2F1DA

X-ray structure of imidazoleglycerol-phosphate dehydratase
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
183
structure length
183
Chain Sequence
b'GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 1
publication title Structure and mechanism of imidazoleglycerol-phosphate dehydratase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 54
structure length 183
sequence length 183
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA02
2F1DA 4MU1A 4QNKA 4QNJA 2AE8A 5DNXA 4MU3A 5EL9A 1RHYA 5ELWA 5EKWA 4LPFA 4MU0A 4LOMA 4MU4A 5DNLA 4GQUA
chains in the Genus database with same CATH superfamily
1NHIA 2HKEA 2NPFA 2HKJA 2UUAI 1R6LA 3T1HI 4DV5I 2WP8A 2PNZB 3M7ND 4FW4A 4JI4E 1OJ4A 4DR7I 4BA1A 2AE8A 4HY1A 4J3DA 1N33I 2UXBE 2JT2A 4JI5I 2JE6B 4ISAA 4YHHE 2PNLA 2C37A 4NXNI 2NN6D 5LL6R 1EI1A 2HHHE 1FWLA 2CGEA 1ZM4A 2BR2A 5JEAE 2C38B 4P52A 5EKWA 4DU8A 1UDNA 2DEJA 4DV3I 3LPSA 4K0KE 5BR8I 1J5EE 3UHMA 5K36A 1OYSA 4JYAI 3H4LA 4X66E 5JEAB 2V2ZA 1FKAE 2O1TA 1KVKA 4JI8E 4X64E 4AM3A 4LFCI 1QZRA 5JEAF 4UTGA 2A2CA 3WU5A 2WNRB 1RREA 2E5LE 4B3TE 3M85D 3Q1QA 4DV4I 4ED4A 1Y60A 5IWAE 2UU9I 4OX9E 3P3EA 1IBLE 3K17A 4JI1I 4DR1E 2IERA 1RR9A 1XMOE 1Y5YA 3D4JA 1ZM2A 2F1DA 4DU7A 1FWKA 4DR5I 2VQFI 1OYPA 1KIJA 2A2DA 3T1YE 3U1YA 1Y4UA 4LFBI 4BA2B 1KKHA 1XXEA 4JI6E 5C0XA 4KQVA 4MYTA 4X65E 4JV5I 4IZJD 4GKKI 1PKPA 5DROA 1N32E 5LMNE 4B3RI 4AIDA 4FWDA 1ZM3A 1P42A 3PS3A 4DUYE 4DR6E 1I94I 2UXBI 2UXDE 4LF5I 2PO1A 4USKA 4DV1I 1H74A 5DRPA 1ZM9A 2Z5BB 3P3CA 3QT6A 4JI2I 4LF4I 1USUA 2V8PA 2HHHI 3NZKA 2JE6A 2UXCE 3CWVA 1XMQE 4B3SI 2BA1G 3ZZUA 4USMA 2F4VE 1N36E 2NN6E 4FWHA 4XTJA 2C38A 4PU9A 4DR2I 5DRRA 4NXMI 4FN5A 1ELOA 3GONA 1IBME 1IBKE 2DEIA 2OI2A 4HXZA 4B3MI 4X64I 3B78A 3ZKBA 4JI3E 5K36D 2GS8A 4FW6A 4DR3I 2GQ0A 2CVEA 4EMDA 5JEAA 1UDSA 1HNZI 1WUUA 3WU3A 1R6MA 2HFSA 2UUBI 4OO1D 3B82A 2ZM6I 2NN6F 3KRNA 4DUZI 2PO1B 4DPWA 2E1RA 4WUDA 1Z0CA 4OO1C 3J80C 4DR1I 2WNRA 2ZBKB 2X36A 1XMOI 2CG9A 2UUCE 4DPYA 2Q2EB 2JEBA 1Z5BA 3P06A 4DV2I 3P3GA 2IESA 3T1YI 3WU6A 1FJGI 1NHHA 2BA0D 3HULA 3J7AM 4GKJI 4LFAI 4LF7E 4LF6E 2NN6C 1B63A 1HNWE 4BA2A 1XNRI 1N32I 1PVGA 1Z0TA 1FNMA 5LMNI 2IOPA 4U3BA 1VISA 1RHYA 4LF9E 4IFDD 5C0XD 1ZXMA 2HFUA 4MQYA 3QT8A 2VQEE 4JI0I 4IFDC 1HR0E 4JI7E 1HNXE 4LF8E 1Y6ZA 1N0UA 3B4TA 4URLA 5GMDA 2BV3A 3J81C 3B8HA 2UXCI 2BM1A 1MU5A 2JEBB 1N34I 2Z5BA 4MU1A 5FWKA 2O1VA 4MU3A 1XNQE 1E3HA 1N36I 2GO4A 3GLLA 4MYUA 2O1UA 3M6AA 2JEAB 2UUAE 3T1HE 2HK3A 4DV5E 4WUCA 1MG7A 4AQYE 4PRXA 4DPUA 3JAMC 3K85A 2BM0A 3PYFA 5IT9C 1Z5CA 1PIEA 4DR7E 4JI4I 2ZITA 2Z5EA 5K36E 1N33E 4KHPE 5JEAD 3V2UC 2VF3A 4OZEA 4QNKA 4JI5E 4OO1E 2V2VA 4NXNE 3L7ZB 3Q6MA 4YHHI 2IOQA 1S16A 1EA6A 3K1JA 2GO3A 4LCGA 4FW7A 4WUBA 4LF6I 1H72C 4OO1B 2EFGA 5BR8E 5LMUE 4JYAE 3OTOE 1Z0WA 4FWGA 4IZKB 5EL9A 3M7NG 5DRQA 4K0KI 1J5EI 2R42A 4Z7YA 4OO1F 4FW3A 4X66I 4JI7I 4LOMA 4JI8I 3J80Q 1NHJA 4IFDE 5C0XE 1H7UA 2NN6B 1B62A 3Q6NA 2E5LI 4B3TI 5K36C 4OKGA 2UU9E 3PRYA 3LTOA 4NBQA 4JI1E 5A2QC 5IWAI 2VESA 1YHCA 4DXLA 2Z5CB 2HK2A 1S4EA 3H1CA 4OX9I 1IBLI 1XNQI 4IFDB 3F0NA 4DR5E 2VQFE 4X62E 4IZJA 5ELWA 3P76A 4IFDF 4RPFA 5C0XF 2X7IA 2C39B 1UEKA 2V2QA 4DV7E 4JV5E 2BA1D 4ZVIA 3U1KA 4JI6I 4AQYI 4IS9A 4I3HA 3QT5A 4GKKE 3ZZTA 1OYRA 2JEAA 1DARA 4X65I 4B3RE 4YY3E 2XEXA 3HKMA 2PO2A 3PYDA 4DV0E 1Y4SA 2PO0B 3M85G 1I94E 4LPFA 4PRVA 4KHPI 3J81Q 2AJ4A 4DUYI 4LF5E 4DR6I 2CZ9A 1A6FA 4DV1E 3GCMA 5C0XC 2UXDI 2R3VA 3PS2A 5DNLA 1ZXNA 4JI2E 4FW5A 4LF4E 1U2RA 2J7KA 4MU0A 2J65A 1VI7A 1Z5AA 3HJCA 4DR4E 3L7ZA 2V34A 4B3SE 2O1WA 4IZJB 5LMUI 4HACB 1BKNA 1XMQI 4U3DA 4DR2E 4MDTA 4LCHA 3OTOI 2F4VI 4NXME 1USVA 4DPTA 4HYMA 3JAMQ 3ZKDA 3LNUA 3QT7A 2WP8B 5IT9Q 4OO1A 4B3ME 4AIMA 1IBMI 4DV6E 1IBKI 4IZKA 4M1KA 4Z7CA 4DR3E 2PO2B 4R1FA 4BA1B 4JI3I 3WU4A 2WW4A 4LCFA 1HNZE 1UDOA 2UUBE 2ZM6E 4JG4A 4DUZE 1H7SA 1D6TA 3PS1A 2O3ZA 2C37B 2NN6A 4LFBE 1Z0EA 2PNMA 3PYGA 5L3JA 2UUCI 4X62I 1FI4A 2BR2B 3V5RA 4DV2E 3PYEA 5JEAC 1FJGE 4GQUA 1E3PA 2Z5CA 4GKJE 4IFDA 4LFAE 4DV7I 5K36B 1N0VC 4N3OA 3J7AG 1Z0GA 3CDJA 3GMEA 1XNRE 4UT4A 4DV3E 4LF7I 4YY3I 1YH8A 5K36F 1HNWI 2C39A 1NZ0A 4DV0I 1HK7A 2PNZA 1Z0BA 1UDQA 4MU4A 4JI0E 4LF9I 4QNJA 4DPXA 2VQEI 3DD6A 1HR0I 4LFCE 5A2QQ 2PO0A 1HNXI 1MX0A 5FLXQ 4LF8I 5GMEA 1Z0VA 1K47A 1Z59A 3CDIA 4DV4E 5DNXA 1N34E 4DR4I 2BA0G 1KTVA 4P7AA 5FLXC 2LJPA 1H73A 3ZM7A 3ZZ0A 5C0XB 1XHKA 4FW9A 4HACA 4DV6I
chains in the Genus database with same CATH topology
2F1DA 4MU1A 4QNKA 4QNJA 2AE8A 5DNXA 4MU3A 5EL9A 1RHYA 5ELWA 5EKWA 4LPFA 4MU0A 4LOMA 4MU4A 5DNLA 4GQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1D A;  4MU1 A;  4QNK A;  4QNJ A;  2AE8 A;  5DNX A;  4MU3 A;  5EL9 A;  1RHY A;  5ELW A;  5EKW A;  4LPF A;  4MU0 A;  4LOM A;  4MU4 A;  5DNL A;  4GQU A; 
#chains in the Genus database with same CATH topology
 1NHI A;  2HKE A;  2NPF A;  2HKJ A;  2UUA I;  1R6L A;  3T1H I;  4DV5 I;  2WP8 A;  2PNZ B;  3M7N D;  4FW4 A;  4JI4 E;  1OJ4 A;  4DR7 I;  4BA1 A;  2AE8 A;  4HY1 A;  4J3D A;  1N33 I;  2UXB E;  2JT2 A;  4JI5 I;  2JE6 B;  4ISA A;  4YHH E;  2PNL A;  2C37 A;  4NXN I;  2NN6 D;  5LL6 R;  1EI1 A;  2HHH E;  1FWL A;  2CGE A;  1ZM4 A;  2BR2 A;  5JEA E;  2C38 B;  4P52 A;  5EKW A;  4DU8 A;  1UDN A;  2DEJ A;  4DV3 I;  3LPS A;  4K0K E;  5BR8 I;  1J5E E;  3UHM A;  5K36 A;  1OYS A;  4JYA I;  3H4L A;  4X66 E;  5JEA B;  2V2Z A;  1FKA E;  2O1T A;  1KVK A;  4JI8 E;  4X64 E;  4AM3 A;  4LFC I;  1QZR A;  5JEA F;  4UTG A;  2A2C A;  3WU5 A;  2WNR B;  1RRE A;  2E5L E;  4B3T E;  3M85 D;  3Q1Q A;  4DV4 I;  4ED4 A;  1Y60 A;  5IWA E;  2UU9 I;  4OX9 E;  3P3E A;  1IBL E;  3K17 A;  4JI1 I;  4DR1 E;  2IER A;  1RR9 A;  1XMO E;  1Y5Y A;  3D4J A;  1ZM2 A;  2F1D A;  4DU7 A;  1FWK A;  4DR5 I;  2VQF I;  1OYP A;  1KIJ A;  2A2D A;  3T1Y E;  3U1Y A;  1Y4U A;  4LFB I;  4BA2 B;  1KKH A;  1XXE A;  4JI6 E;  5C0X A;  4KQV A;  4MYT A;  4X65 E;  4JV5 I;  4IZJ D;  4GKK I;  1PKP A;  5DRO A;  1N32 E;  5LMN E;  4B3R I;  4AID A;  4FWD A;  1ZM3 A;  1P42 A;  3PS3 A;  4DUY E;  4DR6 E;  1I94 I;  2UXB I;  2UXD E;  4LF5 I;  2PO1 A;  4USK A;  4DV1 I;  1H74 A;  5DRP A;  1ZM9 A;  2Z5B B;  3P3C A;  3QT6 A;  4JI2 I;  4LF4 I;  1USU A;  2V8P A;  2HHH I;  3NZK A;  2JE6 A;  2UXC E;  3CWV A;  1XMQ E;  4B3S I;  2BA1 G;  3ZZU A;  4USM A;  2F4V E;  1N36 E;  2NN6 E;  4FWH A;  4XTJ A;  2C38 A;  4PU9 A;  4DR2 I;  5DRR A;  4NXM I;  4FN5 A;  1ELO A;  3GON A;  1IBM E;  1IBK E;  2DEI A;  2OI2 A;  4HXZ A;  4B3M I;  4X64 I;  3B78 A;  3ZKB A;  4JI3 E;  5K36 D;  2GS8 A;  4FW6 A;  4DR3 I;  2GQ0 A;  2CVE A;  4EMD A;  5JEA A;  1UDS A;  1HNZ I;  1WUU A;  3WU3 A;  1R6M A;  2HFS A;  2UUB I;  4OO1 D;  3B82 A;  2ZM6 I;  2NN6 F;  3KRN A;  4DUZ I;  2PO1 B;  4DPW A;  2E1R A;  4WUD A;  1Z0C A;  4OO1 C;  3J80 C;  4DR1 I;  2WNR A;  2ZBK B;  2X36 A;  1XMO I;  2CG9 A;  2UUC E;  4DPY A;  2Q2E B;  2JEB A;  1Z5B A;  3P06 A;  4DV2 I;  3P3G A;  2IES A;  3T1Y I;  3WU6 A;  1FJG I;  1NHH A;  2BA0 D;  3HUL A;  3J7A M;  4GKJ I;  4LFA I;  4LF7 E;  4LF6 E;  2NN6 C;  1B63 A;  1HNW E;  4BA2 A;  1XNR I;  1N32 I;  1PVG A;  1Z0T A;  1FNM A;  5LMN I;  2IOP A;  4U3B A;  1VIS A;  1RHY A;  4LF9 E;  4IFD D;  5C0X D;  1ZXM A;  2HFU A;  4MQY A;  3QT8 A;  2VQE E;  4JI0 I;  4IFD C;  1HR0 E;  4JI7 E;  1HNX E;  4LF8 E;  1Y6Z A;  1N0U A;  3B4T A;  4URL A;  5GMD A;  2BV3 A;  3J81 C;  3B8H A;  2UXC I;  2BM1 A;  1MU5 A;  2JEB B;  1N34 I;  2Z5B A;  4MU1 A;  5FWK A;  2O1V A;  4MU3 A;  1XNQ E;  1E3H A;  1N36 I;  2GO4 A;  3GLL A;  4MYU A;  2O1U A;  3M6A A;  2JEA B;  2UUA E;  3T1H E;  2HK3 A;  4DV5 E;  4WUC A;  1MG7 A;  4AQY E;  4PRX A;  4DPU A;  3JAM C;  3K85 A;  2BM0 A;  3PYF A;  5IT9 C;  1Z5C A;  1PIE A;  4DR7 E;  4JI4 I;  2ZIT A;  2Z5E A;  5K36 E;  1N33 E;  4KHP E;  5JEA D;  3V2U C;  2VF3 A;  4OZE A;  4QNK A;  4JI5 E;  4OO1 E;  2V2V A;  4NXN E;  3L7Z B;  3Q6M A;  4YHH I;  2IOQ A;  1S16 A;  1EA6 A;  3K1J A;  2GO3 A;  4LCG A;  4FW7 A;  4WUB A;  4LF6 I;  1H72 C;  4OO1 B;  2EFG A;  5BR8 E;  5LMU E;  4JYA E;  3OTO E;  1Z0W A;  4FWG A;  4IZK B;  5EL9 A;  3M7N G;  5DRQ A;  4K0K I;  1J5E I;  2R42 A;  4Z7Y A;  4OO1 F;  4FW3 A;  4X66 I;  4JI7 I;  4LOM A;  4JI8 I;  3J80 Q;  1NHJ A;  4IFD E;  5C0X E;  1H7U A;  2NN6 B;  1B62 A;  3Q6N A;  2E5L I;  4B3T I;  5K36 C;  4OKG A;  2UU9 E;  3PRY A;  3LTO A;  4NBQ A;  4JI1 E;  5A2Q C;  5IWA I;  2VES A;  1YHC A;  4DXL A;  2Z5C B;  2HK2 A;  1S4E A;  3H1C A;  4OX9 I;  1IBL I;  1XNQ I;  4IFD B;  3F0N A;  4DR5 E;  2VQF E;  4X62 E;  4IZJ A;  5ELW A;  3P76 A;  4IFD F;  4RPF A;  5C0X F;  2X7I A;  2C39 B;  1UEK A;  2V2Q A;  4DV7 E;  4JV5 E;  2BA1 D;  4ZVI A;  3U1K A;  4JI6 I;  4AQY I;  4IS9 A;  4I3H A;  3QT5 A;  4GKK E;  3ZZT A;  1OYR A;  2JEA A;  1DAR A;  4X65 I;  4B3R E;  4YY3 E;  2XEX A;  3HKM A;  2PO2 A;  3PYD A;  4DV0 E;  1Y4S A;  2PO0 B;  3M85 G;  1I94 E;  4LPF A;  4PRV A;  4KHP I;  3J81 Q;  2AJ4 A;  4DUY I;  4LF5 E;  4DR6 I;  2CZ9 A;  1A6F A;  4DV1 E;  3GCM A;  5C0X C;  2UXD I;  2R3V A;  3PS2 A;  5DNL A;  1ZXN A;  4JI2 E;  4FW5 A;  4LF4 E;  1U2R A;  2J7K A;  4MU0 A;  2J65 A;  1VI7 A;  1Z5A A;  3HJC A;  4DR4 E;  3L7Z A;  2V34 A;  4B3S E;  2O1W A;  4IZJ B;  5LMU I;  4HAC B;  1BKN A;  1XMQ I;  4U3D A;  4DR2 E;  4MDT A;  4LCH A;  3OTO I;  2F4V I;  4NXM E;  1USV A;  4DPT A;  4HYM A;  3JAM Q;  3ZKD A;  3LNU A;  3QT7 A;  2WP8 B;  5IT9 Q;  4OO1 A;  4B3M E;  4AIM A;  1IBM I;  4DV6 E;  1IBK I;  4IZK A;  4M1K A;  4Z7C A;  4DR3 E;  2PO2 B;  4R1F A;  4BA1 B;  4JI3 I;  3WU4 A;  2WW4 A;  4LCF A;  1HNZ E;  1UDO A;  2UUB E;  2ZM6 E;  4JG4 A;  4DUZ E;  1H7S A;  1D6T A;  3PS1 A;  2O3Z A;  2C37 B;  2NN6 A;  4LFB E;  1Z0E A;  2PNM A;  3PYG A;  5L3J A;  2UUC I;  4X62 I;  1FI4 A;  2BR2 B;  3V5R A;  4DV2 E;  3PYE A;  5JEA C;  1FJG E;  4GQU A;  1E3P A;  2Z5C A;  4GKJ E;  4IFD A;  4LFA E;  4DV7 I;  5K36 B;  1N0V C;  4N3O A;  3J7A G;  1Z0G A;  3CDJ A;  3GME A;  1XNR E;  4UT4 A;  4DV3 E;  4LF7 I;  4YY3 I;  1YH8 A;  5K36 F;  1HNW I;  2C39 A;  1NZ0 A;  4DV0 I;  1HK7 A;  2PNZ A;  1Z0B A;  1UDQ A;  4MU4 A;  4JI0 E;  4LF9 I;  4QNJ A;  4DPX A;  2VQE I;  3DD6 A;  1HR0 I;  4LFC E;  5A2Q Q;  2PO0 A;  1HNX I;  1MX0 A;  5FLX Q;  4LF8 I;  5GME A;  1Z0V A;  1K47 A;  1Z59 A;  3CDI A;  4DV4 E;  5DNX A;  1N34 E;  4DR4 I;  2BA0 G;  1KTV A;  4P7A A;  5FLX C;  2LJP A;  1H73 A;  3ZM7 A;  3ZZ0 A;  5C0X B;  1XHK A;  4FW9 A;  4HAC A;  4DV6 I; 
#chains in the Genus database with same CATH homology
 2F1D A;  4MU1 A;  4QNK A;  4QNJ A;  2AE8 A;  5DNX A;  4MU3 A;  5EL9 A;  1RHY A;  5ELW A;  5EKW A;  4LPF A;  4MU0 A;  4LOM A;  4MU4 A;  5DNL A;  4GQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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