2F1DA

X-ray structure of imidazoleglycerol-phosphate dehydratase
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
183
structure length
183
Chain Sequence
b'GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 1
publication title Structure and mechanism of imidazoleglycerol-phosphate dehydratase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 54
structure length 183
sequence length 183
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA02
4MU4A 1RHYA 5DNXA 4LPFA 2AE8A 4MU0A 4MU1A 4LOMA 2F1DA 5DNLA 5EKWA 5ELWA 5EL9A 4QNKA 4QNJA 4MU3A 4GQUA
chains in the Genus database with same CATH superfamily
4DR5I 3ZM7A 2AE8A 2A2DA 1KTVA 3L7ZA 4IZKA 5FLXC 1HR0E 4R1FA 2O1VA 3OTOI 4RPFA 2O1WA 3L7ZB 4IZKB 4LF7I 4JYAI 2CZ9A 3J80Q 2E5LE 4JI2E 1XXEA 5C0XD 4GKKI 4DR3E 3B82A 2NN6D 1IBKI 1BKNA 2UUCE 2VQEE 2IOQA 3V5RA 3QT8A 2JT2A 1UDOA 2UUAE 4DV4E 1UDQA 1MG7A 2BR2A 1Z0CA 3HJCA 5K36C 4DPWA 5FLXQ 2IERA 1IBMI 1FJGE 4KHPI 1Z5AA 2Z5BA 4LF8I 2J65A 4OO1D 4JV5E 5BR8E 2DEIA 1H73A 3GONA 3Q1QA 2V8PA 2BR2B 2O3ZA 4B3TE 1FI4A 4MU0A 4LF5E 2Z5BB 3H1CA 4B3SI 3PS2A 4JI5E 1DARA 4YHHI 1KIJA 1XMOI 2A2CA 4FW4A 3M85G 2PNMA 3T1HE 4GKJI 2O1TA 4EMDA 1B62A 1N32I 2VF3A 1P42A 1ZM2A 2HKEA 5LMNE 4DV1E 4JI3I 4QNKA 2BA0D 4FW6A 3ZZTA 2PO0A 1R6LA 1NHHA 3ZKBA 4USMA 4JI8E 2IESA 1HNWI 4GQUA 4UT4A 1HNXE 3P3EA 2J7KA 4HACA 4FWHA 3M7NG 2BM1A 2Z5EA 2O1UA 2PO0B 2EFGA 5DRQA 4WUCA 4DPYA 5JEAF 4HACB 4PU9A 1XNRE 4DR5E 1Z0GA 1Y60A 1Z59A 4MU1A 1XNQI 4JI0E 2PO2A 3U1KA 5C0XE 5ELWA 5C0XA 4HY1A 5K36F 1HNZE 1S16A 4ED4A 3T1YI 2NN6A 5GMDA 2CG9A 4FWGA 4HYMA 4DR2I 2BA0G 2HFUA 4LF7E 2PO2B 1PVGA 5C0XB 2UU9I 1YH8A 2NN6B 4X62E 4K0KI 4FW3A 4FW7A 1Z0TA 5LMUI 2BM0A 2WNRA 3NZKA 2R42A 4P7AA 4PRXA 4DV0E 4OO1A 4HXZA 4OO1E 4DU7A 1FNMA 4DV7E 3J7AM 2HHHI 1XHKA 4AIMA 2VQFI 4JI1E 4LCHA 2HK2A 2WNRB 1N0VC 4DUZI 4LF6E 4DR4E 4OO1B 2PNLA 1I94I 4YY3E 2VESA 2R3VA 4MYUA 3ZKDA 1UEKA 1IBLI 4B3SE 4NBQA 2V2QA 1N36E 1XMOE 4LF9E 4LFCE 1K47A 4OX9E 4JI7I 3P3GA 4B3RI 5JEAC 3DD6A 5IT9C 5IWAE 2UUBE 1OJ4A 5FWKA 3M6AA 4X64E 4DR6E 5A2QC 4NXMI 1XMQE 1WUUA 1FWKA 3PYEA 4LFAE 2UXDE 3CWVA 3F0NA 4IFDF 1EA6A 1J5EE 2F4VI 1ZM3A 3CDJA 4LF4E 1PKPA 5K36E 1Z5CA 4I3HA 1Y6ZA 1H74A 4NXNE 4DV3E 3LNUA 5DRRA 3LTOA 4JI4E 4URLA 1OYPA 4AM3A 2NPFA 4JI6E 5IT9Q 3K17A 3P3CA 1MU5A 4DV2E 3QT5A 1HR0I 1Z0WA 5A2QQ 3WU6A 4UTGA 1Y4UA 1ZM9A 4AQYE 1VI7A 4DR7E 4DR1E 4WUDA 1ZXNA 1N33E 4DPXA 4DR3I 1UDNA 3Q6MA 1H7SA 3B78A 4X66E 2C38A 2GO3A 3PS1A 1RREA 2Z5CA 2HKJA 5JEAD 2UUCI 1YHCA 4DPUA 3PS3A 3D4JA 4FW5A 1E3HA 4DV4I 1H7UA 1N34E 1RR9A 3ZZ0A 2C38B 2ZM6I 5K36D 2Z5CB 2UXBE 1FJGI 2UXCE 4PRVA 2WP8A 1RHYA 1PIEA 2E1RA 4DV6I 5BR8I 4FWDA 4IFDC 3OTOE 4B3TI 2OI2A 4LF5I 5DNLA 2WP8B 1ZM4A 4OKGA 4MDTA 4JI5I 1FWLA 4OZEA 3WU4A 4U3BA 2JE6A 4JYAE 5DROA 4GKKE 3GMEA 2NN6C 3QT6A 3T1HI 4B3MI 1IBKE 2XEXA 3LPSA 3WU5A 2JE6B 5LMNI 3ZZUA 1ELOA 4WUBA 4DV1I 4FW9A 4MQYA 4ISAA 4LCFA 2CVEA 1IBME 5GMEA 4KHPE 5EKWA 4JI8I 4LF8E 4LFBI 1MX0A 1HNXI 4DU8A 5DNXA 4ZVIA 4DUYI 1Z0BA 4M1KA 4Z7YA 2V2VA 1NZ0A 4DV5I 4X65I 3PYGA 2DEJA 3PRYA 4YHHE 4P52A 2ZITA 3J7AG 1XNRI 1E3PA 4MU3A 4GKJE 2JEBA 1HK7A 4BA2A 2X36A 4JI0I 1N32E 3CDIA 4IFDD 4KQVA 1HNZI 2AJ4A 1FKAE 4JI3E 5JEAE 5JEAA 1EI1A 2JEBB 2V34A 4BA2B 4BA1A 3P06A 2V2ZA 1HNWE 4X62I 1Z0VA 3M85D 1KKHA 5LL6R 5K36A 4U3DA 5JEAB 4JG4A 4XTJA 4BA1B 4DV0I 5C0XF 3J81C 4IZJD 4DV7I 2NN6F 1Z5BA 1U2RA 2ZM6E 5K36B 4JI1I 4AIDA 2BV3A 2GS8A 3U1YA 2IOPA 2GQ0A 4LF6I 4DR4I 3K85A 5L3JA 4DV6E 2JEAA 4YY3I 3JAMC 1XNQE 2Q2EB 3P76A 3T1YE 3M7ND 4IS9A 4LOMA 4OO1F 4DR2E 1Y4SA 3GCMA 3H4LA 5DRPA 2JEAB 2HFSA 2E5LI 4JI2I 3K1JA 4J3DA 1N36I 2UU9E 4LF9I 4LFCI 4OX9I 3PYDA 4LCGA 4K0KE 4DXLA 1NHIA 4B3ME 1UDSA 4LPFA 3V2UC 5IWAI 3J81Q 2VQEI 5LMUE 2UUBI 2UUAI 4QNJA 1Y5YA 4X64I 4DR6I 2HHHE 1XMQI 2VQFE 3B4TA 4LFAI 3JAMQ 2UXDI 1N0UA 2X7IA 1J5EI 3WU3A 2C39A 4LFBE 4JV5I 4DUZE 1QZRA 3UHMA 1I94E 2BA1D 4LF4I 2PO1A 1ZXMA 2C37A 2F1DA 4NXNI 4DV3I 1H72C 4DUYE 2C39B 4JI4I 2ZBKB 4DV5E 1IBLE 2PNZA 4IFDE 4X65E 4IFDA 2PO1B 3KRNA 5C0XC 4JI6I 2C37B 3B8HA 1R6MA 3QT7A 2WW4A 1USVA 4MYTA 4JI7E 4DV2I 4B3RE 1OYSA 2PNZB 4IFDB 4FN5A 3PYFA 1OYRA 4AQYI 1VISA 2NN6E 4MU4A 4DR7I 4NXME 4DR1I 1KVKA 5EL9A 1Z0EA 3GLLA 1N33I 4OO1C 2CGEA 2LJPA 2HK3A 4IZJA 1S4EA 2F4VE 2BA1G 4X66I 3J80C 1D6TA 1A6FA 4USKA 3Q6NA 4IZJB 1N34I 2GO4A 1B63A 4N3OA 4Z7CA 3HULA 1USUA 3HKMA 1NHJA 2UXBI 4DPTA 2UXCI
chains in the Genus database with same CATH topology
4MU4A 1RHYA 5DNXA 4LPFA 2AE8A 4MU0A 4MU1A 4LOMA 2F1DA 5DNLA 5EKWA 5ELWA 5EL9A 4QNKA 4QNJA 4MU3A 4GQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU4 A;  1RHY A;  5DNX A;  4LPF A;  2AE8 A;  4MU0 A;  4MU1 A;  4LOM A;  2F1D A;  5DNL A;  5EKW A;  5ELW A;  5EL9 A;  4QNK A;  4QNJ A;  4MU3 A;  4GQU A; 
#chains in the Genus database with same CATH topology
 4DR5 I;  3ZM7 A;  2AE8 A;  2A2D A;  1KTV A;  3L7Z A;  4IZK A;  5FLX C;  1HR0 E;  4R1F A;  2O1V A;  3OTO I;  4RPF A;  2O1W A;  3L7Z B;  4IZK B;  4LF7 I;  4JYA I;  2CZ9 A;  3J80 Q;  2E5L E;  4JI2 E;  1XXE A;  5C0X D;  4GKK I;  4DR3 E;  3B82 A;  2NN6 D;  1IBK I;  1BKN A;  2UUC E;  2VQE E;  2IOQ A;  3V5R A;  3QT8 A;  2JT2 A;  1UDO A;  2UUA E;  4DV4 E;  1UDQ A;  1MG7 A;  2BR2 A;  1Z0C A;  3HJC A;  5K36 C;  4DPW A;  5FLX Q;  2IER A;  1IBM I;  1FJG E;  4KHP I;  1Z5A A;  2Z5B A;  4LF8 I;  2J65 A;  4OO1 D;  4JV5 E;  5BR8 E;  2DEI A;  1H73 A;  3GON A;  3Q1Q A;  2V8P A;  2BR2 B;  2O3Z A;  4B3T E;  1FI4 A;  4MU0 A;  4LF5 E;  2Z5B B;  3H1C A;  4B3S I;  3PS2 A;  4JI5 E;  1DAR A;  4YHH I;  1KIJ A;  1XMO I;  2A2C A;  4FW4 A;  3M85 G;  2PNM A;  3T1H E;  4GKJ I;  2O1T A;  4EMD A;  1B62 A;  1N32 I;  2VF3 A;  1P42 A;  1ZM2 A;  2HKE A;  5LMN E;  4DV1 E;  4JI3 I;  4QNK A;  2BA0 D;  4FW6 A;  3ZZT A;  2PO0 A;  1R6L A;  1NHH A;  3ZKB A;  4USM A;  4JI8 E;  2IES A;  1HNW I;  4GQU A;  4UT4 A;  1HNX E;  3P3E A;  2J7K A;  4HAC A;  4FWH A;  3M7N G;  2BM1 A;  2Z5E A;  2O1U A;  2PO0 B;  2EFG A;  5DRQ A;  4WUC A;  4DPY A;  5JEA F;  4HAC B;  4PU9 A;  1XNR E;  4DR5 E;  1Z0G A;  1Y60 A;  1Z59 A;  4MU1 A;  1XNQ I;  4JI0 E;  2PO2 A;  3U1K A;  5C0X E;  5ELW A;  5C0X A;  4HY1 A;  5K36 F;  1HNZ E;  1S16 A;  4ED4 A;  3T1Y I;  2NN6 A;  5GMD A;  2CG9 A;  4FWG A;  4HYM A;  4DR2 I;  2BA0 G;  2HFU A;  4LF7 E;  2PO2 B;  1PVG A;  5C0X B;  2UU9 I;  1YH8 A;  2NN6 B;  4X62 E;  4K0K I;  4FW3 A;  4FW7 A;  1Z0T A;  5LMU I;  2BM0 A;  2WNR A;  3NZK A;  2R42 A;  4P7A A;  4PRX A;  4DV0 E;  4OO1 A;  4HXZ A;  4OO1 E;  4DU7 A;  1FNM A;  4DV7 E;  3J7A M;  2HHH I;  1XHK A;  4AIM A;  2VQF I;  4JI1 E;  4LCH A;  2HK2 A;  2WNR B;  1N0V C;  4DUZ I;  4LF6 E;  4DR4 E;  4OO1 B;  2PNL A;  1I94 I;  4YY3 E;  2VES A;  2R3V A;  4MYU A;  3ZKD A;  1UEK A;  1IBL I;  4B3S E;  4NBQ A;  2V2Q A;  1N36 E;  1XMO E;  4LF9 E;  4LFC E;  1K47 A;  4OX9 E;  4JI7 I;  3P3G A;  4B3R I;  5JEA C;  3DD6 A;  5IT9 C;  5IWA E;  2UUB E;  1OJ4 A;  5FWK A;  3M6A A;  4X64 E;  4DR6 E;  5A2Q C;  4NXM I;  1XMQ E;  1WUU A;  1FWK A;  3PYE A;  4LFA E;  2UXD E;  3CWV A;  3F0N A;  4IFD F;  1EA6 A;  1J5E E;  2F4V I;  1ZM3 A;  3CDJ A;  4LF4 E;  1PKP A;  5K36 E;  1Z5C A;  4I3H A;  1Y6Z A;  1H74 A;  4NXN E;  4DV3 E;  3LNU A;  5DRR A;  3LTO A;  4JI4 E;  4URL A;  1OYP A;  4AM3 A;  2NPF A;  4JI6 E;  5IT9 Q;  3K17 A;  3P3C A;  1MU5 A;  4DV2 E;  3QT5 A;  1HR0 I;  1Z0W A;  5A2Q Q;  3WU6 A;  4UTG A;  1Y4U A;  1ZM9 A;  4AQY E;  1VI7 A;  4DR7 E;  4DR1 E;  4WUD A;  1ZXN A;  1N33 E;  4DPX A;  4DR3 I;  1UDN A;  3Q6M A;  1H7S A;  3B78 A;  4X66 E;  2C38 A;  2GO3 A;  3PS1 A;  1RRE A;  2Z5C A;  2HKJ A;  5JEA D;  2UUC I;  1YHC A;  4DPU A;  3PS3 A;  3D4J A;  4FW5 A;  1E3H A;  4DV4 I;  1H7U A;  1N34 E;  1RR9 A;  3ZZ0 A;  2C38 B;  2ZM6 I;  5K36 D;  2Z5C B;  2UXB E;  1FJG I;  2UXC E;  4PRV A;  2WP8 A;  1RHY A;  1PIE A;  2E1R A;  4DV6 I;  5BR8 I;  4FWD A;  4IFD C;  3OTO E;  4B3T I;  2OI2 A;  4LF5 I;  5DNL A;  2WP8 B;  1ZM4 A;  4OKG A;  4MDT A;  4JI5 I;  1FWL A;  4OZE A;  3WU4 A;  4U3B A;  2JE6 A;  4JYA E;  5DRO A;  4GKK E;  3GME A;  2NN6 C;  3QT6 A;  3T1H I;  4B3M I;  1IBK E;  2XEX A;  3LPS A;  3WU5 A;  2JE6 B;  5LMN I;  3ZZU A;  1ELO A;  4WUB A;  4DV1 I;  4FW9 A;  4MQY A;  4ISA A;  4LCF A;  2CVE A;  1IBM E;  5GME A;  4KHP E;  5EKW A;  4JI8 I;  4LF8 E;  4LFB I;  1MX0 A;  1HNX I;  4DU8 A;  5DNX A;  4ZVI A;  4DUY I;  1Z0B A;  4M1K A;  4Z7Y A;  2V2V A;  1NZ0 A;  4DV5 I;  4X65 I;  3PYG A;  2DEJ A;  3PRY A;  4YHH E;  4P52 A;  2ZIT A;  3J7A G;  1XNR I;  1E3P A;  4MU3 A;  4GKJ E;  2JEB A;  1HK7 A;  4BA2 A;  2X36 A;  4JI0 I;  1N32 E;  3CDI A;  4IFD D;  4KQV A;  1HNZ I;  2AJ4 A;  1FKA E;  4JI3 E;  5JEA E;  5JEA A;  1EI1 A;  2JEB B;  2V34 A;  4BA2 B;  4BA1 A;  3P06 A;  2V2Z A;  1HNW E;  4X62 I;  1Z0V A;  3M85 D;  1KKH A;  5LL6 R;  5K36 A;  4U3D A;  5JEA B;  4JG4 A;  4XTJ A;  4BA1 B;  4DV0 I;  5C0X F;  3J81 C;  4IZJ D;  4DV7 I;  2NN6 F;  1Z5B A;  1U2R A;  2ZM6 E;  5K36 B;  4JI1 I;  4AID A;  2BV3 A;  2GS8 A;  3U1Y A;  2IOP A;  2GQ0 A;  4LF6 I;  4DR4 I;  3K85 A;  5L3J A;  4DV6 E;  2JEA A;  4YY3 I;  3JAM C;  1XNQ E;  2Q2E B;  3P76 A;  3T1Y E;  3M7N D;  4IS9 A;  4LOM A;  4OO1 F;  4DR2 E;  1Y4S A;  3GCM A;  3H4L A;  5DRP A;  2JEA B;  2HFS A;  2E5L I;  4JI2 I;  3K1J A;  4J3D A;  1N36 I;  2UU9 E;  4LF9 I;  4LFC I;  4OX9 I;  3PYD A;  4LCG A;  4K0K E;  4DXL A;  1NHI A;  4B3M E;  1UDS A;  4LPF A;  3V2U C;  5IWA I;  3J81 Q;  2VQE I;  5LMU E;  2UUB I;  2UUA I;  4QNJ A;  1Y5Y A;  4X64 I;  4DR6 I;  2HHH E;  1XMQ I;  2VQF E;  3B4T A;  4LFA I;  3JAM Q;  2UXD I;  1N0U A;  2X7I A;  1J5E I;  3WU3 A;  2C39 A;  4LFB E;  4JV5 I;  4DUZ E;  1QZR A;  3UHM A;  1I94 E;  2BA1 D;  4LF4 I;  2PO1 A;  1ZXM A;  2C37 A;  2F1D A;  4NXN I;  4DV3 I;  1H72 C;  4DUY E;  2C39 B;  4JI4 I;  2ZBK B;  4DV5 E;  1IBL E;  2PNZ A;  4IFD E;  4X65 E;  4IFD A;  2PO1 B;  3KRN A;  5C0X C;  4JI6 I;  2C37 B;  3B8H A;  1R6M A;  3QT7 A;  2WW4 A;  1USV A;  4MYT A;  4JI7 E;  4DV2 I;  4B3R E;  1OYS A;  2PNZ B;  4IFD B;  4FN5 A;  3PYF A;  1OYR A;  4AQY I;  1VIS A;  2NN6 E;  4MU4 A;  4DR7 I;  4NXM E;  4DR1 I;  1KVK A;  5EL9 A;  1Z0E A;  3GLL A;  1N33 I;  4OO1 C;  2CGE A;  2LJP A;  2HK3 A;  4IZJ A;  1S4E A;  2F4V E;  2BA1 G;  4X66 I;  3J80 C;  1D6T A;  1A6F A;  4USK A;  3Q6N A;  4IZJ B;  1N34 I;  2GO4 A;  1B63 A;  4N3O A;  4Z7C A;  3HUL A;  1USU A;  3HKM A;  1NHJ A;  2UXB I;  4DPT A;  2UXC I; 
#chains in the Genus database with same CATH homology
 4MU4 A;  1RHY A;  5DNX A;  4LPF A;  2AE8 A;  4MU0 A;  4MU1 A;  4LOM A;  2F1D A;  5DNL A;  5EKW A;  5ELW A;  5EL9 A;  4QNK A;  4QNJ A;  4MU3 A;  4GQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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