5EL9A

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 64
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A02
5DNLA 5EKWA 4QNKA 4GQUA 5DNXA 2F1DA 2AE8A 4MU0A 4MU1A 4QNJA 4MU3A 5ELWA 4MU4A 5EL9A 1RHYA 4LPFA 4LOMA
chains in the Genus database with same CATH superfamily
1VI7A 4LF5E 5K36D 3NZKA 1D6TA 1XMQE 4IS9A 5LMUE 1HK7A 1HNXI 3J7AG 1IBLI 3K17A 2UUCI 5DNXA 4BA1A 2ZITA 3CDJA 3H4LA 2E1RA 2IESA 1ZM2A 3GCMA 4Z7YA 4DV0I 1A6FA 4IFDB 2O3ZA 1N36E 2UU9E 1ZXNA 3QT6A 3Q6NA 2UXBI 4WUCA 1NHHA 1ELOA 2C38A 2WNRB 1H7UA 4DV0E 5DRRA 1N33E 1Z0GA 1WUUA 2BA1G 2J65A 4NXNE 4AIDA 4HYMA 3D4JA 4YHHI 3LPSA 4DR1I 1HR0E 1Y4UA 3B4TA 4LF9E 4OX9I 4GKJE 2NN6F 3B78A 1MG7A 1Z0VA 4DV5I 4U3DA 4OO1F 4JI3E 2HFUA 1ZM9A 1K47A 4FW3A 4MU4A 5K36C 3J7AM 2UXCE 2A2DA 3U1YA 4IZJD 3JAMQ 1ZM4A 5LL6R 1HR0I 4DR7I 1OYPA 3LNUA 4PU9A 4LOMA 5A2QQ 4YHHE 1FWKA 5C0XE 1NZ0A 1H74A 2JEAB 4MU1A 4LFAE 1FWLA 3L7ZB 3WU5A 1Y5YA 4KQVA 2C37B 3PYGA 3PYEA 2Z5BA 1RR9A 1Z0WA 2X7IA 4DUYI 4KHPE 2HK2A 1N0VC 1KTVA 4JI4I 2JT2A 2PO2B 4B3ME 2IOPA 1XNRE 5DRPA 4EMDA 2NN6B 3K1JA 4LPFA 4LF7I 3K85A 3CDIA 1USVA 3B82A 4HY1A 4DPYA 2Z5CA 2A2CA 1EI1A 2V2VA 4B3RE 5JEAE 2DEIA 2BA0D 5L3JA 4LF6I 1MX0A 5GMEA 3F0NA 1BKNA 4DUYE 4KHPI 1OYSA 4B3SI 4DR4I 2GO3A 1NHJA 4LF4I 4PRXA 4JI8I 4LF9I 2C38B 1XMQI 4IZKB 4LF8I 4IFDC 2UU9I 4JI7E 5C0XD 4DV2I 1Z0EA 4B3RI 1B63A 1R6MA 4MYUA 1N34I 2IERA 4MQYA 1UDSA 3OTOI 2O1TA 2F4VI 1J5EE 5K36A 4USMA 4USKA 4FWDA 2UUAE 1PIEA 4X62I 4GKJI 4LCHA 3M85D 1UEKA 2NPFA 3ZM7A 4DV2E 2VESA 2HFSA 5A2QC 4OKGA 3OTOE 2LJPA 4X65E 2JEAA 1N32E 2F1DA 2UXCI 2PO1B 4DU7A 3P3CA 2O1WA 4DU8A 4DV6E 1YH8A 2Z5BB 1R6LA 2WW4A 1UDOA 4DV1E 3GLLA 2XEXA 4JI2E 4JG4A 4IZJA 3QT7A 4IFDF 5JEAF 1H73A 3J81C 4DR3E 4X65I 5C0XB 4DV3E 4K0KE 2PO1A 4JI5E 1VISA 3B8HA 4IZKA 5GMDA 1XHKA 4M1KA 4ISAA 4GQUA 4DV6I 1P42A 4DR2E 1FI4A 5JEAA 4NXME 2GO4A 1IBKI 4DPTA 2ZM6I 4QNKA 2UXDE 5DNLA 4DR7E 1IBMI 4DR2I 3PS2A 3WU6A 5JEAB 5DROA 1H72C 4B3TI 4JI6E 3J80Q 2NN6E 4NXMI 2V8PA 4LCGA 4JI7I 4IFDE 4DR6I 2R3VA 4MYTA 1HNWI 2NN6A 3HJCA 4BA2A 4DR4E 5LMNI 2PO0A 2J7KA 1OYRA 4OO1D 3Q6MA 4B3TE 5IWAE 4JI0E 4JI6I 5ELWA 4X66I 2HKJA 2IOQA 2WP8B 3P3GA 4DV5E 2C37A 2NN6C 2PNMA 4LFCI 3Q1QA 5K36B 1E3HA 2EFGA 1KVKA 1Y4SA 4X62E 4OZEA 5FLXC 2PO0B 2BA0G 2BR2A 1Z0CA 1Z59A 1I94I 2JE6B 4FWGA 4BA2B 2VF3A 4WUDA 4DPWA 3GMEA 2JEBA 5FWKA 4JI2I 1E3PA 4OO1A 2CG9A 4DPXA 4U3BA 1IBKE 3T1YE 4YY3I 3M6AA 4DPUA 4JYAE 3HKMA 2UXDI 1N0UA 5EKWA 3H1CA 4MU3A 4HACA 3J80C 1FJGE 1PKPA 2WNRA 4FW4A 3M7NG 4J3DA 2O1UA 3P3EA 5K36F 4LF5I 2HHHI 4URLA 4OO1C 2UUBI 4LCFA 2JEBB 3WU4A 4IZJB 4I3HA 1MU5A 2PO2A 1DARA 3GONA 4FW6A 1UDNA 2VQEI 5LMNE 4DXLA 4MU0A 4AQYE 2BA1D 4JI8E 2Z5CB 1N36I 3V2UC 2UUBE 3JAMC 4AIMA 4MDTA 4JV5I 4N3OA 5C0XA 4DV7I 4GKKI 4LFAI 1ZM3A 3ZKDA 2UXBE 5BR8E 4DUZI 1Z5CA 3HULA 4ED4A 2BR2B 2HK3A 4DR5I 1Z5BA 1N34E 1N33I 2Q2EB 3V5RA 4B3MI 4NXNI 4BA1B 4IFDD 1XMOI 3LTOA 2VQFE 2F4VE 1YHCA 4ZVIA 3ZKBA 3PS1A 4X64E 1Y6ZA 4DV4E 2Z5EA 1J5EI 4JI1E 3QT8A 1Z0BA 4FWHA 2WP8A 2PNZA 4HXZA 1XNQI 1HNXE 4DR5E 4LF7E 4FN5A 5BR8I 3PRYA 4LF6E 1HNZE 3UHMA 2VQFI 1S16A 4X66E 1B62A 4FW5A 2E5LE 4LF8E 5EL9A 5FLXQ 4OO1B 2BV3A 1XNQE 4LFCE 3M7ND 2V34A 2PNZB 1S4EA 4HACB 5IT9C 4WUBA 1FKAE 2O1VA 2BM0A 5C0XF 4UT4A 2CZ9A 1HNWE 2GQ0A 2AE8A 2PNLA 1Z0TA 4PRVA 2GS8A 1FNMA 4JI3I 1Y60A 2R42A 4UTGA 4YY3E 5JEAC 1KKHA 3ZZUA 1OJ4A 2DEJA 1RHYA 1RREA 1KIJA 5C0XC 4FW9A 4B3SE 3PYFA 1I94E 2HHHE 4LFBE 3WU3A 3U1KA 1H7SA 4DR3I 4OX9E 4DV3I 4K0KI 4Z7CA 4P52A 5LMUI 2CGEA 3CWVA 3L7ZA 2V2QA 2X36A 4QNJA 1IBLE 3PYDA 2VQEE 1HNZI 3M85G 1UDQA 3T1YI 4JYAI 1PVGA 4JI5I 1XXEA 4NBQA 1NHIA 1ZXMA 4JI4E 1Z5AA 1XNRI 2BM1A 2V2ZA 4JI0I 5IWAI 3QT5A 4XTJA 3P06A 2ZBKB 5DRQA 1QZRA 3KRNA 4X64I 2UUAI 3ZZTA 3T1HI 2ZM6E 1U2RA 2C39B 4FW7A 4OO1E 4P7AA 4AM3A 3ZZ0A 5K36E 1N32I 2NN6D 5JEAD 4LF4E 1USUA 4DR1E 4JI1I 4DV4I 4AQYI 2C39A 1IBME 3PS3A 4DV1I 2HKEA 4JV5E 4RPFA 2OI2A 4DV7E 4GKKE 3J81Q 2UUCE 3T1HE 4DUZE 2AJ4A 4R1FA 4DR6E 3P76A 2JE6A 4IFDA 1EA6A 2CVEA 2E5LI 5IT9Q 1FJGI 1XMOE 4LFBI 3DD6A
chains in the Genus database with same CATH topology
5DNLA 5EKWA 4QNKA 4GQUA 5DNXA 2F1DA 2AE8A 4MU0A 4MU1A 4QNJA 4MU3A 5ELWA 4MU4A 5EL9A 1RHYA 4LPFA 4LOMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DNL A;  5EKW A;  4QNK A;  4GQU A;  5DNX A;  2F1D A;  2AE8 A;  4MU0 A;  4MU1 A;  4QNJ A;  4MU3 A;  5ELW A;  4MU4 A;  5EL9 A;  1RHY A;  4LPF A;  4LOM A; 
#chains in the Genus database with same CATH topology
 1VI7 A;  4LF5 E;  5K36 D;  3NZK A;  1D6T A;  1XMQ E;  4IS9 A;  5LMU E;  1HK7 A;  1HNX I;  3J7A G;  1IBL I;  3K17 A;  2UUC I;  5DNX A;  4BA1 A;  2ZIT A;  3CDJ A;  3H4L A;  2E1R A;  2IES A;  1ZM2 A;  3GCM A;  4Z7Y A;  4DV0 I;  1A6F A;  4IFD B;  2O3Z A;  1N36 E;  2UU9 E;  1ZXN A;  3QT6 A;  3Q6N A;  2UXB I;  4WUC A;  1NHH A;  1ELO A;  2C38 A;  2WNR B;  1H7U A;  4DV0 E;  5DRR A;  1N33 E;  1Z0G A;  1WUU A;  2BA1 G;  2J65 A;  4NXN E;  4AID A;  4HYM A;  3D4J A;  4YHH I;  3LPS A;  4DR1 I;  1HR0 E;  1Y4U A;  3B4T A;  4LF9 E;  4OX9 I;  4GKJ E;  2NN6 F;  3B78 A;  1MG7 A;  1Z0V A;  4DV5 I;  4U3D A;  4OO1 F;  4JI3 E;  2HFU A;  1ZM9 A;  1K47 A;  4FW3 A;  4MU4 A;  5K36 C;  3J7A M;  2UXC E;  2A2D A;  3U1Y A;  4IZJ D;  3JAM Q;  1ZM4 A;  5LL6 R;  1HR0 I;  4DR7 I;  1OYP A;  3LNU A;  4PU9 A;  4LOM A;  5A2Q Q;  4YHH E;  1FWK A;  5C0X E;  1NZ0 A;  1H74 A;  2JEA B;  4MU1 A;  4LFA E;  1FWL A;  3L7Z B;  3WU5 A;  1Y5Y A;  4KQV A;  2C37 B;  3PYG A;  3PYE A;  2Z5B A;  1RR9 A;  1Z0W A;  2X7I A;  4DUY I;  4KHP E;  2HK2 A;  1N0V C;  1KTV A;  4JI4 I;  2JT2 A;  2PO2 B;  4B3M E;  2IOP A;  1XNR E;  5DRP A;  4EMD A;  2NN6 B;  3K1J A;  4LPF A;  4LF7 I;  3K85 A;  3CDI A;  1USV A;  3B82 A;  4HY1 A;  4DPY A;  2Z5C A;  2A2C A;  1EI1 A;  2V2V A;  4B3R E;  5JEA E;  2DEI A;  2BA0 D;  5L3J A;  4LF6 I;  1MX0 A;  5GME A;  3F0N A;  1BKN A;  4DUY E;  4KHP I;  1OYS A;  4B3S I;  4DR4 I;  2GO3 A;  1NHJ A;  4LF4 I;  4PRX A;  4JI8 I;  4LF9 I;  2C38 B;  1XMQ I;  4IZK B;  4LF8 I;  4IFD C;  2UU9 I;  4JI7 E;  5C0X D;  4DV2 I;  1Z0E A;  4B3R I;  1B63 A;  1R6M A;  4MYU A;  1N34 I;  2IER A;  4MQY A;  1UDS A;  3OTO I;  2O1T A;  2F4V I;  1J5E E;  5K36 A;  4USM A;  4USK A;  4FWD A;  2UUA E;  1PIE A;  4X62 I;  4GKJ I;  4LCH A;  3M85 D;  1UEK A;  2NPF A;  3ZM7 A;  4DV2 E;  2VES A;  2HFS A;  5A2Q C;  4OKG A;  3OTO E;  2LJP A;  4X65 E;  2JEA A;  1N32 E;  2F1D A;  2UXC I;  2PO1 B;  4DU7 A;  3P3C A;  2O1W A;  4DU8 A;  4DV6 E;  1YH8 A;  2Z5B B;  1R6L A;  2WW4 A;  1UDO A;  4DV1 E;  3GLL A;  2XEX A;  4JI2 E;  4JG4 A;  4IZJ A;  3QT7 A;  4IFD F;  5JEA F;  1H73 A;  3J81 C;  4DR3 E;  4X65 I;  5C0X B;  4DV3 E;  4K0K E;  2PO1 A;  4JI5 E;  1VIS A;  3B8H A;  4IZK A;  5GMD A;  1XHK A;  4M1K A;  4ISA A;  4GQU A;  4DV6 I;  1P42 A;  4DR2 E;  1FI4 A;  5JEA A;  4NXM E;  2GO4 A;  1IBK I;  4DPT A;  2ZM6 I;  4QNK A;  2UXD E;  5DNL A;  4DR7 E;  1IBM I;  4DR2 I;  3PS2 A;  3WU6 A;  5JEA B;  5DRO A;  1H72 C;  4B3T I;  4JI6 E;  3J80 Q;  2NN6 E;  4NXM I;  2V8P A;  4LCG A;  4JI7 I;  4IFD E;  4DR6 I;  2R3V A;  4MYT A;  1HNW I;  2NN6 A;  3HJC A;  4BA2 A;  4DR4 E;  5LMN I;  2PO0 A;  2J7K A;  1OYR A;  4OO1 D;  3Q6M A;  4B3T E;  5IWA E;  4JI0 E;  4JI6 I;  5ELW A;  4X66 I;  2HKJ A;  2IOQ A;  2WP8 B;  3P3G A;  4DV5 E;  2C37 A;  2NN6 C;  2PNM A;  4LFC I;  3Q1Q A;  5K36 B;  1E3H A;  2EFG A;  1KVK A;  1Y4S A;  4X62 E;  4OZE A;  5FLX C;  2PO0 B;  2BA0 G;  2BR2 A;  1Z0C A;  1Z59 A;  1I94 I;  2JE6 B;  4FWG A;  4BA2 B;  2VF3 A;  4WUD A;  4DPW A;  3GME A;  2JEB A;  5FWK A;  4JI2 I;  1E3P A;  4OO1 A;  2CG9 A;  4DPX A;  4U3B A;  1IBK E;  3T1Y E;  4YY3 I;  3M6A A;  4DPU A;  4JYA E;  3HKM A;  2UXD I;  1N0U A;  5EKW A;  3H1C A;  4MU3 A;  4HAC A;  3J80 C;  1FJG E;  1PKP A;  2WNR A;  4FW4 A;  3M7N G;  4J3D A;  2O1U A;  3P3E A;  5K36 F;  4LF5 I;  2HHH I;  4URL A;  4OO1 C;  2UUB I;  4LCF A;  2JEB B;  3WU4 A;  4IZJ B;  4I3H A;  1MU5 A;  2PO2 A;  1DAR A;  3GON A;  4FW6 A;  1UDN A;  2VQE I;  5LMN E;  4DXL A;  4MU0 A;  4AQY E;  2BA1 D;  4JI8 E;  2Z5C B;  1N36 I;  3V2U C;  2UUB E;  3JAM C;  4AIM A;  4MDT A;  4JV5 I;  4N3O A;  5C0X A;  4DV7 I;  4GKK I;  4LFA I;  1ZM3 A;  3ZKD A;  2UXB E;  5BR8 E;  4DUZ I;  1Z5C A;  3HUL A;  4ED4 A;  2BR2 B;  2HK3 A;  4DR5 I;  1Z5B A;  1N34 E;  1N33 I;  2Q2E B;  3V5R A;  4B3M I;  4NXN I;  4BA1 B;  4IFD D;  1XMO I;  3LTO A;  2VQF E;  2F4V E;  1YHC A;  4ZVI A;  3ZKB A;  3PS1 A;  4X64 E;  1Y6Z A;  4DV4 E;  2Z5E A;  1J5E I;  4JI1 E;  3QT8 A;  1Z0B A;  4FWH A;  2WP8 A;  2PNZ A;  4HXZ A;  1XNQ I;  1HNX E;  4DR5 E;  4LF7 E;  4FN5 A;  5BR8 I;  3PRY A;  4LF6 E;  1HNZ E;  3UHM A;  2VQF I;  1S16 A;  4X66 E;  1B62 A;  4FW5 A;  2E5L E;  4LF8 E;  5EL9 A;  5FLX Q;  4OO1 B;  2BV3 A;  1XNQ E;  4LFC E;  3M7N D;  2V34 A;  2PNZ B;  1S4E A;  4HAC B;  5IT9 C;  4WUB A;  1FKA E;  2O1V A;  2BM0 A;  5C0X F;  4UT4 A;  2CZ9 A;  1HNW E;  2GQ0 A;  2AE8 A;  2PNL A;  1Z0T A;  4PRV A;  2GS8 A;  1FNM A;  4JI3 I;  1Y60 A;  2R42 A;  4UTG A;  4YY3 E;  5JEA C;  1KKH A;  3ZZU A;  1OJ4 A;  2DEJ A;  1RHY A;  1RRE A;  1KIJ A;  5C0X C;  4FW9 A;  4B3S E;  3PYF A;  1I94 E;  2HHH E;  4LFB E;  3WU3 A;  3U1K A;  1H7S A;  4DR3 I;  4OX9 E;  4DV3 I;  4K0K I;  4Z7C A;  4P52 A;  5LMU I;  2CGE A;  3CWV A;  3L7Z A;  2V2Q A;  2X36 A;  4QNJ A;  1IBL E;  3PYD A;  2VQE E;  1HNZ I;  3M85 G;  1UDQ A;  3T1Y I;  4JYA I;  1PVG A;  4JI5 I;  1XXE A;  4NBQ A;  1NHI A;  1ZXM A;  4JI4 E;  1Z5A A;  1XNR I;  2BM1 A;  2V2Z A;  4JI0 I;  5IWA I;  3QT5 A;  4XTJ A;  3P06 A;  2ZBK B;  5DRQ A;  1QZR A;  3KRN A;  4X64 I;  2UUA I;  3ZZT A;  3T1H I;  2ZM6 E;  1U2R A;  2C39 B;  4FW7 A;  4OO1 E;  4P7A A;  4AM3 A;  3ZZ0 A;  5K36 E;  1N32 I;  2NN6 D;  5JEA D;  4LF4 E;  1USU A;  4DR1 E;  4JI1 I;  4DV4 I;  4AQY I;  2C39 A;  1IBM E;  3PS3 A;  4DV1 I;  2HKE A;  4JV5 E;  4RPF A;  2OI2 A;  4DV7 E;  4GKK E;  3J81 Q;  2UUC E;  3T1H E;  4DUZ E;  2AJ4 A;  4R1F A;  4DR6 E;  3P76 A;  2JE6 A;  4IFD A;  1EA6 A;  2CVE A;  2E5L I;  5IT9 Q;  1FJG I;  1XMO E;  4LFB I;  3DD6 A; 
#chains in the Genus database with same CATH homology
 5DNL A;  5EKW A;  4QNK A;  4GQU A;  5DNX A;  2F1D A;  2AE8 A;  4MU0 A;  4MU1 A;  4QNJ A;  4MU3 A;  5ELW A;  4MU4 A;  5EL9 A;  1RHY A;  4LPF A;  4LOM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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