2F1DA

X-ray structure of imidazoleglycerol-phosphate dehydratase
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
183
structure length
183
Chain Sequence
GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 1
publication title Structure and mechanism of imidazoleglycerol-phosphate dehydratase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 54
structure length 183
sequence length 183
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA02
5EKWA 4LOMA 5ELWA 4QNJA 4MU3A 4LPFA 5DNLA 4GQUA 5DNXA 5EL9A 4QNKA 2AE8A 4MU0A 1RHYA 4MU1A 2F1DA 4MU4A
chains in the Genus database with same CATH superfamily
4JI6I 3Q1QA 1H72C 3M7ND 4LF6I 4LFAE 3F0NA 1NZ0A 1E3PA 4NXME 2C38A 4I3HA 4JI2E 1ZM4A 1Z0WA 3ZKBA 1HNWE 4DPWA 4X65I 5A2QQ 3J7AG 4KQVA 2Z5BA 4LFCI 1R6LA 2JE6B 4Z7YA 5K36B 4DR6I 4GKKE 2ZBKB 5DROA 4QNKA 5C0XC 2UXDE 2BR2A 4DV5I 2ZITA 2O1VA 1PIEA 4LF6E 2VESA 4DR4I 4LPFA 4P7AA 4X65E 1XNQI 2Q2EB 1DARA 4DV1I 3P06A 4LFCE 4FW7A 2V2QA 4DR6E 4IZKB 1MG7A 4URLA 2R3VA 1HNXI 2V8PA 4MU4A 3T1YE 4DV5E 4LF4I 2HKJA 4LFBI 4DV7I 4DR4E 1Z0TA 4LOMA 4DR1I 3KRNA 2PO1B 2BA1G 4HACA 3QT5A 1Z59A 4GKJE 4DV1E 1Y4UA 5C0XF 1FJGI 3HULA 1HNXE 4JI7E 5K36F 4OO1A 4LF4E 1RR9A 1N33I 4DUZI 4DR3I 4DV7E 3J80C 2PNZB 3GMEA 4X62E 3QT8A 4USKA 4B3RI 2BV3A 4BA1A 2UUBE 3M6AA 2V34A 2HFUA 5LMUI 1IBLE 4FW5A 2IOPA 4DR5I 4DUZE 2WW4A 2E5LI 3U1KA 2UXBI 5DNXA 4WUCA 1OYPA 1FKAE 4KHPI 3PYGA 4IZJA 2C37A 2JEBB 4BA2B 2CZ9A 3WU3A 4LF9I 4B3RE 1N34E 4YY3I 2UXCE 2DEJA 4DR7E 3ZZUA 2NN6A 2X36A 2VQEE 2JT2A 1XXEA 1VI7A 3P3CA 3WU6A 1S4EA 5IWAE 2E5LE 2OI2A 2UXBE 1FI4A 4PRVA 1XNRI 4KHPE 1Z5AA 3ZM7A 4LF9E 4FWHA 4IFDD 2XEXA 3PS2A 1K47A 2C38B 4QNJA 4FW9A 1J5EI 4IFDE 4NBQA 3P3EA 4LFAI 4AIMA 4JI4I 2O1UA 2Z5BB 3WU4A 1N32I 4AM3A 4DV6I 4MU0A 1HNWI 1Y6ZA 3PRYA 1EI1A 5C0XD 1Z0CA 3V5RA 4GKKI 5JEAA 4IFDB 1OYSA 1KTVA 2A2DA 2V2VA 1J5EE 3LNUA 4IFDC 4JI4E 3J81Q 4DPTA 1N32E 2CVEA 1MU5A 4DV6E 5C0XB 1XMOE 1H73A 1UDNA 3WU5A 1D6TA 2C39A 2PO2B 2UUCI 1N0UA 3H4LA 2WNRA 1UDQA 4HY1A 4OZEA 5DRQA 2O1TA 2UU9I 4OO1E 3T1YI 2LJPA 2O1WA 3L7ZA 4AIDA 2GS8A 3PYEA 4WUDA 4ED4A 4B3TE 3QT7A 1Z0GA 4GKJI 4EMDA 2UUCE 1ZM2A 4DU7A 2AJ4A 1P42A 4PU9A 2UU9E 1Y60A 2PO0B 5ELWA 4JI7I 3M7NG 4IFDF 4OO1C 5IT9Q 1ZM3A 1YH8A 4JI8E 4BA1B 2JEAA 3JAMQ 4X62I 3ZZ0A 2Z5EA 4ZVIA 2UUBI 4DPUA 4JI1E 1HR0I 2R42A 2VF3A 1VISA 1R6MA 1NHJA 2NN6E 1KVKA 1YHCA 3OTOE 1IBLI 2JE6A 2WP8B 3K85A 5K36A 1USVA 4FW4A 4U3BA 1N36I 3P3GA 2NN6B 1N34I 2PNMA 1HR0E 1XMQI 3DD6A 2UXCI 4IS9A 4X66I 2VQFE 4DR7I 5GMDA 3J7AM 2NN6C 2ZM6I 4OO1F 2BA0D 2VQEI 3B82A 4Z7CA 1HK7A 5IWAI 4B3SE 5L3JA 5JEAE 1N36E 3NZKA 4MU1A 2IERA 4DV4E 4DR2I 4UTGA 4X64I 2O3ZA 5EL9A 1XMQE 2NPFA 4N3OA 3J81C 1S16A 5BR8I 2Z5CA 4X66E 2PO1A 2ZM6E 1U2RA 3LPSA 5A2QC 1PVGA 2HFSA 3B8HA 5EKWA 3PS3A 3GCMA 4DV0I 5FWKA 1ZM9A 3PS1A 5JEAC 1Z0BA 4UT4A 4FW3A 1HNZI 4DR2E 3ZZTA 4X64E 2PNZA 5BR8E 2NN6F 2F1DA 4YHHE 4DPYA 1FWKA 2BM1A 3U1YA 4FN5A 4NXNE 1XMOI 1NHIA 2BR2B 2EFGA 1I94E 4DV0E 4K0KE 3J80Q 4USMA 1EA6A 1OYRA 4DUYI 3V2UC 5IT9C 1HNZE 3GLLA 4DXLA 4AQYI 3QT6A 3JAMC 4B3TI 4BA2A 4P52A 4PRXA 2AE8A 3M85D 4JI5I 2HKEA 2CGEA 4DV2E 2X7IA 5JEAF 1KKHA 3LTOA 3PYFA 1Y4SA 4OO1D 1Z0EA 4DUYE 4XTJA 1FWLA 1PKPA 4AQYE 4HACB 5K36E 4JI8I 2F4VE 4JV5E 2E1RA 4JI5E 2BA1D 4MQYA 4JI1I 4OO1B 3OTOI 5GMEA 4DV3I 2GO4A 4OX9E 1KIJA 4IZJD 2HHHE 2IESA 4JI6E 4FWDA 5K36C 4IFDA 3GONA 3M85G 4RPFA 5LMNI 3HJCA 4MU3A 1WUUA 4GQUA 2NN6D 5FLXQ 2VQFI 4DPXA 2DEIA 1USUA 3HKMA 4IZJB 2C37B 5C0XA 4DV3E 1RREA 1UDSA 4JI0I 4B3SI 2PO2A 3K17A 5LMNE 4LF5I 2Z5CB 3B78A 4U3DA 4DV4I 1H7UA 2A2CA 1XNQE 2PNLA 4J3DA 1E3HA 1QZRA 2IOQA 5LL6R 3Q6NA 5DNLA 3ZKDA 1RHYA 4LCGA 2J7KA 4JI0E 1OJ4A 1ZXMA 2UUAI 5JEAD 4LFBE 4IZKA 1UDOA 5DRPA 4R1FA 2PO0A 4B3MI 4DR1E 4LF5E 4LF7I 4LF8I 4WUBA 3CWVA 4M1KA 1N0VC 4FW6A 1Y5YA 2GO3A 4HYMA 4YHHI 1Z0VA 1FJGE 5JEAB 1B62A 4NXNI 2UUAE 3PYDA 4JI3I 1N33E 4OKGA 3CDJA 4HXZA 4DR3E 1IBMI 1I94I 1XHKA 4JG4A 2HK3A 4B3ME 4K0KI 1IBKI 4DU8A 4LF7E 4MDTA 4LF8E 2CG9A 1BKNA 2WP8A 1ELOA 1Z5BA 2BA0G 4JYAI 2C39B 5LMUE 2WNRB 2BM0A 1MX0A 3P76A 1NHHA 4JI3E 4DR5E 3T1HI 3D4JA 4LCHA 4DV2I 1IBME 1A6FA 2J65A 3UHMA 3L7ZB 4MYUA 1IBKE 3Q6MA 5DRRA 2HK2A 4ISAA 4YY3E 1Z5CA 3B4TA 1H7SA 2F4VI 2JEBA 4JYAE 1ZXNA 4JV5I 4NXMI 4FWGA 2UXDI 1UEKA 4LCFA 4JI2I 3T1HE 3CDIA 5FLXC 3K1JA 1XNRE 1H74A 2GQ0A 2JEAB 5C0XE 3H1CA 5K36D 4OX9I 1FNMA 1B63A 2V2ZA 4MYTA 2HHHI
chains in the Genus database with same CATH topology
5EKWA 4LOMA 5ELWA 4QNJA 4MU3A 4LPFA 5DNLA 4GQUA 5DNXA 5EL9A 4QNKA 2AE8A 4MU0A 1RHYA 4MU1A 2F1DA 4MU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EKW A;  4LOM A;  5ELW A;  4QNJ A;  4MU3 A;  4LPF A;  5DNL A;  4GQU A;  5DNX A;  5EL9 A;  4QNK A;  2AE8 A;  4MU0 A;  1RHY A;  4MU1 A;  2F1D A;  4MU4 A; 
#chains in the Genus database with same CATH topology
 4JI6 I;  3Q1Q A;  1H72 C;  3M7N D;  4LF6 I;  4LFA E;  3F0N A;  1NZ0 A;  1E3P A;  4NXM E;  2C38 A;  4I3H A;  4JI2 E;  1ZM4 A;  1Z0W A;  3ZKB A;  1HNW E;  4DPW A;  4X65 I;  5A2Q Q;  3J7A G;  4KQV A;  2Z5B A;  4LFC I;  1R6L A;  2JE6 B;  4Z7Y A;  5K36 B;  4DR6 I;  4GKK E;  2ZBK B;  5DRO A;  4QNK A;  5C0X C;  2UXD E;  2BR2 A;  4DV5 I;  2ZIT A;  2O1V A;  1PIE A;  4LF6 E;  2VES A;  4DR4 I;  4LPF A;  4P7A A;  4X65 E;  1XNQ I;  2Q2E B;  1DAR A;  4DV1 I;  3P06 A;  4LFC E;  4FW7 A;  2V2Q A;  4DR6 E;  4IZK B;  1MG7 A;  4URL A;  2R3V A;  1HNX I;  2V8P A;  4MU4 A;  3T1Y E;  4DV5 E;  4LF4 I;  2HKJ A;  4LFB I;  4DV7 I;  4DR4 E;  1Z0T A;  4LOM A;  4DR1 I;  3KRN A;  2PO1 B;  2BA1 G;  4HAC A;  3QT5 A;  1Z59 A;  4GKJ E;  4DV1 E;  1Y4U A;  5C0X F;  1FJG I;  3HUL A;  1HNX E;  4JI7 E;  5K36 F;  4OO1 A;  4LF4 E;  1RR9 A;  1N33 I;  4DUZ I;  4DR3 I;  4DV7 E;  3J80 C;  2PNZ B;  3GME A;  4X62 E;  3QT8 A;  4USK A;  4B3R I;  2BV3 A;  4BA1 A;  2UUB E;  3M6A A;  2V34 A;  2HFU A;  5LMU I;  1IBL E;  4FW5 A;  2IOP A;  4DR5 I;  4DUZ E;  2WW4 A;  2E5L I;  3U1K A;  2UXB I;  5DNX A;  4WUC A;  1OYP A;  1FKA E;  4KHP I;  3PYG A;  4IZJ A;  2C37 A;  2JEB B;  4BA2 B;  2CZ9 A;  3WU3 A;  4LF9 I;  4B3R E;  1N34 E;  4YY3 I;  2UXC E;  2DEJ A;  4DR7 E;  3ZZU A;  2NN6 A;  2X36 A;  2VQE E;  2JT2 A;  1XXE A;  1VI7 A;  3P3C A;  3WU6 A;  1S4E A;  5IWA E;  2E5L E;  2OI2 A;  2UXB E;  1FI4 A;  4PRV A;  1XNR I;  4KHP E;  1Z5A A;  3ZM7 A;  4LF9 E;  4FWH A;  4IFD D;  2XEX A;  3PS2 A;  1K47 A;  2C38 B;  4QNJ A;  4FW9 A;  1J5E I;  4IFD E;  4NBQ A;  3P3E A;  4LFA I;  4AIM A;  4JI4 I;  2O1U A;  2Z5B B;  3WU4 A;  1N32 I;  4AM3 A;  4DV6 I;  4MU0 A;  1HNW I;  1Y6Z A;  3PRY A;  1EI1 A;  5C0X D;  1Z0C A;  3V5R A;  4GKK I;  5JEA A;  4IFD B;  1OYS A;  1KTV A;  2A2D A;  2V2V A;  1J5E E;  3LNU A;  4IFD C;  4JI4 E;  3J81 Q;  4DPT A;  1N32 E;  2CVE A;  1MU5 A;  4DV6 E;  5C0X B;  1XMO E;  1H73 A;  1UDN A;  3WU5 A;  1D6T A;  2C39 A;  2PO2 B;  2UUC I;  1N0U A;  3H4L A;  2WNR A;  1UDQ A;  4HY1 A;  4OZE A;  5DRQ A;  2O1T A;  2UU9 I;  4OO1 E;  3T1Y I;  2LJP A;  2O1W A;  3L7Z A;  4AID A;  2GS8 A;  3PYE A;  4WUD A;  4ED4 A;  4B3T E;  3QT7 A;  1Z0G A;  4GKJ I;  4EMD A;  2UUC E;  1ZM2 A;  4DU7 A;  2AJ4 A;  1P42 A;  4PU9 A;  2UU9 E;  1Y60 A;  2PO0 B;  5ELW A;  4JI7 I;  3M7N G;  4IFD F;  4OO1 C;  5IT9 Q;  1ZM3 A;  1YH8 A;  4JI8 E;  4BA1 B;  2JEA A;  3JAM Q;  4X62 I;  3ZZ0 A;  2Z5E A;  4ZVI A;  2UUB I;  4DPU A;  4JI1 E;  1HR0 I;  2R42 A;  2VF3 A;  1VIS A;  1R6M A;  1NHJ A;  2NN6 E;  1KVK A;  1YHC A;  3OTO E;  1IBL I;  2JE6 A;  2WP8 B;  3K85 A;  5K36 A;  1USV A;  4FW4 A;  4U3B A;  1N36 I;  3P3G A;  2NN6 B;  1N34 I;  2PNM A;  1HR0 E;  1XMQ I;  3DD6 A;  2UXC I;  4IS9 A;  4X66 I;  2VQF E;  4DR7 I;  5GMD A;  3J7A M;  2NN6 C;  2ZM6 I;  4OO1 F;  2BA0 D;  2VQE I;  3B82 A;  4Z7C A;  1HK7 A;  5IWA I;  4B3S E;  5L3J A;  5JEA E;  1N36 E;  3NZK A;  4MU1 A;  2IER A;  4DV4 E;  4DR2 I;  4UTG A;  4X64 I;  2O3Z A;  5EL9 A;  1XMQ E;  2NPF A;  4N3O A;  3J81 C;  1S16 A;  5BR8 I;  2Z5C A;  4X66 E;  2PO1 A;  2ZM6 E;  1U2R A;  3LPS A;  5A2Q C;  1PVG A;  2HFS A;  3B8H A;  5EKW A;  3PS3 A;  3GCM A;  4DV0 I;  5FWK A;  1ZM9 A;  3PS1 A;  5JEA C;  1Z0B A;  4UT4 A;  4FW3 A;  1HNZ I;  4DR2 E;  3ZZT A;  4X64 E;  2PNZ A;  5BR8 E;  2NN6 F;  2F1D A;  4YHH E;  4DPY A;  1FWK A;  2BM1 A;  3U1Y A;  4FN5 A;  4NXN E;  1XMO I;  1NHI A;  2BR2 B;  2EFG A;  1I94 E;  4DV0 E;  4K0K E;  3J80 Q;  4USM A;  1EA6 A;  1OYR A;  4DUY I;  3V2U C;  5IT9 C;  1HNZ E;  3GLL A;  4DXL A;  4AQY I;  3QT6 A;  3JAM C;  4B3T I;  4BA2 A;  4P52 A;  4PRX A;  2AE8 A;  3M85 D;  4JI5 I;  2HKE A;  2CGE A;  4DV2 E;  2X7I A;  5JEA F;  1KKH A;  3LTO A;  3PYF A;  1Y4S A;  4OO1 D;  1Z0E A;  4DUY E;  4XTJ A;  1FWL A;  1PKP A;  4AQY E;  4HAC B;  5K36 E;  4JI8 I;  2F4V E;  4JV5 E;  2E1R A;  4JI5 E;  2BA1 D;  4MQY A;  4JI1 I;  4OO1 B;  3OTO I;  5GME A;  4DV3 I;  2GO4 A;  4OX9 E;  1KIJ A;  4IZJ D;  2HHH E;  2IES A;  4JI6 E;  4FWD A;  5K36 C;  4IFD A;  3GON A;  3M85 G;  4RPF A;  5LMN I;  3HJC A;  4MU3 A;  1WUU A;  4GQU A;  2NN6 D;  5FLX Q;  2VQF I;  4DPX A;  2DEI A;  1USU A;  3HKM A;  4IZJ B;  2C37 B;  5C0X A;  4DV3 E;  1RRE A;  1UDS A;  4JI0 I;  4B3S I;  2PO2 A;  3K17 A;  5LMN E;  4LF5 I;  2Z5C B;  3B78 A;  4U3D A;  4DV4 I;  1H7U A;  2A2C A;  1XNQ E;  2PNL A;  4J3D A;  1E3H A;  1QZR A;  2IOQ A;  5LL6 R;  3Q6N A;  5DNL A;  3ZKD A;  1RHY A;  4LCG A;  2J7K A;  4JI0 E;  1OJ4 A;  1ZXM A;  2UUA I;  5JEA D;  4LFB E;  4IZK A;  1UDO A;  5DRP A;  4R1F A;  2PO0 A;  4B3M I;  4DR1 E;  4LF5 E;  4LF7 I;  4LF8 I;  4WUB A;  3CWV A;  4M1K A;  1N0V C;  4FW6 A;  1Y5Y A;  2GO3 A;  4HYM A;  4YHH I;  1Z0V A;  1FJG E;  5JEA B;  1B62 A;  4NXN I;  2UUA E;  3PYD A;  4JI3 I;  1N33 E;  4OKG A;  3CDJ A;  4HXZ A;  4DR3 E;  1IBM I;  1I94 I;  1XHK A;  4JG4 A;  2HK3 A;  4B3M E;  4K0K I;  1IBK I;  4DU8 A;  4LF7 E;  4MDT A;  4LF8 E;  2CG9 A;  1BKN A;  2WP8 A;  1ELO A;  1Z5B A;  2BA0 G;  4JYA I;  2C39 B;  5LMU E;  2WNR B;  2BM0 A;  1MX0 A;  3P76 A;  1NHH A;  4JI3 E;  4DR5 E;  3T1H I;  3D4J A;  4LCH A;  4DV2 I;  1IBM E;  1A6F A;  2J65 A;  3UHM A;  3L7Z B;  4MYU A;  1IBK E;  3Q6M A;  5DRR A;  2HK2 A;  4ISA A;  4YY3 E;  1Z5C A;  3B4T A;  1H7S A;  2F4V I;  2JEB A;  4JYA E;  1ZXN A;  4JV5 I;  4NXM I;  4FWG A;  2UXD I;  1UEK A;  4LCF A;  4JI2 I;  3T1H E;  3CDI A;  5FLX C;  3K1J A;  1XNR E;  1H74 A;  2GQ0 A;  2JEA B;  5C0X E;  3H1C A;  5K36 D;  4OX9 I;  1FNM A;  1B63 A;  2V2Z A;  4MYT A;  2HHH I; 
#chains in the Genus database with same CATH homology
 5EKW A;  4LOM A;  5ELW A;  4QNJ A;  4MU3 A;  4LPF A;  5DNL A;  4GQU A;  5DNX A;  5EL9 A;  4QNK A;  2AE8 A;  4MU0 A;  1RHY A;  4MU1 A;  2F1D A;  4MU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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