5ELWA

A. thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (r)-c348, to 1.36a resolution
Total Genus 65
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 65
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5elwA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5elwA02
4MU4A 2F1DA 5DNXA 5DNLA 2AE8A 4MU3A 5EL9A 4MU0A 4QNJA 4QNKA 1RHYA 5EKWA 5ELWA 4LOMA 4LPFA 4GQUA 4MU1A
chains in the Genus database with same CATH superfamily
2WP8A 4FW4A 3K1JA 1PVGA 2Q2EB 2GO3A 4XTJA 2UU9E 5C0XC 4GKJE 1E3PA 2DEJA 4LFCI 4FW6A 1XMOI 4N3OA 5GMEA 3GMEA 3B78A 2PNMA 4B3SI 1N33E 4OO1E 5DRRA 2Z5BA 3Q6NA 3PYDA 2ZM6I 4GKKI 2PNZB 5C0XE 3JAMC 2F1DA 3M6AA 1IBMI 2C37B 4NXMI 4JYAI 1ZM2A 4HY1A 4WUCA 4HYMA 2V2ZA 3GCMA 1YH8A 4JI5I 4X65E 2VQEE 3H4LA 4PU9A 2BM1A 1PKPA 4DPTA 3J7AM 4JI0E 2NN6C 3LNUA 3F0NA 3U1KA 4DR6E 4X64I 4BA2A 3T1HE 4DV7I 1FKAE 4DPXA 2UUCI 1D6TA 1HNWI 5JEAD 5DROA 3ZZUA 3M7ND 3T1YE 4AIMA 1N36I 2R3VA 4X65I 2GS8A 1RREA 4LF9I 2O1TA 4PRVA 4ED4A 4JI1I 4X64E 4IS9A 4JI6I 4DR1I 2XEXA 3K85A 4LF5I 2A2DA 3QT5A 4B3MI 4LFCE 2UXCI 4LCFA 3DD6A 4Z7YA 5K36A 3LTOA 4NXME 4DV5I 2V2QA 4FN5A 4NBQA 4LF6E 4LFBI 2O3ZA 2HK3A 1XNRI 1Y4UA 1R6LA 4KHPE 1UDNA 3P76A 3OTOE 4DV3E 4IFDB 4BA2B 2UXDI 4HXZA 3T1HI 4DV1I 4UTGA 4OKGA 1USUA 4DUYE 4DR2E 4DUZI 3K17A 4IFDC 2WW4A 4ISAA 3L7ZB 2DEIA 2VQFI 1Y5YA 4DV5E 4B3RE 3PYEA 1A6FA 3T1YI 5JEAB 1N36E 2E5LI 1N32I 1YHCA 2PO2B 5LMNI 5JEAE 2IOQA 4OO1F 2C39B 5K36F 4EMDA 4IFDD 4FWHA 3J81C 4B3TI 1HNXI 4IZJB 4DV1E 4FW3A 4LF4I 4JI6E 2PO2A 3PS2A 5DNXA 4JI8I 1KKHA 5IWAE 5FWKA 4LPFA 3L7ZA 4AIDA 4DV2I 2R42A 4JI3I 2X36A 3J81Q 4LF7I 1EA6A 5A2QQ 1Z5CA 2PNLA 2BM0A 2HFUA 2C38B 1XHKA 3HJCA 3WU6A 3WU3A 3CDJA 1H73A 5C0XA 4DR7E 1RR9A 2HK2A 1XNQI 4B3TE 2HKEA 3H1CA 2C38A 1Z0VA 2E1RA 2UXBE 5K36C 4DXLA 4LFAI 1N0UA 4GKJI 2OI2A 1OJ4A 2V8PA 4BA1A 4MQYA 4DR5I 1R6MA 4DUYI 2F4VI 5ELWA 3NZKA 5C0XF 4AQYI 1VISA 4JG4A 1N0VC 2IESA 1Z0WA 1FJGI 3GLLA 4FW7A 2UXBI 4FWDA 1Z0GA 4K0KE 2PO0A 3ZZTA 4OO1B 4IZKB 4LF8E 4MYUA 1XMQI 4R1FA 3P3GA 1I94E 4M1KA 1HK7A 1FI4A 2IERA 5C0XD 4DV2E 4JI3E 4AQYE 1ZM9A 4DU8A 3GONA 4YY3I 4ZVIA 3CWVA 4KQVA 4DR3E 1OYPA 2VF3A 2X7IA 4BA1B 5A2QC 4K0KI 4MU1A 2HHHE 4IFDF 1XNQE 2NPFA 2LJPA 4DV0E 5BR8I 4DV4I 2BV3A 2PO1A 4OO1C 2IOPA 4J3DA 2BA0G 1IBKE 2AJ4A 4JI4I 2Z5BB 2ZBKB 1NZ0A 5K36D 4FW5A 1WUUA 5K36B 4OO1D 3ZKBA 2O1UA 1B63A 4LF6I 3HKMA 2A2CA 1J5EI 4JI7E 4IFDE 1XNRE 1XMOE 4WUDA 3Q1QA 1E3HA 1XXEA 3JAMQ 4B3SE 3ZZ0A 4DV3I 1S4EA 2CG9A 2JE6A 3WU4A 2C39A 2UUBI 1BKNA 1N33I 4YHHI 1MX0A 5LMUI 1UDQA 3KRNA 1I94I 2JEBA 2BA0D 4DPYA 1KIJA 1Z0EA 1OYRA 3M85G 2BA1D 1J5EE 2BA1G 2UUAI 1Z5BA 1IBLE 3M7NG 1P42A 4P7AA 1HNWE 3P3CA 3PRYA 4MDTA 2JEBB 1QZRA 1KVKA 3ZM7A 2HFSA 1Z59A 4DV7E 1Z0TA 2Z5EA 2O1VA 1Y6ZA 4QNKA 4YHHE 3PYFA 4QNJA 2VESA 4JI8E 4DV4E 4Z7CA 2Z5CB 4DPUA 4LF9E 2BR2B 2GQ0A 3P06A 4OO1A 1FNMA 1IBLI 1VI7A 4DR1E 2PO0B 5JEAC 4URLA 4LCHA 4JI2E 3CDIA 2JE6B 1USVA 3B8HA 3D4JA 5L3JA 2NN6D 5DRPA 4X66I 3M85D 4LOMA 4MYTA 3PYGA 2WNRA 2UXCE 4DR4E 3V5RA 4JV5I 1NHJA 4OX9E 1Z0BA 2F4VE 2Z5CA 1NHIA 4MU3A 4JI2I 5JEAF 1FJGE 1Y60A 3OTOI 1ZM4A 2PO1B 2CGEA 3J80C 4X66E 3U1YA 1KTVA 3QT7A 4DUZE 1RHYA 4DV6I 2EFGA 4U3BA 4LCGA 4USKA 2VQFE 4OX9I 4HACB 1H7UA 1OYSA 2E5LE 2NN6E 1UEKA 4X62I 5FLXC 2VQEI 4YY3E 2C37A 3LPSA 2PNZA 2NN6B 4JI0I 4WUBA 3PS3A 2NN6F 3B4TA 4IZJD 2JEAA 1Z0CA 4IZKA 4LF4E 5DNLA 1MG7A 1N34I 4MU0A 4NXNI 2GO4A 1K47A 2CVEA 3QT8A 2WP8B 2ZITA 3WU5A 2JT2A 4JI4E 4OZEA 1HR0E 1H7SA 1FWLA 4LF7E 3B82A 4U3DA 4JI1E 2HKJA 5IT9Q 1U2RA 1Z5AA 5FLXQ 4DR7I 1UDOA 2J7KA 2CZ9A 4LF5E 4B3ME 4JI7I 1N34E 1FWKA 4LFAE 4PRXA 4DR5E 1H74A 4FW9A 3J80Q 3Q6MA 4DV6E 2UUBE 2J65A 1B62A 3QT6A 4FWGA 5K36E 5LMUE 2V2VA 3PS1A 1ZXNA 4RPFA 4LFBE 5LL6R 4USMA 3V2UC 4X62E 1PIEA 2UU9I 4KHPI 3UHMA 1ELOA 4MU4A 1H72C 2UXDE 2UUAE 1UDSA 1ZM3A 4DPWA 4LF8I 4HACA 2JEAB 4DR2I 1IBME 1ZXMA 4IZJA 2BR2A 4DU7A 3P3EA 4NXNE 3ZKDA 1MU5A 2V34A 1HNZE 4B3RI 1XMQE 2NN6A 1N32E 4JI5E 4IFDA 5LMNE 5JEAA 5IT9C 5GMDA 2HHHI 1HR0I 1NHHA 4DR6I 4AM3A 1HNXE 4DR3I 1DARA 3HULA 1S16A 1Y4SA 2UUCE 4P52A 5IWAI 2AE8A 4DV0I 2WNRB 4UT4A 4I3HA 5C0XB 1HNZI 2O1WA 3J7AG 5BR8E 1EI1A 2ZM6E 4GKKE 5EL9A 5EKWA 4DR4I 4JV5E 5DRQA 4GQUA 1IBKI 4JYAE
chains in the Genus database with same CATH topology
4MU4A 2F1DA 5DNXA 5DNLA 2AE8A 4MU3A 5EL9A 4MU0A 4QNJA 4QNKA 1RHYA 5EKWA 5ELWA 4LOMA 4LPFA 4GQUA 4MU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU4 A;  2F1D A;  5DNX A;  5DNL A;  2AE8 A;  4MU3 A;  5EL9 A;  4MU0 A;  4QNJ A;  4QNK A;  1RHY A;  5EKW A;  5ELW A;  4LOM A;  4LPF A;  4GQU A;  4MU1 A; 
#chains in the Genus database with same CATH topology
 2WP8 A;  4FW4 A;  3K1J A;  1PVG A;  2Q2E B;  2GO3 A;  4XTJ A;  2UU9 E;  5C0X C;  4GKJ E;  1E3P A;  2DEJ A;  4LFC I;  4FW6 A;  1XMO I;  4N3O A;  5GME A;  3GME A;  3B78 A;  2PNM A;  4B3S I;  1N33 E;  4OO1 E;  5DRR A;  2Z5B A;  3Q6N A;  3PYD A;  2ZM6 I;  4GKK I;  2PNZ B;  5C0X E;  3JAM C;  2F1D A;  3M6A A;  1IBM I;  2C37 B;  4NXM I;  4JYA I;  1ZM2 A;  4HY1 A;  4WUC A;  4HYM A;  2V2Z A;  3GCM A;  1YH8 A;  4JI5 I;  4X65 E;  2VQE E;  3H4L A;  4PU9 A;  2BM1 A;  1PKP A;  4DPT A;  3J7A M;  4JI0 E;  2NN6 C;  3LNU A;  3F0N A;  3U1K A;  4DR6 E;  4X64 I;  4BA2 A;  3T1H E;  4DV7 I;  1FKA E;  4DPX A;  2UUC I;  1D6T A;  1HNW I;  5JEA D;  5DRO A;  3ZZU A;  3M7N D;  3T1Y E;  4AIM A;  1N36 I;  2R3V A;  4X65 I;  2GS8 A;  1RRE A;  4LF9 I;  2O1T A;  4PRV A;  4ED4 A;  4JI1 I;  4X64 E;  4IS9 A;  4JI6 I;  4DR1 I;  2XEX A;  3K85 A;  4LF5 I;  2A2D A;  3QT5 A;  4B3M I;  4LFC E;  2UXC I;  4LCF A;  3DD6 A;  4Z7Y A;  5K36 A;  3LTO A;  4NXM E;  4DV5 I;  2V2Q A;  4FN5 A;  4NBQ A;  4LF6 E;  4LFB I;  2O3Z A;  2HK3 A;  1XNR I;  1Y4U A;  1R6L A;  4KHP E;  1UDN A;  3P76 A;  3OTO E;  4DV3 E;  4IFD B;  4BA2 B;  2UXD I;  4HXZ A;  3T1H I;  4DV1 I;  4UTG A;  4OKG A;  1USU A;  4DUY E;  4DR2 E;  4DUZ I;  3K17 A;  4IFD C;  2WW4 A;  4ISA A;  3L7Z B;  2DEI A;  2VQF I;  1Y5Y A;  4DV5 E;  4B3R E;  3PYE A;  1A6F A;  3T1Y I;  5JEA B;  1N36 E;  2E5L I;  1N32 I;  1YHC A;  2PO2 B;  5LMN I;  5JEA E;  2IOQ A;  4OO1 F;  2C39 B;  5K36 F;  4EMD A;  4IFD D;  4FWH A;  3J81 C;  4B3T I;  1HNX I;  4IZJ B;  4DV1 E;  4FW3 A;  4LF4 I;  4JI6 E;  2PO2 A;  3PS2 A;  5DNX A;  4JI8 I;  1KKH A;  5IWA E;  5FWK A;  4LPF A;  3L7Z A;  4AID A;  4DV2 I;  2R42 A;  4JI3 I;  2X36 A;  3J81 Q;  4LF7 I;  1EA6 A;  5A2Q Q;  1Z5C A;  2PNL A;  2BM0 A;  2HFU A;  2C38 B;  1XHK A;  3HJC A;  3WU6 A;  3WU3 A;  3CDJ A;  1H73 A;  5C0X A;  4DR7 E;  1RR9 A;  2HK2 A;  1XNQ I;  4B3T E;  2HKE A;  3H1C A;  2C38 A;  1Z0V A;  2E1R A;  2UXB E;  5K36 C;  4DXL A;  4LFA I;  1N0U A;  4GKJ I;  2OI2 A;  1OJ4 A;  2V8P A;  4BA1 A;  4MQY A;  4DR5 I;  1R6M A;  4DUY I;  2F4V I;  5ELW A;  3NZK A;  5C0X F;  4AQY I;  1VIS A;  4JG4 A;  1N0V C;  2IES A;  1Z0W A;  1FJG I;  3GLL A;  4FW7 A;  2UXB I;  4FWD A;  1Z0G A;  4K0K E;  2PO0 A;  3ZZT A;  4OO1 B;  4IZK B;  4LF8 E;  4MYU A;  1XMQ I;  4R1F A;  3P3G A;  1I94 E;  4M1K A;  1HK7 A;  1FI4 A;  2IER A;  5C0X D;  4DV2 E;  4JI3 E;  4AQY E;  1ZM9 A;  4DU8 A;  3GON A;  4YY3 I;  4ZVI A;  3CWV A;  4KQV A;  4DR3 E;  1OYP A;  2VF3 A;  2X7I A;  4BA1 B;  5A2Q C;  4K0K I;  4MU1 A;  2HHH E;  4IFD F;  1XNQ E;  2NPF A;  2LJP A;  4DV0 E;  5BR8 I;  4DV4 I;  2BV3 A;  2PO1 A;  4OO1 C;  2IOP A;  4J3D A;  2BA0 G;  1IBK E;  2AJ4 A;  4JI4 I;  2Z5B B;  2ZBK B;  1NZ0 A;  5K36 D;  4FW5 A;  1WUU A;  5K36 B;  4OO1 D;  3ZKB A;  2O1U A;  1B63 A;  4LF6 I;  3HKM A;  2A2C A;  1J5E I;  4JI7 E;  4IFD E;  1XNR E;  1XMO E;  4WUD A;  3Q1Q A;  1E3H A;  1XXE A;  3JAM Q;  4B3S E;  3ZZ0 A;  4DV3 I;  1S4E A;  2CG9 A;  2JE6 A;  3WU4 A;  2C39 A;  2UUB I;  1BKN A;  1N33 I;  4YHH I;  1MX0 A;  5LMU I;  1UDQ A;  3KRN A;  1I94 I;  2JEB A;  2BA0 D;  4DPY A;  1KIJ A;  1Z0E A;  1OYR A;  3M85 G;  2BA1 D;  1J5E E;  2BA1 G;  2UUA I;  1Z5B A;  1IBL E;  3M7N G;  1P42 A;  4P7A A;  1HNW E;  3P3C A;  3PRY A;  4MDT A;  2JEB B;  1QZR A;  1KVK A;  3ZM7 A;  2HFS A;  1Z59 A;  4DV7 E;  1Z0T A;  2Z5E A;  2O1V A;  1Y6Z A;  4QNK A;  4YHH E;  3PYF A;  4QNJ A;  2VES A;  4JI8 E;  4DV4 E;  4Z7C A;  2Z5C B;  4DPU A;  4LF9 E;  2BR2 B;  2GQ0 A;  3P06 A;  4OO1 A;  1FNM A;  1IBL I;  1VI7 A;  4DR1 E;  2PO0 B;  5JEA C;  4URL A;  4LCH A;  4JI2 E;  3CDI A;  2JE6 B;  1USV A;  3B8H A;  3D4J A;  5L3J A;  2NN6 D;  5DRP A;  4X66 I;  3M85 D;  4LOM A;  4MYT A;  3PYG A;  2WNR A;  2UXC E;  4DR4 E;  3V5R A;  4JV5 I;  1NHJ A;  4OX9 E;  1Z0B A;  2F4V E;  2Z5C A;  1NHI A;  4MU3 A;  4JI2 I;  5JEA F;  1FJG E;  1Y60 A;  3OTO I;  1ZM4 A;  2PO1 B;  2CGE A;  3J80 C;  4X66 E;  3U1Y A;  1KTV A;  3QT7 A;  4DUZ E;  1RHY A;  4DV6 I;  2EFG A;  4U3B A;  4LCG A;  4USK A;  2VQF E;  4OX9 I;  4HAC B;  1H7U A;  1OYS A;  2E5L E;  2NN6 E;  1UEK A;  4X62 I;  5FLX C;  2VQE I;  4YY3 E;  2C37 A;  3LPS A;  2PNZ A;  2NN6 B;  4JI0 I;  4WUB A;  3PS3 A;  2NN6 F;  3B4T A;  4IZJ D;  2JEA A;  1Z0C A;  4IZK A;  4LF4 E;  5DNL A;  1MG7 A;  1N34 I;  4MU0 A;  4NXN I;  2GO4 A;  1K47 A;  2CVE A;  3QT8 A;  2WP8 B;  2ZIT A;  3WU5 A;  2JT2 A;  4JI4 E;  4OZE A;  1HR0 E;  1H7S A;  1FWL A;  4LF7 E;  3B82 A;  4U3D A;  4JI1 E;  2HKJ A;  5IT9 Q;  1U2R A;  1Z5A A;  5FLX Q;  4DR7 I;  1UDO A;  2J7K A;  2CZ9 A;  4LF5 E;  4B3M E;  4JI7 I;  1N34 E;  1FWK A;  4LFA E;  4PRX A;  4DR5 E;  1H74 A;  4FW9 A;  3J80 Q;  3Q6M A;  4DV6 E;  2UUB E;  2J65 A;  1B62 A;  3QT6 A;  4FWG A;  5K36 E;  5LMU E;  2V2V A;  3PS1 A;  1ZXN A;  4RPF A;  4LFB E;  5LL6 R;  4USM A;  3V2U C;  4X62 E;  1PIE A;  2UU9 I;  4KHP I;  3UHM A;  1ELO A;  4MU4 A;  1H72 C;  2UXD E;  2UUA E;  1UDS A;  1ZM3 A;  4DPW A;  4LF8 I;  4HAC A;  2JEA B;  4DR2 I;  1IBM E;  1ZXM A;  4IZJ A;  2BR2 A;  4DU7 A;  3P3E A;  4NXN E;  3ZKD A;  1MU5 A;  2V34 A;  1HNZ E;  4B3R I;  1XMQ E;  2NN6 A;  1N32 E;  4JI5 E;  4IFD A;  5LMN E;  5JEA A;  5IT9 C;  5GMD A;  2HHH I;  1HR0 I;  1NHH A;  4DR6 I;  4AM3 A;  1HNX E;  4DR3 I;  1DAR A;  3HUL A;  1S16 A;  1Y4S A;  2UUC E;  4P52 A;  5IWA I;  2AE8 A;  4DV0 I;  2WNR B;  4UT4 A;  4I3H A;  5C0X B;  1HNZ I;  2O1W A;  3J7A G;  5BR8 E;  1EI1 A;  2ZM6 E;  4GKK E;  5EL9 A;  5EKW A;  4DR4 I;  4JV5 E;  5DRQ A;  4GQU A;  1IBK I;  4JYA E; 
#chains in the Genus database with same CATH homology
 4MU4 A;  2F1D A;  5DNX A;  5DNL A;  2AE8 A;  4MU3 A;  5EL9 A;  4MU0 A;  4QNJ A;  4QNK A;  1RHY A;  5EKW A;  5ELW A;  4LOM A;  4LPF A;  4GQU A;  4MU1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...