5DNLA

Crystal structure of igpd from pyrococcus furiosus in complex with (s)-c348
Total Genus 58
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
176
structure length
176
Chain Sequence
MRRTTKETDIIVEIGKKGEIKTNDLILDHMLTAFAFYLGKDMRITATYDLRHHLWEDIGITLGEALRENLPEKFTRFGNAIMPMDDALVLVSVDISNRPYANVDVNIKDAEEGFAVSLLKEFVWGLARGLRATIHIKQLSGENAHHIVEAAFKGLGMALRVATKESERVESTKGVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 58
structure length 176
sequence length 176
chains with identical sequence B, C
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnlA02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnlA01
5EL9A 5DNLA 5ELWA 4MU3A 1RHYA 2F1DA 4MU4A 4GQUA 4MU1A 4LPFA 5DNXA 2AE8A 4MU0A 4QNKA 4LOMA 5EKWA 4QNJA
chains in the Genus database with same CATH superfamily
4WUBA 2EFGA 1KKHA 5EKWA 4X64E 1H73A 4LF8E 1HK7A 2UUAI 5LMNE 4BA2A 5A2QC 4JV5I 3CWVA 4QNKA 4USMA 5IWAE 4UT4A 3B82A 1PIEA 3GMEA 2BR2B 1MX0A 4MU0A 4DR3E 4AIMA 4DV1I 2X36A 3LNUA 4PRXA 4DR7E 4N3OA 1Y60A 2R42A 2IESA 4OO1A 2HK3A 1YH8A 4LF7E 1D6TA 2C37B 2BM0A 3U1YA 1PVGA 4X64I 5C0XA 4LF8I 4MU1A 5LMNI 4FW6A 4OO1F 4JI6E 4JI0E 5IWAI 2O1UA 2HFSA 2NN6A 3K17A 2GO4A 1HR0E 5DNLA 5ELWA 5C0XF 4K0KE 4DR7I 3J81C 2VQEE 4OO1D 2O1WA 4LF7I 2CVEA 1Z0VA 3Q1QA 2WP8A 1Y5YA 1FI4A 1MG7A 2NN6F 4M1KA 1MU5A 2NPFA 4JI8E 1I94E 2E5LE 3J7AM 3PYFA 2UU9E 4PRVA 4IFDB 4LF4I 3LPSA 4B3TE 4J3DA 5IT9C 1FWLA 4JI6I 1H74A 4OKGA 1J5EI 1OYSA 2PNLA 2NN6D 2DEJA 4JI3E 4MU4A 4JI7E 1NHJA 4HY1A 4K0KI 2JT2A 4WUCA 5C0XB 4AM3A 4MQYA 2VQEI 1N33I 1Z0TA 4NXNE 1XMQE 2C39B 4RPFA 2PO0B 1USUA 4JI8I 1I94I 2E5LI 2Z5BA 2UU9I 4B3TI 5A2QQ 4DV2E 4NXME 4MYTA 1N34E 3L7ZA 2C38A 1OJ4A 3T1HE 4JI3I 3ZZUA 3QT7A 5K36B 2J65A 3D4JA 3B8HA 3UHMA 1FJGE 4IFDC 1XXEA 4LCFA 1DARA 2Z5CB 3ZKBA 4U3BA 1Y6ZA 2BM1A 4NXNI 4I3HA 3K1JA 1Z5CA 4X65E 4P52A 3PS3A 1Z0EA 3OTOE 2AJ4A 4R1FA 4KHPI 3U1KA 5C0XC 4DV2I 4NXMI 3PYGA 1HNZE 1XNQI 1N34I 2A2DA 2R3VA 1Y4SA 3T1HI 2GS8A 2PO1A 2PNMA 3T1YE 4AIDA 4GKKE 1ZM3A 3J80C 1FJGI 4LFAE 3J81Q 2F4VE 3JAMC 3P76A 4JG4A 3M6AA 2JEBB 1E3HA 2O1TA 2PO2A 2BA0G 2JEAA 5JEAB 1OYRA 3NZKA 5K36C 3HKMA 3PS1A 3ZKDA 5DRQA 4HACA 4X66E 1IBME 3QT6A 4DR2E 5IT9Q 2HFUA 3QT5A 3GCMA 4LOMA 4IFDE 4YY3E 3B4TA 1NHIA 5DROA 3Q6MA 4GKKI 1Z0GA 4LFAI 4HXZA 2A2CA 2F1DA 2JE6A 5DRPA 4AQYE 4FW9A 4URLA 4FWDA 5C0XE 2PO1B 2HHHE 3Q6NA 4FN5A 3P3CA 2CZ9A 1ELOA 3CDIA 4LFCE 1VISA 2O3ZA 4DR3I 4X66I 1IBMI 4DR2I 2XEXA 4BA2B 5DNXA 2UXDE 5GMDA 2GQ0A 2V34A 4FW7A 4YY3I 2UUBE 2CGEA 1E3PA 5JEAC 3K85A 4DR4E 4USKA 2V2QA 1EI1A 1ZXMA 4YHHE 5FLXQ 4FW3A 5K36E 4DUYE 4FWGA 4OO1B 4JI0I 2V2VA 3HJCA 1XHKA 1HNXE 3WU5A 1R6MA 3J7AG 2UXBE 4GQUA 4LFCI 1KVKA 1HR0I 3PYEA 4PU9A 1NHHA 5DRRA 1ZM2A 2UUBI 4LF9E 1H7UA 4KQVA 4DR4I 2WNRA 4DV6E 4IZJA 4DR1E 2NN6B 3JAMQ 4B3RE 3ZZ0A 2J7KA 2Q2EB 2IERA 4OZEA 5FWKA 1QZRA 4DUYI 3GLLA 1UEKA 3GONA 3M7ND 1H72C 2WP8B 1HNXI 4JYAE 1Z59A 2BA0D 2BV3A 1N36E 2LJPA 4JI7I 4DPTA 2IOPA 1VI7A 5JEAE 2HKEA 3CDJA 4OO1C 5LMUE 4IZJD 4LCGA 1XMQI 4DU8A 4DV6I 4DPYA 4DV7E 1ZXNA 4LF6E 1WUUA 2VQFE 1BKNA 4B3RI 4MYUA 1A6FA 4DV3E 3H1CA 1XMOE 4B3SE 1B62A 1S16A 2BA1G 2IOQA 4LFBE 3V2UC 4JYAI 1N36I 1RREA 4HYMA 2NN6C 2Z5BB 4JV5E 3H4LA 3M85D 1H7SA 2C37A 5L3JA 1N32E 3M7NG 1HNWE 3L7ZB 3WU6A 1XNRE 4QNJA 4JI5E 3HULA 4FW5A 4X65I 2C38B 4DV7I 4LF6I 1Z5AA 2DEIA 2VQFI 1N0VC 1FNMA 4Z7YA 5LL6R 3OTOI 2UUCE 4DV3I 4LF5E 2HK2A 1HNZI 1XMOI 1EA6A 5EL9A 4U3DA 1UDQA 1Z0CA 2Z5EA 2PNZA 4LFBI 4JI1E 4LPFA 3T1YI 4OO1E 4DU7A 2ZM6E 2F4VI 3PRYA 1N32I 1HNWI 1XNRI 3PYDA 1KIJA 4JI5I 4IFDA 4P7AA 4X62E 2UUCI 3M85G 4LF5I 3ZM7A 4DV0E 4EMDA 3WU3A 2VESA 2NN6E 5BR8E 4IFDF 2PO2B 2JEAB 4JI1I 4LF4E 3DD6A 3ZZTA 2ZM6I 2V2ZA 1K47A 4HACB 2C39A 1J5EE 4DR6E 2PO0A 4WUDA 4AQYI 4IFDD 4DR5E 2PNZB 2X7IA 1FKAE 4B3SI 3PS2A 4ZVIA 2HHHI 1Y4UA 4X62I 4IS9A 1N33E 1U2RA 1Z5BA 3V5RA 4DV0I 2OI2A 2JE6B 4B3ME 4DPUA 2UXDI 2ZBKB 5BR8I 3KRNA 1S4EA 4DV5E 5K36A 5C0XD 2CG9A 2BA1D 2UXCE 1PKPA 1UDNA 2Z5CA 3J80Q 3WU4A 1FWKA 4JI2E 4GKJE 4FW4A 2ZITA 4DR6I 1N0UA 4UTGA 3P3EA 4YHHI 4JI4E 4DUZE 5K36F 4DR5I 1P42A 1KTVA 4Z7CA 1Z0BA 2UXBI 4LCHA 2VF3A 4MU3A 4IZKA 4XTJA 1ZM9A 3P06A 4B3MI 5GMEA 5K36D 4DV4E 4BA1A 4DV5I 4LF9I 3B78A 2UXCI 4KHPE 4JI2I 2WW4A 4OX9E 1YHCA 4DR1I 4GKJI 1RHYA 3F0NA 1XNQE 2JEBA 4DXLA 1R6LA 1IBKE 3QT8A 5JEAA 2GO3A 4JI4I 4DUZI 1IBLE 1NZ0A 1USVA 1UDSA 2BR2A 2WNRB 4IZJB 4MDTA 4ED4A 2UUAE 2O1VA 1ZM4A 5FLXC 5JEAF 2V8PA 4DV4I 1OYPA 5LMUI 3P3GA 1B63A 2E1RA 4OX9I 3LTOA 4DPWA 4DV1E 1RR9A 2HKJA 4FWHA 4NBQA 4IZKB 5JEAD 1IBKI 1UDOA 2AE8A 1IBLI 4DPXA 1Z0WA 4ISAA 4BA1B
chains in the Genus database with same CATH topology
5EL9A 5DNLA 5ELWA 4MU3A 1RHYA 2F1DA 4MU4A 4GQUA 4MU1A 4LPFA 5DNXA 2AE8A 4MU0A 4QNKA 4LOMA 5EKWA 4QNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EL9 A;  5DNL A;  5ELW A;  4MU3 A;  1RHY A;  2F1D A;  4MU4 A;  4GQU A;  4MU1 A;  4LPF A;  5DNX A;  2AE8 A;  4MU0 A;  4QNK A;  4LOM A;  5EKW A;  4QNJ A; 
#chains in the Genus database with same CATH topology
 4WUB A;  2EFG A;  1KKH A;  5EKW A;  4X64 E;  1H73 A;  4LF8 E;  1HK7 A;  2UUA I;  5LMN E;  4BA2 A;  5A2Q C;  4JV5 I;  3CWV A;  4QNK A;  4USM A;  5IWA E;  4UT4 A;  3B82 A;  1PIE A;  3GME A;  2BR2 B;  1MX0 A;  4MU0 A;  4DR3 E;  4AIM A;  4DV1 I;  2X36 A;  3LNU A;  4PRX A;  4DR7 E;  4N3O A;  1Y60 A;  2R42 A;  2IES A;  4OO1 A;  2HK3 A;  1YH8 A;  4LF7 E;  1D6T A;  2C37 B;  2BM0 A;  3U1Y A;  1PVG A;  4X64 I;  5C0X A;  4LF8 I;  4MU1 A;  5LMN I;  4FW6 A;  4OO1 F;  4JI6 E;  4JI0 E;  5IWA I;  2O1U A;  2HFS A;  2NN6 A;  3K17 A;  2GO4 A;  1HR0 E;  5DNL A;  5ELW A;  5C0X F;  4K0K E;  4DR7 I;  3J81 C;  2VQE E;  4OO1 D;  2O1W A;  4LF7 I;  2CVE A;  1Z0V A;  3Q1Q A;  2WP8 A;  1Y5Y A;  1FI4 A;  1MG7 A;  2NN6 F;  4M1K A;  1MU5 A;  2NPF A;  4JI8 E;  1I94 E;  2E5L E;  3J7A M;  3PYF A;  2UU9 E;  4PRV A;  4IFD B;  4LF4 I;  3LPS A;  4B3T E;  4J3D A;  5IT9 C;  1FWL A;  4JI6 I;  1H74 A;  4OKG A;  1J5E I;  1OYS A;  2PNL A;  2NN6 D;  2DEJ A;  4JI3 E;  4MU4 A;  4JI7 E;  1NHJ A;  4HY1 A;  4K0K I;  2JT2 A;  4WUC A;  5C0X B;  4AM3 A;  4MQY A;  2VQE I;  1N33 I;  1Z0T A;  4NXN E;  1XMQ E;  2C39 B;  4RPF A;  2PO0 B;  1USU A;  4JI8 I;  1I94 I;  2E5L I;  2Z5B A;  2UU9 I;  4B3T I;  5A2Q Q;  4DV2 E;  4NXM E;  4MYT A;  1N34 E;  3L7Z A;  2C38 A;  1OJ4 A;  3T1H E;  4JI3 I;  3ZZU A;  3QT7 A;  5K36 B;  2J65 A;  3D4J A;  3B8H A;  3UHM A;  1FJG E;  4IFD C;  1XXE A;  4LCF A;  1DAR A;  2Z5C B;  3ZKB A;  4U3B A;  1Y6Z A;  2BM1 A;  4NXN I;  4I3H A;  3K1J A;  1Z5C A;  4X65 E;  4P52 A;  3PS3 A;  1Z0E A;  3OTO E;  2AJ4 A;  4R1F A;  4KHP I;  3U1K A;  5C0X C;  4DV2 I;  4NXM I;  3PYG A;  1HNZ E;  1XNQ I;  1N34 I;  2A2D A;  2R3V A;  1Y4S A;  3T1H I;  2GS8 A;  2PO1 A;  2PNM A;  3T1Y E;  4AID A;  4GKK E;  1ZM3 A;  3J80 C;  1FJG I;  4LFA E;  3J81 Q;  2F4V E;  3JAM C;  3P76 A;  4JG4 A;  3M6A A;  2JEB B;  1E3H A;  2O1T A;  2PO2 A;  2BA0 G;  2JEA A;  5JEA B;  1OYR A;  3NZK A;  5K36 C;  3HKM A;  3PS1 A;  3ZKD A;  5DRQ A;  4HAC A;  4X66 E;  1IBM E;  3QT6 A;  4DR2 E;  5IT9 Q;  2HFU A;  3QT5 A;  3GCM A;  4LOM A;  4IFD E;  4YY3 E;  3B4T A;  1NHI A;  5DRO A;  3Q6M A;  4GKK I;  1Z0G A;  4LFA I;  4HXZ A;  2A2C A;  2F1D A;  2JE6 A;  5DRP A;  4AQY E;  4FW9 A;  4URL A;  4FWD A;  5C0X E;  2PO1 B;  2HHH E;  3Q6N A;  4FN5 A;  3P3C A;  2CZ9 A;  1ELO A;  3CDI A;  4LFC E;  1VIS A;  2O3Z A;  4DR3 I;  4X66 I;  1IBM I;  4DR2 I;  2XEX A;  4BA2 B;  5DNX A;  2UXD E;  5GMD A;  2GQ0 A;  2V34 A;  4FW7 A;  4YY3 I;  2UUB E;  2CGE A;  1E3P A;  5JEA C;  3K85 A;  4DR4 E;  4USK A;  2V2Q A;  1EI1 A;  1ZXM A;  4YHH E;  5FLX Q;  4FW3 A;  5K36 E;  4DUY E;  4FWG A;  4OO1 B;  4JI0 I;  2V2V A;  3HJC A;  1XHK A;  1HNX E;  3WU5 A;  1R6M A;  3J7A G;  2UXB E;  4GQU A;  4LFC I;  1KVK A;  1HR0 I;  3PYE A;  4PU9 A;  1NHH A;  5DRR A;  1ZM2 A;  2UUB I;  4LF9 E;  1H7U A;  4KQV A;  4DR4 I;  2WNR A;  4DV6 E;  4IZJ A;  4DR1 E;  2NN6 B;  3JAM Q;  4B3R E;  3ZZ0 A;  2J7K A;  2Q2E B;  2IER A;  4OZE A;  5FWK A;  1QZR A;  4DUY I;  3GLL A;  1UEK A;  3GON A;  3M7N D;  1H72 C;  2WP8 B;  1HNX I;  4JYA E;  1Z59 A;  2BA0 D;  2BV3 A;  1N36 E;  2LJP A;  4JI7 I;  4DPT A;  2IOP A;  1VI7 A;  5JEA E;  2HKE A;  3CDJ A;  4OO1 C;  5LMU E;  4IZJ D;  4LCG A;  1XMQ I;  4DU8 A;  4DV6 I;  4DPY A;  4DV7 E;  1ZXN A;  4LF6 E;  1WUU A;  2VQF E;  1BKN A;  4B3R I;  4MYU A;  1A6F A;  4DV3 E;  3H1C A;  1XMO E;  4B3S E;  1B62 A;  1S16 A;  2BA1 G;  2IOQ A;  4LFB E;  3V2U C;  4JYA I;  1N36 I;  1RRE A;  4HYM A;  2NN6 C;  2Z5B B;  4JV5 E;  3H4L A;  3M85 D;  1H7S A;  2C37 A;  5L3J A;  1N32 E;  3M7N G;  1HNW E;  3L7Z B;  3WU6 A;  1XNR E;  4QNJ A;  4JI5 E;  3HUL A;  4FW5 A;  4X65 I;  2C38 B;  4DV7 I;  4LF6 I;  1Z5A A;  2DEI A;  2VQF I;  1N0V C;  1FNM A;  4Z7Y A;  5LL6 R;  3OTO I;  2UUC E;  4DV3 I;  4LF5 E;  2HK2 A;  1HNZ I;  1XMO I;  1EA6 A;  5EL9 A;  4U3D A;  1UDQ A;  1Z0C A;  2Z5E A;  2PNZ A;  4LFB I;  4JI1 E;  4LPF A;  3T1Y I;  4OO1 E;  4DU7 A;  2ZM6 E;  2F4V I;  3PRY A;  1N32 I;  1HNW I;  1XNR I;  3PYD A;  1KIJ A;  4JI5 I;  4IFD A;  4P7A A;  4X62 E;  2UUC I;  3M85 G;  4LF5 I;  3ZM7 A;  4DV0 E;  4EMD A;  3WU3 A;  2VES A;  2NN6 E;  5BR8 E;  4IFD F;  2PO2 B;  2JEA B;  4JI1 I;  4LF4 E;  3DD6 A;  3ZZT A;  2ZM6 I;  2V2Z A;  1K47 A;  4HAC B;  2C39 A;  1J5E E;  4DR6 E;  2PO0 A;  4WUD A;  4AQY I;  4IFD D;  4DR5 E;  2PNZ B;  2X7I A;  1FKA E;  4B3S I;  3PS2 A;  4ZVI A;  2HHH I;  1Y4U A;  4X62 I;  4IS9 A;  1N33 E;  1U2R A;  1Z5B A;  3V5R A;  4DV0 I;  2OI2 A;  2JE6 B;  4B3M E;  4DPU A;  2UXD I;  2ZBK B;  5BR8 I;  3KRN A;  1S4E A;  4DV5 E;  5K36 A;  5C0X D;  2CG9 A;  2BA1 D;  2UXC E;  1PKP A;  1UDN A;  2Z5C A;  3J80 Q;  3WU4 A;  1FWK A;  4JI2 E;  4GKJ E;  4FW4 A;  2ZIT A;  4DR6 I;  1N0U A;  4UTG A;  3P3E A;  4YHH I;  4JI4 E;  4DUZ E;  5K36 F;  4DR5 I;  1P42 A;  1KTV A;  4Z7C A;  1Z0B A;  2UXB I;  4LCH A;  2VF3 A;  4MU3 A;  4IZK A;  4XTJ A;  1ZM9 A;  3P06 A;  4B3M I;  5GME A;  5K36 D;  4DV4 E;  4BA1 A;  4DV5 I;  4LF9 I;  3B78 A;  2UXC I;  4KHP E;  4JI2 I;  2WW4 A;  4OX9 E;  1YHC A;  4DR1 I;  4GKJ I;  1RHY A;  3F0N A;  1XNQ E;  2JEB A;  4DXL A;  1R6L A;  1IBK E;  3QT8 A;  5JEA A;  2GO3 A;  4JI4 I;  4DUZ I;  1IBL E;  1NZ0 A;  1USV A;  1UDS A;  2BR2 A;  2WNR B;  4IZJ B;  4MDT A;  4ED4 A;  2UUA E;  2O1V A;  1ZM4 A;  5FLX C;  5JEA F;  2V8P A;  4DV4 I;  1OYP A;  5LMU I;  3P3G A;  1B63 A;  2E1R A;  4OX9 I;  3LTO A;  4DPW A;  4DV1 E;  1RR9 A;  2HKJ A;  4FWH A;  4NBQ A;  4IZK B;  5JEA D;  1IBK I;  1UDO A;  2AE8 A;  1IBL I;  4DPX A;  1Z0W A;  4ISA A;  4BA1 B; 
#chains in the Genus database with same CATH homology
 5EL9 A;  5DNL A;  5ELW A;  4MU3 A;  1RHY A;  2F1D A;  4MU4 A;  4GQU A;  4MU1 A;  4LPF A;  5DNX A;  2AE8 A;  4MU0 A;  4QNK A;  4LOM A;  5EKW A;  4QNJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...