5EL9A

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 64
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A02
1RHYA 2F1DA 4MU0A 4MU4A 4MU3A 5EL9A 4LPFA 5DNLA 4GQUA 4MU1A 4QNJA 5DNXA 5ELWA 4LOMA 4QNKA 5EKWA 2AE8A
chains in the Genus database with same CATH superfamily
2Q2EB 4DUZI 2DEIA 2BA1D 4JI6E 2GS8A 1IBKI 4USMA 3B82A 4DUYE 2UUBI 4JI3I 3GMEA 1RREA 4DR3I 1H73A 4DR7I 2CZ9A 4GKJI 1Z0VA 3LTOA 4DV4I 1FWLA 2UU9E 3WU5A 4X62E 4QNJA 2Z5BA 4QNKA 2HHHI 1RR9A 1HR0E 1ZM4A 4LF9E 2NN6A 5BR8I 1D6TA 2UXDI 1N36I 2NN6F 1MX0A 2C39A 2CVEA 2WP8A 4WUCA 4YY3E 2E5LE 5IWAI 1XMOE 2O1UA 4B3SI 2UXBI 2PO1A 3M7ND 2GO4A 5DNLA 4DR6I 2C38B 4JI5I 3HKMA 4OKGA 2PNZB 5EKWA 4LF8I 4B3ME 4JI7I 3J80Q 2HKEA 4IFDA 4JYAE 3T1HI 4IFDF 1PVGA 2R3VA 1UDSA 3OTOI 5C0XE 4DR1I 1NZ0A 1MG7A 3KRNA 1N34E 4JI8E 1HNZI 4X65I 5A2QQ 2CGEA 4FW6A 1FJGE 4FW7A 1J5EI 1NHJA 2VQFI 2NN6B 1UEKA 3Q6MA 2WP8B 4OO1C 3JAMQ 5C0XD 2HKJA 4DV3E 4LPFA 4U3BA 2UXCE 4X64I 3LNUA 4GQUA 4DV5E 4DR4I 4B3RE 2UUCE 4P52A 1IBMI 1Z59A 4IFDB 1XNRI 1FKAE 3B8HA 4DV6I 5K36C 4JI0E 2V8PA 4AQYE 5DROA 2WNRB 1USUA 4JI6I 4GKKE 1N0UA 2Z5EA 1N0VC 1Y60A 4MQYA 1USVA 2O1VA 4DXLA 4DUYI 5A2QC 1KVKA 3QT7A 2X36A 4EMDA 3J81C 3P76A 1VISA 4IZKA 4X62I 3L7ZA 1VI7A 2LJPA 3M85G 4FWGA 4OX9E 1Z0TA 4DV0E 4HACB 1Y5YA 4LF4E 1OYRA 3PS2A 2UUAE 4LF6E 3ZKBA 4NXMI 4OZEA 3U1KA 5LMUI 4RPFA 4ZVIA 4HYMA 2IOQA 3DD6A 5GMEA 4MDTA 4ED4A 2AE8A 4Z7CA 1HNWI 4B3TE 4B3MI 2F1DA 5C0XA 1E3PA 5C0XF 2J65A 2Z5CA 1RHYA 4IZJB 4YHHE 4MU0A 1Z5CA 1IBLE 4LCHA 5JEAE 4DV7E 2BM0A 3GLLA 5IT9C 1N34I 4K0KE 2E1RA 3J7AG 3ZZTA 4LF5I 1I94E 4IZKB 1ZM3A 3L7ZB 4OO1D 1FJGI 3J7AM 3V2UC 1S4EA 2PO0A 1UDQA 4JI2E 5ELWA 5DNXA 5FWKA 4DV2I 2PNMA 3NZKA 5JEAD 1NHIA 4DV3I 4NXNE 3T1YI 3F0NA 2VQEE 2UXCI 3M7NG 2BA0D 4P7AA 4DV1E 1N33E 3H4LA 1YHCA 1UDOA 5K36D 2UUCI 5C0XB 4MYUA 5EL9A 1U2RA 3P3EA 2ZM6E 4JI0I 1FNMA 4IFDC 4BA1A 2ZBKB 1MU5A 4DR5E 4FWDA 4GKKI 4LFCI 2WW4A 2CG9A 1PKPA 1R6LA 4LOMA 3J81Q 2Z5BB 1XMQE 1N32E 2HK2A 2DEJA 3Q1QA 4BA2A 2F4VI 3CDIA 2C39B 5GMDA 4OX9I 4XTJA 2PO0B 4UT4A 4DV0I 4DR3E 4LF4I 1PIEA 2PO1B 2J7KA 3ZZ0A 3PS1A 4LCFA 4X66E 5DRPA 3HJCA 2UXDE 4OO1A 1N36E 2PO2A 2JEAA 3WU6A 4OO1F 4DR2I 1XHKA 4WUBA 2V34A 5LMNI 4B3TI 1Z5BA 4B3SE 3WU3A 2UXBE 3QT8A 5JEAA 1EI1A 5JEAF 4FW5A 5DRRA 3K1JA 3Q6NA 4JI4E 2O1TA 4DU7A 5IT9Q 4DPUA 4LF8E 4DV7I 4LFBE 3H1CA 1KKHA 4JI1E 4KHPE 3D4JA 5K36A 4KQVA 5K36F 1YH8A 3T1HE 2UU9I 1FWKA 3UHMA 1EA6A 1Y4UA 3PYDA 1R6MA 3OTOE 4USKA 3CDJA 1HR0I 4BA2B 4LF9I 2EFGA 4R1FA 1Y6ZA 4YY3I 2E5LI 1XMOI 1ZXMA 1HNZE 2HK3A 4U3DA 1Z0BA 5DRQA 1FI4A 4DU8A 4JV5E 4WUDA 3PRYA 3PYGA 2VESA 3PYFA 1OYSA 2VQFE 4AM3A 3PS3A 4DV1I 1BKNA 4N3OA 1H72C 2IOPA 4OO1E 4MU1A 4JG4A 1B62A 4MYTA 4JYAI 1ZM2A 4Z7YA 4FN5A 5JEAB 4LCGA 3QT5A 5C0XC 1Z0EA 2ZM6I 3CWVA 2BA1G 4PRXA 2BM1A 2ZITA 4ISAA 4DR4E 4DR5I 2GO3A 1H7UA 4JI8I 4LFAE 4AIDA 1XNRE 5K36E 3M6AA 1XMQI 1N32I 2JEBA 2NN6C 3K85A 1K47A 2BR2A 3QT6A 1E3HA 1ZXNA 3GONA 2HFSA 2V2QA 2C37A 4X66I 2XEXA 4DV5I 2AJ4A 4PRVA 4B3RI 1KTVA 4LF7E 4I3HA 2BA0G 1HNXE 3K17A 3U1YA 2Z5CB 1UDNA 2JT2A 4NXME 4AQYI 5LMUE 3PYEA 4IZJD 1NHHA 3ZKDA 1XNQE 3P3GA 4JI4I 2O3ZA 4MU3A 2R42A 4FW9A 4NBQA 1HNWE 4LFBI 2PNLA 4JI1I 3WU4A 5FLXQ 4KHPI 1KIJA 4DUZE 1Z0WA 2WNRA 1IBKE 4PU9A 4URLA 4IS9A 2JEBB 1H74A 2UUBE 4JI3E 4DR7E 4GKJE 4HY1A 4DV4E 1Z5AA 2BR2B 2UUAI 4FW3A 1H7SA 4LF6I 2IESA 4JV5I 1OYPA 2HHHE 4LF5E 3B78A 1Z0GA 5BR8E 2IERA 3ZZUA 2C37B 1ELOA 4J3DA 1HK7A 5IWAE 2NN6E 4HACA 1P42A 4DV2E 2JE6A 4FWHA 1XXEA 5LL6R 4FW4A 4BA1B 3T1YE 2OI2A 4DR6E 1Y4SA 4YHHI 4JI5E 2NPFA 1IBLI 1QZRA 5JEAC 1DARA 3P3CA 4JI7E 5L3JA 5FLXC 3J80C 3P06A 4K0KI 2VF3A 4LFAI 2V2ZA 3HULA 1B63A 4DR1E 4DPTA 1I94I 4IFDE 2NN6D 4IZJA 4M1KA 1S16A 3ZM7A 4LFCE 2X7IA 2V2VA 1A6FA 2BV3A 4X65E 4JI2I 4AIMA 4UTGA 2A2DA 3GCMA 3V5RA 4NXNI 1J5EE 2GQ0A 3M85D 2HFUA 2VQEI 2F4VE 4MU4A 4OO1B 2PO2B 2JEAB 1N33I 4HXZA 1WUUA 4IFDD 4LF7I 1HNXI 3JAMC 1Z0CA 2JE6B 4DPYA 3B4TA 2O1WA 3LPSA 4X64E 2A2CA 2C38A 2PNZA 1IBME 1XNQI 1OJ4A 1ZM9A 5K36B 4DPXA 4DR2E 4DV6E 5LMNE 4DPWA
chains in the Genus database with same CATH topology
1RHYA 2F1DA 4MU0A 4MU4A 4MU3A 5EL9A 4LPFA 5DNLA 4GQUA 4MU1A 4QNJA 5DNXA 5ELWA 4LOMA 4QNKA 5EKWA 2AE8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RHY A;  2F1D A;  4MU0 A;  4MU4 A;  4MU3 A;  5EL9 A;  4LPF A;  5DNL A;  4GQU A;  4MU1 A;  4QNJ A;  5DNX A;  5ELW A;  4LOM A;  4QNK A;  5EKW A;  2AE8 A; 
#chains in the Genus database with same CATH topology
 2Q2E B;  4DUZ I;  2DEI A;  2BA1 D;  4JI6 E;  2GS8 A;  1IBK I;  4USM A;  3B82 A;  4DUY E;  2UUB I;  4JI3 I;  3GME A;  1RRE A;  4DR3 I;  1H73 A;  4DR7 I;  2CZ9 A;  4GKJ I;  1Z0V A;  3LTO A;  4DV4 I;  1FWL A;  2UU9 E;  3WU5 A;  4X62 E;  4QNJ A;  2Z5B A;  4QNK A;  2HHH I;  1RR9 A;  1HR0 E;  1ZM4 A;  4LF9 E;  2NN6 A;  5BR8 I;  1D6T A;  2UXD I;  1N36 I;  2NN6 F;  1MX0 A;  2C39 A;  2CVE A;  2WP8 A;  4WUC A;  4YY3 E;  2E5L E;  5IWA I;  1XMO E;  2O1U A;  4B3S I;  2UXB I;  2PO1 A;  3M7N D;  2GO4 A;  5DNL A;  4DR6 I;  2C38 B;  4JI5 I;  3HKM A;  4OKG A;  2PNZ B;  5EKW A;  4LF8 I;  4B3M E;  4JI7 I;  3J80 Q;  2HKE A;  4IFD A;  4JYA E;  3T1H I;  4IFD F;  1PVG A;  2R3V A;  1UDS A;  3OTO I;  5C0X E;  4DR1 I;  1NZ0 A;  1MG7 A;  3KRN A;  1N34 E;  4JI8 E;  1HNZ I;  4X65 I;  5A2Q Q;  2CGE A;  4FW6 A;  1FJG E;  4FW7 A;  1J5E I;  1NHJ A;  2VQF I;  2NN6 B;  1UEK A;  3Q6M A;  2WP8 B;  4OO1 C;  3JAM Q;  5C0X D;  2HKJ A;  4DV3 E;  4LPF A;  4U3B A;  2UXC E;  4X64 I;  3LNU A;  4GQU A;  4DV5 E;  4DR4 I;  4B3R E;  2UUC E;  4P52 A;  1IBM I;  1Z59 A;  4IFD B;  1XNR I;  1FKA E;  3B8H A;  4DV6 I;  5K36 C;  4JI0 E;  2V8P A;  4AQY E;  5DRO A;  2WNR B;  1USU A;  4JI6 I;  4GKK E;  1N0U A;  2Z5E A;  1N0V C;  1Y60 A;  4MQY A;  1USV A;  2O1V A;  4DXL A;  4DUY I;  5A2Q C;  1KVK A;  3QT7 A;  2X36 A;  4EMD A;  3J81 C;  3P76 A;  1VIS A;  4IZK A;  4X62 I;  3L7Z A;  1VI7 A;  2LJP A;  3M85 G;  4FWG A;  4OX9 E;  1Z0T A;  4DV0 E;  4HAC B;  1Y5Y A;  4LF4 E;  1OYR A;  3PS2 A;  2UUA E;  4LF6 E;  3ZKB A;  4NXM I;  4OZE A;  3U1K A;  5LMU I;  4RPF A;  4ZVI A;  4HYM A;  2IOQ A;  3DD6 A;  5GME A;  4MDT A;  4ED4 A;  2AE8 A;  4Z7C A;  1HNW I;  4B3T E;  4B3M I;  2F1D A;  5C0X A;  1E3P A;  5C0X F;  2J65 A;  2Z5C A;  1RHY A;  4IZJ B;  4YHH E;  4MU0 A;  1Z5C A;  1IBL E;  4LCH A;  5JEA E;  4DV7 E;  2BM0 A;  3GLL A;  5IT9 C;  1N34 I;  4K0K E;  2E1R A;  3J7A G;  3ZZT A;  4LF5 I;  1I94 E;  4IZK B;  1ZM3 A;  3L7Z B;  4OO1 D;  1FJG I;  3J7A M;  3V2U C;  1S4E A;  2PO0 A;  1UDQ A;  4JI2 E;  5ELW A;  5DNX A;  5FWK A;  4DV2 I;  2PNM A;  3NZK A;  5JEA D;  1NHI A;  4DV3 I;  4NXN E;  3T1Y I;  3F0N A;  2VQE E;  2UXC I;  3M7N G;  2BA0 D;  4P7A A;  4DV1 E;  1N33 E;  3H4L A;  1YHC A;  1UDO A;  5K36 D;  2UUC I;  5C0X B;  4MYU A;  5EL9 A;  1U2R A;  3P3E A;  2ZM6 E;  4JI0 I;  1FNM A;  4IFD C;  4BA1 A;  2ZBK B;  1MU5 A;  4DR5 E;  4FWD A;  4GKK I;  4LFC I;  2WW4 A;  2CG9 A;  1PKP A;  1R6L A;  4LOM A;  3J81 Q;  2Z5B B;  1XMQ E;  1N32 E;  2HK2 A;  2DEJ A;  3Q1Q A;  4BA2 A;  2F4V I;  3CDI A;  2C39 B;  5GMD A;  4OX9 I;  4XTJ A;  2PO0 B;  4UT4 A;  4DV0 I;  4DR3 E;  4LF4 I;  1PIE A;  2PO1 B;  2J7K A;  3ZZ0 A;  3PS1 A;  4LCF A;  4X66 E;  5DRP A;  3HJC A;  2UXD E;  4OO1 A;  1N36 E;  2PO2 A;  2JEA A;  3WU6 A;  4OO1 F;  4DR2 I;  1XHK A;  4WUB A;  2V34 A;  5LMN I;  4B3T I;  1Z5B A;  4B3S E;  3WU3 A;  2UXB E;  3QT8 A;  5JEA A;  1EI1 A;  5JEA F;  4FW5 A;  5DRR A;  3K1J A;  3Q6N A;  4JI4 E;  2O1T A;  4DU7 A;  5IT9 Q;  4DPU A;  4LF8 E;  4DV7 I;  4LFB E;  3H1C A;  1KKH A;  4JI1 E;  4KHP E;  3D4J A;  5K36 A;  4KQV A;  5K36 F;  1YH8 A;  3T1H E;  2UU9 I;  1FWK A;  3UHM A;  1EA6 A;  1Y4U A;  3PYD A;  1R6M A;  3OTO E;  4USK A;  3CDJ A;  1HR0 I;  4BA2 B;  4LF9 I;  2EFG A;  4R1F A;  1Y6Z A;  4YY3 I;  2E5L I;  1XMO I;  1ZXM A;  1HNZ E;  2HK3 A;  4U3D A;  1Z0B A;  5DRQ A;  1FI4 A;  4DU8 A;  4JV5 E;  4WUD A;  3PRY A;  3PYG A;  2VES A;  3PYF A;  1OYS A;  2VQF E;  4AM3 A;  3PS3 A;  4DV1 I;  1BKN A;  4N3O A;  1H72 C;  2IOP A;  4OO1 E;  4MU1 A;  4JG4 A;  1B62 A;  4MYT A;  4JYA I;  1ZM2 A;  4Z7Y A;  4FN5 A;  5JEA B;  4LCG A;  3QT5 A;  5C0X C;  1Z0E A;  2ZM6 I;  3CWV A;  2BA1 G;  4PRX A;  2BM1 A;  2ZIT A;  4ISA A;  4DR4 E;  4DR5 I;  2GO3 A;  1H7U A;  4JI8 I;  4LFA E;  4AID A;  1XNR E;  5K36 E;  3M6A A;  1XMQ I;  1N32 I;  2JEB A;  2NN6 C;  3K85 A;  1K47 A;  2BR2 A;  3QT6 A;  1E3H A;  1ZXN A;  3GON A;  2HFS A;  2V2Q A;  2C37 A;  4X66 I;  2XEX A;  4DV5 I;  2AJ4 A;  4PRV A;  4B3R I;  1KTV A;  4LF7 E;  4I3H A;  2BA0 G;  1HNX E;  3K17 A;  3U1Y A;  2Z5C B;  1UDN A;  2JT2 A;  4NXM E;  4AQY I;  5LMU E;  3PYE A;  4IZJ D;  1NHH A;  3ZKD A;  1XNQ E;  3P3G A;  4JI4 I;  2O3Z A;  4MU3 A;  2R42 A;  4FW9 A;  4NBQ A;  1HNW E;  4LFB I;  2PNL A;  4JI1 I;  3WU4 A;  5FLX Q;  4KHP I;  1KIJ A;  4DUZ E;  1Z0W A;  2WNR A;  1IBK E;  4PU9 A;  4URL A;  4IS9 A;  2JEB B;  1H74 A;  2UUB E;  4JI3 E;  4DR7 E;  4GKJ E;  4HY1 A;  4DV4 E;  1Z5A A;  2BR2 B;  2UUA I;  4FW3 A;  1H7S A;  4LF6 I;  2IES A;  4JV5 I;  1OYP A;  2HHH E;  4LF5 E;  3B78 A;  1Z0G A;  5BR8 E;  2IER A;  3ZZU A;  2C37 B;  1ELO A;  4J3D A;  1HK7 A;  5IWA E;  2NN6 E;  4HAC A;  1P42 A;  4DV2 E;  2JE6 A;  4FWH A;  1XXE A;  5LL6 R;  4FW4 A;  4BA1 B;  3T1Y E;  2OI2 A;  4DR6 E;  1Y4S A;  4YHH I;  4JI5 E;  2NPF A;  1IBL I;  1QZR A;  5JEA C;  1DAR A;  3P3C A;  4JI7 E;  5L3J A;  5FLX C;  3J80 C;  3P06 A;  4K0K I;  2VF3 A;  4LFA I;  2V2Z A;  3HUL A;  1B63 A;  4DR1 E;  4DPT A;  1I94 I;  4IFD E;  2NN6 D;  4IZJ A;  4M1K A;  1S16 A;  3ZM7 A;  4LFC E;  2X7I A;  2V2V A;  1A6F A;  2BV3 A;  4X65 E;  4JI2 I;  4AIM A;  4UTG A;  2A2D A;  3GCM A;  3V5R A;  4NXN I;  1J5E E;  2GQ0 A;  3M85 D;  2HFU A;  2VQE I;  2F4V E;  4MU4 A;  4OO1 B;  2PO2 B;  2JEA B;  1N33 I;  4HXZ A;  1WUU A;  4IFD D;  4LF7 I;  1HNX I;  3JAM C;  1Z0C A;  2JE6 B;  4DPY A;  3B4T A;  2O1W A;  3LPS A;  4X64 E;  2A2C A;  2C38 A;  2PNZ A;  1IBM E;  1XNQ I;  1OJ4 A;  1ZM9 A;  5K36 B;  4DPX A;  4DR2 E;  4DV6 E;  5LMN E;  4DPW A; 
#chains in the Genus database with same CATH homology
 1RHY A;  2F1D A;  4MU0 A;  4MU4 A;  4MU3 A;  5EL9 A;  4LPF A;  5DNL A;  4GQU A;  4MU1 A;  4QNJ A;  5DNX A;  5ELW A;  4LOM A;  4QNK A;  5EKW A;  2AE8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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