MU4A 4LOMA 2AE8A 5DNXA 5EL9A 4MU3A 4MU0A 4MU1A 1RHYA 4LPFA 4GQUA 2F1DA 4QNKA 4QNJA 5DNLA 5ELWA 5EKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU4 A;  4LOM A;  2AE8 A;  5DNX A;  5EL9 A;  4MU3 A;  4MU0 A;  4MU1 A;  1RHY A;  4LPF A;  4GQU A;  2F1D A;  4QNK A;  4QNJ A;  5DNL A;  5ELW A;  5EKW A; 
#chains in the Genus database with same CATH topology
 4LF9 E;  4JI7 E;  4LFA I;  4JI1 I;  1HR0 E;  4UTG A;  1H7S A;  4QNJ A;  4Z7Y A;  4QNK A;  2C38 A;  2C37 A;  1XMO E;  2Z5E A;  4DXL A;  1FI4 A;  1N36 I;  4WUC A;  4DV1 I;  4ED4 A;  2JE6 B;  1FWK A;  4AID A;  4LF6 E;  4FN5 A;  3Q1Q A;  3JAM Q;  4DV7 I;  2UUB I;  1ELO A;  2ZIT A;  1Z0G A;  3PS2 A;  2C39 A;  2VQF I;  3J80 C;  3K17 A;  4LF8 E;  1Z0V A;  2NN6 B;  3J7A G;  2Q2E B;  2X7I A;  1NHH A;  5BR8 E;  4DV4 I;  4X65 I;  4MQY A;  2PNL A;  2AE8 A;  4B3R E;  1XMQ I;  2PO0 A;  2IOP A;  2CG9 A;  4EMD A;  4FW5 A;  3WU6 A;  4I3H A;  4FW4 A;  3J81 Q;  4DV5 E;  2PO1 B;  3H1C A;  4KHP I;  1N32 E;  3CDJ A;  4X62 E;  4JYA I;  4X64 I;  4AQY I;  4BA1 A;  4LFB E;  4P52 A;  4NXN E;  2DEJ A;  4MDT A;  4DR6 E;  1YH8 A;  4DR3 I;  4B3S E;  4DUY I;  3PYG A;  4IFD E;  1XNQ E;  2F4V E;  1UDN A;  3WU4 A;  2R42 A;  3LTO A;  1N34 E;  1XHK A;  1HNX E;  3P06 A;  4Z7C A;  3NZK A;  2PNZ B;  2PO1 A;  3WU5 A;  4JI8 E;  3PYE A;  1VIS A;  2UUC E;  2BA0 G;  2PO2 B;  5IWA I;  4LF5 E;  5JEA D;  4LF4 E;  3T1Y I;  4DV2 I;  2DEI A;  3L7Z A;  5A2Q C;  2E5L I;  3HKM A;  4LF7 E;  1Y5Y A;  3D4J A;  4FW6 A;  4IFD B;  4U3D A;  4K0K I;  2O3Z A;  3LPS A;  4JI0 I;  1NHJ A;  4GKJ I;  4IFD C;  2PNZ A;  1FWL A;  5K36 E;  4B3T I;  1KTV A;  3ZKD A;  3B8H A;  2UUA I;  1ZM3 A;  1U2R A;  1Y6Z A;  1MX0 A;  2C38 B;  2HK3 A;  4DPW A;  5EKW A;  1DAR A;  5LMN I;  5DNX A;  4IZJ A;  4PRV A;  4IFD A;  2NN6 D;  4FW3 A;  1H74 A;  1UDS A;  4IFD F;  2O1T A;  4DV3 I;  4JI2 I;  4DR4 E;  2C39 B;  1OYS A;  2HKJ A;  4DR1 E;  4USK A;  2CVE A;  3P3E A;  5K36 B;  3Q6M A;  2X36 A;  2R3V A;  3ZZU A;  3J7A M;  3GLL A;  1FJG E;  5GMD A;  4LF6 I;  5K36 C;  2PO0 B;  3F0N A;  3ZM7 A;  2BA0 D;  3ZZ0 A;  1I94 I;  4YY3 I;  1N33 E;  3K85 A;  4MU0 A;  3JAM C;  4YHH E;  3P3C A;  2WNR A;  5LMU E;  4R1F A;  3V5R A;  4JI4 I;  4LCH A;  4DR7 I;  4BA1 B;  4MU3 A;  3KRN A;  1KKH A;  4LFA E;  4JI1 E;  5K36 A;  2BA1 D;  2UXB I;  1OYP A;  1B63 A;  4DUZ I;  1KVK A;  5K36 F;  1Z0C A;  1Z0B A;  4DR5 I;  3B78 A;  4DV5 I;  2WW4 A;  4X66 I;  1Z0W A;  2V34 A;  5C0X D;  4OO1 D;  3V2U C;  1R6M A;  1N36 E;  1HNW I;  2AJ4 A;  3J81 C;  2V2V A;  4IZK B;  4MU4 A;  4DV7 E;  2UUB E;  3J80 Q;  2GS8 A;  4PU9 A;  2BM0 A;  3OTO I;  3GCM A;  2JEA B;  1ZM4 A;  4LCF A;  4HYM A;  2VQF E;  4DR6 I;  4HAC A;  1HK7 A;  3L7Z B;  4OKG A;  4DV6 I;  2EFG A;  2Z5C A;  2WP8 B;  3U1K A;  2VQE I;  1IBL I;  2BV3 A;  3ZZT A;  2UXD I;  1HNX I;  1E3P A;  3QT5 A;  2ZM6 I;  2V2Z A;  1IBM I;  5DRO A;  1OJ4 A;  1XMQ E;  2HHH I;  2PNM A;  4JV5 E;  1P42 A;  3T1H E;  2UUC I;  1PKP A;  4LF5 I;  1N0V C;  4IZK A;  4DPX A;  1RR9 A;  4NXM E;  4KHP E;  4USM A;  4P7A A;  4X64 E;  2JEA A;  4AQY E;  3QT8 A;  2UXC I;  2JT2 A;  4MYU A;  4FWG A;  2WP8 A;  1USU A;  1Z5A A;  1IBK E;  1Y4U A;  4IZJ B;  4DR3 E;  4DR2 I;  4DUY E;  2IOQ A;  4LFC E;  4JG4 A;  1HNZ E;  2LJP A;  2BA1 G;  4JI3 E;  2JEB A;  4U3B A;  2UU9 E;  4GKK I;  4DV0 I;  2O1U A;  4DPY A;  1XNR I;  1EA6 A;  4B3M I;  2BR2 A;  2XEX A;  5A2Q Q;  1NHI A;  4XTJ A;  2A2C A;  3T1Y E;  1Z0T A;  4DV2 E;  4NBQ A;  5C0X C;  4OO1 C;  2E5L E;  4OX9 I;  2J7K A;  4KQV A;  1ZXN A;  5JEA E;  5FLX Q;  2J65 A;  4JI5 I;  4K0K E;  4BA2 B;  4LF9 I;  2WNR B;  4JI7 I;  4WUD A;  1HR0 I;  4WUB A;  3PS1 A;  4ISA A;  3CDI A;  4JI0 E;  1KIJ A;  4GKJ E;  4JI6 E;  3M85 D;  5IT9 Q;  5FWK A;  4B3T E;  5LL6 R;  1XMO I;  1J5E E;  2UUA E;  1Z0E A;  4J3D A;  1BKN A;  4M1K A;  2A2D A;  4HY1 A;  4BA2 A;  1VI7 A;  2NPF A;  4LF8 I;  2O1W A;  4DV3 E;  4JI2 E;  3PS3 A;  2O1V A;  5JEA C;  3HJC A;  1ZXM A;  2HK2 A;  3WU3 A;  2NN6 E;  1PIE A;  2Z5B A;  4HAC B;  5BR8 I;  1Y60 A;  1Y4S A;  2CGE A;  2VES A;  4MYT A;  1S4E A;  1R6L A;  4HXZ A;  2Z5C B;  4B3R I;  3HUL A;  1WUU A;  1ZM2 A;  5JEA A;  5EL9 A;  1K47 A;  4DU7 A;  1N32 I;  4DV1 E;  5L3J A;  4X62 I;  4FWH A;  1I94 E;  4YY3 E;  5JEA F;  2V8P A;  1Z5C A;  2IES A;  1QZR A;  2VF3 A;  4IZJ D;  4LFB I;  4IFD D;  3U1Y A;  4NXN I;  4JI4 E;  3UHM A;  4DR7 E;  4PRX A;  2OI2 A;  4B3S I;  3QT6 A;  3K1J A;  1XNQ I;  1PVG A;  2F4V I;  2IER A;  3GME A;  1YHC A;  1N34 I;  2UXB E;  4DUZ E;  4JV5 I;  2NN6 C;  4DV4 E;  3T1H I;  3M85 G;  4X65 E;  2JE6 A;  1B62 A;  3M7N D;  2GQ0 A;  5ELW A;  4DR5 E;  1FKA E;  4LOM A;  2GO3 A;  2ZBK B;  4X66 E;  2JEB B;  4GQU A;  4JI8 I;  3P3G A;  4NXM I;  3QT7 A;  1HNW E;  1FNM A;  4LF4 I;  3B82 A;  4MU1 A;  4UT4 A;  4LPF A;  5C0X E;  1H72 C;  3ZKB A;  2BR2 B;  4OO1 E;  2HFS A;  4FWD A;  3OTO E;  4JYA E;  1MU5 A;  2NN6 A;  5DRP A;  1IBK I;  4LF7 I;  1RHY A;  1RRE A;  3CWV A;  4OZE A;  4LFC I;  4DV6 E;  2NN6 F;  1HNZ I;  1OYR A;  3LNU A;  2VQE E;  4JI3 I;  1IBL E;  2UXD E;  5K36 D;  4AIM A;  4FW9 A;  2ZM6 E;  2UU9 I;  3H4L A;  2E1R A;  1N0U A;  1IBM E;  2GO4 A;  2HHH E;  4IS9 A;  1H7U A;  1UEK A;  3M6A A;  5C0X B;  4DPU A;  4OO1 B;  1H73 A;  3PRY A;  1ZM9 A;  3DD6 A;  1USV A;  4URL A;  5IWA E;  5DNL A;  2UXC E;  2CZ9 A;  1MG7 A;  1UDQ A;  3P76 A;  4ZVI A;  3GON A;  5FLX C;  4DR2 E;  4DR4 I;  3B4T A;  4DR1 I;  4AM3 A;  2BM1 A;  4JI6 I;  2V2Q A;  1D6T A;  4DU8 A;  1J5E I;  2PO2 A;  4GKK E;  4DV0 E;  3M7N G;  1Z59 A;  4FW7 A;  2Z5B B;  4RPF A;  5C0X A;  5IT9 C;  4N3O A;  4OO1 A;  3PYF A;  1XNR E;  2C37 B;  4B3M E;  1FJG I;  4LCG A;  1UDO A;  5DRQ A;  5C0X F;  5DRR A;  3Q6N A;  4OO1 F;  1EI1 A;  1NZ0 A;  1E3H A;  1N33 I;  4YHH I;  5LMU I;  1A6F A;  5GME A;  5JEA B;  3PYD A;  2HFU A;  4DPT A;  5LMN E;  4OX9 E;  1XXE A;  1S16 A;  4JI5 E;  2F1D A;  1Z5B A;  2HKE A; 
#chains in the Genus database with same CATH homology
 4MU4 A;  4LOM A;  2AE8 A;  5DNX A;  5EL9 A;  4MU3 A;  4MU0 A;  4MU1 A;  1RHY A;  4LPF A;  4GQU A;  2F1D A;  4QNK A;  4QNJ A;  5DNL A;  5ELW A;  5EKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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