3PS1A

Crystal structure of the escherichia coli lpxc/lpc-011 complex
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
300
structure length
300
Chain Sequence
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold.
pubmed doi rcsb
source organism Escherichia coli ihe3034
molecule tags Hydrolase/antibiotic
total genus 83
structure length 300
sequence length 300
ec nomenclature ec 3.5.1.-:
pdb deposition date 2010-11-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3ps1A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3ps1A02
5DRQA 4LCFA 2JT2A 4LCGA 3UHMA 4FW6A 2O3ZA 4FW7A 4MDTA 2GO3A 4FW5A 3PS3A 4LCHA 1YH8A 3U1YA 4FW3A 4J3DA 3PS1A 2IESA 3P76A 3PS2A 4FW4A 3P3GA 1YHCA 5DROA 4OZEA 1XXEA 1P42A 4U3DA 5DRRA 2GO4A 2IERA 2J65A 4IS9A 3NZKA 4MQYA 4U3BA 4ISAA 3P3EA 2VESA 5DRPA 4OKGA 3P3CA
chains in the Genus database with same CATH superfamily
3ZZUA 2X7IA 3PYFA 4JI6E 1Y4SA 1XNQI 2R42A 1MU5A 2E5LI 1UDNA 1PVGA 4X64I 1Z5BA 3PS1A 3L7ZA 4JI2I 4IZKA 5DROA 4GKKI 3T1HE 2Z5EA 4LF8E 4LFCE 1RR9A 4DV3E 3M85G 4JI0E 2UU9I 4DR6I 2UUCI 1H7SA 2V2VA 4LCGA 1ELOA 1N33E 1Y60A 1FI4A 5BR8E 3GONA 1VISA 4LOMA 2GO3A 4JI3I 5FLXQ 4DV5E 1HNXI 2PO1A 3PYDA 4AQYI 2PNZB 1N36E 3QT6A 4Z7CA 4DUZE 2F1DA 1B62A 4X65E 1Y4UA 2NN6D 2A2CA 4DR1I 4LF9I 2NN6F 2HHHE 4YY3E 4P7AA 2JEAB 1Y5YA 3CDIA 3WU6A 3J80Q 4RPFA 3J81C 2VF3A 4MDTA 4OO1B 4NXNI 5A2QQ 2UUBI 4LCHA 4DR7I 3J7AG 1YH8A 4ZVIA 2O1VA 1HNWE 4B3SI 2E1RA 4BA2A 1XXEA 4U3DA 1HR0E 2WP8B 2UUAE 1OYSA 4NXME 5LMUI 4LF6I 2J65A 4DV1E 4PRVA 4NBQA 4LF7E 1FKAE 1UDSA 2NN6E 4DR4E 4DV6E 4JI7E 4IZJB 1R6MA 2ZITA 4JYAE 1OJ4A 5JEAC 5K36E 1MG7A 1HNZI 1BKNA 4LFAI 2NN6A 2ZM6I 4KHPI 1J5EI 4IFDB 1XHKA 2O1WA 4DV7E 4JI1E 1OYPA 2O1UA 2BA1G 3T1YE 2Z5CB 3M85D 4DUYI 2PO0B 2F4VI 1Z0TA 4B3RI 5K36B 1S4EA 3ZM7A 3CDJA 5IWAI 5C0XD 1NHIA 3B82A 5IT9C 2NN6C 2Z5BB 5C0XF 1ZM9A 1Z0CA 4DR3E 1Y6ZA 3Q6NA 1I94I 2OI2A 4JI4I 1N34E 2IOQA 3HULA 4AIDA 4MYUA 2HKEA 3QT5A 3V5RA 2JEBB 2ZBKB 4B3MI 4HY1A 4LF5I 3M7NG 4LFBI 2HFUA 3CWVA 1QZRA 4MU1A 2CGEA 4JI6I 5ELWA 5FWKA 2IESA 4WUCA 1FJGE 3GLLA 3PYEA 2VQEE 4DV4E 5JEAD 3OTOI 3T1HI 2C37A 2BR2A 5JEAF 4LF8I 1N32I 4HXZA 5C0XA 1XMQE 1MX0A 2C38A 5FLXC 4DV3I 3GCMA 2HK3A 1EA6A 3L7ZB 4IZKB 2GS8A 4OO1D 1XNQE 1FWLA 2HKJA 1NZ0A 2BA0G 2CG9A 4DXLA 2HFSA 4JI2E 4USMA 4X62I 4X66E 4DV5I 3V2UC 4GKKE 5L3JA 4DR5E 4FW4A 4PRXA 4PU9A 5DRRA 1R6LA 3HKMA 5GMEA 1K47A 2V8PA 3J7AM 2CZ9A 3J80C 1FNMA 4FN5A 5JEAE 5C0XC 5LMNE 5A2QC 2UU9E 3QT7A 2A2DA 2PO1B 4IZJD 1IBMI 4DR6E 1N0VC 2BA1D 5DRPA 4XTJA 2PNMA 2PNLA 3KRNA 1HNXE 4I3HA 4JI5I 1H72C 4OX9I 5JEAA 3K17A 4N3OA 4B3TE 4MU0A 4J3DA 4IFDD 4GKJI 2DEIA 3PS2A 1ZXNA 4OZEA 1USUA 2C39A 1HR0I 1XMOI 1FWKA 2UUAI 2UXBE 4NXMI 2BM0A 4ED4A 2BM1A 1XNRI 4DV1I 3P3EA 3WU5A 3M7ND 2HK2A 4DV6I 4NXNE 3P3CA 4BA2B 4WUDA 4DV0E 4JYAI 4DR7E 1A6FA 2AE8A 3PRYA 4AIMA 4R1FA 1B63A 2IOPA 4FWHA 3Q6MA 3P76A 1E3PA 5LMUE 1KIJA 4LF6E 4OO1C 3LPSA 4BA1A 1KKHA 2IERA 2PO2A 3JAMC 4DV7I 4DV2E 1IBKI 2UXCI 2BV3A 2NN6B 1UDQA 2LJPA 1PIEA 4QNKA 3ZZ0A 4LFAE 4EMDA 2WNRA 1EI1A 3JAMQ 2UXDE 1N0UA 2BA0D 1D6TA 1Z0WA 3U1YA 2WW4A 4HACA 1RHYA 2VQFI 4LF4I 4JI8E 1N34I 1KTVA 4DR2E 3B78A 1VI7A 1Z59A 2F4VE 4YHHI 1UDOA 4DU8A 1Z0VA 4IFDC 3H1CA 1H73A 1IBLE 2V2ZA 4LCFA 4JV5I 4FW6A 5EKWA 4AM3A 4FW5A 4FWGA 1PKPA 4WUBA 1I94E 2R3VA 4JI4E 5C0XE 4LPFA 2JE6A 1Z5CA 1P42A 1ZM4A 1KVKA 1FJGI 4K0KE 1U2RA 4B3ME 3Q1QA 4LF5E 2VQEI 4DV4I 2XEXA 4LFCI 4DU7A 1HK7A 4ISAA 2VESA 1XMQI 2CVEA 5GMDA 2O1TA 4DPTA 2JT2A 3U1KA 4Z7YA 4JI0I 4DPYA 2E5LE 4OO1F 2C37B 2BR2B 1Z0GA 1N33I 4X64E 5C0XB 2V34A 3K85A 3LNUA 5BR8I 2C38B 1S16A 4X66I 3OTOE 4DPWA 4DR5I 4URLA 4KQVA 1N36I 1N32E 4DUZI 4IS9A 1Z0BA 2AJ4A 4MQYA 5LMNI 4X65I 2UUCE 2PNZA 5DNXA 2HHHI 4YY3I 4JI3E 4FWDA 2EFGA 3K1JA 4OO1E 4X62E 3P06A 4UT4A 3PS3A 4AQYE 4M1KA 3WU4A 4B3TI 2DEJA 2JEAA 1OYRA 1YHCA 4IFDF 1H74A 1HNWI 4OO1A 2GO4A 1IBME 5JEAB 4QNJA 4DR1E 4LF9E 2UXBI 2X36A 4LF7I 5K36D 5EL9A 4JI5E 4OX9E 4DR4I 5K36F 4JI7I 2C39B 2WP8A 5DNLA 2UUBE 4DV0I 4GKJE 4B3SE 4FW9A 4IZJA 2J7KA 3P3GA 1XMOE 3J81Q 4IFDE 4HYMA 1XNRE 5LL6R 3B8HA 3ZKBA 4DPUA 4JI1I 4DV2I 4OKGA 3D4JA 3T1YI 3LTOA 5DRQA 3UHMA 1HNZE 4IFDA 4BA1B 1ZM2A 4MU4A 4P52A 1USVA 1Z0EA 2PO2B 3WU3A 3ZKDA 2ZM6E 4KHPE 4JG4A 1RREA 2UXDI 1J5EE 2Z5CA 1E3HA 4FW3A 3QT8A 2PO0A 3GMEA 4USKA 5K36A 1UEKA 4DR3I 1H7UA 2WNRB 1IBKE 3ZZTA 2UXCE 4JI8I 3NZKA 2Z5BA 3B4TA 4MYTA 3H4LA 4DUYE 4DR2I 4U3BA 4B3RE 3DD6A 2GQ0A 3M6AA 4DPXA 4HACB 4UTGA 2Q2EB 1IBLI 2O3ZA 1ZXMA 4FW7A 5IWAE 1Z5AA 2JEBA 2V2QA 1WUUA 4MU3A 4GQUA 2VQFE 5K36C 4LF4E 3PYGA 4YHHE 2NPFA 5IT9Q 1NHJA 4K0KI 1DARA 4LFBE 1ZM3A 3HJCA 2JE6B 4JV5E 1NHHA 3F0NA
chains in the Genus database with same CATH topology
5DRQA 4LCFA 2JT2A 4LCGA 3UHMA 4FW6A 2O3ZA 4FW7A 4MDTA 2GO3A 4FW5A 3PS3A 4LCHA 1YH8A 3U1YA 4FW3A 4J3DA 3PS1A 2IESA 3P76A 3PS2A 4FW4A 3P3GA 1YHCA 5DROA 4OZEA 1XXEA 1P42A 4U3DA 5DRRA 2GO4A 2IERA 2J65A 4IS9A 3NZKA 4MQYA 4U3BA 4ISAA 3P3EA 2VESA 5DRPA 4OKGA 3P3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DRQ A;  4LCF A;  2JT2 A;  4LCG A;  3UHM A;  4FW6 A;  2O3Z A;  4FW7 A;  4MDT A;  2GO3 A;  4FW5 A;  3PS3 A;  4LCH A;  1YH8 A;  3U1Y A;  4FW3 A;  4J3D A;  3PS1 A;  2IES A;  3P76 A;  3PS2 A;  4FW4 A;  3P3G A;  1YHC A;  5DRO A;  4OZE A;  1XXE A;  1P42 A;  4U3D A;  5DRR A;  2GO4 A;  2IER A;  2J65 A;  4IS9 A;  3NZK A;  4MQY A;  4U3B A;  4ISA A;  3P3E A;  2VES A;  5DRP A;  4OKG A;  3P3C A; 
#chains in the Genus database with same CATH topology
 3ZZU A;  2X7I A;  3PYF A;  4JI6 E;  1Y4S A;  1XNQ I;  2R42 A;  1MU5 A;  2E5L I;  1UDN A;  1PVG A;  4X64 I;  1Z5B A;  3PS1 A;  3L7Z A;  4JI2 I;  4IZK A;  5DRO A;  4GKK I;  3T1H E;  2Z5E A;  4LF8 E;  4LFC E;  1RR9 A;  4DV3 E;  3M85 G;  4JI0 E;  2UU9 I;  4DR6 I;  2UUC I;  1H7S A;  2V2V A;  4LCG A;  1ELO A;  1N33 E;  1Y60 A;  1FI4 A;  5BR8 E;  3GON A;  1VIS A;  4LOM A;  2GO3 A;  4JI3 I;  5FLX Q;  4DV5 E;  1HNX I;  2PO1 A;  3PYD A;  4AQY I;  2PNZ B;  1N36 E;  3QT6 A;  4Z7C A;  4DUZ E;  2F1D A;  1B62 A;  4X65 E;  1Y4U A;  2NN6 D;  2A2C A;  4DR1 I;  4LF9 I;  2NN6 F;  2HHH E;  4YY3 E;  4P7A A;  2JEA B;  1Y5Y A;  3CDI A;  3WU6 A;  3J80 Q;  4RPF A;  3J81 C;  2VF3 A;  4MDT A;  4OO1 B;  4NXN I;  5A2Q Q;  2UUB I;  4LCH A;  4DR7 I;  3J7A G;  1YH8 A;  4ZVI A;  2O1V A;  1HNW E;  4B3S I;  2E1R A;  4BA2 A;  1XXE A;  4U3D A;  1HR0 E;  2WP8 B;  2UUA E;  1OYS A;  4NXM E;  5LMU I;  4LF6 I;  2J65 A;  4DV1 E;  4PRV A;  4NBQ A;  4LF7 E;  1FKA E;  1UDS A;  2NN6 E;  4DR4 E;  4DV6 E;  4JI7 E;  4IZJ B;  1R6M A;  2ZIT A;  4JYA E;  1OJ4 A;  5JEA C;  5K36 E;  1MG7 A;  1HNZ I;  1BKN A;  4LFA I;  2NN6 A;  2ZM6 I;  4KHP I;  1J5E I;  4IFD B;  1XHK A;  2O1W A;  4DV7 E;  4JI1 E;  1OYP A;  2O1U A;  2BA1 G;  3T1Y E;  2Z5C B;  3M85 D;  4DUY I;  2PO0 B;  2F4V I;  1Z0T A;  4B3R I;  5K36 B;  1S4E A;  3ZM7 A;  3CDJ A;  5IWA I;  5C0X D;  1NHI A;  3B82 A;  5IT9 C;  2NN6 C;  2Z5B B;  5C0X F;  1ZM9 A;  1Z0C A;  4DR3 E;  1Y6Z A;  3Q6N A;  1I94 I;  2OI2 A;  4JI4 I;  1N34 E;  2IOQ A;  3HUL A;  4AID A;  4MYU A;  2HKE A;  3QT5 A;  3V5R A;  2JEB B;  2ZBK B;  4B3M I;  4HY1 A;  4LF5 I;  3M7N G;  4LFB I;  2HFU A;  3CWV A;  1QZR A;  4MU1 A;  2CGE A;  4JI6 I;  5ELW A;  5FWK A;  2IES A;  4WUC A;  1FJG E;  3GLL A;  3PYE A;  2VQE E;  4DV4 E;  5JEA D;  3OTO I;  3T1H I;  2C37 A;  2BR2 A;  5JEA F;  4LF8 I;  1N32 I;  4HXZ A;  5C0X A;  1XMQ E;  1MX0 A;  2C38 A;  5FLX C;  4DV3 I;  3GCM A;  2HK3 A;  1EA6 A;  3L7Z B;  4IZK B;  2GS8 A;  4OO1 D;  1XNQ E;  1FWL A;  2HKJ A;  1NZ0 A;  2BA0 G;  2CG9 A;  4DXL A;  2HFS A;  4JI2 E;  4USM A;  4X62 I;  4X66 E;  4DV5 I;  3V2U C;  4GKK E;  5L3J A;  4DR5 E;  4FW4 A;  4PRX A;  4PU9 A;  5DRR A;  1R6L A;  3HKM A;  5GME A;  1K47 A;  2V8P A;  3J7A M;  2CZ9 A;  3J80 C;  1FNM A;  4FN5 A;  5JEA E;  5C0X C;  5LMN E;  5A2Q C;  2UU9 E;  3QT7 A;  2A2D A;  2PO1 B;  4IZJ D;  1IBM I;  4DR6 E;  1N0V C;  2BA1 D;  5DRP A;  4XTJ A;  2PNM A;  2PNL A;  3KRN A;  1HNX E;  4I3H A;  4JI5 I;  1H72 C;  4OX9 I;  5JEA A;  3K17 A;  4N3O A;  4B3T E;  4MU0 A;  4J3D A;  4IFD D;  4GKJ I;  2DEI A;  3PS2 A;  1ZXN A;  4OZE A;  1USU A;  2C39 A;  1HR0 I;  1XMO I;  1FWK A;  2UUA I;  2UXB E;  4NXM I;  2BM0 A;  4ED4 A;  2BM1 A;  1XNR I;  4DV1 I;  3P3E A;  3WU5 A;  3M7N D;  2HK2 A;  4DV6 I;  4NXN E;  3P3C A;  4BA2 B;  4WUD A;  4DV0 E;  4JYA I;  4DR7 E;  1A6F A;  2AE8 A;  3PRY A;  4AIM A;  4R1F A;  1B63 A;  2IOP A;  4FWH A;  3Q6M A;  3P76 A;  1E3P A;  5LMU E;  1KIJ A;  4LF6 E;  4OO1 C;  3LPS A;  4BA1 A;  1KKH A;  2IER A;  2PO2 A;  3JAM C;  4DV7 I;  4DV2 E;  1IBK I;  2UXC I;  2BV3 A;  2NN6 B;  1UDQ A;  2LJP A;  1PIE A;  4QNK A;  3ZZ0 A;  4LFA E;  4EMD A;  2WNR A;  1EI1 A;  3JAM Q;  2UXD E;  1N0U A;  2BA0 D;  1D6T A;  1Z0W A;  3U1Y A;  2WW4 A;  4HAC A;  1RHY A;  2VQF I;  4LF4 I;  4JI8 E;  1N34 I;  1KTV A;  4DR2 E;  3B78 A;  1VI7 A;  1Z59 A;  2F4V E;  4YHH I;  1UDO A;  4DU8 A;  1Z0V A;  4IFD C;  3H1C A;  1H73 A;  1IBL E;  2V2Z A;  4LCF A;  4JV5 I;  4FW6 A;  5EKW A;  4AM3 A;  4FW5 A;  4FWG A;  1PKP A;  4WUB A;  1I94 E;  2R3V A;  4JI4 E;  5C0X E;  4LPF A;  2JE6 A;  1Z5C A;  1P42 A;  1ZM4 A;  1KVK A;  1FJG I;  4K0K E;  1U2R A;  4B3M E;  3Q1Q A;  4LF5 E;  2VQE I;  4DV4 I;  2XEX A;  4LFC I;  4DU7 A;  1HK7 A;  4ISA A;  2VES A;  1XMQ I;  2CVE A;  5GMD A;  2O1T A;  4DPT A;  2JT2 A;  3U1K A;  4Z7Y A;  4JI0 I;  4DPY A;  2E5L E;  4OO1 F;  2C37 B;  2BR2 B;  1Z0G A;  1N33 I;  4X64 E;  5C0X B;  2V34 A;  3K85 A;  3LNU A;  5BR8 I;  2C38 B;  1S16 A;  4X66 I;  3OTO E;  4DPW A;  4DR5 I;  4URL A;  4KQV A;  1N36 I;  1N32 E;  4DUZ I;  4IS9 A;  1Z0B A;  2AJ4 A;  4MQY A;  5LMN I;  4X65 I;  2UUC E;  2PNZ A;  5DNX A;  2HHH I;  4YY3 I;  4JI3 E;  4FWD A;  2EFG A;  3K1J A;  4OO1 E;  4X62 E;  3P06 A;  4UT4 A;  3PS3 A;  4AQY E;  4M1K A;  3WU4 A;  4B3T I;  2DEJ A;  2JEA A;  1OYR A;  1YHC A;  4IFD F;  1H74 A;  1HNW I;  4OO1 A;  2GO4 A;  1IBM E;  5JEA B;  4QNJ A;  4DR1 E;  4LF9 E;  2UXB I;  2X36 A;  4LF7 I;  5K36 D;  5EL9 A;  4JI5 E;  4OX9 E;  4DR4 I;  5K36 F;  4JI7 I;  2C39 B;  2WP8 A;  5DNL A;  2UUB E;  4DV0 I;  4GKJ E;  4B3S E;  4FW9 A;  4IZJ A;  2J7K A;  3P3G A;  1XMO E;  3J81 Q;  4IFD E;  4HYM A;  1XNR E;  5LL6 R;  3B8H A;  3ZKB A;  4DPU A;  4JI1 I;  4DV2 I;  4OKG A;  3D4J A;  3T1Y I;  3LTO A;  5DRQ A;  3UHM A;  1HNZ E;  4IFD A;  4BA1 B;  1ZM2 A;  4MU4 A;  4P52 A;  1USV A;  1Z0E A;  2PO2 B;  3WU3 A;  3ZKD A;  2ZM6 E;  4KHP E;  4JG4 A;  1RRE A;  2UXD I;  1J5E E;  2Z5C A;  1E3H A;  4FW3 A;  3QT8 A;  2PO0 A;  3GME A;  4USK A;  5K36 A;  1UEK A;  4DR3 I;  1H7U A;  2WNR B;  1IBK E;  3ZZT A;  2UXC E;  4JI8 I;  3NZK A;  2Z5B A;  3B4T A;  4MYT A;  3H4L A;  4DUY E;  4DR2 I;  4U3B A;  4B3R E;  3DD6 A;  2GQ0 A;  3M6A A;  4DPX A;  4HAC B;  4UTG A;  2Q2E B;  1IBL I;  2O3Z A;  1ZXM A;  4FW7 A;  5IWA E;  1Z5A A;  2JEB A;  2V2Q A;  1WUU A;  4MU3 A;  4GQU A;  2VQF E;  5K36 C;  4LF4 E;  3PYG A;  4YHH E;  2NPF A;  5IT9 Q;  1NHJ A;  4K0K I;  1DAR A;  4LFB E;  1ZM3 A;  3HJC A;  2JE6 B;  4JV5 E;  1NHH A;  3F0N A; 
#chains in the Genus database with same CATH homology
 5DRQ A;  4LCF A;  2JT2 A;  4LCG A;  3UHM A;  4FW6 A;  2O3Z A;  4FW7 A;  4MDT A;  2GO3 A;  4FW5 A;  3PS3 A;  4LCH A;  1YH8 A;  3U1Y A;  4FW3 A;  4J3D A;  3PS1 A;  2IES A;  3P76 A;  3PS2 A;  4FW4 A;  3P3G A;  1YHC A;  5DRO A;  4OZE A;  1XXE A;  1P42 A;  4U3D A;  5DRR A;  2GO4 A;  2IER A;  2J65 A;  4IS9 A;  3NZK A;  4MQY A;  4U3B A;  4ISA A;  3P3E A;  2VES A;  5DRP A;  4OKG A;  3P3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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