5EL9A

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
199
structure length
199
Chain Sequence
b'SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
molecule tags Lyase
source organism Arabidopsis thaliana
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
total genus 64
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A02
2AE8A 4MU3A 5EKWA 4LOMA 5DNXA 5DNLA 4MU4A 1RHYA 5ELWA 4GQUA 4LPFA 4MU1A 4QNJA 4QNKA 5EL9A 2F1DA 4MU0A
chains in the Genus database with same CATH superfamily
2AE8A 4DV0I 2HHHI 2UUBE 1IBME 4LF9I 2ZM6E 3T1HI 3Q6MA 2IOPA 4X62E 1D6TA 4DV6I 4OO1D 1S4EA 3V2UC 2UUAE 3CDJA 4JI6E 1ZM4A 5K36A 1FWLA 3M7ND 2BR2B 4IFDF 1ZXMA 4X62I 5JEAB 1BKNA 2F4VI 5IWAE 3QT6A 2HKEA 2IESA 1Z0BA 1XMOE 4BA1B 4MU3A 1I94I 5DRPA 3B82A 3H1CA 4DV3I 1HNZI 1NHIA 1WUUA 2E5LE 4JV5I 4PRVA 2NN6D 1IBLI 3ZKDA 4DR6I 1RR9A 1UEKA 2Z5CB 3PS3A 5GMEA 4FWHA 1UDNA 2HK2A 1Y4UA 4AIDA 4X66E 4DPUA 4P7AA 4OZEA 3M7NG 4B3ME 4LFCE 2GS8A 5IT9C 4JI5I 4R1FA 1XNRE 4HACA 2OI2A 2DEJA 2WNRB 4U3BA 3L7ZB 4JI5E 2V2VA 4DXLA 4JV5E 4QNKA 2O1WA 3JAMQ 1N34E 2UXDE 2UXCE 4DUYI 2Z5CA 3K1JA 1XNQE 2X36A 4IZJB 4DV1I 4B3TI 4IFDC 1HR0E 1Z0EA 2JEBB 2XEXA 4DV7E 2WP8B 4NXME 5FWKA 3P06A 1USUA 1E3HA 4X65E 1XMQI 1EI1A 5JEAF 4LFAE 4DR7E 4FW4A 4HY1A 4MQYA 5EKWA 3LNUA 2JEAA 2BA0D 5IWAI 4B3RI 1A6FA 2JEBA 4LF6E 3PYGA 3T1HE 4DPWA 4OKGA 2VQEE 3PYFA 4EMDA 4FW6A 4DUYE 4KHPE 1N0UA 1H7UA 4JI0E 1HK7A 2UUAI 4JI1I 4JI3E 4JYAI 1OYSA 4IFDA 2VQEI 2Z5EA 2IERA 3WU6A 3J7AG 2C37B 4DV0E 4X64I 3L7ZA 2WW4A 2BM1A 1MX0A 4LFBE 2HK3A 1FWKA 2PNLA 4KQVA 1KTVA 1VI7A 3WU3A 2F1DA 2LJPA 4LF8I 4DR5E 4LF4I 2V2QA 4MDTA 2WP8A 4JI4E 2VQFE 2CG9A 4JYAE 4DU7A 3H4LA 2GO4A 5L3JA 3WU4A 4FW9A 4NXNI 3U1YA 4GKKE 4DPYA 1UDSA 1Z5BA 2O1UA 2BM0A 1KKHA 3V5RA 4JI6I 4IFDE 4BA1A 4DUZI 1ZXNA 3PYEA 5LMNI 4GKJE 3PS1A 1N33I 2Q2EB 1Z5CA 5DRQA 4FWDA 1I94E 4DR4I 3DD6A 1B63A 2DEIA 4HACB 2UXDI 4DV3E 4DV5E 3J80Q 1U2RA 2JE6A 4FW3A 4OO1A 3M6AA 1H73A 2J65A 1YHCA 5FLXC 4B3RE 4P52A 3JAMC 3F0NA 4B3SI 4QNJA 4LF6I 3PRYA 4OO1C 4MYUA 4DPXA 1XHKA 2C38B 4LF7E 4X65I 4ZVIA 4B3MI 1Z0WA 3ZM7A 4B3SE 2ZM6I 1N36E 3T1YI 1H74A 4DR2I 1KVKA 2PO1A 4YHHI 3OTOI 2BA0G 4PU9A 4DV1E 4UT4A 4Z7YA 3Q1QA 3GCMA 2CVEA 4RPFA 4DV7I 1MU5A 4LF5E 1HNWE 2C39B 4MYTA 2ZITA 4JI8I 5DROA 3KRNA 4K0KE 1P42A 1XXEA 2CZ9A 3GMEA 1S16A 4UTGA 2PO2A 5C0XC 1HNZE 2J7KA 2NN6C 4FW7A 5FLXQ 5BR8I 1HR0I 3M85G 4LPFA 3LTOA 2JE6B 4LFBI 1IBKI 5C0XE 4DR6E 1Z0TA 4DR2E 4J3DA 5IT9Q 3M85D 2UXBI 4IZKB 3QT7A 3J80C 4DV4E 4DR3I 1UDOA 5DNXA 2C37A 4LFCI 5K36F 2AJ4A 5JEAD 1R6MA 1N0VC 2PO0A 5K36C 2NN6F 2UXBE 4IZJD 1PVGA 1J5EI 1YH8A 4OO1B 4WUCA 2BA1D 1FI4A 1RREA 2O3ZA 1FJGI 1Y60A 1N32I 1NHJA 1IBMI 4HXZA 4GQUA 2C39A 2JEAB 5LMNE 1N34I 4U3DA 1OJ4A 4LCGA 4JI4I 1N32E 1MG7A 4DV4I 1R6LA 1HNXE 1XNQI 2PNMA 2NN6E 5C0XA 2V2ZA 5DNLA 3QT8A 4GKKI 3ZKBA 4N3OA 2A2CA 5K36E 1Y6ZA 2V34A 1Z59A 5C0XF 4IFDB 4DR7I 2VQFI 1H7SA 1OYPA 1UDQA 2NN6B 4LOMA 2VF3A 4K0KI 3P76A 1PIEA 2O1TA 5LL6R 4OO1F 4YHHE 3OTOE 2WNRA 1E3PA 2ZBKB 2PNZB 5LMUE 4IS9A 1PKPA 2UU9E 3ZZ0A 3HJCA 3WU5A 4LF7I 2NN6A 4BA2B 4DU8A 4B3TE 3HKMA 3K85A 4IFDD 4NXMI 4JI0I 4AIMA 1RHYA 4FN5A 3P3EA 4JI3I 3J7AM 2UUCI 1EA6A 2PNZA 2A2DA 4NBQA 4WUDA 4DR5I 5A2QC 2R42A 4OX9I 2CGEA 4JI8E 5GMDA 4JI2E 4JG4A 5ELWA 2E1RA 1H72C 1FNMA 1VISA 2PO2B 4JI7E 3NZKA 1OYRA 5K36B 4X66I 3J81Q 3Q6NA 4IZJA 4DV2E 4AM3A 1ZM2A 4LF4E 2JT2A 4LF5I 1HNWI 4DPTA 1FJGE 4JI7I 4MU4A 4X64E 4OO1E 4M1KA 3J81C 1KIJA 1QZRA 3D4JA 1IBLE 4BA2A 5K36D 4DV2I 5C0XB 2PO0B 4NXNE 3GONA 2O1VA 3ZZTA 4JI1E 3B8HA 4ISAA 4LF9E 1IBKE 2GQ0A 2IOQA 3B4TA 4DUZE 4LF8E 2V8PA 1Z5AA 3CDIA 4DV6E 4YY3E 3P3CA 2EFGA 4DR3E 1DARA 3QT5A 1K47A 5JEAA 5LMUI 4DV5I 2BR2A 2F4VE 4PRXA 4WUBA 2NPFA 2HFSA 1Y5YA 5DRRA 4XTJA 3GLLA 4GKJI 2E5LI 1Y4SA 1N33E 2GO3A 4AQYE 3LPSA 4MU0A 3K17A 4USMA 1Z0CA 2PO1B 4FWGA 2R3VA 4YY3I 1N36I 3CWVA 4USKA 4KHPI 4OX9E 2Z5BA 5C0XD 1HNXI 3UHMA 4LCFA 1NHHA 3ZZUA 3PYDA 2C38A 4HYMA 2BV3A 4LFAI 1XNRI 1FKAE 4URLA 1ELOA 2BA1G 2X7IA 2UUCE 4LCHA 5JEAE 4DR4E 1Z0GA 3T1YE 3B78A 3HULA 2VESA 1NZ0A 5JEAC 2HKJA 1B62A 4DR1E 2UU9I 4AQYI 3PS2A 2HFUA 5BR8E 1Z0VA 5EL9A 1ZM9A 4JI2I 2HHHE 2UUBI 2Z5BB 1ZM3A 4ED4A 1USVA 1XMOI 4I3HA 1XMQE 4IZKA 3U1KA 2UXCI 3P3GA 4FW5A 4MU1A 4Z7CA 1J5EE 5A2QQ 4DR1I
chains in the Genus database with same CATH topology
2AE8A 4MU3A 5EKWA 4LOMA 5DNXA 5DNLA 4MU4A 1RHYA 5ELWA 4GQUA 4LPFA 4MU1A 4QNJA 4QNKA 5EL9A 2F1DA 4MU0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AE8 A;  4MU3 A;  5EKW A;  4LOM A;  5DNX A;  5DNL A;  4MU4 A;  1RHY A;  5ELW A;  4GQU A;  4LPF A;  4MU1 A;  4QNJ A;  4QNK A;  5EL9 A;  2F1D A;  4MU0 A; 
#chains in the Genus database with same CATH topology
 2AE8 A;  4DV0 I;  2HHH I;  2UUB E;  1IBM E;  4LF9 I;  2ZM6 E;  3T1H I;  3Q6M A;  2IOP A;  4X62 E;  1D6T A;  4DV6 I;  4OO1 D;  1S4E A;  3V2U C;  2UUA E;  3CDJ A;  4JI6 E;  1ZM4 A;  5K36 A;  1FWL A;  3M7N D;  2BR2 B;  4IFD F;  1ZXM A;  4X62 I;  5JEA B;  1BKN A;  2F4V I;  5IWA E;  3QT6 A;  2HKE A;  2IES A;  1Z0B A;  1XMO E;  4BA1 B;  4MU3 A;  1I94 I;  5DRP A;  3B82 A;  3H1C A;  4DV3 I;  1HNZ I;  1NHI A;  1WUU A;  2E5L E;  4JV5 I;  4PRV A;  2NN6 D;  1IBL I;  3ZKD A;  4DR6 I;  1RR9 A;  1UEK A;  2Z5C B;  3PS3 A;  5GME A;  4FWH A;  1UDN A;  2HK2 A;  1Y4U A;  4AID A;  4X66 E;  4DPU A;  4P7A A;  4OZE A;  3M7N G;  4B3M E;  4LFC E;  2GS8 A;  5IT9 C;  4JI5 I;  4R1F A;  1XNR E;  4HAC A;  2OI2 A;  2DEJ A;  2WNR B;  4U3B A;  3L7Z B;  4JI5 E;  2V2V A;  4DXL A;  4JV5 E;  4QNK A;  2O1W A;  3JAM Q;  1N34 E;  2UXD E;  2UXC E;  4DUY I;  2Z5C A;  3K1J A;  1XNQ E;  2X36 A;  4IZJ B;  4DV1 I;  4B3T I;  4IFD C;  1HR0 E;  1Z0E A;  2JEB B;  2XEX A;  4DV7 E;  2WP8 B;  4NXM E;  5FWK A;  3P06 A;  1USU A;  1E3H A;  4X65 E;  1XMQ I;  1EI1 A;  5JEA F;  4LFA E;  4DR7 E;  4FW4 A;  4HY1 A;  4MQY A;  5EKW A;  3LNU A;  2JEA A;  2BA0 D;  5IWA I;  4B3R I;  1A6F A;  2JEB A;  4LF6 E;  3PYG A;  3T1H E;  4DPW A;  4OKG A;  2VQE E;  3PYF A;  4EMD A;  4FW6 A;  4DUY E;  4KHP E;  1N0U A;  1H7U A;  4JI0 E;  1HK7 A;  2UUA I;  4JI1 I;  4JI3 E;  4JYA I;  1OYS A;  4IFD A;  2VQE I;  2Z5E A;  2IER A;  3WU6 A;  3J7A G;  2C37 B;  4DV0 E;  4X64 I;  3L7Z A;  2WW4 A;  2BM1 A;  1MX0 A;  4LFB E;  2HK3 A;  1FWK A;  2PNL A;  4KQV A;  1KTV A;  1VI7 A;  3WU3 A;  2F1D A;  2LJP A;  4LF8 I;  4DR5 E;  4LF4 I;  2V2Q A;  4MDT A;  2WP8 A;  4JI4 E;  2VQF E;  2CG9 A;  4JYA E;  4DU7 A;  3H4L A;  2GO4 A;  5L3J A;  3WU4 A;  4FW9 A;  4NXN I;  3U1Y A;  4GKK E;  4DPY A;  1UDS A;  1Z5B A;  2O1U A;  2BM0 A;  1KKH A;  3V5R A;  4JI6 I;  4IFD E;  4BA1 A;  4DUZ I;  1ZXN A;  3PYE A;  5LMN I;  4GKJ E;  3PS1 A;  1N33 I;  2Q2E B;  1Z5C A;  5DRQ A;  4FWD A;  1I94 E;  4DR4 I;  3DD6 A;  1B63 A;  2DEI A;  4HAC B;  2UXD I;  4DV3 E;  4DV5 E;  3J80 Q;  1U2R A;  2JE6 A;  4FW3 A;  4OO1 A;  3M6A A;  1H73 A;  2J65 A;  1YHC A;  5FLX C;  4B3R E;  4P52 A;  3JAM C;  3F0N A;  4B3S I;  4QNJ A;  4LF6 I;  3PRY A;  4OO1 C;  4MYU A;  4DPX A;  1XHK A;  2C38 B;  4LF7 E;  4X65 I;  4ZVI A;  4B3M I;  1Z0W A;  3ZM7 A;  4B3S E;  2ZM6 I;  1N36 E;  3T1Y I;  1H74 A;  4DR2 I;  1KVK A;  2PO1 A;  4YHH I;  3OTO I;  2BA0 G;  4PU9 A;  4DV1 E;  4UT4 A;  4Z7Y A;  3Q1Q A;  3GCM A;  2CVE A;  4RPF A;  4DV7 I;  1MU5 A;  4LF5 E;  1HNW E;  2C39 B;  4MYT A;  2ZIT A;  4JI8 I;  5DRO A;  3KRN A;  4K0K E;  1P42 A;  1XXE A;  2CZ9 A;  3GME A;  1S16 A;  4UTG A;  2PO2 A;  5C0X C;  1HNZ E;  2J7K A;  2NN6 C;  4FW7 A;  5FLX Q;  5BR8 I;  1HR0 I;  3M85 G;  4LPF A;  3LTO A;  2JE6 B;  4LFB I;  1IBK I;  5C0X E;  4DR6 E;  1Z0T A;  4DR2 E;  4J3D A;  5IT9 Q;  3M85 D;  2UXB I;  4IZK B;  3QT7 A;  3J80 C;  4DV4 E;  4DR3 I;  1UDO A;  5DNX A;  2C37 A;  4LFC I;  5K36 F;  2AJ4 A;  5JEA D;  1R6M A;  1N0V C;  2PO0 A;  5K36 C;  2NN6 F;  2UXB E;  4IZJ D;  1PVG A;  1J5E I;  1YH8 A;  4OO1 B;  4WUC A;  2BA1 D;  1FI4 A;  1RRE A;  2O3Z A;  1FJG I;  1Y60 A;  1N32 I;  1NHJ A;  1IBM I;  4HXZ A;  4GQU A;  2C39 A;  2JEA B;  5LMN E;  1N34 I;  4U3D A;  1OJ4 A;  4LCG A;  4JI4 I;  1N32 E;  1MG7 A;  4DV4 I;  1R6L A;  1HNX E;  1XNQ I;  2PNM A;  2NN6 E;  5C0X A;  2V2Z A;  5DNL A;  3QT8 A;  4GKK I;  3ZKB A;  4N3O A;  2A2C A;  5K36 E;  1Y6Z A;  2V34 A;  1Z59 A;  5C0X F;  4IFD B;  4DR7 I;  2VQF I;  1H7S A;  1OYP A;  1UDQ A;  2NN6 B;  4LOM A;  2VF3 A;  4K0K I;  3P76 A;  1PIE A;  2O1T A;  5LL6 R;  4OO1 F;  4YHH E;  3OTO E;  2WNR A;  1E3P A;  2ZBK B;  2PNZ B;  5LMU E;  4IS9 A;  1PKP A;  2UU9 E;  3ZZ0 A;  3HJC A;  3WU5 A;  4LF7 I;  2NN6 A;  4BA2 B;  4DU8 A;  4B3T E;  3HKM A;  3K85 A;  4IFD D;  4NXM I;  4JI0 I;  4AIM A;  1RHY A;  4FN5 A;  3P3E A;  4JI3 I;  3J7A M;  2UUC I;  1EA6 A;  2PNZ A;  2A2D A;  4NBQ A;  4WUD A;  4DR5 I;  5A2Q C;  2R42 A;  4OX9 I;  2CGE A;  4JI8 E;  5GMD A;  4JI2 E;  4JG4 A;  5ELW A;  2E1R A;  1H72 C;  1FNM A;  1VIS A;  2PO2 B;  4JI7 E;  3NZK A;  1OYR A;  5K36 B;  4X66 I;  3J81 Q;  3Q6N A;  4IZJ A;  4DV2 E;  4AM3 A;  1ZM2 A;  4LF4 E;  2JT2 A;  4LF5 I;  1HNW I;  4DPT A;  1FJG E;  4JI7 I;  4MU4 A;  4X64 E;  4OO1 E;  4M1K A;  3J81 C;  1KIJ A;  1QZR A;  3D4J A;  1IBL E;  4BA2 A;  5K36 D;  4DV2 I;  5C0X B;  2PO0 B;  4NXN E;  3GON A;  2O1V A;  3ZZT A;  4JI1 E;  3B8H A;  4ISA A;  4LF9 E;  1IBK E;  2GQ0 A;  2IOQ A;  3B4T A;  4DUZ E;  4LF8 E;  2V8P A;  1Z5A A;  3CDI A;  4DV6 E;  4YY3 E;  3P3C A;  2EFG A;  4DR3 E;  1DAR A;  3QT5 A;  1K47 A;  5JEA A;  5LMU I;  4DV5 I;  2BR2 A;  2F4V E;  4PRX A;  4WUB A;  2NPF A;  2HFS A;  1Y5Y A;  5DRR A;  4XTJ A;  3GLL A;  4GKJ I;  2E5L I;  1Y4S A;  1N33 E;  2GO3 A;  4AQY E;  3LPS A;  4MU0 A;  3K17 A;  4USM A;  1Z0C A;  2PO1 B;  4FWG A;  2R3V A;  4YY3 I;  1N36 I;  3CWV A;  4USK A;  4KHP I;  4OX9 E;  2Z5B A;  5C0X D;  1HNX I;  3UHM A;  4LCF A;  1NHH A;  3ZZU A;  3PYD A;  2C38 A;  4HYM A;  2BV3 A;  4LFA I;  1XNR I;  1FKA E;  4URL A;  1ELO A;  2BA1 G;  2X7I A;  2UUC E;  4LCH A;  5JEA E;  4DR4 E;  1Z0G A;  3T1Y E;  3B78 A;  3HUL A;  2VES A;  1NZ0 A;  5JEA C;  2HKJ A;  1B62 A;  4DR1 E;  2UU9 I;  4AQY I;  3PS2 A;  2HFU A;  5BR8 E;  1Z0V A;  5EL9 A;  1ZM9 A;  4JI2 I;  2HHH E;  2UUB I;  2Z5B B;  1ZM3 A;  4ED4 A;  1USV A;  1XMO I;  4I3H A;  1XMQ E;  4IZK A;  3U1K A;  2UXC I;  3P3G A;  4FW5 A;  4MU1 A;  4Z7C A;  1J5E E;  5A2Q Q;  4DR1 I; 
#chains in the Genus database with same CATH homology
 2AE8 A;  4MU3 A;  5EKW A;  4LOM A;  5DNX A;  5DNL A;  4MU4 A;  1RHY A;  5ELW A;  4GQU A;  4LPF A;  4MU1 A;  4QNJ A;  4QNK A;  5EL9 A;  2F1D A;  4MU0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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