2AE8A

Crystal structure of imidazoleglycerol-phosphate dehydratase from staphylococcus aureus subsp. aureus n315
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
179
structure length
171
Chain Sequence
MIYQKQRTQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Crystal Structure of Imidazoleglycerol-phosphate Dehydratase from Staphylococcus aureus subsp. aureus N315
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Lyase
total genus 49
structure length 171
sequence length 179
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A01
5EL9A 1RHYA 5DNLA 5DNXA 4QNKA 4GQUA 4MU4A 4MU3A 4LPFA 4QNJA 2F1DA 4MU0A 5EKWA 2AE8A 4LOMA 5ELWA 4MU1A
chains in the Genus database with same CATH superfamily
4Z7CA 3PRYA 3M7ND 2BA1G 1J5EI 2UXCE 4X62I 1FWKA 3PYEA 1ZM2A 4JI3E 4USMA 5FLXQ 4DV2I 2A2CA 4DUZE 2VF3A 1B62A 1XNQI 3F0NA 4URLA 4K0KI 4JG4A 4JI1I 2BV3A 2OI2A 2PNZB 5EL9A 4AIMA 1UEKA 3CDJA 1WUUA 5DRPA 1Y60A 1XMOI 3WU3A 4DUYE 4IZJB 4X64E 5LMUE 4IFDC 3H1CA 4DU7A 1KKHA 4DR3E 2J7KA 3HJCA 4IZKA 1OYPA 3J7AM 4JI4I 2E1RA 1E3HA 3Q6MA 1HNXE 1FNMA 1NHHA 5L3JA 4MU3A 4B3RI 2DEIA 3M85D 2JEBA 4MYUA 4IFDD 3GCMA 4QNJA 1OJ4A 2JE6B 1FJGE 5K36B 2VQEE 2NN6B 2X36A 5K36C 2VESA 2HHHE 2O1VA 1KVKA 4WUBA 3HKMA 2PNMA 2BA0G 4X66E 1HNWI 4JI6I 2JEAA 1Z0TA 4DV5I 2NPFA 4LFBE 3PYGA 1UDQA 2UU9I 4KHPE 1HR0E 1A6FA 4LPFA 4IS9A 4OX9E 3GLLA 1OYSA 1ELOA 5IWAE 4DPUA 4DR1I 2C39B 2HK2A 4FWGA 1IBKI 3GMEA 4HY1A 5IT9Q 3K1JA 3J80Q 5FLXC 1H74A 3ZKBA 1N33E 4FW9A 1N32I 4FW6A 4GKKI 1Z0WA 1PVGA 4LF9E 4JI7E 4JI8E 3Q1QA 3QT6A 4LFCI 4JYAE 5DNXA 4DPTA 2BA1D 4GQUA 1NZ0A 2PNZA 4JV5E 2VQFI 3J81Q 5C0XE 2UUAI 2CZ9A 3L7ZB 4FW5A 4X62E 1J5EE 4DV7I 2V2ZA 4IZJA 5DROA 3LTOA 4OO1B 4LF7I 4DV2E 3QT8A 1XNQE 4AM3A 4R1FA 1PIEA 1RREA 3PYDA 4JI1E 5JEAB 2Z5CB 4DR7I 4DV6I 2NN6E 1FI4A 1YHCA 4B3TI 4LFAI 2F1DA 1IBMI 1XMOE 1R6LA 4NBQA 2O1TA 4OKGA 4AQYI 2JE6A 5K36A 2V8PA 2V34A 2NN6A 4B3MI 3LNUA 4DV3I 4HACB 3LPSA 5DRQA 4JI4E 1N36I 1EI1A 4PU9A 1N34E 2HFSA 4IFDF 4DXLA 4B3RE 2UXDI 1H7UA 3OTOI 1IBLI 3ZZUA 1Z0GA 4JI5I 1Z0EA 1Y5YA 4NXNI 1Y6ZA 4RPFA 2O1WA 3H4LA 2IERA 2BA0D 4BA1B 2ZM6I 5ELWA 5IT9C 2C39A 3J80C 1S4EA 5C0XB 4EMDA 2IOQA 5C0XC 4DPXA 1HNWE 4JI6E 5K36F 4P52A 2GQ0A 4DV5E 4FW4A 2UU9E 1YH8A 3CDIA 1KIJA 4DV4I 2IESA 5LL6R 2PO1B 4JI0I 4IZJD 3ZZ0A 1N0UA 1H73A 3HULA 4DR1E 4FW7A 3J81C 4OO1E 3P3CA 2F4VI 4OZEA 2NN6C 1IBKE 1HK7A 3M7NG 4JI3I 5JEAE 1R6MA 4WUCA 1D6TA 4PRXA 1N32E 4GKKE 2UXBI 4DR5I 4OO1A 1NHJA 2R3VA 3GONA 2PNLA 4X65I 1PKPA 1Y4UA 3PS3A 4LFCE 5K36D 3JAMQ 2Z5CA 2CGEA 3PS1A 4YHHI 2VQFE 1VI7A 2GO3A 3WU6A 4X64I 4DPYA 3ZM7A 3T1YI 2DEJA 4DV7E 4DR2I 1XNRI 1USUA 3Q6NA 4U3BA 2WNRA 1S16A 3U1KA 4LF7E 2V2QA 4HXZA 5A2QQ 4HACA 4M1KA 4DR7E 4DV6E 1NHIA 2JT2A 4J3DA 4B3TE 1UDSA 2WW4A 4LFAE 3M85G 1IBME 3NZKA 4IZKB 2ZITA 4DR4E 4MDTA 4AQYE 4LF6I 2AJ4A 5BR8I 5DNLA 3P06A 4B3ME 1XHKA 4DV3E 4FW3A 1I94I 4BA1A 2XEXA 1MG7A 4B3SI 4OO1C 3P3EA 3QT5A 1Z0BA 4K0KE 2UXDE 5C0XA 4MYTA 3OTOE 4DR6I 2AE8A 5JEAC 1Z59A 4JI5E 1FKAE 2LJPA 4NXNE 2C38B 5LMNI 3T1HI 2PO1A 1Z5BA 2X7IA 4DV1I 4OO1D 1HNZI 1OYRA 2ZM6E 3B4TA 4ISAA 2C37B 3P76A 2Z5BB 1ZM3A 2ZBKB 4FWDA 3WU4A 3V2UC 4NXMI 1N0VC 4MU1A 1Y4SA 2E5LI 4JI8I 4DV0I 3CWVA 4JV5I 3K17A 4DV4E 3B82A 4LF4I 3B8HA 3JAMC 4JI0E 1MX0A 5C0XF 1Z0CA 2F4VE 4P7AA 2PO0B 4DU8A 4JI2I 4LF5I 3QT7A 2UUCI 4USKA 1XMQI 2Q2EB 2WP8B 2UXBE 4LF8I 1UDNA 4DR5E 4LCGA 1Z0VA 5A2QC 1H7SA 4BA2B 4AIDA 4X65E 2NN6F 3M6AA 4MQYA 4ED4A 4I3HA 2UUBI 2HKEA 3D4JA 4FN5A 4YHHE 1USVA 4GKJI 1B63A 4KQVA 4YY3I 4IFDB 3U1YA 4WUDA 2A2DA 2R42A 3T1YE 1ZXNA 2UXCI 4DR2E 1XNRE 1XXEA 1Z5AA 2IOPA 5GMDA 5C0XD 4U3DA 1DARA 2BR2B 3KRNA 1KTVA 3L7ZA 3V5RA 1UDOA 4DUZI 1ZM9A 1N34I 2PO2B 4MU4A 4LOMA 3P3GA 1EA6A 5JEAA 1P42A 2NN6D 5EKWA 2GO4A 4DUYI 2J65A 4QNKA 4LF6E 1ZM4A 2C38A 5LMUI 2UUAE 3B78A 5BR8E 1VISA 4DR3I 3DD6A 1I94E 2V2VA 2HK3A 4B3SE 1RR9A 2C37A 3PYFA 2Z5BA 2EFGA 3UHMA 1FWLA 1HNXI 4LCFA 4HYMA 4DR6E 1QZRA 1RHYA 2GS8A 4LCHA 1ZXMA 4ZVIA 4OO1F 3ZZTA 5LMNE 1FJGI 3T1HE 2VQEI 4UT4A 4DV1E 1HNZE 2BM0A 5JEAF 1E3PA 2HHHI 3PS2A 5DRRA 2CG9A 1H72C 2PO0A 4DPWA 4NXME 4MU0A 3WU5A 4X66I 2JEBB 1N36E 2E5LE 4DV0E 2WP8A 1U2RA 4IFDE 1IBLE 4LFBI 4LF4E 4BA2A 4KHPI 4PRVA 4UTGA 1HR0I 4OX9I 3J7AG 2HKJA 1MU5A 2Z5EA 5IWAI 5FWKA 2CVEA 4JI2E 4LF5E 4IFDA 3ZKDA 4N3OA 2UUCE 4FWHA 4XTJA 2JEAB 1Z5CA 1XMQE 2O1UA 4Z7YA 4LF8E 5JEAD 1N33I 2BR2A 4LF9I 3K85A 1BKNA 4JI7I 2O3ZA 5K36E 2BM1A 2UUBE 2PO2A 5GMEA 4JYAI 2HFUA 4GKJE 4YY3E 1K47A 2WNRB 4DR4I
chains in the Genus database with same CATH topology
5EL9A 1RHYA 5DNLA 5DNXA 4QNKA 4GQUA 4MU4A 4MU3A 4LPFA 4QNJA 2F1DA 4MU0A 5EKWA 2AE8A 4LOMA 5ELWA 4MU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EL9 A;  1RHY A;  5DNL A;  5DNX A;  4QNK A;  4GQU A;  4MU4 A;  4MU3 A;  4LPF A;  4QNJ A;  2F1D A;  4MU0 A;  5EKW A;  2AE8 A;  4LOM A;  5ELW A;  4MU1 A; 
#chains in the Genus database with same CATH topology
 4Z7C A;  3PRY A;  3M7N D;  2BA1 G;  1J5E I;  2UXC E;  4X62 I;  1FWK A;  3PYE A;  1ZM2 A;  4JI3 E;  4USM A;  5FLX Q;  4DV2 I;  2A2C A;  4DUZ E;  2VF3 A;  1B62 A;  1XNQ I;  3F0N A;  4URL A;  4K0K I;  4JG4 A;  4JI1 I;  2BV3 A;  2OI2 A;  2PNZ B;  5EL9 A;  4AIM A;  1UEK A;  3CDJ A;  1WUU A;  5DRP A;  1Y60 A;  1XMO I;  3WU3 A;  4DUY E;  4IZJ B;  4X64 E;  5LMU E;  4IFD C;  3H1C A;  4DU7 A;  1KKH A;  4DR3 E;  2J7K A;  3HJC A;  4IZK A;  1OYP A;  3J7A M;  4JI4 I;  2E1R A;  1E3H A;  3Q6M A;  1HNX E;  1FNM A;  1NHH A;  5L3J A;  4MU3 A;  4B3R I;  2DEI A;  3M85 D;  2JEB A;  4MYU A;  4IFD D;  3GCM A;  4QNJ A;  1OJ4 A;  2JE6 B;  1FJG E;  5K36 B;  2VQE E;  2NN6 B;  2X36 A;  5K36 C;  2VES A;  2HHH E;  2O1V A;  1KVK A;  4WUB A;  3HKM A;  2PNM A;  2BA0 G;  4X66 E;  1HNW I;  4JI6 I;  2JEA A;  1Z0T A;  4DV5 I;  2NPF A;  4LFB E;  3PYG A;  1UDQ A;  2UU9 I;  4KHP E;  1HR0 E;  1A6F A;  4LPF A;  4IS9 A;  4OX9 E;  3GLL A;  1OYS A;  1ELO A;  5IWA E;  4DPU A;  4DR1 I;  2C39 B;  2HK2 A;  4FWG A;  1IBK I;  3GME A;  4HY1 A;  5IT9 Q;  3K1J A;  3J80 Q;  5FLX C;  1H74 A;  3ZKB A;  1N33 E;  4FW9 A;  1N32 I;  4FW6 A;  4GKK I;  1Z0W A;  1PVG A;  4LF9 E;  4JI7 E;  4JI8 E;  3Q1Q A;  3QT6 A;  4LFC I;  4JYA E;  5DNX A;  4DPT A;  2BA1 D;  4GQU A;  1NZ0 A;  2PNZ A;  4JV5 E;  2VQF I;  3J81 Q;  5C0X E;  2UUA I;  2CZ9 A;  3L7Z B;  4FW5 A;  4X62 E;  1J5E E;  4DV7 I;  2V2Z A;  4IZJ A;  5DRO A;  3LTO A;  4OO1 B;  4LF7 I;  4DV2 E;  3QT8 A;  1XNQ E;  4AM3 A;  4R1F A;  1PIE A;  1RRE A;  3PYD A;  4JI1 E;  5JEA B;  2Z5C B;  4DR7 I;  4DV6 I;  2NN6 E;  1FI4 A;  1YHC A;  4B3T I;  4LFA I;  2F1D A;  1IBM I;  1XMO E;  1R6L A;  4NBQ A;  2O1T A;  4OKG A;  4AQY I;  2JE6 A;  5K36 A;  2V8P A;  2V34 A;  2NN6 A;  4B3M I;  3LNU A;  4DV3 I;  4HAC B;  3LPS A;  5DRQ A;  4JI4 E;  1N36 I;  1EI1 A;  4PU9 A;  1N34 E;  2HFS A;  4IFD F;  4DXL A;  4B3R E;  2UXD I;  1H7U A;  3OTO I;  1IBL I;  3ZZU A;  1Z0G A;  4JI5 I;  1Z0E A;  1Y5Y A;  4NXN I;  1Y6Z A;  4RPF A;  2O1W A;  3H4L A;  2IER A;  2BA0 D;  4BA1 B;  2ZM6 I;  5ELW A;  5IT9 C;  2C39 A;  3J80 C;  1S4E A;  5C0X B;  4EMD A;  2IOQ A;  5C0X C;  4DPX A;  1HNW E;  4JI6 E;  5K36 F;  4P52 A;  2GQ0 A;  4DV5 E;  4FW4 A;  2UU9 E;  1YH8 A;  3CDI A;  1KIJ A;  4DV4 I;  2IES A;  5LL6 R;  2PO1 B;  4JI0 I;  4IZJ D;  3ZZ0 A;  1N0U A;  1H73 A;  3HUL A;  4DR1 E;  4FW7 A;  3J81 C;  4OO1 E;  3P3C A;  2F4V I;  4OZE A;  2NN6 C;  1IBK E;  1HK7 A;  3M7N G;  4JI3 I;  5JEA E;  1R6M A;  4WUC A;  1D6T A;  4PRX A;  1N32 E;  4GKK E;  2UXB I;  4DR5 I;  4OO1 A;  1NHJ A;  2R3V A;  3GON A;  2PNL A;  4X65 I;  1PKP A;  1Y4U A;  3PS3 A;  4LFC E;  5K36 D;  3JAM Q;  2Z5C A;  2CGE A;  3PS1 A;  4YHH I;  2VQF E;  1VI7 A;  2GO3 A;  3WU6 A;  4X64 I;  4DPY A;  3ZM7 A;  3T1Y I;  2DEJ A;  4DV7 E;  4DR2 I;  1XNR I;  1USU A;  3Q6N A;  4U3B A;  2WNR A;  1S16 A;  3U1K A;  4LF7 E;  2V2Q A;  4HXZ A;  5A2Q Q;  4HAC A;  4M1K A;  4DR7 E;  4DV6 E;  1NHI A;  2JT2 A;  4J3D A;  4B3T E;  1UDS A;  2WW4 A;  4LFA E;  3M85 G;  1IBM E;  3NZK A;  4IZK B;  2ZIT A;  4DR4 E;  4MDT A;  4AQY E;  4LF6 I;  2AJ4 A;  5BR8 I;  5DNL A;  3P06 A;  4B3M E;  1XHK A;  4DV3 E;  4FW3 A;  1I94 I;  4BA1 A;  2XEX A;  1MG7 A;  4B3S I;  4OO1 C;  3P3E A;  3QT5 A;  1Z0B A;  4K0K E;  2UXD E;  5C0X A;  4MYT A;  3OTO E;  4DR6 I;  2AE8 A;  5JEA C;  1Z59 A;  4JI5 E;  1FKA E;  2LJP A;  4NXN E;  2C38 B;  5LMN I;  3T1H I;  2PO1 A;  1Z5B A;  2X7I A;  4DV1 I;  4OO1 D;  1HNZ I;  1OYR A;  2ZM6 E;  3B4T A;  4ISA A;  2C37 B;  3P76 A;  2Z5B B;  1ZM3 A;  2ZBK B;  4FWD A;  3WU4 A;  3V2U C;  4NXM I;  1N0V C;  4MU1 A;  1Y4S A;  2E5L I;  4JI8 I;  4DV0 I;  3CWV A;  4JV5 I;  3K17 A;  4DV4 E;  3B82 A;  4LF4 I;  3B8H A;  3JAM C;  4JI0 E;  1MX0 A;  5C0X F;  1Z0C A;  2F4V E;  4P7A A;  2PO0 B;  4DU8 A;  4JI2 I;  4LF5 I;  3QT7 A;  2UUC I;  4USK A;  1XMQ I;  2Q2E B;  2WP8 B;  2UXB E;  4LF8 I;  1UDN A;  4DR5 E;  4LCG A;  1Z0V A;  5A2Q C;  1H7S A;  4BA2 B;  4AID A;  4X65 E;  2NN6 F;  3M6A A;  4MQY A;  4ED4 A;  4I3H A;  2UUB I;  2HKE A;  3D4J A;  4FN5 A;  4YHH E;  1USV A;  4GKJ I;  1B63 A;  4KQV A;  4YY3 I;  4IFD B;  3U1Y A;  4WUD A;  2A2D A;  2R42 A;  3T1Y E;  1ZXN A;  2UXC I;  4DR2 E;  1XNR E;  1XXE A;  1Z5A A;  2IOP A;  5GMD A;  5C0X D;  4U3D A;  1DAR A;  2BR2 B;  3KRN A;  1KTV A;  3L7Z A;  3V5R A;  1UDO A;  4DUZ I;  1ZM9 A;  1N34 I;  2PO2 B;  4MU4 A;  4LOM A;  3P3G A;  1EA6 A;  5JEA A;  1P42 A;  2NN6 D;  5EKW A;  2GO4 A;  4DUY I;  2J65 A;  4QNK A;  4LF6 E;  1ZM4 A;  2C38 A;  5LMU I;  2UUA E;  3B78 A;  5BR8 E;  1VIS A;  4DR3 I;  3DD6 A;  1I94 E;  2V2V A;  2HK3 A;  4B3S E;  1RR9 A;  2C37 A;  3PYF A;  2Z5B A;  2EFG A;  3UHM A;  1FWL A;  1HNX I;  4LCF A;  4HYM A;  4DR6 E;  1QZR A;  1RHY A;  2GS8 A;  4LCH A;  1ZXM A;  4ZVI A;  4OO1 F;  3ZZT A;  5LMN E;  1FJG I;  3T1H E;  2VQE I;  4UT4 A;  4DV1 E;  1HNZ E;  2BM0 A;  5JEA F;  1E3P A;  2HHH I;  3PS2 A;  5DRR A;  2CG9 A;  1H72 C;  2PO0 A;  4DPW A;  4NXM E;  4MU0 A;  3WU5 A;  4X66 I;  2JEB B;  1N36 E;  2E5L E;  4DV0 E;  2WP8 A;  1U2R A;  4IFD E;  1IBL E;  4LFB I;  4LF4 E;  4BA2 A;  4KHP I;  4PRV A;  4UTG A;  1HR0 I;  4OX9 I;  3J7A G;  2HKJ A;  1MU5 A;  2Z5E A;  5IWA I;  5FWK A;  2CVE A;  4JI2 E;  4LF5 E;  4IFD A;  3ZKD A;  4N3O A;  2UUC E;  4FWH A;  4XTJ A;  2JEA B;  1Z5C A;  1XMQ E;  2O1U A;  4Z7Y A;  4LF8 E;  5JEA D;  1N33 I;  2BR2 A;  4LF9 I;  3K85 A;  1BKN A;  4JI7 I;  2O3Z A;  5K36 E;  2BM1 A;  2UUB E;  2PO2 A;  5GME A;  4JYA I;  2HFU A;  4GKJ E;  4YY3 E;  1K47 A;  2WNR B;  4DR4 I; 
#chains in the Genus database with same CATH homology
 5EL9 A;  1RHY A;  5DNL A;  5DNX A;  4QNK A;  4GQU A;  4MU4 A;  4MU3 A;  4LPF A;  4QNJ A;  2F1D A;  4MU0 A;  5EKW A;  2AE8 A;  4LOM A;  5ELW A;  4MU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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