5DNLA

Crystal structure of igpd from pyrococcus furiosus in complex with (s)-c348
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
176
structure length
176
Chain Sequence
MRRTTKETDIIVEIGKKGEIKTNDLILDHMLTAFAFYLGKDMRITATYDLRHHLWEDIGITLGEALRENLPEKFTRFGNAIMPMDDALVLVSVDISNRPYANVDVNIKDAEEGFAVSLLKEFVWGLARGLRATIHIKQLSGENAHHIVEAAFKGLGMALRVATKESERVESTKGVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Lyase
total genus 58
structure length 176
sequence length 176
chains with identical sequence B, C
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnlA02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnlA01
4LPFA 4LOMA 5EKWA 1RHYA 4QNJA 4QNKA 2AE8A 5EL9A 5ELWA 4MU3A 2F1DA 4GQUA 4MU1A 5DNLA 5DNXA 4MU0A 4MU4A
chains in the Genus database with same CATH superfamily
4DU8A 4HYMA 5A2QQ 1ELOA 1U2RA 3QT6A 4YHHI 4P7AA 2CGEA 2VESA 3ZM7A 4JI1I 4DR5I 4JI4I 3J80Q 5DNLA 4JI1E 4JI4E 2A2CA 4I3HA 5DRQA 2NN6C 4JI6E 4B3MI 4IFDA 1Z0GA 1J5EI 3K17A 5LMUI 1ZM3A 4LCHA 4B3ME 4DPXA 1J5EE 5LMUE 3GLLA 4P52A 1N0VC 1IBKI 1H74A 2WW4A 1K47A 2BA0D 4MU3A 2Z5BA 1Y60A 2UXDI 4JI7I 1IBKE 2PO1A 1NZ0A 4IS9A 4JI3I 2ZM6E 2HKJA 2UXDE 4JI7E 1Z5BA 3HJCA 2GO4A 5JEAC 3U1YA 4JI3E 2V34A 2BV3A 4IFDD 3J7AG 1EI1A 2Z5CA 4LFAE 3JAMC 5K36A 1Z5CA 4KHPE 4GKKI 5FLXC 4FWDA 3QT5A 1D6TA 3V2UC 2PNZA 4GKKE 4AM3A 4OO1B 2J65A 1N34I 4MYUA 5LL6R 3K85A 4K0KI 2BM1A 5C0XF 1N34E 2UXCI 2J7KA 2UUAE 3Q1QA 1E3HA 3Q6NA 4JI0I 4DV1I 4K0KE 1ZM4A 4B3SI 2UXCE 5K36D 5JEAB 1Z0WA 1USVA 4DV1E 4JI0E 5C0XE 1NHJA 4B3SE 3H4LA 1ZM9A 4X64I 1WUUA 1Z5AA 4LCGA 4Z7YA 1Z0CA 4X64E 2AE8A 1B62A 4OZEA 2UXBI 1RR9A 4LOMA 2UXBE 4KQVA 4B3TI 3Q6MA 3PS3A 1PIEA 4B3TE 2VF3A 4LFBI 1OYRA 2JEBB 4LCFA 4DV3E 3M85G 1HR0E 2WNRB 5FLXQ 4LFBE 4LF5I 4DR6E 1RREA 1XHKA 4Z7CA 5DNXA 2PO2B 4ED4A 4DV4I 4LF5E 4FWGA 4M1KA 1I94I 1XNQI 2NN6A 4YY3I 3QT8A 5DROA 4DV4E 2WP8B 1R6MA 4XTJA 1HNXI 3OTOI 1EA6A 4DU7A 1XNQE 4ISAA 2X36A 4X62I 1UDSA 4LF7I 1HNXE 3OTOE 4BA2A 4DPWA 4AQYI 1N33I 4X62E 4LF7E 4LPFA 1N33E 4DPYA 1Y5YA 4LF6I 5JEAA 2PO0B 4YHHE 2NN6D 4FW9A 2A2DA 4JV5I 4QNKA 4WUDA 4IFDF 1VI7A 5DRPA 4JI5I 2O3ZA 4OX9I 4GKJI 4DR5E 4JV5E 4FW7A 1B63A 3L7ZB 3WU4A 4JI5E 1R6LA 2OI2A 4OX9E 4GKJE 2HHHI 4IFDE 2JEAB 2JE6A 3HULA 3M7NG 4OO1C 2HHHE 2BA1D 3ZKBA 2R3VA 1MX0A 4LF9I 2HFUA 4MDTA 2CG9A 4FWHA 3B8HA 4X66I 2F1DA 4FW4A 5JEAD 1FKAE 4LF9E 1XMQI 3GONA 2C38A 4X66E 1KKHA 2Z5EA 1XMQE 1NHIA 3J7AM 4IZKB 1HNWI 1FWLA 4HACA 4DXLA 2GO3A 2WP8A 1HNWE 4DPTA 5K36F 4DR3I 2ZITA 4X65I 2GS8A 1Z59A 2BR2A 4FW6A 2BA0G 1ZM2A 4X65E 1Y4SA 5K36E 4DV7I 1FI4A 3B82A 1H7SA 5L3JA 4RPFA 4DV7E 3T1HI 1N32I 1H72C 2BM0A 1QZRA 3D4JA 3T1HE 4DV6I 2PO0A 2F4VI 1VISA 3P76A 2DEJA 3GMEA 3P3EA 2VQEI 1Y6ZA 2V2VA 3L7ZA 1FJGI 2VQEE 4GQUA 1XMOI 4LF4I 1ZXMA 2JEAA 4FW3A 1NHHA 1FJGE 4N3OA 1XMOE 4LF4E 1FNMA 2V8PA 3M6AA 5BR8I 5FWKA 2Q2EB 3P3GA 3J81C 3ZZTA 1UDQA 1UEKA 3PRYA 1KVKA 2O1TA 4JG4A 1Z0TA 2DEIA 1YHCA 5GMDA 1PVGA 3PS2A 3PS1A 3U1KA 2HKEA 2NN6F 4DV0I 2C39B 4HXZA 1HNZI 4DV0E 2NN6E 1MG7A 3UHMA 1S16A 2V2QA 1IBMI 3B78A 1Z0VA 1I94E 1HNZE 4YY3E 4OO1A 4DV2I 1IBME 4J3DA 1KIJA 4DV2E 2XEXA 5JEAF 4DR4I 4AQYE 4DPUA 4PRXA 2O1WA 1IBLI 2E5LI 4DR4E 3P3CA 4MU0A 2UUBI 4NXMI 4FN5A 5JEAE 3J81Q 5IWAI 4BA1B 5ELWA 2UUBE 3K1JA 2E1RA 4LF6E 3B4TA 5IWAE 5EKWA 4OO1D 2IOQA 4JI8I 2HK3A 1XXEA 1UDNA 2IOPA 4U3BA 1UDOA 2PNZB 4JI8E 5LMNI 3M7ND 4JYAI 5GMEA 2UU9I 2C37B 4OKGA 1E3PA 5LMNE 4JYAE 3T1YI 2UU9E 3DD6A 3KRNA 2JEBA 2WNRA 4JI6I 3T1YE 2AJ4A 3P06A 1USUA 2PNLA 1YH8A 5IT9C 2PO2A 2C39A 2O1UA 3PYDA 5C0XB 1HK7A 1Y4UA 2BA1G 1Z0BA 4DUZI 3ZZUA 4LFCI 4DR3E 4DUZE 1P42A 4LFCE 4EMDA 2ZM6I 3CDIA 3LTOA 3LNUA 4ZVIA 1Z0EA 4IZJB 4AIMA 1DARA 1H7UA 2HFSA 1A6FA 4UT4A 2CZ9A 1N32E 4LFAI 1RHYA 4NXNI 4BA1A 3WU3A 4MU1A 4B3RI 4HY1A 3PYGA 1OYPA 4DV6E 4KHPI 2ZBKB 4NXNE 2IESA 3CDJA 2F4VE 4USKA 4B3RE 5EL9A 1N36I 4IFDC 4DR2I 4JI2I 2EFGA 2NN6B 1N36E 4DR2E 4QNJA 4JI2E 4PRVA 4DR7I 3LPSA 2V2ZA 2C37A 4AIDA 3ZKDA 1ZXNA 4MQYA 4DR7E 4BA2B 5BR8E 2LJPA 2X7IA 3PYFA 1PKPA 2NPFA 4URLA 2UUAI 4USMA 5IT9Q 1H73A 1XNRI 5DRRA 4MYTA 4IZKA 1XNRE 1S4EA 5A2QC 4DUYI 4U3DA 5C0XA 3V5RA 4WUBA 3H1CA 3HKMA 3QT7A 1KTVA 4WUCA 4DUYE 2PNMA 3M85D 3F0NA 5K36C 3WU6A 2VQFI 4DR1I 4OO1F 4IFDB 3J80C 4IZJA 2JE6B 2VQFE 4DV5I 4DR1E 3PYEA 4MU4A 4PU9A 2GQ0A 4DV5E 1BKNA 4R1FA 4UTGA 4DV3I 1MU5A 4OO1E 3WU5A 1HR0I 3JAMQ 2HK2A 4DR6I 3CWVA 4FW5A 1FWKA 2Z5BB 1N0UA 5C0XD 2IERA 1OJ4A 2PO1B 2O1VA 2C38B 2R42A 2JT2A 3GCMA 3NZKA 2CVEA 4HACB 5C0XC 4LF8I 2UUCI 3ZZ0A 2E5LE 4IZJD 1IBLE 4LF8E 2UUCE 4NBQA 2Z5CB 4NXME 2BR2B 5K36B 1OYSA
chains in the Genus database with same CATH topology
4LPFA 4LOMA 5EKWA 1RHYA 4QNJA 4QNKA 2AE8A 5EL9A 5ELWA 4MU3A 2F1DA 4GQUA 4MU1A 5DNLA 5DNXA 4MU0A 4MU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LPF A;  4LOM A;  5EKW A;  1RHY A;  4QNJ A;  4QNK A;  2AE8 A;  5EL9 A;  5ELW A;  4MU3 A;  2F1D A;  4GQU A;  4MU1 A;  5DNL A;  5DNX A;  4MU0 A;  4MU4 A; 
#chains in the Genus database with same CATH topology
 4DU8 A;  4HYM A;  5A2Q Q;  1ELO A;  1U2R A;  3QT6 A;  4YHH I;  4P7A A;  2CGE A;  2VES A;  3ZM7 A;  4JI1 I;  4DR5 I;  4JI4 I;  3J80 Q;  5DNL A;  4JI1 E;  4JI4 E;  2A2C A;  4I3H A;  5DRQ A;  2NN6 C;  4JI6 E;  4B3M I;  4IFD A;  1Z0G A;  1J5E I;  3K17 A;  5LMU I;  1ZM3 A;  4LCH A;  4B3M E;  4DPX A;  1J5E E;  5LMU E;  3GLL A;  4P52 A;  1N0V C;  1IBK I;  1H74 A;  2WW4 A;  1K47 A;  2BA0 D;  4MU3 A;  2Z5B A;  1Y60 A;  2UXD I;  4JI7 I;  1IBK E;  2PO1 A;  1NZ0 A;  4IS9 A;  4JI3 I;  2ZM6 E;  2HKJ A;  2UXD E;  4JI7 E;  1Z5B A;  3HJC A;  2GO4 A;  5JEA C;  3U1Y A;  4JI3 E;  2V34 A;  2BV3 A;  4IFD D;  3J7A G;  1EI1 A;  2Z5C A;  4LFA E;  3JAM C;  5K36 A;  1Z5C A;  4KHP E;  4GKK I;  5FLX C;  4FWD A;  3QT5 A;  1D6T A;  3V2U C;  2PNZ A;  4GKK E;  4AM3 A;  4OO1 B;  2J65 A;  1N34 I;  4MYU A;  5LL6 R;  3K85 A;  4K0K I;  2BM1 A;  5C0X F;  1N34 E;  2UXC I;  2J7K A;  2UUA E;  3Q1Q A;  1E3H A;  3Q6N A;  4JI0 I;  4DV1 I;  4K0K E;  1ZM4 A;  4B3S I;  2UXC E;  5K36 D;  5JEA B;  1Z0W A;  1USV A;  4DV1 E;  4JI0 E;  5C0X E;  1NHJ A;  4B3S E;  3H4L A;  1ZM9 A;  4X64 I;  1WUU A;  1Z5A A;  4LCG A;  4Z7Y A;  1Z0C A;  4X64 E;  2AE8 A;  1B62 A;  4OZE A;  2UXB I;  1RR9 A;  4LOM A;  2UXB E;  4KQV A;  4B3T I;  3Q6M A;  3PS3 A;  1PIE A;  4B3T E;  2VF3 A;  4LFB I;  1OYR A;  2JEB B;  4LCF A;  4DV3 E;  3M85 G;  1HR0 E;  2WNR B;  5FLX Q;  4LFB E;  4LF5 I;  4DR6 E;  1RRE A;  1XHK A;  4Z7C A;  5DNX A;  2PO2 B;  4ED4 A;  4DV4 I;  4LF5 E;  4FWG A;  4M1K A;  1I94 I;  1XNQ I;  2NN6 A;  4YY3 I;  3QT8 A;  5DRO A;  4DV4 E;  2WP8 B;  1R6M A;  4XTJ A;  1HNX I;  3OTO I;  1EA6 A;  4DU7 A;  1XNQ E;  4ISA A;  2X36 A;  4X62 I;  1UDS A;  4LF7 I;  1HNX E;  3OTO E;  4BA2 A;  4DPW A;  4AQY I;  1N33 I;  4X62 E;  4LF7 E;  4LPF A;  1N33 E;  4DPY A;  1Y5Y A;  4LF6 I;  5JEA A;  2PO0 B;  4YHH E;  2NN6 D;  4FW9 A;  2A2D A;  4JV5 I;  4QNK A;  4WUD A;  4IFD F;  1VI7 A;  5DRP A;  4JI5 I;  2O3Z A;  4OX9 I;  4GKJ I;  4DR5 E;  4JV5 E;  4FW7 A;  1B63 A;  3L7Z B;  3WU4 A;  4JI5 E;  1R6L A;  2OI2 A;  4OX9 E;  4GKJ E;  2HHH I;  4IFD E;  2JEA B;  2JE6 A;  3HUL A;  3M7N G;  4OO1 C;  2HHH E;  2BA1 D;  3ZKB A;  2R3V A;  1MX0 A;  4LF9 I;  2HFU A;  4MDT A;  2CG9 A;  4FWH A;  3B8H A;  4X66 I;  2F1D A;  4FW4 A;  5JEA D;  1FKA E;  4LF9 E;  1XMQ I;  3GON A;  2C38 A;  4X66 E;  1KKH A;  2Z5E A;  1XMQ E;  1NHI A;  3J7A M;  4IZK B;  1HNW I;  1FWL A;  4HAC A;  4DXL A;  2GO3 A;  2WP8 A;  1HNW E;  4DPT A;  5K36 F;  4DR3 I;  2ZIT A;  4X65 I;  2GS8 A;  1Z59 A;  2BR2 A;  4FW6 A;  2BA0 G;  1ZM2 A;  4X65 E;  1Y4S A;  5K36 E;  4DV7 I;  1FI4 A;  3B82 A;  1H7S A;  5L3J A;  4RPF A;  4DV7 E;  3T1H I;  1N32 I;  1H72 C;  2BM0 A;  1QZR A;  3D4J A;  3T1H E;  4DV6 I;  2PO0 A;  2F4V I;  1VIS A;  3P76 A;  2DEJ A;  3GME A;  3P3E A;  2VQE I;  1Y6Z A;  2V2V A;  3L7Z A;  1FJG I;  2VQE E;  4GQU A;  1XMO I;  4LF4 I;  1ZXM A;  2JEA A;  4FW3 A;  1NHH A;  1FJG E;  4N3O A;  1XMO E;  4LF4 E;  1FNM A;  2V8P A;  3M6A A;  5BR8 I;  5FWK A;  2Q2E B;  3P3G A;  3J81 C;  3ZZT A;  1UDQ A;  1UEK A;  3PRY A;  1KVK A;  2O1T A;  4JG4 A;  1Z0T A;  2DEI A;  1YHC A;  5GMD A;  1PVG A;  3PS2 A;  3PS1 A;  3U1K A;  2HKE A;  2NN6 F;  4DV0 I;  2C39 B;  4HXZ A;  1HNZ I;  4DV0 E;  2NN6 E;  1MG7 A;  3UHM A;  1S16 A;  2V2Q A;  1IBM I;  3B78 A;  1Z0V A;  1I94 E;  1HNZ E;  4YY3 E;  4OO1 A;  4DV2 I;  1IBM E;  4J3D A;  1KIJ A;  4DV2 E;  2XEX A;  5JEA F;  4DR4 I;  4AQY E;  4DPU A;  4PRX A;  2O1W A;  1IBL I;  2E5L I;  4DR4 E;  3P3C A;  4MU0 A;  2UUB I;  4NXM I;  4FN5 A;  5JEA E;  3J81 Q;  5IWA I;  4BA1 B;  5ELW A;  2UUB E;  3K1J A;  2E1R A;  4LF6 E;  3B4T A;  5IWA E;  5EKW A;  4OO1 D;  2IOQ A;  4JI8 I;  2HK3 A;  1XXE A;  1UDN A;  2IOP A;  4U3B A;  1UDO A;  2PNZ B;  4JI8 E;  5LMN I;  3M7N D;  4JYA I;  5GME A;  2UU9 I;  2C37 B;  4OKG A;  1E3P A;  5LMN E;  4JYA E;  3T1Y I;  2UU9 E;  3DD6 A;  3KRN A;  2JEB A;  2WNR A;  4JI6 I;  3T1Y E;  2AJ4 A;  3P06 A;  1USU A;  2PNL A;  1YH8 A;  5IT9 C;  2PO2 A;  2C39 A;  2O1U A;  3PYD A;  5C0X B;  1HK7 A;  1Y4U A;  2BA1 G;  1Z0B A;  4DUZ I;  3ZZU A;  4LFC I;  4DR3 E;  4DUZ E;  1P42 A;  4LFC E;  4EMD A;  2ZM6 I;  3CDI A;  3LTO A;  3LNU A;  4ZVI A;  1Z0E A;  4IZJ B;  4AIM A;  1DAR A;  1H7U A;  2HFS A;  1A6F A;  4UT4 A;  2CZ9 A;  1N32 E;  4LFA I;  1RHY A;  4NXN I;  4BA1 A;  3WU3 A;  4MU1 A;  4B3R I;  4HY1 A;  3PYG A;  1OYP A;  4DV6 E;  4KHP I;  2ZBK B;  4NXN E;  2IES A;  3CDJ A;  2F4V E;  4USK A;  4B3R E;  5EL9 A;  1N36 I;  4IFD C;  4DR2 I;  4JI2 I;  2EFG A;  2NN6 B;  1N36 E;  4DR2 E;  4QNJ A;  4JI2 E;  4PRV A;  4DR7 I;  3LPS A;  2V2Z A;  2C37 A;  4AID A;  3ZKD A;  1ZXN A;  4MQY A;  4DR7 E;  4BA2 B;  5BR8 E;  2LJP A;  2X7I A;  3PYF A;  1PKP A;  2NPF A;  4URL A;  2UUA I;  4USM A;  5IT9 Q;  1H73 A;  1XNR I;  5DRR A;  4MYT A;  4IZK A;  1XNR E;  1S4E A;  5A2Q C;  4DUY I;  4U3D A;  5C0X A;  3V5R A;  4WUB A;  3H1C A;  3HKM A;  3QT7 A;  1KTV A;  4WUC A;  4DUY E;  2PNM A;  3M85 D;  3F0N A;  5K36 C;  3WU6 A;  2VQF I;  4DR1 I;  4OO1 F;  4IFD B;  3J80 C;  4IZJ A;  2JE6 B;  2VQF E;  4DV5 I;  4DR1 E;  3PYE A;  4MU4 A;  4PU9 A;  2GQ0 A;  4DV5 E;  1BKN A;  4R1F A;  4UTG A;  4DV3 I;  1MU5 A;  4OO1 E;  3WU5 A;  1HR0 I;  3JAM Q;  2HK2 A;  4DR6 I;  3CWV A;  4FW5 A;  1FWK A;  2Z5B B;  1N0U A;  5C0X D;  2IER A;  1OJ4 A;  2PO1 B;  2O1V A;  2C38 B;  2R42 A;  2JT2 A;  3GCM A;  3NZK A;  2CVE A;  4HAC B;  5C0X C;  4LF8 I;  2UUC I;  3ZZ0 A;  2E5L E;  4IZJ D;  1IBL E;  4LF8 E;  2UUC E;  4NBQ A;  2Z5C B;  4NXM E;  2BR2 B;  5K36 B;  1OYS A; 
#chains in the Genus database with same CATH homology
 4LPF A;  4LOM A;  5EKW A;  1RHY A;  4QNJ A;  4QNK A;  2AE8 A;  5EL9 A;  5ELW A;  4MU3 A;  2F1D A;  4GQU A;  4MU1 A;  5DNL A;  5DNX A;  4MU0 A;  4MU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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