3PS1A

Crystal structure of the escherichia coli lpxc/lpc-011 complex
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
300
structure length
300
Chain Sequence
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold.
pubmed doi rcsb
source organism Escherichia coli ihe3034
molecule tags Hydrolase/antibiotic
total genus 83
structure length 300
sequence length 300
ec nomenclature ec 3.5.1.-:
pdb deposition date 2010-11-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3ps1A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3ps1A02
2GO4A 5DRPA 3P3EA 2J65A 4LCHA 4FW5A 2VESA 3P3CA 1YHCA 2IERA 4OKGA 4U3DA 4FW4A 5DRRA 4ISAA 4IS9A 4U3BA 3PS1A 2IESA 2JT2A 5DROA 2O3ZA 3UHMA 3P76A 4MDTA 4FW7A 5DRQA 3P3GA 3U1YA 4FW6A 3NZKA 3PS2A 4LCFA 1XXEA 4LCGA 2GO3A 4MQYA 3PS3A 4J3DA 1P42A 1YH8A 4OZEA 4FW3A
chains in the Genus database with same CATH superfamily
1PIEA 5DRPA 4OX9I 5LL6R 5JEAE 1HNWE 2BA0D 1USUA 5DRRA 4ZVIA 4DUZI 5FWKA 3T1HE 1J5EI 4DPXA 4LFBE 1ZM2A 4OX9E 1H7SA 2O3ZA 5DNLA 3QT8A 1QZRA 1IBME 3CWVA 4HACA 3K1JA 2PNLA 2BA1G 5K36E 1OJ4A 1S4EA 4DUZE 2Z5BB 3K85A 4IFDD 4P52A 4GQUA 3ZKBA 3J80Q 4USKA 4OO1A 5C0XA 2EFGA 4B3RI 1HK7A 3P3CA 2PNMA 4EMDA 3Q6NA 1FI4A 3H4LA 4DV7E 2PO1B 3HKMA 4LF8I 3L7ZB 4IS9A 4MU3A 3M85G 1Z0CA 3B78A 2ZM6I 4JI4E 2UXCI 2JT2A 4B3RE 2HKEA 3J81C 3U1KA 1EA6A 2X36A 2C39B 1XNQI 4JI8I 2AE8A 4B3TE 2ZM6E 2UXCE 1XMOE 3PYGA 4DR2I 2OI2A 3KRNA 3GLLA 4PRVA 3QT5A 1XNQE 1D6TA 4QNJA 4K0KI 3D4JA 4IZJB 4JI8E 2IOPA 4JV5I 1B62A 4LF7E 4DU7A 1Y6ZA 4IFDA 2VQEE 2ZITA 4LF5E 1N36I 2UUAI 4DR5I 2V2ZA 3V5RA 2V2QA 3PS3A 3LTOA 2UXDI 1Z0VA 2CG9A 4DV1I 2J65A 4DV5I 1E3PA 2VESA 4JI6E 2PNZB 2UUCI 1N36E 4FW4A 2UUAE 1FWKA 1H72C 2HK2A 4IZJD 1UDNA 4DV5E 5FLXC 4GKJI 1FWLA 2UUCE 2V2VA 2Z5BA 1XXEA 1VISA 3JAMC 2DEJA 1I94I 4GKJE 4OZEA 2WNRB 4LCHA 2Q2EB 1Z0BA 2A2CA 4R1FA 1XMQI 2HKJA 2PO1A 2E1RA 4U3BA 4QNKA 4MYTA 1I94E 4DR6E 4Z7CA 1N0UA 2ZBKB 3GMEA 3U1YA 3P3GA 4FW9A 1ZM4A 3GCMA 1HNWI 1XMQE 2C39A 2R3VA 2PO0A 3CDIA 4IZKB 4MQYA 1USVA 2O1UA 2IOQA 3T1HI 5C0XE 4LF6I 1N33E 4DV4E 4X65I 1MX0A 1IBMI 2UU9I 4JYAE 4IZJA 3Q1QA 5IWAI 4LF6E 5DROA 1U2RA 4X65E 2GQ0A 2JE6A 1Y4SA 2BV3A 2UU9E 2V34A 2Z5EA 4FWGA 4X66I 4DV7I 3M7NG 2WP8B 4N3OA 1NHHA 5IWAE 4HYMA 1YH8A 4PU9A 2NPFA 4DXLA 3OTOI 4JI4I 1IBKI 4GKKE 4DV3I 1EI1A 4X66E 1MG7A 2BM0A 1UEKA 1HNZE 4LOMA 4WUDA 4FN5A 3B8HA 5DNXA 3OTOE 3PYEA 4B3TI 1XMOI 2Z5CB 4XTJA 1IBKE 3QT6A 4DV3E 4IFDE 1ZXMA 4FW6A 5A2QC 4RPFA 2BA1D 2F1DA 3WU5A 5IT9Q 2WNRA 4LF7I 1OYPA 4BA2B 1N34E 1WUUA 1XNRE 2VQEI 1Z59A 4JI0I 4LF5I 2O1TA 1XHKA 4MU4A 2XEXA 1FKAE 3WU4A 3WU3A 2O1VA 4JI7E 3M85D 5JEAF 3QT7A 3B82A 1S16A 4JI5E 3P06A 4BA1B 4JI6I 4LF4I 4JI0E 2GO3A 2NN6B 5LMUI 4DUYE 2PO2A 3J7AM 2DEIA 2JEBB 4FWDA 4NXMI 4FW5A 2C38B 1Y60A 2WW4A 4LF4E 5K36F 4KQVA 3ZZ0A 5LMUE 2LJPA 4PRXA 1PKPA 5ELWA 1Z5AA 4NXME 4JG4A 2E5LE 1ZXNA 1Y5YA 3GONA 3J7AG 1HR0E 2CZ9A 4LFAI 2WP8A 3ZKDA 4LPFA 4OO1B 2NN6D 2F4VE 5JEAB 3J80C 4DR6I 3P3EA 4UT4A 1RREA 2UXBI 4LFAE 1N32I 4P7AA 1H74A 3L7ZA 4DV0I 3PS1A 4JI1E 3J81Q 2HHHI 3ZZTA 3H1CA 5EL9A 4DPYA 2UUBI 2C37B 1HNXI 5DRQA 4FW7A 2Z5CA 4DR7I 1R6MA 1N33I 2UXBE 3T1YE 5K36B 4DV4I 4LCFA 4UTGA 1N32E 1E3HA 4DR3I 4JYAI 2BM1A 4X62I 4DV0E 2HHHE 1Z5BA 4URLA 1HNXE 2UUBE 2BA0G 3PYFA 4FW3A 1NZ0A 4DR7E 1H73A 1KKHA 4BA2A 2BR2B 5JEAD 2VQFI 5L3JA 4DR3E 4ISAA 1VI7A 1R6LA 1UDSA 3LNUA 4MYUA 4X62E 4WUBA 3M6AA 3PYDA 4MDTA 2O1WA 2VQFE 3PRYA 3PS2A 4BA1A 4GKKI 1Z5CA 2NN6A 5K36D 4AQYI 2R42A 5GMEA 2JEBA 1HNZI 2AJ4A 4MU1A 2IERA 2C38A 4JI3I 2PNZA 1KIJA 4Z7YA 4AQYE 4LF9I 1B63A 4DR4E 2J7KA 2A2DA 5FLXQ 2NN6F 1KVKA 1ELOA 1Z0EA 2JEAB 5BR8I 1FNMA 3HULA 4B3MI 4AIDA 1IBLI 4JI3E 4NXNI 3JAMQ 3DD6A 4YY3I 1N34I 3ZZUA 1ZM3A 4JI2I 4LF9E 1J5EE 1XNRI 4FWHA 5BR8E 4B3ME 3M7ND 1OYSA 1IBLE 5JEAA 4I3HA 1KTVA 3ZM7A 4NXNE 4YY3E 3K17A 4JI7I 4U3DA 4JI2E 4ED4A 4JI5I 3B4TA 4KHPI 2CGEA 2HK3A 2IESA 1Z0WA 4DUYI 1N0VC 2C37A 4OO1F 5C0XF 3P76A 2X7IA 4DV2I 5K36A 4LF8E 2PO0B 4DU8A 4M1KA 4KHPE 2NN6C 3HJCA 4IZKA 1P42A 3CDJA 2GO4A 4B3SI 1MU5A 4DPUA 4DV2E 4OKGA 2V8PA 2E5LI 2BR2A 4HXZA 2VF3A 1H7UA 1HR0I 4DR2E 1FJGI 1DARA 4B3SE 2JE6B 4HY1A 4HACB 2F4VI 4MU0A 4K0KE 1RR9A 5LMNI 4JV5E 4LCGA 1A6FA 4AM3A 1FJGE 4DV6I 4OO1C 5C0XC 5C0XB 4JI1I 1Z0GA 5JEAC 4AIMA 1YHCA 4IFDF 5LMNE 4DR5E 3T1YI 2GS8A 4NBQA 5GMDA 3WU6A 4DPWA 4YHHI 4DV6E 2UXDE 1UDQA 4DV1E 2JEAA 1NHJA 2HFSA 5A2QQ 3NZKA 4DPTA 5K36C 1RHYA 2HFUA 1K47A 4LFCI 4X64I 2NN6E 4YHHE 4J3DA 4DR1I 1PVGA 5IT9C 3LPSA 4OO1D 1NHIA 5C0XD 4USMA 4LFCE 4X64E 3Q6MA 1BKNA 4DR1E 4WUCA 3UHMA 3F0NA 1Y4UA 4IFDC 4IFDB 1ZM9A 2CVEA 5EKWA 1Z0TA 1OYRA 1UDOA 2PO2B 3V2UC 4OO1E 4DR4I 4LFBI
chains in the Genus database with same CATH topology
2GO4A 5DRPA 3P3EA 2J65A 4LCHA 4FW5A 2VESA 3P3CA 1YHCA 2IERA 4OKGA 4U3DA 4FW4A 5DRRA 4ISAA 4IS9A 4U3BA 3PS1A 2IESA 2JT2A 5DROA 2O3ZA 3UHMA 3P76A 4MDTA 4FW7A 5DRQA 3P3GA 3U1YA 4FW6A 3NZKA 3PS2A 4LCFA 1XXEA 4LCGA 2GO3A 4MQYA 3PS3A 4J3DA 1P42A 1YH8A 4OZEA 4FW3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GO4 A;  5DRP A;  3P3E A;  2J65 A;  4LCH A;  4FW5 A;  2VES A;  3P3C A;  1YHC A;  2IER A;  4OKG A;  4U3D A;  4FW4 A;  5DRR A;  4ISA A;  4IS9 A;  4U3B A;  3PS1 A;  2IES A;  2JT2 A;  5DRO A;  2O3Z A;  3UHM A;  3P76 A;  4MDT A;  4FW7 A;  5DRQ A;  3P3G A;  3U1Y A;  4FW6 A;  3NZK A;  3PS2 A;  4LCF A;  1XXE A;  4LCG A;  2GO3 A;  4MQY A;  3PS3 A;  4J3D A;  1P42 A;  1YH8 A;  4OZE A;  4FW3 A; 
#chains in the Genus database with same CATH topology
 1PIE A;  5DRP A;  4OX9 I;  5LL6 R;  5JEA E;  1HNW E;  2BA0 D;  1USU A;  5DRR A;  4ZVI A;  4DUZ I;  5FWK A;  3T1H E;  1J5E I;  4DPX A;  4LFB E;  1ZM2 A;  4OX9 E;  1H7S A;  2O3Z A;  5DNL A;  3QT8 A;  1QZR A;  1IBM E;  3CWV A;  4HAC A;  3K1J A;  2PNL A;  2BA1 G;  5K36 E;  1OJ4 A;  1S4E A;  4DUZ E;  2Z5B B;  3K85 A;  4IFD D;  4P52 A;  4GQU A;  3ZKB A;  3J80 Q;  4USK A;  4OO1 A;  5C0X A;  2EFG A;  4B3R I;  1HK7 A;  3P3C A;  2PNM A;  4EMD A;  3Q6N A;  1FI4 A;  3H4L A;  4DV7 E;  2PO1 B;  3HKM A;  4LF8 I;  3L7Z B;  4IS9 A;  4MU3 A;  3M85 G;  1Z0C A;  3B78 A;  2ZM6 I;  4JI4 E;  2UXC I;  2JT2 A;  4B3R E;  2HKE A;  3J81 C;  3U1K A;  1EA6 A;  2X36 A;  2C39 B;  1XNQ I;  4JI8 I;  2AE8 A;  4B3T E;  2ZM6 E;  2UXC E;  1XMO E;  3PYG A;  4DR2 I;  2OI2 A;  3KRN A;  3GLL A;  4PRV A;  3QT5 A;  1XNQ E;  1D6T A;  4QNJ A;  4K0K I;  3D4J A;  4IZJ B;  4JI8 E;  2IOP A;  4JV5 I;  1B62 A;  4LF7 E;  4DU7 A;  1Y6Z A;  4IFD A;  2VQE E;  2ZIT A;  4LF5 E;  1N36 I;  2UUA I;  4DR5 I;  2V2Z A;  3V5R A;  2V2Q A;  3PS3 A;  3LTO A;  2UXD I;  1Z0V A;  2CG9 A;  4DV1 I;  2J65 A;  4DV5 I;  1E3P A;  2VES A;  4JI6 E;  2PNZ B;  2UUC I;  1N36 E;  4FW4 A;  2UUA E;  1FWK A;  1H72 C;  2HK2 A;  4IZJ D;  1UDN A;  4DV5 E;  5FLX C;  4GKJ I;  1FWL A;  2UUC E;  2V2V A;  2Z5B A;  1XXE A;  1VIS A;  3JAM C;  2DEJ A;  1I94 I;  4GKJ E;  4OZE A;  2WNR B;  4LCH A;  2Q2E B;  1Z0B A;  2A2C A;  4R1F A;  1XMQ I;  2HKJ A;  2PO1 A;  2E1R A;  4U3B A;  4QNK A;  4MYT A;  1I94 E;  4DR6 E;  4Z7C A;  1N0U A;  2ZBK B;  3GME A;  3U1Y A;  3P3G A;  4FW9 A;  1ZM4 A;  3GCM A;  1HNW I;  1XMQ E;  2C39 A;  2R3V A;  2PO0 A;  3CDI A;  4IZK B;  4MQY A;  1USV A;  2O1U A;  2IOQ A;  3T1H I;  5C0X E;  4LF6 I;  1N33 E;  4DV4 E;  4X65 I;  1MX0 A;  1IBM I;  2UU9 I;  4JYA E;  4IZJ A;  3Q1Q A;  5IWA I;  4LF6 E;  5DRO A;  1U2R A;  4X65 E;  2GQ0 A;  2JE6 A;  1Y4S A;  2BV3 A;  2UU9 E;  2V34 A;  2Z5E A;  4FWG A;  4X66 I;  4DV7 I;  3M7N G;  2WP8 B;  4N3O A;  1NHH A;  5IWA E;  4HYM A;  1YH8 A;  4PU9 A;  2NPF A;  4DXL A;  3OTO I;  4JI4 I;  1IBK I;  4GKK E;  4DV3 I;  1EI1 A;  4X66 E;  1MG7 A;  2BM0 A;  1UEK A;  1HNZ E;  4LOM A;  4WUD A;  4FN5 A;  3B8H A;  5DNX A;  3OTO E;  3PYE A;  4B3T I;  1XMO I;  2Z5C B;  4XTJ A;  1IBK E;  3QT6 A;  4DV3 E;  4IFD E;  1ZXM A;  4FW6 A;  5A2Q C;  4RPF A;  2BA1 D;  2F1D A;  3WU5 A;  5IT9 Q;  2WNR A;  4LF7 I;  1OYP A;  4BA2 B;  1N34 E;  1WUU A;  1XNR E;  2VQE I;  1Z59 A;  4JI0 I;  4LF5 I;  2O1T A;  1XHK A;  4MU4 A;  2XEX A;  1FKA E;  3WU4 A;  3WU3 A;  2O1V A;  4JI7 E;  3M85 D;  5JEA F;  3QT7 A;  3B82 A;  1S16 A;  4JI5 E;  3P06 A;  4BA1 B;  4JI6 I;  4LF4 I;  4JI0 E;  2GO3 A;  2NN6 B;  5LMU I;  4DUY E;  2PO2 A;  3J7A M;  2DEI A;  2JEB B;  4FWD A;  4NXM I;  4FW5 A;  2C38 B;  1Y60 A;  2WW4 A;  4LF4 E;  5K36 F;  4KQV A;  3ZZ0 A;  5LMU E;  2LJP A;  4PRX A;  1PKP A;  5ELW A;  1Z5A A;  4NXM E;  4JG4 A;  2E5L E;  1ZXN A;  1Y5Y A;  3GON A;  3J7A G;  1HR0 E;  2CZ9 A;  4LFA I;  2WP8 A;  3ZKD A;  4LPF A;  4OO1 B;  2NN6 D;  2F4V E;  5JEA B;  3J80 C;  4DR6 I;  3P3E A;  4UT4 A;  1RRE A;  2UXB I;  4LFA E;  1N32 I;  4P7A A;  1H74 A;  3L7Z A;  4DV0 I;  3PS1 A;  4JI1 E;  3J81 Q;  2HHH I;  3ZZT A;  3H1C A;  5EL9 A;  4DPY A;  2UUB I;  2C37 B;  1HNX I;  5DRQ A;  4FW7 A;  2Z5C A;  4DR7 I;  1R6M A;  1N33 I;  2UXB E;  3T1Y E;  5K36 B;  4DV4 I;  4LCF A;  4UTG A;  1N32 E;  1E3H A;  4DR3 I;  4JYA I;  2BM1 A;  4X62 I;  4DV0 E;  2HHH E;  1Z5B A;  4URL A;  1HNX E;  2UUB E;  2BA0 G;  3PYF A;  4FW3 A;  1NZ0 A;  4DR7 E;  1H73 A;  1KKH A;  4BA2 A;  2BR2 B;  5JEA D;  2VQF I;  5L3J A;  4DR3 E;  4ISA A;  1VI7 A;  1R6L A;  1UDS A;  3LNU A;  4MYU A;  4X62 E;  4WUB A;  3M6A A;  3PYD A;  4MDT A;  2O1W A;  2VQF E;  3PRY A;  3PS2 A;  4BA1 A;  4GKK I;  1Z5C A;  2NN6 A;  5K36 D;  4AQY I;  2R42 A;  5GME A;  2JEB A;  1HNZ I;  2AJ4 A;  4MU1 A;  2IER A;  2C38 A;  4JI3 I;  2PNZ A;  1KIJ A;  4Z7Y A;  4AQY E;  4LF9 I;  1B63 A;  4DR4 E;  2J7K A;  2A2D A;  5FLX Q;  2NN6 F;  1KVK A;  1ELO A;  1Z0E A;  2JEA B;  5BR8 I;  1FNM A;  3HUL A;  4B3M I;  4AID A;  1IBL I;  4JI3 E;  4NXN I;  3JAM Q;  3DD6 A;  4YY3 I;  1N34 I;  3ZZU A;  1ZM3 A;  4JI2 I;  4LF9 E;  1J5E E;  1XNR I;  4FWH A;  5BR8 E;  4B3M E;  3M7N D;  1OYS A;  1IBL E;  5JEA A;  4I3H A;  1KTV A;  3ZM7 A;  4NXN E;  4YY3 E;  3K17 A;  4JI7 I;  4U3D A;  4JI2 E;  4ED4 A;  4JI5 I;  3B4T A;  4KHP I;  2CGE A;  2HK3 A;  2IES A;  1Z0W A;  4DUY I;  1N0V C;  2C37 A;  4OO1 F;  5C0X F;  3P76 A;  2X7I A;  4DV2 I;  5K36 A;  4LF8 E;  2PO0 B;  4DU8 A;  4M1K A;  4KHP E;  2NN6 C;  3HJC A;  4IZK A;  1P42 A;  3CDJ A;  2GO4 A;  4B3S I;  1MU5 A;  4DPU A;  4DV2 E;  4OKG A;  2V8P A;  2E5L I;  2BR2 A;  4HXZ A;  2VF3 A;  1H7U A;  1HR0 I;  4DR2 E;  1FJG I;  1DAR A;  4B3S E;  2JE6 B;  4HY1 A;  4HAC B;  2F4V I;  4MU0 A;  4K0K E;  1RR9 A;  5LMN I;  4JV5 E;  4LCG A;  1A6F A;  4AM3 A;  1FJG E;  4DV6 I;  4OO1 C;  5C0X C;  5C0X B;  4JI1 I;  1Z0G A;  5JEA C;  4AIM A;  1YHC A;  4IFD F;  5LMN E;  4DR5 E;  3T1Y I;  2GS8 A;  4NBQ A;  5GMD A;  3WU6 A;  4DPW A;  4YHH I;  4DV6 E;  2UXD E;  1UDQ A;  4DV1 E;  2JEA A;  1NHJ A;  2HFS A;  5A2Q Q;  3NZK A;  4DPT A;  5K36 C;  1RHY A;  2HFU A;  1K47 A;  4LFC I;  4X64 I;  2NN6 E;  4YHH E;  4J3D A;  4DR1 I;  1PVG A;  5IT9 C;  3LPS A;  4OO1 D;  1NHI A;  5C0X D;  4USM A;  4LFC E;  4X64 E;  3Q6M A;  1BKN A;  4DR1 E;  4WUC A;  3UHM A;  3F0N A;  1Y4U A;  4IFD C;  4IFD B;  1ZM9 A;  2CVE A;  5EKW A;  1Z0T A;  1OYR A;  1UDO A;  2PO2 B;  3V2U C;  4OO1 E;  4DR4 I;  4LFB I; 
#chains in the Genus database with same CATH homology
 2GO4 A;  5DRP A;  3P3E A;  2J65 A;  4LCH A;  4FW5 A;  2VES A;  3P3C A;  1YHC A;  2IER A;  4OKG A;  4U3D A;  4FW4 A;  5DRR A;  4ISA A;  4IS9 A;  4U3B A;  3PS1 A;  2IES A;  2JT2 A;  5DRO A;  2O3Z A;  3UHM A;  3P76 A;  4MDT A;  4FW7 A;  5DRQ A;  3P3G A;  3U1Y A;  4FW6 A;  3NZK A;  3PS2 A;  4LCF A;  1XXE A;  4LCG A;  2GO3 A;  4MQY A;  3PS3 A;  4J3D A;  1P42 A;  1YH8 A;  4OZE A;  4FW3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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