5EL9A

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 64
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A02
5EKWA 4QNKA 4MU3A 2AE8A 1RHYA 4LOMA 4GQUA 5DNXA 5ELWA 4LPFA 4MU1A 4QNJA 5EL9A 5DNLA 2F1DA 4MU0A 4MU4A
chains in the Genus database with same CATH superfamily
4LCHA 1ZM9A 3LPSA 1HNXE 3CDIA 1FWLA 2VQFE 4IFDB 1N34E 2V2VA 4B3MI 1UDSA 4DR1E 1H7UA 1VI7A 4DPTA 2UU9I 4B3SE 4LPFA 1MX0A 4DV5I 5EKWA 4JI3E 2HHHI 4RPFA 4OKGA 4X65E 4NXMI 3B78A 3PS3A 5DNXA 4LCGA 1HK7A 1Y4UA 4DPXA 4LF5I 4JI6E 1PKPA 1XNRI 1HR0E 2BR2B 4X64I 4USMA 3B8HA 3OTOE 2VQEI 1Y6ZA 2Z5CB 2UXBI 1FKAE 4FWGA 1VISA 2XEXA 4DR6E 1EI1A 4LF8I 4JI5E 2C39B 2GO4A 3P06A 2UUBE 2BA1D 4DUZI 4QNJA 4LF7E 4X62I 1XNQI 4LFBE 1HNZI 3PYFA 2NN6A 1Z5AA 4GKKI 2EFGA 1Z0WA 4UT4A 1Z0BA 5LMNI 4DR7I 1XMOI 4IS9A 4R1FA 4IFDF 4KHPI 1Z0VA 3J81Q 3QT5A 2WP8A 4DV7I 2O1VA 2J7KA 4DV6I 1ZXNA 1J5EE 5C0XB 4MYUA 3JAMQ 4DPWA 1B62A 4NXNE 2UXCE 2BM0A 2UUCI 4FN5A 5C0XD 4JI2I 4DR4E 3J80Q 4ISAA 1UEKA 2F4VE 2PO0A 1BKNA 3WU4A 5C0XE 2R3VA 3PS1A 4B3RI 4DR5E 4OO1B 3QT7A 1FJGE 4HXZA 4GKJE 4LOMA 5FLXQ 1DARA 1I94E 1YH8A 4PRVA 4DU8A 1HNWI 1N32I 4UTGA 1E3HA 4GQUA 4FW7A 2X36A 3PYGA 1Y60A 4LFCE 4OO1D 2A2CA 5LMUI 2JEAA 4IZJB 1N36E 4BA1B 4YY3E 1KKHA 2VESA 4JI8E 5C0XF 4OO1E 5JEAC 3T1YE 3U1YA 4OZEA 2E5LE 4DR2E 5DRQA 3J7AM 5FLXC 1KIJA 1FWKA 2ZITA 2IERA 3LNUA 3Q6NA 2PNMA 3T1HE 1NHIA 4XTJA 4JV5I 2J65A 3P3EA 4K0KI 5DNLA 4X66E 1IBLE 4OX9E 2CGEA 4EMDA 1XHKA 4DR3I 4OO1F 1ZXMA 4JI5I 2UUBI 4LF4E 5A2QC 4AIMA 3M6AA 4LF6I 1Y4SA 1KVKA 1FI4A 4WUDA 1NZ0A 4FW9A 4DV4E 4WUBA 3V2UC 2AJ4A 5K36D 3K85A 4LCFA 4JI7E 2HK2A 4MU1A 3Q6MA 3B4TA 5K36B 5LL6R 4IFDD 4JYAE 5K36E 3ZKDA 2ZM6I 4DV1E 4IZKA 2X7IA 3ZZ0A 2BA1G 4P7AA 1P42A 1RR9A 3KRNA 4IFDE 2HK3A 5JEAB 2CG9A 4FW6A 1IBKE 2NN6B 3HKMA 4JI0E 1NHJA 4FW3A 1PVGA 3P76A 2GQ0A 4YHHE 4DV2E 4MU4A 4NXNI 2DEJA 1IBME 2JT2A 4LF9I 3ZZUA 2WP8B 3GONA 3HULA 3WU6A 1N0VC 5DRRA 5K36F 2V8PA 3PRYA 5JEAA 4LFAE 3QT8A 5IWAE 3HJCA 4DV0E 1OJ4A 4MYTA 4JI4I 1Z5CA 4KQVA 4MDTA 1USUA 1D6TA 4B3ME 2UU9E 5FWKA 4AQYI 4DU7A 1WUUA 4DV5E 4B3TI 2PO0B 4MQYA 3J7AG 4JI1I 3ZM7A 1N33I 4Z7YA 1N0UA 1XXEA 4DUYI 4BA2B 2NN6F 3PS2A 4LF5E 5BR8E 1XNRE 5GMEA 4X64E 4HYMA 2VQEE 3T1HI 2UXBE 2UXDI 3GCMA 1OYSA 2HFUA 2ZBKB 2JEAB 3L7ZA 1Z59A 5GMDA 4BA2A 1ZM4A 4X66I 4LF8E 1R6MA 3M7ND 4LFBI 4U3BA 1XNQE 3P3GA 1HNXI 1HNZE 2PNZA 5K36C 2VQFI 4P52A 2UUAE 1N34I 2HKJA 4GKKE 4LF4I 3Q1QA 4DR1I 4J3DA 5LMNE 4DR7E 2JE6B 3WU5A 1XMOE 4B3SI 4KHPE 2BM1A 4IFDC 3DD6A 4JI3I 3B82A 2E1RA 5IT9C 1QZRA 5A2QQ 2O1UA 2WW4A 1U2RA 4DPUA 4X65I 4MU0A 3CWVA 4IZJD 1H73A 3H4LA 2JE6A 3P3CA 4JI6I 2LJPA 3M85D 1H72C 2OI2A 1HR0I 3OTOI 4ZVIA 2R42A 1H7SA 2PNLA 1Y5YA 2UUCE 2BA0D 4JI2E 4DR6I 2GO3A 4DPYA 4PU9A 4IZKB 1PIEA 4LF7I 4WUCA 2AE8A 2Q2EB 2Z5EA 2PO1B 4B3RE 3CDJA 4URLA 2F1DA 5IWAI 4DV0I 2A2DA 1ELOA 1HNWE 1ZM3A 2HFSA 2C38B 1S16A 1N32E 4DV3E 2HKEA 2NPFA 2Z5BA 4AM3A 5EL9A 2VF3A 2PO1A 5LMUE 1J5EI 2O1WA 4MU3A 5C0XC 5K36A 2C38A 3GLLA 1YHCA 4FWHA 2UXCI 3QT6A 2O1TA 3V5RA 2CZ9A 4IFDA 5JEAD 1K47A 4DR4I 2NN6D 4FWDA 1S4EA 3PYEA 1MU5A 1ZM2A 5BR8I 1XMQE 2F4VI 4AIDA 1RHYA 4JV5E 4K0KE 3U1KA 4JG4A 5JEAE 3PYDA 3UHMA 2NN6E 3WU3A 3ZKBA 4DR5I 4I3HA 1FJGI 4DR3E 2CVEA 4GKJI 4Z7CA 1UDQA 4OO1C 1I94I 2IESA 2IOPA 4FW5A 4LF6E 3F0NA 2BR2A 4M1KA 2HHHE 4LFCI 2UUAI 1OYPA 2V2QA 2BV3A 2Z5CA 1USVA 2IOQA 1RREA 4NBQA 1N36I 1OYRA 4U3DA 3L7ZB 4NXME 4HY1A 3NZKA 4YY3I 2ZM6E 3M7NG 4JI8I 5JEAF 2C39A 3T1YI 3H1CA 4QNKA 2E5LI 4DR2I 2PNZB 5IT9Q 1FNMA 2DEIA 5L3JA 2C37B 3GMEA 5ELWA 3K17A 1IBLI 1EA6A 4LF9E 1E3PA 4DUZE 4OX9I 4X62E 4USKA 1B63A 5C0XA 3J81C 2C37A 4HACB 5DRPA 3M85G 4JI4E 4DV4I 2GS8A 4DXLA 4JI7I 1UDNA 4DV7E 1Z0GA 1A6FA 2BA0G 1H74A 3JAMC 4DV6E 1Z0TA 3K1JA 4JYAI 4DV1I 4DV3I 1KTVA 4HACA 2WNRB 4AQYE 4B3TE 5DROA 4ED4A 2JEBB 4OO1A 2V2ZA 2V34A 3J80C 4JI1E 1IBKI 1N33E 4DUYE 4FW4A 4JI0I 1Z5BA 4YHHI 1Z0CA 1R6LA 4DV2I 2PO2B 1UDOA 2NN6C 1MG7A 1IBMI 2WNRA 1Z0EA 3LTOA 2Z5BB 1NHHA 4PRXA 4N3OA 3D4JA 2O3ZA 2JEBA 4LFAI 2UXDE 4IZJA 1XMQI 4BA1A 3ZZTA 2PO2A
chains in the Genus database with same CATH topology
5EKWA 4QNKA 4MU3A 2AE8A 1RHYA 4LOMA 4GQUA 5DNXA 5ELWA 4LPFA 4MU1A 4QNJA 5EL9A 5DNLA 2F1DA 4MU0A 4MU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EKW A;  4QNK A;  4MU3 A;  2AE8 A;  1RHY A;  4LOM A;  4GQU A;  5DNX A;  5ELW A;  4LPF A;  4MU1 A;  4QNJ A;  5EL9 A;  5DNL A;  2F1D A;  4MU0 A;  4MU4 A; 
#chains in the Genus database with same CATH topology
 4LCH A;  1ZM9 A;  3LPS A;  1HNX E;  3CDI A;  1FWL A;  2VQF E;  4IFD B;  1N34 E;  2V2V A;  4B3M I;  1UDS A;  4DR1 E;  1H7U A;  1VI7 A;  4DPT A;  2UU9 I;  4B3S E;  4LPF A;  1MX0 A;  4DV5 I;  5EKW A;  4JI3 E;  2HHH I;  4RPF A;  4OKG A;  4X65 E;  4NXM I;  3B78 A;  3PS3 A;  5DNX A;  4LCG A;  1HK7 A;  1Y4U A;  4DPX A;  4LF5 I;  4JI6 E;  1PKP A;  1XNR I;  1HR0 E;  2BR2 B;  4X64 I;  4USM A;  3B8H A;  3OTO E;  2VQE I;  1Y6Z A;  2Z5C B;  2UXB I;  1FKA E;  4FWG A;  1VIS A;  2XEX A;  4DR6 E;  1EI1 A;  4LF8 I;  4JI5 E;  2C39 B;  2GO4 A;  3P06 A;  2UUB E;  2BA1 D;  4DUZ I;  4QNJ A;  4LF7 E;  4X62 I;  1XNQ I;  4LFB E;  1HNZ I;  3PYF A;  2NN6 A;  1Z5A A;  4GKK I;  2EFG A;  1Z0W A;  4UT4 A;  1Z0B A;  5LMN I;  4DR7 I;  1XMO I;  4IS9 A;  4R1F A;  4IFD F;  4KHP I;  1Z0V A;  3J81 Q;  3QT5 A;  2WP8 A;  4DV7 I;  2O1V A;  2J7K A;  4DV6 I;  1ZXN A;  1J5E E;  5C0X B;  4MYU A;  3JAM Q;  4DPW A;  1B62 A;  4NXN E;  2UXC E;  2BM0 A;  2UUC I;  4FN5 A;  5C0X D;  4JI2 I;  4DR4 E;  3J80 Q;  4ISA A;  1UEK A;  2F4V E;  2PO0 A;  1BKN A;  3WU4 A;  5C0X E;  2R3V A;  3PS1 A;  4B3R I;  4DR5 E;  4OO1 B;  3QT7 A;  1FJG E;  4HXZ A;  4GKJ E;  4LOM A;  5FLX Q;  1DAR A;  1I94 E;  1YH8 A;  4PRV A;  4DU8 A;  1HNW I;  1N32 I;  4UTG A;  1E3H A;  4GQU A;  4FW7 A;  2X36 A;  3PYG A;  1Y60 A;  4LFC E;  4OO1 D;  2A2C A;  5LMU I;  2JEA A;  4IZJ B;  1N36 E;  4BA1 B;  4YY3 E;  1KKH A;  2VES A;  4JI8 E;  5C0X F;  4OO1 E;  5JEA C;  3T1Y E;  3U1Y A;  4OZE A;  2E5L E;  4DR2 E;  5DRQ A;  3J7A M;  5FLX C;  1KIJ A;  1FWK A;  2ZIT A;  2IER A;  3LNU A;  3Q6N A;  2PNM A;  3T1H E;  1NHI A;  4XTJ A;  4JV5 I;  2J65 A;  3P3E A;  4K0K I;  5DNL A;  4X66 E;  1IBL E;  4OX9 E;  2CGE A;  4EMD A;  1XHK A;  4DR3 I;  4OO1 F;  1ZXM A;  4JI5 I;  2UUB I;  4LF4 E;  5A2Q C;  4AIM A;  3M6A A;  4LF6 I;  1Y4S A;  1KVK A;  1FI4 A;  4WUD A;  1NZ0 A;  4FW9 A;  4DV4 E;  4WUB A;  3V2U C;  2AJ4 A;  5K36 D;  3K85 A;  4LCF A;  4JI7 E;  2HK2 A;  4MU1 A;  3Q6M A;  3B4T A;  5K36 B;  5LL6 R;  4IFD D;  4JYA E;  5K36 E;  3ZKD A;  2ZM6 I;  4DV1 E;  4IZK A;  2X7I A;  3ZZ0 A;  2BA1 G;  4P7A A;  1P42 A;  1RR9 A;  3KRN A;  4IFD E;  2HK3 A;  5JEA B;  2CG9 A;  4FW6 A;  1IBK E;  2NN6 B;  3HKM A;  4JI0 E;  1NHJ A;  4FW3 A;  1PVG A;  3P76 A;  2GQ0 A;  4YHH E;  4DV2 E;  4MU4 A;  4NXN I;  2DEJ A;  1IBM E;  2JT2 A;  4LF9 I;  3ZZU A;  2WP8 B;  3GON A;  3HUL A;  3WU6 A;  1N0V C;  5DRR A;  5K36 F;  2V8P A;  3PRY A;  5JEA A;  4LFA E;  3QT8 A;  5IWA E;  3HJC A;  4DV0 E;  1OJ4 A;  4MYT A;  4JI4 I;  1Z5C A;  4KQV A;  4MDT A;  1USU A;  1D6T A;  4B3M E;  2UU9 E;  5FWK A;  4AQY I;  4DU7 A;  1WUU A;  4DV5 E;  4B3T I;  2PO0 B;  4MQY A;  3J7A G;  4JI1 I;  3ZM7 A;  1N33 I;  4Z7Y A;  1N0U A;  1XXE A;  4DUY I;  4BA2 B;  2NN6 F;  3PS2 A;  4LF5 E;  5BR8 E;  1XNR E;  5GME A;  4X64 E;  4HYM A;  2VQE E;  3T1H I;  2UXB E;  2UXD I;  3GCM A;  1OYS A;  2HFU A;  2ZBK B;  2JEA B;  3L7Z A;  1Z59 A;  5GMD A;  4BA2 A;  1ZM4 A;  4X66 I;  4LF8 E;  1R6M A;  3M7N D;  4LFB I;  4U3B A;  1XNQ E;  3P3G A;  1HNX I;  1HNZ E;  2PNZ A;  5K36 C;  2VQF I;  4P52 A;  2UUA E;  1N34 I;  2HKJ A;  4GKK E;  4LF4 I;  3Q1Q A;  4DR1 I;  4J3D A;  5LMN E;  4DR7 E;  2JE6 B;  3WU5 A;  1XMO E;  4B3S I;  4KHP E;  2BM1 A;  4IFD C;  3DD6 A;  4JI3 I;  3B82 A;  2E1R A;  5IT9 C;  1QZR A;  5A2Q Q;  2O1U A;  2WW4 A;  1U2R A;  4DPU A;  4X65 I;  4MU0 A;  3CWV A;  4IZJ D;  1H73 A;  3H4L A;  2JE6 A;  3P3C A;  4JI6 I;  2LJP A;  3M85 D;  1H72 C;  2OI2 A;  1HR0 I;  3OTO I;  4ZVI A;  2R42 A;  1H7S A;  2PNL A;  1Y5Y A;  2UUC E;  2BA0 D;  4JI2 E;  4DR6 I;  2GO3 A;  4DPY A;  4PU9 A;  4IZK B;  1PIE A;  4LF7 I;  4WUC A;  2AE8 A;  2Q2E B;  2Z5E A;  2PO1 B;  4B3R E;  3CDJ A;  4URL A;  2F1D A;  5IWA I;  4DV0 I;  2A2D A;  1ELO A;  1HNW E;  1ZM3 A;  2HFS A;  2C38 B;  1S16 A;  1N32 E;  4DV3 E;  2HKE A;  2NPF A;  2Z5B A;  4AM3 A;  5EL9 A;  2VF3 A;  2PO1 A;  5LMU E;  1J5E I;  2O1W A;  4MU3 A;  5C0X C;  5K36 A;  2C38 A;  3GLL A;  1YHC A;  4FWH A;  2UXC I;  3QT6 A;  2O1T A;  3V5R A;  2CZ9 A;  4IFD A;  5JEA D;  1K47 A;  4DR4 I;  2NN6 D;  4FWD A;  1S4E A;  3PYE A;  1MU5 A;  1ZM2 A;  5BR8 I;  1XMQ E;  2F4V I;  4AID A;  1RHY A;  4JV5 E;  4K0K E;  3U1K A;  4JG4 A;  5JEA E;  3PYD A;  3UHM A;  2NN6 E;  3WU3 A;  3ZKB A;  4DR5 I;  4I3H A;  1FJG I;  4DR3 E;  2CVE A;  4GKJ I;  4Z7C A;  1UDQ A;  4OO1 C;  1I94 I;  2IES A;  2IOP A;  4FW5 A;  4LF6 E;  3F0N A;  2BR2 A;  4M1K A;  2HHH E;  4LFC I;  2UUA I;  1OYP A;  2V2Q A;  2BV3 A;  2Z5C A;  1USV A;  2IOQ A;  1RRE A;  4NBQ A;  1N36 I;  1OYR A;  4U3D A;  3L7Z B;  4NXM E;  4HY1 A;  3NZK A;  4YY3 I;  2ZM6 E;  3M7N G;  4JI8 I;  5JEA F;  2C39 A;  3T1Y I;  3H1C A;  4QNK A;  2E5L I;  4DR2 I;  2PNZ B;  5IT9 Q;  1FNM A;  2DEI A;  5L3J A;  2C37 B;  3GME A;  5ELW A;  3K17 A;  1IBL I;  1EA6 A;  4LF9 E;  1E3P A;  4DUZ E;  4OX9 I;  4X62 E;  4USK A;  1B63 A;  5C0X A;  3J81 C;  2C37 A;  4HAC B;  5DRP A;  3M85 G;  4JI4 E;  4DV4 I;  2GS8 A;  4DXL A;  4JI7 I;  1UDN A;  4DV7 E;  1Z0G A;  1A6F A;  2BA0 G;  1H74 A;  3JAM C;  4DV6 E;  1Z0T A;  3K1J A;  4JYA I;  4DV1 I;  4DV3 I;  1KTV A;  4HAC A;  2WNR B;  4AQY E;  4B3T E;  5DRO A;  4ED4 A;  2JEB B;  4OO1 A;  2V2Z A;  2V34 A;  3J80 C;  4JI1 E;  1IBK I;  1N33 E;  4DUY E;  4FW4 A;  4JI0 I;  1Z5B A;  4YHH I;  1Z0C A;  1R6L A;  4DV2 I;  2PO2 B;  1UDO A;  2NN6 C;  1MG7 A;  1IBM I;  2WNR A;  1Z0E A;  3LTO A;  2Z5B B;  1NHH A;  4PRX A;  4N3O A;  3D4J A;  2O3Z A;  2JEB A;  4LFA I;  2UXD E;  4IZJ A;  1XMQ I;  4BA1 A;  3ZZT A;  2PO2 A; 
#chains in the Genus database with same CATH homology
 5EKW A;  4QNK A;  4MU3 A;  2AE8 A;  1RHY A;  4LOM A;  4GQU A;  5DNX A;  5ELW A;  4LPF A;  4MU1 A;  4QNJ A;  5EL9 A;  5DNL A;  2F1D A;  4MU0 A;  4MU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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