The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
185
|
structure length |
185
|
Chain Sequence |
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb |
| molecule tags |
Lyase
|
| source organism |
Arabidopsis thaliana
|
| molecule keywords |
Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
|
| total genus |
58
|
| structure length |
185
|
| sequence length |
185
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
4.2.1.19: Imidazoleglycerol-phosphate dehydratase. |
| pdb deposition date | 2014-06-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00475 | IGPD | Imidazoleglycerol-phosphate dehydratase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | Imidazole glycerol phosphate dehydratase; domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | Imidazole glycerol phosphate dehydratase; domain 1 |
#chains in the Genus database with same CATH superfamily 2F1D A; 4GQU A; 4MU1 A; 4QNK A; 4LPF A; 4LOM A; 2AE8 A; 4MU0 A; 5DNX A; 5EL9 A; 5ELW A; 4QNJ A; 4MU4 A; 5DNL A; 1RHY A; 5EKW A; 4MU3 A; #chains in the Genus database with same CATH topology 5K36 E; 1ZXN A; 4B3T I; 1RRE A; 1B62 A; 1Y6Z A; 3B78 A; 1YH8 A; 2F4V I; 3LTO A; 4IFD A; 1D6T A; 2JEB B; 1IBL I; 2UXC I; 1ZM2 A; 3WU4 A; 1OYS A; 4FWG A; 3U1K A; 3M85 D; 2HHH E; 1H7S A; 2NN6 B; 1N0U A; 4X66 E; 2UXB I; 4JI1 I; 2GS8 A; 5IWA I; 5DRP A; 4DV2 I; 1XMO I; 4B3S I; 3P3G A; 3M7N D; 2VQF I; 2NPF A; 4LCF A; 1IBL E; 1FJG E; 1XNR E; 2BA0 D; 4ISA A; 5ELW A; 3ZZU A; 4DV0 E; 4DR1 I; 2HFS A; 4EMD A; 4NXM I; 1MX0 A; 1XMO E; 4NXN E; 2VQF E; 1KIJ A; 1UDQ A; 4FW6 A; 1OYP A; 4KHP I; 3PS1 A; 1N34 I; 2JEA B; 4JI2 E; 3GCM A; 1XNQ E; 2WNR A; 1KTV A; 4PU9 A; 1Z5B A; 3K17 A; 4IZJ B; 3J81 C; 4KHP E; 3QT6 A; 4MDT A; 4GKJ I; 1N33 I; 4DR4 E; 5DNL A; 4X64 E; 2R42 A; 5LMN I; 4HY1 A; 2X36 A; 5K36 A; 1N32 I; 2BM0 A; 4HYM A; 3WU3 A; 1N33 E; 4WUB A; 3ZZT A; 4OKG A; 2E5L I; 1XMQ I; 5K36 C; 1H72 C; 3JAM C; 1FNM A; 5GMD A; 2V2Q A; 4OO1 A; 2Q2E B; 3GME A; 4LF4 I; 4JV5 E; 5JEA B; 4LFB E; 1VIS A; 2V34 A; 5JEA A; 4B3M E; 1PVG A; 1XHK A; 1Z0G A; 4UT4 A; 4PRX A; 5A2Q C; 4DU7 A; 3J81 Q; 4FW3 A; 3GON A; 4JI5 E; 5DRQ A; 4DV3 E; 4DXL A; 1VI7 A; 4DPY A; 4JI8 E; 4DPU A; 5BR8 I; 2UU9 E; 2J65 A; 4AQY E; 5IT9 C; 4JI4 I; 2CG9 A; 1H73 A; 2CZ9 A; 1HNX I; 4DUY I; 2NN6 E; 2BR2 B; 2VES A; 1N36 E; 2PNZ A; 4OO1 F; 1UDO A; 4AID A; 4LF6 I; 2C37 B; 1NZ0 A; 2O1V A; 4FN5 A; 5JEA F; 3JAM Q; 4YY3 I; 1HNX E; 2C37 A; 4DUY E; 4LCG A; 1USV A; 4IFD D; 5DRR A; 2V2Z A; 4DV1 E; 1ELO A; 2HK3 A; 2C38 A; 2Z5B A; 4LF9 E; 4HAC A; 4DR2 E; 2PO1 B; 4LF7 E; 1Z0E A; 2PO1 A; 2PO0 B; 4DV5 I; 4LFA E; 4FW9 A; 5DRO A; 3T1H I; 4J3D A; 5C0X B; 3P76 A; 4JI0 E; 1ZXM A; 3K1J A; 4GKK E; 1MG7 A; 2R3V A; 3D4J A; 2HFU A; 4IZK A; 1ZM9 A; 3PYE A; 4M1K A; 3J7A G; 3T1H E; 5IT9 Q; 2HHH I; 1R6L A; 4X66 I; 2HK2 A; 5LMU E; 3P06 A; 1I94 E; 4LCH A; 4DV7 I; 2Z5C B; 3T1Y I; 1FJG I; 1PKP A; 1XXE A; 2JEB A; 1KKH A; 1XNR I; 1FI4 A; 1Y4U A; 4DV0 I; 1H7U A; 2NN6 A; 4K0K E; 4OO1 E; 4IFD C; 4X62 E; 1RHY A; 4MQY A; 3DD6 A; 3J80 Q; 4NXN I; 1P42 A; 4DV7 E; 5K36 D; 3UHM A; 3T1Y E; 5JEA E; 5C0X F; 4JI2 I; 4JI6 E; 1IBM I; 1XNQ I; 3F0N A; 4OZE A; 2E1R A; 3HUL A; 1R6M A; 3ZKD A; 4OX9 I; 1J5E E; 2HKE A; 4YHH E; 1QZR A; 1IBM E; 1N0V C; 2JEA A; 4UTG A; 2CVE A; 5GME A; 4DR4 I; 2GO3 A; 4X64 I; 1YHC A; 3L7Z B; 2O1W A; 2XEX A; 4OX9 E; 4IZJ A; 2NN6 F; 1H74 A; 1Y5Y A; 4DV6 E; 4FWH A; 1USU A; 4MU1 A; 3U1Y A; 1HNW E; 4QNJ A; 2UUB I; 4Z7C A; 2JE6 B; 3KRN A; 4N3O A; 4I3H A; 4JV5 I; 4LFB I; 3GLL A; 4BA1 B; 4B3M I; 1IBK I; 2IOQ A; 4JI7 E; 2UUB E; 3OTO E; 4WUD A; 4X65 E; 1Z0T A; 4GQU A; 4PRV A; 5C0X E; 4JI5 I; 4DR3 E; 4DV3 I; 1OYR A; 1IBK E; 2EFG A; 4JI8 I; 4U3B A; 1HNZ I; 2UU9 I; 4OO1 C; 4AQY I; 1B63 A; 2UUC E; 5JEA C; 4JI3 I; 1N36 I; 4LOM A; 2PNM A; 3ZZ0 A; 4DUZ I; 1HNZ E; 1Z0C A; 4IS9 A; 3B4T A; 1Z59 A; 4MYU A; 3V5R A; 4JI3 E; 4DV1 I; 1RR9 A; 2BR2 A; 1WUU A; 4DUZ E; 2UUA I; 2WP8 B; 4Z7Y A; 4LF9 I; 4DR2 I; 2C39 B; 1Z0V A; 2ZBK B; 1EI1 A; 3K85 A; 4LF7 I; 2F1D A; 2J7K A; 2WW4 A; 4DPX A; 4LFA I; 1EA6 A; 4URL A; 3J80 C; 4JI0 I; 2UUA E; 4DPW A; 4LF8 E; 4P7A A; 1Y4S A; 4LF5 I; 2NN6 D; 4B3R E; 4GKK I; 1K47 A; 2X7I A; 2A2D A; 4JYA E; 1Z5C A; 2PO0 A; 4USM A; 3P3C A; 4LF5 E; 5LMU I; 4XTJ A; 3LPS A; 5C0X A; 4BA2 B; 4AM3 A; 2BA1 D; 1I94 I; 3PYD A; 1S4E A; 1PIE A; 1A6F A; 2BM1 A; 5C0X C; 1Z0B A; 1HR0 E; 4K0K I; 1S16 A; 4X62 I; 4DR7 I; 2O1U A; 2IOP A; 4IZJ D; 2Z5C A; 4JI6 I; 2ZIT A; 1FKA E; 4MYT A; 1E3P A; 4DR7 E; 5FLX Q; 4RPF A; 1MU5 A; 2PNL A; 3PYF A; 5DNX A; 1J5E I; 2BA1 G; 2PO2 B; 2A2C A; 4YHH I; 3Q6N A; 2NN6 C; 2PO2 A; 2Z5E A; 4IFD B; 3PRY A; 2IES A; 2BV3 A; 1Z0W A; 4ED4 A; 3QT7 A; 4FW4 A; 2OI2 A; 4OO1 D; 2UXD I; 4B3T E; 5LL6 R; 4DV6 I; 3PYG A; 2F4V E; 1OJ4 A; 5JEA D; 2UXC E; 3ZKB A; 2GQ0 A; 1HNW I; 2O1T A; 3L7Z A; 2UXD E; 2HKJ A; 2UXB E; 3LNU A; 4JI1 E; 5IWA E; 1UEK A; 4DV2 E; 2VF3 A; 4B3S E; 2JT2 A; 2GO4 A; 5EKW A; 4JI7 I; 2WNR B; 3OTO I; 4IFD F; 4X65 I; 1UDN A; 1ZM3 A; 2JE6 A; 4DR1 E; 3M85 G; 4NXM E; 4DR3 I; 3J7A M; 2V8P A; 4BA1 A; 1N34 E; 3M7N G; 3WU6 A; 4LFC I; 4QNK A; 2UUC I; 3H4L A; 4MU0 A; 5K36 B; 3ZM7 A; 4DPT A; 2BA0 G; 4DR6 I; 1KVK A; 3WU5 A; 1HK7 A; 4LFC E; 3PS2 A; 4DR5 I; 4GKJ E; 1NHJ A; 1NHH A; 4DR6 E; 5FWK A; 5LMN E; 4OO1 B; 1E3H A; 4AIM A; 1U2R A; 1N32 E; 5C0X D; 4NBQ A; 3QT8 A; 4DR5 E; 2DEI A; 3V2U C; 2E5L E; 4MU4 A; 2LJP A; 1XMQ E; 3P3E A; 3Q1Q A; 3HJC A; 4HXZ A; 3B8H A; 4LF8 I; 3QT5 A; 1FWL A; 2O3Z A; 4ZVI A; 4LF4 E; 4B3R I; 2WP8 A; 1NHI A; 2C39 A; 5K36 F; 4DV4 I; 4JYA I; 5L3J A; 1DAR A; 4IFD E; 2AJ4 A; 5FLX C; 3CDI A; 4LPF A; 3NZK A; 4WUC A; 1FWK A; 2VQE I; 4U3D A; 2CGE A; 1Y60 A; 2PNZ B; 4DV4 E; 4JG4 A; 3B82 A; 3Q6M A; 5BR8 E; 1HR0 I; 4JI4 E; 2AE8 A; 2VQE E; 3PS3 A; 4BA2 A; 2C38 B; 2Z5B B; 4KQV A; 2IER A; 4HAC B; 4USK A; 4FWD A; 2ZM6 I; 4LF6 E; 3CWV A; 4YY3 E; 1Z5A A; 3M6A A; 5A2Q Q; 1UDS A; 4FW7 A; 2ZM6 E; 3HKM A; 1BKN A; 4IZK B; 4P52 A; 1ZM4 A; 3H1C A; 4R1F A; 4FW5 A; 3CDJ A; 5EL9 A; 4DV5 E; 2DEJ A; 4DU8 A; 4MU3 A; 2V2V A; #chains in the Genus database with same CATH homology 2F1D A; 4GQU A; 4MU1 A; 4QNK A; 4LPF A; 4LOM A; 2AE8 A; 4MU0 A; 5DNX A; 5EL9 A; 5ELW A; 4QNJ A; 4MU4 A; 5DNL A; 1RHY A; 5EKW A; 4MU3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
