5EL9A

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 64
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5el9A02
5ELWA 5EL9A 4MU1A 4MU4A 4QNJA 1RHYA 4MU3A 5EKWA 5DNXA 4QNKA 4GQUA 2F1DA 4LPFA 2AE8A 5DNLA 4MU0A 4LOMA
chains in the Genus database with same CATH superfamily
1ZM4A 1ZM2A 3H1CA 4X62E 1Z5CA 2VF3A 4B3ME 5K36B 4DR5I 4JI1I 2PNLA 5C0XE 1HR0E 3U1YA 2BA1D 1N36I 2XEXA 1OYRA 2OI2A 1XMOE 4GKKE 2HFSA 4MDTA 4DV6E 4DV5E 1H73A 3M85G 4DXLA 1XNRI 4DR1E 4NXNI 4OX9E 1RHYA 2UUAE 3Q1QA 5K36D 1FWKA 4OO1C 2J7KA 5C0XC 4GQUA 4U3BA 1YHCA 4UTGA 3B8HA 5LMUE 4JI4I 3PYFA 5K36E 1HNXI 4JI7I 3PYDA 2F4VI 4JI2E 1PIEA 2V2ZA 4DV0E 1IBLE 1EA6A 4DV7I 4JV5E 4AM3A 2IESA 2CVEA 2IOPA 4LF4E 1A6FA 3NZKA 4BA1B 4J3DA 4DPXA 5BR8E 2NN6C 3UHMA 2V2VA 5GMEA 4DR1I 4LFAI 2E5LI 4U3DA 2UU9I 4LF8I 3ZZUA 2E1RA 5DNXA 5L3JA 5K36A 1K47A 1UEKA 1USVA 2PO0B 4FW7A 4DR4E 3F0NA 2WNRA 4DV2I 1E3HA 5GMDA 1S4EA 2V2QA 1Y4SA 5JEAC 4LCGA 4FW4A 4P52A 1VISA 3ZM7A 2BM1A 4JI0E 2R42A 4X65I 4DR2E 3P76A 4FW6A 4IS9A 1UDNA 4XTJA 4DPUA 2CG9A 5A2QC 1XMQI 3B78A 4B3RI 4HACB 1D6TA 1YH8A 4GKJI 3J7AM 1OJ4A 4AQYE 4LCFA 2GO4A 4YY3E 1FKAE 1IBKI 2Z5CA 3GONA 4LCHA 2HKEA 2BA0G 1Z5BA 1Y6ZA 1N32E 3HJCA 4LF7I 1N0UA 1NHIA 4JI1E 1XXEA 4OO1B 4OO1F 3P06A 1H7UA 2Z5EA 1IBMI 4MU3A 5JEAD 1N34E 4DR3I 2A2DA 4DR7E 4WUCA 1XMOI 2PNZA 4GKKI 1KVKA 3KRNA 4DU7A 1ZXMA 1Z0VA 5JEAE 4KHPI 1FWLA 1HK7A 3HULA 4OO1D 4ISAA 1I94I 4DUZE 4LFCE 4DV4E 4LPFA 4DV3I 4MYUA 1B62A 1Y60A 5IWAE 2NN6B 2J65A 3U1KA 4IFDE 5C0XF 2GO3A 2JE6B 4WUBA 2IERA 4DUYE 2NPFA 4HXZA 4JI2I 2WP8A 2C37B 2UXDI 4BA2A 1MU5A 4QNJA 4FWDA 4PU9A 1IBME 1RREA 4JI5I 3GCMA 1HNWI 1ELOA 2CGEA 4JG4A 1FJGE 4USKA 4NBQA 5K36C 4LF6E 3L7ZB 5IT9Q 4LFCI 2WP8B 4DUZI 2Z5CB 2UU9E 4IZKB 4WUDA 4LF8E 4I3HA 4LF5I 3OTOE 1E3PA 5LL6R 3T1HI 3P3GA 2PO1A 2O1VA 4AIDA 2JEAA 4MYTA 2NN6A 4K0KE 3P3CA 5DRPA 4HY1A 4JI6I 3L7ZA 3K17A 3M85D 1DARA 4Z7CA 4X65E 1XNQI 1KIJA 4ZVIA 4USMA 1HNWE 4NXMI 2BA1G 2JEBA 1FNMA 3JAMC 3B82A 3WU4A 5DROA 4RPFA 1Z0WA 4B3SI 4FWGA 2JE6A 1PVGA 4B3MI 1Y5YA 3WU6A 4YY3I 4JYAE 3M7ND 2VQEI 5LMUI 4P7AA 3T1HE 4LF7E 4BA2B 2O1UA 2X36A 1EI1A 3D4JA 2PO2B 2GS8A 2ZBKB 1U2RA 1KKHA 4DR6E 4DV7E 4JV5I 4DV5I 4JI8E 3LTOA 4K0KI 2NN6D 5LMNI 4X64I 1KTVA 1FI4A 5DRQA 3H4LA 5FWKA 3CWVA 4LFBE 3QT7A 5BR8I 2WNRB 4KHPE 2BR2A 4DV4I 1NHHA 3ZZTA 2VQFE 4IFDD 1Z0CA 5EKWA 3PS2A 5IWAI 1HNXE 1HNZE 5FLXC 3P3EA 2PO0A 4IZJD 4MQYA 1Z0GA 1Y4UA 1R6LA 3ZKBA 1HR0I 1UDSA 2R3VA 3LPSA 3CDJA 4HACA 1VI7A 2CZ9A 1N36E 2WW4A 2DEJA 2V8PA 4FN5A 3GLLA 3Q6NA 3PYGA 4JI8I 5LMNE 2X7IA 2ZITA 1RR9A 1WUUA 4IZJB 1ZXNA 2JEBB 4NXNE 2JT2A 1FJGI 4OO1A 3WU5A 5C0XA 1J5EE 4LF6I 4OKGA 2BV3A 5ELWA 1N33I 2BA0D 2C39B 4JI3I 4JI4E 1HNZI 2UXCI 2UUCI 4N3OA 3K1JA 1IBLI 2AE8A 2NN6E 4LF9E 1NZ0A 4M1KA 2LJPA 1N34I 1Z5AA 2DEIA 4DR7I 5JEAB 3PS1A 1XMQE 2UUAI 3QT6A 1PKPA 5DRRA 2V34A 2GQ0A 4IZKA 3J80Q 3V2UC 4LFAE 4DV3E 2Z5BA 3LNUA 1J5EI 1MG7A 1MX0A 3ZKDA 4JI7E 3ZZ0A 4FW5A 4AIMA 1Z0BA 2O1WA 2ZM6E 1N32I 4JYAI 4FW3A 4IFDC 1N33E 4DV2E 4DV0I 3J7AG 4MU4A 5C0XB 1Z0EA 4DR3E 4YHHI 4ED4A 3JAMQ 1UDOA 2C37A 3QT8A 4JI0I 2HHHE 1BKNA 2BR2B 4FWHA 4IFDA 2HK3A 2VESA 2UUBE 4DR2I 4B3TI 5IT9C 4X66I 2BM0A 3PYEA 3J81Q 3Q6MA 2IOQA 2UXBE 2JEAB 4GKJE 4IFDF 4AQYI 3WU3A 1XHKA 4DPWA 4DR5E 4DUYI 1USUA 3OTOI 2ZM6I 4URLA 4PRXA 4R1FA 2O3ZA 5K36F 2HFUA 3J80C 2PO1B 2PNMA 4YHHE 1XNRE 4EMDA 2F1DA 3T1YE 5FLXQ 2C38A 4MU0A 1NHJA 3HKMA 2HK2A 4BA1A 3CDIA 3PS3A 4DV1I 4HYMA 2C39A 4X66E 2Z5BB 1UDQA 1P42A 4MU1A 1I94E 1R6MA 4OZEA 2UXBI 1IBKE 3V5RA 4LF5E 2F4VE 4JI3E 2UXCE 4DPTA 2C38B 1B63A 2PO2A 1Z0TA 4LF4I 3QT5A 4UT4A 4IFDB 4JI6E 4LF9I 3DD6A 1H7SA 3M7NG 4IZJA 4JI5E 4KQVA 1XNQE 1ZM3A 2HKJA 3T1YI 4NXME 4LFBI 2UUCE 2AJ4A 2E5LE 4DV1E 3PRYA 3J81C 4B3SE 4X62I 4FW9A 2PNZB 5A2QQ 1N0VC 3B4TA 1H74A 1QZRA 4DR4I 3GMEA 5DNLA 3M6AA 2VQEE 2VQFI 2EFGA 1OYSA 3K85A 1Z59A 4DU8A 2UXDE 2A2CA 4DR6I 4OO1E 4DV6I 5JEAA 1H72C 1ZM9A 4X64E 2O1TA 2NN6F 1S16A 1OYPA 2Q2EB 2HHHI 4QNKA 4DPYA 4LOMA 5C0XD 4OX9I 5EL9A 2UUBI 4B3TE 4B3RE 4Z7YA 5JEAF 4PRVA
chains in the Genus database with same CATH topology
5ELWA 5EL9A 4MU1A 4MU4A 4QNJA 1RHYA 4MU3A 5EKWA 5DNXA 4QNKA 4GQUA 2F1DA 4LPFA 2AE8A 5DNLA 4MU0A 4LOMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ELW A;  5EL9 A;  4MU1 A;  4MU4 A;  4QNJ A;  1RHY A;  4MU3 A;  5EKW A;  5DNX A;  4QNK A;  4GQU A;  2F1D A;  4LPF A;  2AE8 A;  5DNL A;  4MU0 A;  4LOM A; 
#chains in the Genus database with same CATH topology
 1ZM4 A;  1ZM2 A;  3H1C A;  4X62 E;  1Z5C A;  2VF3 A;  4B3M E;  5K36 B;  4DR5 I;  4JI1 I;  2PNL A;  5C0X E;  1HR0 E;  3U1Y A;  2BA1 D;  1N36 I;  2XEX A;  1OYR A;  2OI2 A;  1XMO E;  4GKK E;  2HFS A;  4MDT A;  4DV6 E;  4DV5 E;  1H73 A;  3M85 G;  4DXL A;  1XNR I;  4DR1 E;  4NXN I;  4OX9 E;  1RHY A;  2UUA E;  3Q1Q A;  5K36 D;  1FWK A;  4OO1 C;  2J7K A;  5C0X C;  4GQU A;  4U3B A;  1YHC A;  4UTG A;  3B8H A;  5LMU E;  4JI4 I;  3PYF A;  5K36 E;  1HNX I;  4JI7 I;  3PYD A;  2F4V I;  4JI2 E;  1PIE A;  2V2Z A;  4DV0 E;  1IBL E;  1EA6 A;  4DV7 I;  4JV5 E;  4AM3 A;  2IES A;  2CVE A;  2IOP A;  4LF4 E;  1A6F A;  3NZK A;  4BA1 B;  4J3D A;  4DPX A;  5BR8 E;  2NN6 C;  3UHM A;  2V2V A;  5GME A;  4DR1 I;  4LFA I;  2E5L I;  4U3D A;  2UU9 I;  4LF8 I;  3ZZU A;  2E1R A;  5DNX A;  5L3J A;  5K36 A;  1K47 A;  1UEK A;  1USV A;  2PO0 B;  4FW7 A;  4DR4 E;  3F0N A;  2WNR A;  4DV2 I;  1E3H A;  5GMD A;  1S4E A;  2V2Q A;  1Y4S A;  5JEA C;  4LCG A;  4FW4 A;  4P52 A;  1VIS A;  3ZM7 A;  2BM1 A;  4JI0 E;  2R42 A;  4X65 I;  4DR2 E;  3P76 A;  4FW6 A;  4IS9 A;  1UDN A;  4XTJ A;  4DPU A;  2CG9 A;  5A2Q C;  1XMQ I;  3B78 A;  4B3R I;  4HAC B;  1D6T A;  1YH8 A;  4GKJ I;  3J7A M;  1OJ4 A;  4AQY E;  4LCF A;  2GO4 A;  4YY3 E;  1FKA E;  1IBK I;  2Z5C A;  3GON A;  4LCH A;  2HKE A;  2BA0 G;  1Z5B A;  1Y6Z A;  1N32 E;  3HJC A;  4LF7 I;  1N0U A;  1NHI A;  4JI1 E;  1XXE A;  4OO1 B;  4OO1 F;  3P06 A;  1H7U A;  2Z5E A;  1IBM I;  4MU3 A;  5JEA D;  1N34 E;  4DR3 I;  2A2D A;  4DR7 E;  4WUC A;  1XMO I;  2PNZ A;  4GKK I;  1KVK A;  3KRN A;  4DU7 A;  1ZXM A;  1Z0V A;  5JEA E;  4KHP I;  1FWL A;  1HK7 A;  3HUL A;  4OO1 D;  4ISA A;  1I94 I;  4DUZ E;  4LFC E;  4DV4 E;  4LPF A;  4DV3 I;  4MYU A;  1B62 A;  1Y60 A;  5IWA E;  2NN6 B;  2J65 A;  3U1K A;  4IFD E;  5C0X F;  2GO3 A;  2JE6 B;  4WUB A;  2IER A;  4DUY E;  2NPF A;  4HXZ A;  4JI2 I;  2WP8 A;  2C37 B;  2UXD I;  4BA2 A;  1MU5 A;  4QNJ A;  4FWD A;  4PU9 A;  1IBM E;  1RRE A;  4JI5 I;  3GCM A;  1HNW I;  1ELO A;  2CGE A;  4JG4 A;  1FJG E;  4USK A;  4NBQ A;  5K36 C;  4LF6 E;  3L7Z B;  5IT9 Q;  4LFC I;  2WP8 B;  4DUZ I;  2Z5C B;  2UU9 E;  4IZK B;  4WUD A;  4LF8 E;  4I3H A;  4LF5 I;  3OTO E;  1E3P A;  5LL6 R;  3T1H I;  3P3G A;  2PO1 A;  2O1V A;  4AID A;  2JEA A;  4MYT A;  2NN6 A;  4K0K E;  3P3C A;  5DRP A;  4HY1 A;  4JI6 I;  3L7Z A;  3K17 A;  3M85 D;  1DAR A;  4Z7C A;  4X65 E;  1XNQ I;  1KIJ A;  4ZVI A;  4USM A;  1HNW E;  4NXM I;  2BA1 G;  2JEB A;  1FNM A;  3JAM C;  3B82 A;  3WU4 A;  5DRO A;  4RPF A;  1Z0W A;  4B3S I;  4FWG A;  2JE6 A;  1PVG A;  4B3M I;  1Y5Y A;  3WU6 A;  4YY3 I;  4JYA E;  3M7N D;  2VQE I;  5LMU I;  4P7A A;  3T1H E;  4LF7 E;  4BA2 B;  2O1U A;  2X36 A;  1EI1 A;  3D4J A;  2PO2 B;  2GS8 A;  2ZBK B;  1U2R A;  1KKH A;  4DR6 E;  4DV7 E;  4JV5 I;  4DV5 I;  4JI8 E;  3LTO A;  4K0K I;  2NN6 D;  5LMN I;  4X64 I;  1KTV A;  1FI4 A;  5DRQ A;  3H4L A;  5FWK A;  3CWV A;  4LFB E;  3QT7 A;  5BR8 I;  2WNR B;  4KHP E;  2BR2 A;  4DV4 I;  1NHH A;  3ZZT A;  2VQF E;  4IFD D;  1Z0C A;  5EKW A;  3PS2 A;  5IWA I;  1HNX E;  1HNZ E;  5FLX C;  3P3E A;  2PO0 A;  4IZJ D;  4MQY A;  1Z0G A;  1Y4U A;  1R6L A;  3ZKB A;  1HR0 I;  1UDS A;  2R3V A;  3LPS A;  3CDJ A;  4HAC A;  1VI7 A;  2CZ9 A;  1N36 E;  2WW4 A;  2DEJ A;  2V8P A;  4FN5 A;  3GLL A;  3Q6N A;  3PYG A;  4JI8 I;  5LMN E;  2X7I A;  2ZIT A;  1RR9 A;  1WUU A;  4IZJ B;  1ZXN A;  2JEB B;  4NXN E;  2JT2 A;  1FJG I;  4OO1 A;  3WU5 A;  5C0X A;  1J5E E;  4LF6 I;  4OKG A;  2BV3 A;  5ELW A;  1N33 I;  2BA0 D;  2C39 B;  4JI3 I;  4JI4 E;  1HNZ I;  2UXC I;  2UUC I;  4N3O A;  3K1J A;  1IBL I;  2AE8 A;  2NN6 E;  4LF9 E;  1NZ0 A;  4M1K A;  2LJP A;  1N34 I;  1Z5A A;  2DEI A;  4DR7 I;  5JEA B;  3PS1 A;  1XMQ E;  2UUA I;  3QT6 A;  1PKP A;  5DRR A;  2V34 A;  2GQ0 A;  4IZK A;  3J80 Q;  3V2U C;  4LFA E;  4DV3 E;  2Z5B A;  3LNU A;  1J5E I;  1MG7 A;  1MX0 A;  3ZKD A;  4JI7 E;  3ZZ0 A;  4FW5 A;  4AIM A;  1Z0B A;  2O1W A;  2ZM6 E;  1N32 I;  4JYA I;  4FW3 A;  4IFD C;  1N33 E;  4DV2 E;  4DV0 I;  3J7A G;  4MU4 A;  5C0X B;  1Z0E A;  4DR3 E;  4YHH I;  4ED4 A;  3JAM Q;  1UDO A;  2C37 A;  3QT8 A;  4JI0 I;  2HHH E;  1BKN A;  2BR2 B;  4FWH A;  4IFD A;  2HK3 A;  2VES A;  2UUB E;  4DR2 I;  4B3T I;  5IT9 C;  4X66 I;  2BM0 A;  3PYE A;  3J81 Q;  3Q6M A;  2IOQ A;  2UXB E;  2JEA B;  4GKJ E;  4IFD F;  4AQY I;  3WU3 A;  1XHK A;  4DPW A;  4DR5 E;  4DUY I;  1USU A;  3OTO I;  2ZM6 I;  4URL A;  4PRX A;  4R1F A;  2O3Z A;  5K36 F;  2HFU A;  3J80 C;  2PO1 B;  2PNM A;  4YHH E;  1XNR E;  4EMD A;  2F1D A;  3T1Y E;  5FLX Q;  2C38 A;  4MU0 A;  1NHJ A;  3HKM A;  2HK2 A;  4BA1 A;  3CDI A;  3PS3 A;  4DV1 I;  4HYM A;  2C39 A;  4X66 E;  2Z5B B;  1UDQ A;  1P42 A;  4MU1 A;  1I94 E;  1R6M A;  4OZE A;  2UXB I;  1IBK E;  3V5R A;  4LF5 E;  2F4V E;  4JI3 E;  2UXC E;  4DPT A;  2C38 B;  1B63 A;  2PO2 A;  1Z0T A;  4LF4 I;  3QT5 A;  4UT4 A;  4IFD B;  4JI6 E;  4LF9 I;  3DD6 A;  1H7S A;  3M7N G;  4IZJ A;  4JI5 E;  4KQV A;  1XNQ E;  1ZM3 A;  2HKJ A;  3T1Y I;  4NXM E;  4LFB I;  2UUC E;  2AJ4 A;  2E5L E;  4DV1 E;  3PRY A;  3J81 C;  4B3S E;  4X62 I;  4FW9 A;  2PNZ B;  5A2Q Q;  1N0V C;  3B4T A;  1H74 A;  1QZR A;  4DR4 I;  3GME A;  5DNL A;  3M6A A;  2VQE E;  2VQF I;  2EFG A;  1OYS A;  3K85 A;  1Z59 A;  4DU8 A;  2UXD E;  2A2C A;  4DR6 I;  4OO1 E;  4DV6 I;  5JEA A;  1H72 C;  1ZM9 A;  4X64 E;  2O1T A;  2NN6 F;  1S16 A;  1OYP A;  2Q2E B;  2HHH I;  4QNK A;  4DPY A;  4LOM A;  5C0X D;  4OX9 I;  5EL9 A;  2UUB I;  4B3T E;  4B3R E;  4Z7Y A;  5JEA F;  4PRV A; 
#chains in the Genus database with same CATH homology
 5ELW A;  5EL9 A;  4MU1 A;  4MU4 A;  4QNJ A;  1RHY A;  4MU3 A;  5EKW A;  5DNX A;  4QNK A;  4GQU A;  2F1D A;  4LPF A;  2AE8 A;  5DNL A;  4MU0 A;  4LOM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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