2F1DA

X-ray structure of imidazoleglycerol-phosphate dehydratase
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
183
structure length
183
Chain Sequence
GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 1
publication title Structure and mechanism of imidazoleglycerol-phosphate dehydratase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 54
structure length 183
sequence length 183
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA02
4MU1A 4LOMA 4MU0A 5DNLA 5EKWA 4MU3A 5ELWA 4QNJA 5EL9A 5DNXA 4GQUA 4QNKA 2AE8A 4LPFA 2F1DA 4MU4A 1RHYA
chains in the Genus database with same CATH superfamily
4P52A 3ZKDA 1ELOA 1YH8A 2F1DA 1N36E 2X7IA 1UDOA 4LF8E 3ZKBA 2J65A 2NN6D 2Z5BB 5IT9C 4JI2I 1ZM2A 5L3JA 2CVEA 4AIDA 5C0XC 4LF7I 4DV2E 1NHIA 1IBLI 4JI8I 4OO1F 5C0XD 1R6MA 5FLXC 1XMOE 4X66E 4DPTA 5DRRA 2C39A 4B3SE 4LF6E 1XNRE 2BR2B 3GMEA 2UUCI 3M7NG 2JE6A 4DR2E 5C0XA 3P76A 5LMUI 2O1VA 1Y60A 1H72C 5LL6R 1D6TA 4LCGA 4OO1D 2UUBI 3QT8A 4DV1I 4JV5I 4FW7A 2HKJA 5K36C 4Z7CA 1ZM3A 4MU1A 4DUYI 4LF7E 5A2QQ 1H7UA 2GO4A 4BA1A 2ZITA 2V34A 4JI8E 1HR0E 3U1YA 4URLA 5GMEA 3J80Q 1Y4SA 3B8HA 1EI1A 4FW5A 1Z5BA 3B4TA 5K36A 2NN6E 2ZBKB 5BR8I 4P7AA 1HK7A 4MQYA 1RREA 2NN6B 5IWAI 2C38A 3J7AG 3CDIA 2UXDI 3GCMA 4B3RE 4LF4I 2UU9I 4BA2B 1Z0WA 4I3HA 1KIJA 4FWDA 1WUUA 2XEXA 4NBQA 3P3GA 1NHJA 4X64I 4JI6I 2UXBI 4EMDA 4OKGA 1U2RA 2E1RA 2V2QA 3PS3A 4OO1E 1ZM4A 5DNLA 3K85A 3L7ZA 2PO1B 4OO1B 2J7KA 1A6FA 4HXZA 5ELWA 1UDSA 1ZM9A 3T1YE 4N3OA 2UXDE 2Z5CA 4HYMA 4DR3I 2WP8B 3WU6A 1N33I 4DUZI 3CWVA 1USUA 4JI6E 1MG7A 4X64E 2UXBE 3NZKA 4LCFA 1RR9A 4WUDA 4AQYI 4MU0A 1N0VC 2IESA 1YHCA 2DEJA 3T1HE 4JI5I 1P42A 2LJPA 2HK3A 4MYTA 1OYSA 1H74A 2E5LI 2JEAA 4Z7YA 5LMNI 4HACB 2BA1D 4WUCA 1Y6ZA 2HHHI 1UEKA 1I94I 1RHYA 4DR5E 4U3BA 1HNZI 2O1WA 4DR3E 1VI7A 1ZXMA 4IZJA 3JAMQ 4LFCE 1IBMI 1FWKA 2A2DA 5C0XF 4AQYE 1MU5A 4DV5I 2BV3A 2GO3A 4DV3E 2PO0B 2UUAI 4IZKB 3J81Q 2PNZA 2C37A 4UT4A 1IBKE 4K0KI 2CZ9A 5GMDA 4X62I 2JEBB 1E3PA 2DEIA 2Z5EA 2VQFE 4JI4I 4LF5I 2HHHE 3Q1QA 4FWHA 4JI7E 1N34E 4NXMI 2WNRA 3PYFA 4KHPI 1HNXI 4JG4A 3P06A 4DR1I 4IS9A 5K36F 1J5EI 3P3CA 4DV5E 2PNMA 4USMA 4DV0I 1FI4A 4JI2E 2HK2A 2IERA 1PKPA 1NZ0A 4X62E 1FJGI 2EFGA 4DV6I 4X65I 4LOMA 1VISA 4MU4A 1IBLE 3QT6A 5K36D 4LF5E 4JI4E 1Z59A 1OYRA 4DV7I 4GKKI 2UUCE 4HY1A 4IFDC 3ZZTA 2BA0D 5LMUE 2BM0A 4DR1E 1XMQI 2VESA 2UUBE 5DROA 2GQ0A 4LPFA 2PO2A 4DV1E 4JYAI 2C39B 4LF9I 5C0XE 4JV5E 1FNMA 4IFDA 4WUBA 2ZM6I 3H1CA 3WU4A 2JE6B 5JEAC 4MU3A 4YY3I 2V8PA 5C0XB 4DUYE 1Z5CA 1KVKA 4LFAI 3CDJA 1Y4UA 3GLLA 1BKNA 1OYPA 2BM1A 1S4EA 4PRVA 4DR7I 4GKKE 2R3VA 1Z0BA 5JEAA 2O3ZA 5BR8E 3D4JA 5IT9Q 4BA1B 5IWAE 4FW6A 4LFBI 5K36E 4LF4E 4DU8A 4GQUA 2UU9E 2VQEI 5FLXQ 3HKMA 4PRXA 3K1JA 5K36B 4DPUA 3GONA 4QNKA 4OX9I 1S16A 2Q2EB 4NXNI 4B3TI 4LFAE 4U3DA 1FWLA 4DR6I 1Z0TA 2C38B 3Q6NA 4DPXA 1Z0VA 2UXCI 3P3EA 4AIMA 2Z5BA 1MX0A 2V2VA 5A2QC 3HJCA 4YHHI 3HULA 1PVGA 4IZJD 3J80C 4LFBE 2F4VI 3OTOI 2CG9A 4USKA 1N33E 1XXEA 2HFUA 2BR2A 1Z5AA 4DUZE 1B62A 5EL9A 1OJ4A 3L7ZB 4AM3A 3M85D 5FWKA 1N0UA 2WW4A 4R1FA 4NXNE 5DNXA 2BA1G 4DV4I 2GS8A 3ZZ0A 4JI5E 2Z5CB 1XMOI 2HFSA 1XNRI 4B3SI 4LF6I 4M1KA 3PS2A 3M85G 2E5LE 4JI3I 4DR2I 1QZRA 5LMNE 4LCHA 1KTVA 2F4VE 1ZXNA 3OTOE 1I94E 2NN6C 1HNZE 1N32I 1FKAE 3B78A 1EA6A 1Z0EA 2A2CA 3PRYA 1IBME 3F0NA 3U1KA 1KKHA 2JEAB 3M7ND 4DV4E 3J7AM 4MDTA 1NHHA 1K47A 2NPFA 2NN6A 1XNQI 3QT5A 2UUAE 1HR0I 1Z0CA 4K0KE 4DU7A 4FN5A 4BA2A 3UHMA 3K17A 2R42A 1H7SA 4IZJB 4B3MI 4IFDF 1B63A 4J3DA 4JI3E 4PU9A 4UTGA 4OO1C 3LNUA 3LPSA 1PIEA 4FW3A 2HKEA 4XTJA 1Y5YA 1DARA 4NXME 1N32E 4OZEA 4JI0I 4JI7I 4KHPE 2PNZB 1HNXE 2C37B 4B3RI 4IFDD 2PO1A 2IOPA 4OO1A 5JEAF 1J5EE 4ISAA 1UDQA 2IOQA 3WU3A 1XNQE 2O1TA 3PYGA 4DV0E 2JT2A 4JI1I 2BA0G 2WNRB 3JAMC 2CGEA 1FJGE 2WP8A 4B3ME 4DV6E 4FW4A 4X65E 3V5RA 3DD6A 2AE8A 5JEAD 3H4LA 4ZVIA 5DRPA 4QNJA 4DV7E 1HNWI 2AJ4A 4FWGA 3J81C 4JI0E 3T1YI 4DPYA 4GKJI 1USVA 1Z0GA 1H73A 4ED4A 4RPFA 1XMQE 5DRQA 4DXLA 4JYAE 4LF9E 3PYDA 4HACA 3ZZUA 2PNLA 3WU5A 2ZM6E 4JI1E 4YY3E 3T1HI 3Q6MA 1XHKA 4FW9A 3B82A 4IFDE 4DR4I 1E3HA 3LTOA 2PO2B 4DR7E 1HNWE 1UDNA 4IFDB 2PO0A 2X36A 4IZKA 4DR5I 1R6LA 2VF3A 4GKJE 3M6AA 2O1UA 2JEBA 3PYEA 4LFCI 5JEAE 1N36I 4LF8I 3QT7A 4KQVA 2VQEE 3PS1A 3V2UC 4DV3I 5JEAB 5EKWA 3KRNA 4OX9E 4B3TE 1IBKI 3ZM7A 4MYUA 2V2ZA 4DR6E 4DV2I 2OI2A 4DR4E 4X66I 2VQFI 2UXCE 2NN6F 4DPWA 4YHHE 1N34I
chains in the Genus database with same CATH topology
4MU1A 4LOMA 4MU0A 5DNLA 5EKWA 4MU3A 5ELWA 4QNJA 5EL9A 5DNXA 4GQUA 4QNKA 2AE8A 4LPFA 2F1DA 4MU4A 1RHYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU1 A;  4LOM A;  4MU0 A;  5DNL A;  5EKW A;  4MU3 A;  5ELW A;  4QNJ A;  5EL9 A;  5DNX A;  4GQU A;  4QNK A;  2AE8 A;  4LPF A;  2F1D A;  4MU4 A;  1RHY A; 
#chains in the Genus database with same CATH topology
 4P52 A;  3ZKD A;  1ELO A;  1YH8 A;  2F1D A;  1N36 E;  2X7I A;  1UDO A;  4LF8 E;  3ZKB A;  2J65 A;  2NN6 D;  2Z5B B;  5IT9 C;  4JI2 I;  1ZM2 A;  5L3J A;  2CVE A;  4AID A;  5C0X C;  4LF7 I;  4DV2 E;  1NHI A;  1IBL I;  4JI8 I;  4OO1 F;  5C0X D;  1R6M A;  5FLX C;  1XMO E;  4X66 E;  4DPT A;  5DRR A;  2C39 A;  4B3S E;  4LF6 E;  1XNR E;  2BR2 B;  3GME A;  2UUC I;  3M7N G;  2JE6 A;  4DR2 E;  5C0X A;  3P76 A;  5LMU I;  2O1V A;  1Y60 A;  1H72 C;  5LL6 R;  1D6T A;  4LCG A;  4OO1 D;  2UUB I;  3QT8 A;  4DV1 I;  4JV5 I;  4FW7 A;  2HKJ A;  5K36 C;  4Z7C A;  1ZM3 A;  4MU1 A;  4DUY I;  4LF7 E;  5A2Q Q;  1H7U A;  2GO4 A;  4BA1 A;  2ZIT A;  2V34 A;  4JI8 E;  1HR0 E;  3U1Y A;  4URL A;  5GME A;  3J80 Q;  1Y4S A;  3B8H A;  1EI1 A;  4FW5 A;  1Z5B A;  3B4T A;  5K36 A;  2NN6 E;  2ZBK B;  5BR8 I;  4P7A A;  1HK7 A;  4MQY A;  1RRE A;  2NN6 B;  5IWA I;  2C38 A;  3J7A G;  3CDI A;  2UXD I;  3GCM A;  4B3R E;  4LF4 I;  2UU9 I;  4BA2 B;  1Z0W A;  4I3H A;  1KIJ A;  4FWD A;  1WUU A;  2XEX A;  4NBQ A;  3P3G A;  1NHJ A;  4X64 I;  4JI6 I;  2UXB I;  4EMD A;  4OKG A;  1U2R A;  2E1R A;  2V2Q A;  3PS3 A;  4OO1 E;  1ZM4 A;  5DNL A;  3K85 A;  3L7Z A;  2PO1 B;  4OO1 B;  2J7K A;  1A6F A;  4HXZ A;  5ELW A;  1UDS A;  1ZM9 A;  3T1Y E;  4N3O A;  2UXD E;  2Z5C A;  4HYM A;  4DR3 I;  2WP8 B;  3WU6 A;  1N33 I;  4DUZ I;  3CWV A;  1USU A;  4JI6 E;  1MG7 A;  4X64 E;  2UXB E;  3NZK A;  4LCF A;  1RR9 A;  4WUD A;  4AQY I;  4MU0 A;  1N0V C;  2IES A;  1YHC A;  2DEJ A;  3T1H E;  4JI5 I;  1P42 A;  2LJP A;  2HK3 A;  4MYT A;  1OYS A;  1H74 A;  2E5L I;  2JEA A;  4Z7Y A;  5LMN I;  4HAC B;  2BA1 D;  4WUC A;  1Y6Z A;  2HHH I;  1UEK A;  1I94 I;  1RHY A;  4DR5 E;  4U3B A;  1HNZ I;  2O1W A;  4DR3 E;  1VI7 A;  1ZXM A;  4IZJ A;  3JAM Q;  4LFC E;  1IBM I;  1FWK A;  2A2D A;  5C0X F;  4AQY E;  1MU5 A;  4DV5 I;  2BV3 A;  2GO3 A;  4DV3 E;  2PO0 B;  2UUA I;  4IZK B;  3J81 Q;  2PNZ A;  2C37 A;  4UT4 A;  1IBK E;  4K0K I;  2CZ9 A;  5GMD A;  4X62 I;  2JEB B;  1E3P A;  2DEI A;  2Z5E A;  2VQF E;  4JI4 I;  4LF5 I;  2HHH E;  3Q1Q A;  4FWH A;  4JI7 E;  1N34 E;  4NXM I;  2WNR A;  3PYF A;  4KHP I;  1HNX I;  4JG4 A;  3P06 A;  4DR1 I;  4IS9 A;  5K36 F;  1J5E I;  3P3C A;  4DV5 E;  2PNM A;  4USM A;  4DV0 I;  1FI4 A;  4JI2 E;  2HK2 A;  2IER A;  1PKP A;  1NZ0 A;  4X62 E;  1FJG I;  2EFG A;  4DV6 I;  4X65 I;  4LOM A;  1VIS A;  4MU4 A;  1IBL E;  3QT6 A;  5K36 D;  4LF5 E;  4JI4 E;  1Z59 A;  1OYR A;  4DV7 I;  4GKK I;  2UUC E;  4HY1 A;  4IFD C;  3ZZT A;  2BA0 D;  5LMU E;  2BM0 A;  4DR1 E;  1XMQ I;  2VES A;  2UUB E;  5DRO A;  2GQ0 A;  4LPF A;  2PO2 A;  4DV1 E;  4JYA I;  2C39 B;  4LF9 I;  5C0X E;  4JV5 E;  1FNM A;  4IFD A;  4WUB A;  2ZM6 I;  3H1C A;  3WU4 A;  2JE6 B;  5JEA C;  4MU3 A;  4YY3 I;  2V8P A;  5C0X B;  4DUY E;  1Z5C A;  1KVK A;  4LFA I;  3CDJ A;  1Y4U A;  3GLL A;  1BKN A;  1OYP A;  2BM1 A;  1S4E A;  4PRV A;  4DR7 I;  4GKK E;  2R3V A;  1Z0B A;  5JEA A;  2O3Z A;  5BR8 E;  3D4J A;  5IT9 Q;  4BA1 B;  5IWA E;  4FW6 A;  4LFB I;  5K36 E;  4LF4 E;  4DU8 A;  4GQU A;  2UU9 E;  2VQE I;  5FLX Q;  3HKM A;  4PRX A;  3K1J A;  5K36 B;  4DPU A;  3GON A;  4QNK A;  4OX9 I;  1S16 A;  2Q2E B;  4NXN I;  4B3T I;  4LFA E;  4U3D A;  1FWL A;  4DR6 I;  1Z0T A;  2C38 B;  3Q6N A;  4DPX A;  1Z0V A;  2UXC I;  3P3E A;  4AIM A;  2Z5B A;  1MX0 A;  2V2V A;  5A2Q C;  3HJC A;  4YHH I;  3HUL A;  1PVG A;  4IZJ D;  3J80 C;  4LFB E;  2F4V I;  3OTO I;  2CG9 A;  4USK A;  1N33 E;  1XXE A;  2HFU A;  2BR2 A;  1Z5A A;  4DUZ E;  1B62 A;  5EL9 A;  1OJ4 A;  3L7Z B;  4AM3 A;  3M85 D;  5FWK A;  1N0U A;  2WW4 A;  4R1F A;  4NXN E;  5DNX A;  2BA1 G;  4DV4 I;  2GS8 A;  3ZZ0 A;  4JI5 E;  2Z5C B;  1XMO I;  2HFS A;  1XNR I;  4B3S I;  4LF6 I;  4M1K A;  3PS2 A;  3M85 G;  2E5L E;  4JI3 I;  4DR2 I;  1QZR A;  5LMN E;  4LCH A;  1KTV A;  2F4V E;  1ZXN A;  3OTO E;  1I94 E;  2NN6 C;  1HNZ E;  1N32 I;  1FKA E;  3B78 A;  1EA6 A;  1Z0E A;  2A2C A;  3PRY A;  1IBM E;  3F0N A;  3U1K A;  1KKH A;  2JEA B;  3M7N D;  4DV4 E;  3J7A M;  4MDT A;  1NHH A;  1K47 A;  2NPF A;  2NN6 A;  1XNQ I;  3QT5 A;  2UUA E;  1HR0 I;  1Z0C A;  4K0K E;  4DU7 A;  4FN5 A;  4BA2 A;  3UHM A;  3K17 A;  2R42 A;  1H7S A;  4IZJ B;  4B3M I;  4IFD F;  1B63 A;  4J3D A;  4JI3 E;  4PU9 A;  4UTG A;  4OO1 C;  3LNU A;  3LPS A;  1PIE A;  4FW3 A;  2HKE A;  4XTJ A;  1Y5Y A;  1DAR A;  4NXM E;  1N32 E;  4OZE A;  4JI0 I;  4JI7 I;  4KHP E;  2PNZ B;  1HNX E;  2C37 B;  4B3R I;  4IFD D;  2PO1 A;  2IOP A;  4OO1 A;  5JEA F;  1J5E E;  4ISA A;  1UDQ A;  2IOQ A;  3WU3 A;  1XNQ E;  2O1T A;  3PYG A;  4DV0 E;  2JT2 A;  4JI1 I;  2BA0 G;  2WNR B;  3JAM C;  2CGE A;  1FJG E;  2WP8 A;  4B3M E;  4DV6 E;  4FW4 A;  4X65 E;  3V5R A;  3DD6 A;  2AE8 A;  5JEA D;  3H4L A;  4ZVI A;  5DRP A;  4QNJ A;  4DV7 E;  1HNW I;  2AJ4 A;  4FWG A;  3J81 C;  4JI0 E;  3T1Y I;  4DPY A;  4GKJ I;  1USV A;  1Z0G A;  1H73 A;  4ED4 A;  4RPF A;  1XMQ E;  5DRQ A;  4DXL A;  4JYA E;  4LF9 E;  3PYD A;  4HAC A;  3ZZU A;  2PNL A;  3WU5 A;  2ZM6 E;  4JI1 E;  4YY3 E;  3T1H I;  3Q6M A;  1XHK A;  4FW9 A;  3B82 A;  4IFD E;  4DR4 I;  1E3H A;  3LTO A;  2PO2 B;  4DR7 E;  1HNW E;  1UDN A;  4IFD B;  2PO0 A;  2X36 A;  4IZK A;  4DR5 I;  1R6L A;  2VF3 A;  4GKJ E;  3M6A A;  2O1U A;  2JEB A;  3PYE A;  4LFC I;  5JEA E;  1N36 I;  4LF8 I;  3QT7 A;  4KQV A;  2VQE E;  3PS1 A;  3V2U C;  4DV3 I;  5JEA B;  5EKW A;  3KRN A;  4OX9 E;  4B3T E;  1IBK I;  3ZM7 A;  4MYU A;  2V2Z A;  4DR6 E;  4DV2 I;  2OI2 A;  4DR4 E;  4X66 I;  2VQF I;  2UXC E;  2NN6 F;  4DPW A;  4YHH E;  1N34 I; 
#chains in the Genus database with same CATH homology
 4MU1 A;  4LOM A;  4MU0 A;  5DNL A;  5EKW A;  4MU3 A;  5ELW A;  4QNJ A;  5EL9 A;  5DNX A;  4GQU A;  4QNK A;  2AE8 A;  4LPF A;  2F1D A;  4MU4 A;  1RHY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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