5EL9A

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Arabidopsis thaliana
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 64
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A02
4QNJA 4GQUA 5EKWA 2AE8A 1RHYA 5DNLA 4QNKA 5EL9A 5ELWA 4LPFA 4MU1A 4MU0A 2F1DA 4MU3A 4LOMA 4MU4A 5DNXA
chains in the Genus database with same CATH superfamily
5DROA 1MG7A 1YHCA 2HFUA 4YHHI 1NHIA 3T1HE 3ZZTA 3ZKDA 1FKAE 4IFDC 2UUCI 5ELWA 4YHHE 5JEAF 4MU3A 2UXCI 1ZM9A 4B3RI 4USMA 5FWKA 4JI1I 5LMUI 2UUCE 1UEKA 1S4EA 2HHHI 2UXCE 1MX0A 1R6MA 3ZZ0A 4B3RE 4JI3I 3LNUA 4JI1E 4JG4A 5LMUE 3V2UC 4LF6E 3WU5A 4AM3A 2WP8B 2HHHE 5FLXQ 2BR2A 4YY3I 4JI3E 2PO0B 2V34A 5K36C 2NN6D 3PS3A 4YY3E 3K1JA 2C39B 3L7ZA 4JI0I 1FJGI 1OYPA 2Z5CB 1USUA 2JT2A 4JI0E 2UXDI 1FI4A 4MDTA 4DV2I 2UUAI 1FJGE 2UXDE 4LCGA 2C37A 2UUAE 1RHYA 4LOMA 4LF5I 3V5RA 5JEAD 5EL9A 4DV6I 3Q1QA 2Q2EB 4LF5E 4U3BA 5C0XF 4ISAA 4DR4I 4DV6E 2DEJA 3B82A 2BA1G 2UU9I 4RPFA 4OO1B 4DR4E 2V8PA 2BA0G 4HACB 2PNMA 3QT5A 4USKA 2PO1B 2UU9E 2GS8A 2O1WA 2WP8A 2J7KA 3U1YA 2PNZA 2PO0A 1Z59A 4DPWA 4P7AA 4MQYA 2BM1A 4KHPI 4GKKI 1Y6ZA 4U3DA 4IS9A 4KHPE 4XTJA 3B78A 1H7SA 3M6AA 4Z7CA 3Q6NA 1D6TA 4GKKE 3M85D 2BM0A 1UDOA 3P06A 1E3PA 1ZM4A 1YH8A 2E1RA 2Z5BB 3K85A 3H4LA 4DR5I 4X64I 3JAMC 5C0XA 4WUCA 4B3SI 3PYGA 4DUZI 4DR5E 1EI1A 4X64E 5C0XD 3KRNA 4B3SE 2R3VA 4DUZE 3QT7A 2HKEA 5A2QC 5JEAC 3P3CA 3P3GA 1ZXNA 1IBLI 1PVGA 3PS2A 4JI4I 5GMDA 1A6FA 4OO1A 1IBLE 4FW5A 4HACA 5DNLA 3Q6MA 4JI2I 4ED4A 4JI4E 4LPFA 5DRQA 1UDNA 4DR1I 5C0XE 1UDQA 1VISA 2XEXA 1B63A 4DR1E 3ZM7A 2UXBI 4B3TI 1U2RA 2O1TA 1PIEA 4GKJI 4X65I 1J5EI 4MU4A 2UXBE 4B3TE 4IZKB 4FW3A 4GKJE 3DD6A 4X65E 4FWHA 1J5EE 4OO1E 3OTOI 5IT9C 4DR2I 3HKMA 1H72C 3PYDA 1E3HA 1RR9A 4DPXA 3OTOE 2WW4A 2VESA 2Z5BA 4DU8A 4DR2E 3GONA 4IFDB 2DEIA 4OKGA 1S16A 3P76A 4AQYI 4DV1I 4HXZA 4B3MI 1Z0VA 1Y4UA 2GQ0A 4PRVA 2GO3A 4K0KI 1XXEA 5C0XC 4MU1A 4AQYE 3UHMA 4DV1E 4B3ME 2LJPA 1FWKA 4FWDA 2AJ4A 4DV2E 1Z0CA 4K0KE 1P42A 4FN5A 2ZM6I 2BV3A 1BKNA 4N3OA 3JAMQ 4OX9I 2ZM6E 2V2QA 5K36B 4BA2B 3J7AM 4DV0I 2JE6B 3J80C 1Y4SA 4OX9E 1H7UA 4JI7I 5A2QQ 1ZM3A 4IZJB 4DV0E 3GLLA 2HK3A 4JI7E 2PO2B 5L3JA 5IWAI 2Z5EA 4IZKA 1ZM2A 2HKJA 1ZXMA 1KIJA 2F4VI 1HNZI 2JEBB 4LFBI 5IWAE 4DPUA 2J65A 4OO1F 3WU3A 4FW9A 2F4VE 2A2CA 1HNZE 1VI7A 4LFBE 2IOQA 4URLA 2C39A 1N36I 4ZVIA 1N33I 2X7IA 4R1FA 2Z5CA 1N36E 4MU0A 4LCHA 1NHJA 5IT9Q 1XMQI 4WUDA 3U1KA 1HK7A 1UDSA 2IOPA 1XMQE 3ZZUA 1Z0EA 1Z0WA 4NXMI 5DRRA 2UUBI 4DV5I 4FW4A 1RREA 2VQFI 2O1UA 4FW7A 4NXME 2CGEA 2UUBE 4DV5E 4UTGA 5DNXA 2JE6A 2VQFE 2BR2B 2NN6B 4Z7YA 2HK2A 4IZJA 4JI8I 3H1CA 2JEAB 3L7ZB 4JI8E 2WNRB 3B4TA 2PO1A 2NN6F 4OO1D 3NZKA 3CWVA 1HNWI 4M1KA 2AE8A 4JI2E 2JEBA 4X62I 3J80Q 4HYMA 1HNWE 4HY1A 2V2VA 4NBQA 4LFCI 2VQEI 1KKHA 3F0NA 4X62E 3GCMA 1MU5A 3J81C 2C37B 4PRXA 1FNMA 3J7AG 4LFCE 4I3HA 2VQEE 1EA6A 5JEAB 3M85G 1XNQI 4LF9I 3LTOA 3HULA 1DARA 1HR0I 3QT8A 1XNQE 1OYRA 4LF9E 4DPTA 5BR8I 1QZRA 4KQVA 1B62A 1HR0E 1USVA 1KTVA 5BR8E 2BA1D 4LF6I 3P3EA 4MYUA 1H73A 2BA0D 3QT6A 4OZEA 4AIDA 4DR3I 2X36A 4DPYA 2PNZB 2NN6A 4IFDF 4DUYI 4X66I 4DR3E 4LCFA 3WU6A 4QNKA 1N0VC 1I94I 4LF4I 2HFSA 2C38B 2JEAA 4GQUA 3LPSA 4X66E 4DUYE 1Z5CA 4JI5I 1OYSA 2WNRA 4JV5I 1Z5BA 1I94E 4LF4E 4DV4I 2A2DA 1N0UA 4JI5E 4OO1C 4JV5E 4WUBA 4DV4E 4AIMA 1Z0TA 2OI2A 3ZKBA 4NXNI 5K36F 2NN6E 3HJCA 1R6LA 4JI6I 4QNJA 4BA1B 5C0XB 1XHKA 4NXNE 5JEAA 3K17A 2GO4A 2R42A 4JI6E 3PYEA 3B8HA 3PS1A 3PRYA 3M7ND 4DV3I 3J81Q 2CZ9A 2ZBKB 2EFGA 4DV3E 5GMEA 4IFDA 1N32I 4IFDD 2IERA 4J3DA 4DV7I 4DR7I 5FLXC 1Y60A 1N33E 5JEAE 1N32E 1XNRI 2V2ZA 4DV7E 4DR7E 1Y5YA 5EKWA 1NHHA 2E5LI 1XNRE 2C38A 3GMEA 4LF8I 3T1YI 2NN6C 2CG9A 2CVEA 2E5LE 1WUUA 1N34I 2IESA 5K36A 4DU7A 5DRPA 4BA2A 4DR6I 5LL6R 4LF8E 1NZ0A 4IFDE 3T1YE 4JYAI 1FWLA 5K36D 4FWGA 1ELOA 1N34E 2VF3A 1PKPA 1Z0GA 4DR6E 4DXLA 1IBMI 1H74A 4JYAE 1XMOI 3PYFA 1HNXI 1Z0BA 4LFAI 4IZJD 3CDIA 4UT4A 2F1DA 2PO2A 5LMNI 1IBME 4BA1A 4MYTA 4FW6A 1XMOE 1HNXE 4LF7I 4LFAE 4EMDA 3D4JA 1IBKI 5LMNE 2PNLA 2O3ZA 3WU4A 3CDJA 4LF7E 2O1VA 2ZITA 3M7NG 5K36E 1KVKA 1IBKE 1Z5AA 2NPFA 4P52A 1OJ4A 1K47A 4PU9A 3T1HI
chains in the Genus database with same CATH topology
4QNJA 4GQUA 5EKWA 2AE8A 1RHYA 5DNLA 4QNKA 5EL9A 5ELWA 4LPFA 4MU1A 4MU0A 2F1DA 4MU3A 4LOMA 4MU4A 5DNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNJ A;  4GQU A;  5EKW A;  2AE8 A;  1RHY A;  5DNL A;  4QNK A;  5EL9 A;  5ELW A;  4LPF A;  4MU1 A;  4MU0 A;  2F1D A;  4MU3 A;  4LOM A;  4MU4 A;  5DNX A; 
#chains in the Genus database with same CATH topology
 5DRO A;  1MG7 A;  1YHC A;  2HFU A;  4YHH I;  1NHI A;  3T1H E;  3ZZT A;  3ZKD A;  1FKA E;  4IFD C;  2UUC I;  5ELW A;  4YHH E;  5JEA F;  4MU3 A;  2UXC I;  1ZM9 A;  4B3R I;  4USM A;  5FWK A;  4JI1 I;  5LMU I;  2UUC E;  1UEK A;  1S4E A;  2HHH I;  2UXC E;  1MX0 A;  1R6M A;  3ZZ0 A;  4B3R E;  4JI3 I;  3LNU A;  4JI1 E;  4JG4 A;  5LMU E;  3V2U C;  4LF6 E;  3WU5 A;  4AM3 A;  2WP8 B;  2HHH E;  5FLX Q;  2BR2 A;  4YY3 I;  4JI3 E;  2PO0 B;  2V34 A;  5K36 C;  2NN6 D;  3PS3 A;  4YY3 E;  3K1J A;  2C39 B;  3L7Z A;  4JI0 I;  1FJG I;  1OYP A;  2Z5C B;  1USU A;  2JT2 A;  4JI0 E;  2UXD I;  1FI4 A;  4MDT A;  4DV2 I;  2UUA I;  1FJG E;  2UXD E;  4LCG A;  2C37 A;  2UUA E;  1RHY A;  4LOM A;  4LF5 I;  3V5R A;  5JEA D;  5EL9 A;  4DV6 I;  3Q1Q A;  2Q2E B;  4LF5 E;  4U3B A;  5C0X F;  4ISA A;  4DR4 I;  4DV6 E;  2DEJ A;  3B82 A;  2BA1 G;  2UU9 I;  4RPF A;  4OO1 B;  4DR4 E;  2V8P A;  2BA0 G;  4HAC B;  2PNM A;  3QT5 A;  4USK A;  2PO1 B;  2UU9 E;  2GS8 A;  2O1W A;  2WP8 A;  2J7K A;  3U1Y A;  2PNZ A;  2PO0 A;  1Z59 A;  4DPW A;  4P7A A;  4MQY A;  2BM1 A;  4KHP I;  4GKK I;  1Y6Z A;  4U3D A;  4IS9 A;  4KHP E;  4XTJ A;  3B78 A;  1H7S A;  3M6A A;  4Z7C A;  3Q6N A;  1D6T A;  4GKK E;  3M85 D;  2BM0 A;  1UDO A;  3P06 A;  1E3P A;  1ZM4 A;  1YH8 A;  2E1R A;  2Z5B B;  3K85 A;  3H4L A;  4DR5 I;  4X64 I;  3JAM C;  5C0X A;  4WUC A;  4B3S I;  3PYG A;  4DUZ I;  4DR5 E;  1EI1 A;  4X64 E;  5C0X D;  3KRN A;  4B3S E;  2R3V A;  4DUZ E;  3QT7 A;  2HKE A;  5A2Q C;  5JEA C;  3P3C A;  3P3G A;  1ZXN A;  1IBL I;  1PVG A;  3PS2 A;  4JI4 I;  5GMD A;  1A6F A;  4OO1 A;  1IBL E;  4FW5 A;  4HAC A;  5DNL A;  3Q6M A;  4JI2 I;  4ED4 A;  4JI4 E;  4LPF A;  5DRQ A;  1UDN A;  4DR1 I;  5C0X E;  1UDQ A;  1VIS A;  2XEX A;  1B63 A;  4DR1 E;  3ZM7 A;  2UXB I;  4B3T I;  1U2R A;  2O1T A;  1PIE A;  4GKJ I;  4X65 I;  1J5E I;  4MU4 A;  2UXB E;  4B3T E;  4IZK B;  4FW3 A;  4GKJ E;  3DD6 A;  4X65 E;  4FWH A;  1J5E E;  4OO1 E;  3OTO I;  5IT9 C;  4DR2 I;  3HKM A;  1H72 C;  3PYD A;  1E3H A;  1RR9 A;  4DPX A;  3OTO E;  2WW4 A;  2VES A;  2Z5B A;  4DU8 A;  4DR2 E;  3GON A;  4IFD B;  2DEI A;  4OKG A;  1S16 A;  3P76 A;  4AQY I;  4DV1 I;  4HXZ A;  4B3M I;  1Z0V A;  1Y4U A;  2GQ0 A;  4PRV A;  2GO3 A;  4K0K I;  1XXE A;  5C0X C;  4MU1 A;  4AQY E;  3UHM A;  4DV1 E;  4B3M E;  2LJP A;  1FWK A;  4FWD A;  2AJ4 A;  4DV2 E;  1Z0C A;  4K0K E;  1P42 A;  4FN5 A;  2ZM6 I;  2BV3 A;  1BKN A;  4N3O A;  3JAM Q;  4OX9 I;  2ZM6 E;  2V2Q A;  5K36 B;  4BA2 B;  3J7A M;  4DV0 I;  2JE6 B;  3J80 C;  1Y4S A;  4OX9 E;  1H7U A;  4JI7 I;  5A2Q Q;  1ZM3 A;  4IZJ B;  4DV0 E;  3GLL A;  2HK3 A;  4JI7 E;  2PO2 B;  5L3J A;  5IWA I;  2Z5E A;  4IZK A;  1ZM2 A;  2HKJ A;  1ZXM A;  1KIJ A;  2F4V I;  1HNZ I;  2JEB B;  4LFB I;  5IWA E;  4DPU A;  2J65 A;  4OO1 F;  3WU3 A;  4FW9 A;  2F4V E;  2A2C A;  1HNZ E;  1VI7 A;  4LFB E;  2IOQ A;  4URL A;  2C39 A;  1N36 I;  4ZVI A;  1N33 I;  2X7I A;  4R1F A;  2Z5C A;  1N36 E;  4MU0 A;  4LCH A;  1NHJ A;  5IT9 Q;  1XMQ I;  4WUD A;  3U1K A;  1HK7 A;  1UDS A;  2IOP A;  1XMQ E;  3ZZU A;  1Z0E A;  1Z0W A;  4NXM I;  5DRR A;  2UUB I;  4DV5 I;  4FW4 A;  1RRE A;  2VQF I;  2O1U A;  4FW7 A;  4NXM E;  2CGE A;  2UUB E;  4DV5 E;  4UTG A;  5DNX A;  2JE6 A;  2VQF E;  2BR2 B;  2NN6 B;  4Z7Y A;  2HK2 A;  4IZJ A;  4JI8 I;  3H1C A;  2JEA B;  3L7Z B;  4JI8 E;  2WNR B;  3B4T A;  2PO1 A;  2NN6 F;  4OO1 D;  3NZK A;  3CWV A;  1HNW I;  4M1K A;  2AE8 A;  4JI2 E;  2JEB A;  4X62 I;  3J80 Q;  4HYM A;  1HNW E;  4HY1 A;  2V2V A;  4NBQ A;  4LFC I;  2VQE I;  1KKH A;  3F0N A;  4X62 E;  3GCM A;  1MU5 A;  3J81 C;  2C37 B;  4PRX A;  1FNM A;  3J7A G;  4LFC E;  4I3H A;  2VQE E;  1EA6 A;  5JEA B;  3M85 G;  1XNQ I;  4LF9 I;  3LTO A;  3HUL A;  1DAR A;  1HR0 I;  3QT8 A;  1XNQ E;  1OYR A;  4LF9 E;  4DPT A;  5BR8 I;  1QZR A;  4KQV A;  1B62 A;  1HR0 E;  1USV A;  1KTV A;  5BR8 E;  2BA1 D;  4LF6 I;  3P3E A;  4MYU A;  1H73 A;  2BA0 D;  3QT6 A;  4OZE A;  4AID A;  4DR3 I;  2X36 A;  4DPY A;  2PNZ B;  2NN6 A;  4IFD F;  4DUY I;  4X66 I;  4DR3 E;  4LCF A;  3WU6 A;  4QNK A;  1N0V C;  1I94 I;  4LF4 I;  2HFS A;  2C38 B;  2JEA A;  4GQU A;  3LPS A;  4X66 E;  4DUY E;  1Z5C A;  4JI5 I;  1OYS A;  2WNR A;  4JV5 I;  1Z5B A;  1I94 E;  4LF4 E;  4DV4 I;  2A2D A;  1N0U A;  4JI5 E;  4OO1 C;  4JV5 E;  4WUB A;  4DV4 E;  4AIM A;  1Z0T A;  2OI2 A;  3ZKB A;  4NXN I;  5K36 F;  2NN6 E;  3HJC A;  1R6L A;  4JI6 I;  4QNJ A;  4BA1 B;  5C0X B;  1XHK A;  4NXN E;  5JEA A;  3K17 A;  2GO4 A;  2R42 A;  4JI6 E;  3PYE A;  3B8H A;  3PS1 A;  3PRY A;  3M7N D;  4DV3 I;  3J81 Q;  2CZ9 A;  2ZBK B;  2EFG A;  4DV3 E;  5GME A;  4IFD A;  1N32 I;  4IFD D;  2IER A;  4J3D A;  4DV7 I;  4DR7 I;  5FLX C;  1Y60 A;  1N33 E;  5JEA E;  1N32 E;  1XNR I;  2V2Z A;  4DV7 E;  4DR7 E;  1Y5Y A;  5EKW A;  1NHH A;  2E5L I;  1XNR E;  2C38 A;  3GME A;  4LF8 I;  3T1Y I;  2NN6 C;  2CG9 A;  2CVE A;  2E5L E;  1WUU A;  1N34 I;  2IES A;  5K36 A;  4DU7 A;  5DRP A;  4BA2 A;  4DR6 I;  5LL6 R;  4LF8 E;  1NZ0 A;  4IFD E;  3T1Y E;  4JYA I;  1FWL A;  5K36 D;  4FWG A;  1ELO A;  1N34 E;  2VF3 A;  1PKP A;  1Z0G A;  4DR6 E;  4DXL A;  1IBM I;  1H74 A;  4JYA E;  1XMO I;  3PYF A;  1HNX I;  1Z0B A;  4LFA I;  4IZJ D;  3CDI A;  4UT4 A;  2F1D A;  2PO2 A;  5LMN I;  1IBM E;  4BA1 A;  4MYT A;  4FW6 A;  1XMO E;  1HNX E;  4LF7 I;  4LFA E;  4EMD A;  3D4J A;  1IBK I;  5LMN E;  2PNL A;  2O3Z A;  3WU4 A;  3CDJ A;  4LF7 E;  2O1V A;  2ZIT A;  3M7N G;  5K36 E;  1KVK A;  1IBK E;  1Z5A A;  2NPF A;  4P52 A;  1OJ4 A;  1K47 A;  4PU9 A;  3T1H I; 
#chains in the Genus database with same CATH homology
 4QNJ A;  4GQU A;  5EKW A;  2AE8 A;  1RHY A;  5DNL A;  4QNK A;  5EL9 A;  5ELW A;  4LPF A;  4MU1 A;  4MU0 A;  2F1D A;  4MU3 A;  4LOM A;  4MU4 A;  5DNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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