4QNKA

The structure of wt a. thaliana igpd2 in complex with mn2+ and phosphate
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
185
structure length
185
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 58
structure length 185
sequence length 185
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2014-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4qnkA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4qnkA02
5DNLA 4LPFA 4MU3A 1RHYA 4MU0A 4MU1A 4QNJA 5ELWA 2AE8A 4MU4A 4GQUA 2F1DA 4QNKA 5DNXA 5EKWA 4LOMA 5EL9A
chains in the Genus database with same CATH superfamily
1MU5A 4URLA 1J5EE 4DR4I 1WUUA 2GQ0A 1Y4SA 5IWAE 4GKJI 4DV2E 2R42A 5FLXC 2C38A 2C37B 3KRNA 4IFDB 3HULA 3HJCA 3T1HE 1E3HA 3V5RA 3UHMA 3M6AA 4JYAI 2DEJA 1N32I 4AQYE 4MU0A 4MYUA 2ZM6I 4DU8A 4IFDF 2X7IA 2HK2A 2PNZB 1IBMI 4YY3E 1FI4A 4LCHA 4OO1D 2UXBE 1P42A 1FJGE 2BR2A 4JI1E 4MU1A 4DV5I 4JI8E 2ZITA 1H73A 5IWAI 2VQFE 4DV2I 4PRXA 2C39A 2E5LI 4B3MI 1VI7A 3WU5A 3Q6MA 4YHHE 4IZKB 2NN6B 1UEKA 2VESA 1HNXE 5C0XC 3T1HI 4AIDA 2NN6F 4AQYI 2WNRB 4BA2A 3J81Q 1ZXMA 3H4LA 2UUBE 4NXME 5DRRA 3GONA 4YY3I 4UTGA 4IFDE 3J7AG 4JG4A 4LF9E 3K1JA 4LCFA 4JI1I 3J80Q 2WP8B 1XMQE 4FWGA 4J3DA 5GMEA 4JI8I 4USMA 2AJ4A 1ZM4A 5IT9Q 4OKGA 2VQFI 1HK7A 4DR7E 3CWVA 2JT2A 2CGEA 4YHHI 3WU4A 1DARA 5JEAB 1ZM3A 2BA1D 1Z0TA 1HNXI 2Q2EB 4B3RE 4OO1C 3K85A 4X66E 1RR9A 3L7ZA 2IESA 5JEAF 1B62A 2BA1G 4LCGA 2A2CA 2UUBI 4LF6E 4NXMI 2NN6E 3B82A 4LFAE 2DEIA 3PYEA 4X62E 4BA1B 4I3HA 4LF9I 3JAMQ 3B8HA 4JI4E 1XMQI 1KTVA 1XNRE 3U1KA 4Z7CA 1FNMA 2C37A 4UT4A 4ED4A 4DR7I 4IFDA 2VF3A 2UXCE 3PS2A 2XEXA 3J81C 4B3RI 4LOMA 1N0VC 1H7SA 1Z0EA 4RPFA 4AIMA 2PNZA 2O3ZA 3D4JA 1ZM9A 4LF6I 3ZZUA 3DD6A 5JEAE 3J80C 4IZJB 1E3PA 4X62I 4LFBI 3B4TA 4XTJA 4AM3A 5IT9C 1N34I 4EMDA 4JI4I 4K0KI 4P52A 1NHJA 1XNRI 2JEBA 2F4VI 4IZKA 2NN6A 3GMEA 1HNZE 4DPYA 4DR2I 4IFDD 2Z5EA 2WNRA 4QNJA 4DUZE 1NHIA 2E1RA 4NBQA 1S4EA 1Y5YA 4DPUA 1FWLA 1RREA 1N33E 2BM1A 2V2ZA 3JAMC 4DUYE 4PRVA 1J5EI 4HACB 2WP8A 4DV4E 2X36A 2NPFA 1N36E 2HKJA 5EL9A 4FN5A 4FW9A 4FWDA 1KIJA 2HK3A 4NXNE 4MDTA 5JEAA 2NN6D 1HNZI 4MU4A 1XMOE 4GKKE 3H1CA 2BA0D 5K36B 1A6FA 4JI0E 4DUZI 2UXDE 4JI7E 2JEAB 5DNLA 1FKAE 2UXBI 1FJGI 2UUCE 4BA1A 3PYGA 5K36F 4N3OA 2BA0G 4DV0E 2JE6B 2IOPA 2CG9A 4LF7E 2AE8A 4DPTA 3F0NA 4IFDC 1XNQE 1UDOA 3M85G 1N36I 2PNMA 2UU9E 4FW7A 2VQEE 4DU7A 4JV5E 4NXNI 3T1YE 5L3JA 3LNUA 2HFUA 4X65E 2V2VA 4P7AA 1HNWE 2BR2B 1KKHA 3PYDA 5A2QQ 5JEAD 5BR8E 4LF4E 4X64E 5EKWA 2HHHE 1R6MA 1XMOI 2O1TA 1YHCA 4PU9A 4DR6E 2EFGA 4HXZA 5LMNE 4ISAA 2UXDI 4JI7I 3ZZTA 1ZM2A 4U3BA 4U3DA 4IZJA 3GLLA 2UUCI 4USKA 1HR0E 2ZBKB 4DV0I 1XHKA 1H72C 1UDNA 4LF7I 2NN6C 1USVA 5K36E 4MQYA 1XNQI 2O1VA 3HKMA 2PO2B 2UU9I 4KHPE 2VQEI 2Z5CB 3WU3A 4JV5I 2Z5BB 4M1KA 4DV1E 3T1YI 4DR5E 4X65I 4DR4E 1HNWI 3WU6A 4HY1A 5BR8I 2GO4A 4X64I 4WUBA 3PYFA 4X66I 4LF4I 2A2DA 3QT6A 3OTOE 4KQVA 3V2UC 2WW4A 4DR6I 1PKPA 5LMNI 2J65A 4LFAI 1I94E 3J7AM 1MG7A 1OYSA 2CZ9A 4JYAE 1N32E 4IZJD 4Z7YA 3NZKA 3ZKDA 2PO0B 5C0XB 1HR0I 1MX0A 1OJ4A 3CDJA 5JEAC 4GQUA 1Z0VA 2PO1B 1XXEA 2OI2A 5LMUE 5C0XF 5A2QC 4KHPI 1EA6A 1YH8A 4DV1I 2UXCI 4DR5I 2IOQA 1Z0WA 1RHYA 3Q1QA 5K36A 1Y60A 2E5LE 4B3ME 3ZKBA 3OTOI 4B3TE 2JEAA 2GO3A 1K47A 3P3EA 3GCMA 1Y6ZA 1QZRA 4DV7E 4FW3A 4DPWA 1I94I 2JE6A 3PS3A 1H74A 3B78A 4OZEA 4OO1B 1H7UA 1OYPA 1IBLE 4LF8E 3LTOA 1PVGA 5FWKA 5LMUI 3M7ND 4JI6E 4OO1F 1Z0GA 4JI3E 5ELWA 4JI2E 2C38B 1Z0BA 5C0XE 4FW6A 2V8PA 5GMDA 4LFCE 1NZ0A 3K17A 2CVEA 3M7NG 5K36D 1EI1A 2JEBB 1BKNA 1Z59A 3LPSA 3M85D 4B3TI 1N33I 1IBKE 3P76A 1R6LA 4OX9E 2LJPA 4DUYI 1Z0CA 4DV7I 1OYRA 4DV4I 5LL6R 3ZZ0A 4QNKA 4FW4A 5DNXA 5DROA 4FW5A 2V34A 2PO2A 4DR3E 1Z5BA 1IBLI 2V2QA 2Z5CA 3PRYA 4LF8I 2Z5BA 4DR1E 3ZM7A 4DV3E 4JI6I 4FWHA 4R1FA 4DV6E 4WUDA 1N0UA 4JI2I 4JI3I 4GKKI 1UDSA 5FLXQ 2C39B 2PNLA 4JI0I 2UUAE 4ZVIA 4LFCI 4OO1E 4B3SE 1UDQA 1Y4UA 4LPFA 2IERA 1IBKI 3QT7A 4WUCA 4OX9I 1ZXNA 4MYTA 2GS8A 2HFSA 2PO0A 4BA2B 5C0XA 2BM0A 1B63A 4DXLA 4LF5E 2F1DA 1Z5CA 4JI5E 1D6TA 5DRQA 3P3GA 2PO1A 3Q6NA 1USUA 4DR3I 1U2RA 1FWKA 2HKEA 3U1YA 3QT8A 3CDIA 3PS1A 4GKJE 4DR1I 4LFBE 5K36C 3QT5A 4IS9A 2R3VA 1N34E 3P3CA 4DV3I 2HHHI 4K0KE 4DV6I 2F4VE 4DPXA 2O1WA 2UUAI 4MU3A 2O1UA 4B3SI 4DR2E 4HYMA 1Z5AA 4HACA 2ZM6E 2J7KA 1S16A 2BV3A 3L7ZB 3P06A 1VISA 1IBME 5C0XD 1ELOA 4LF5I 1KVKA 4OO1A 1NHHA 4JI5I 1PIEA 4DV5E 5DRPA
chains in the Genus database with same CATH topology
5DNLA 4LPFA 4MU3A 1RHYA 4MU0A 4MU1A 4QNJA 5ELWA 2AE8A 4MU4A 4GQUA 2F1DA 4QNKA 5DNXA 5EKWA 4LOMA 5EL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DNL A;  4LPF A;  4MU3 A;  1RHY A;  4MU0 A;  4MU1 A;  4QNJ A;  5ELW A;  2AE8 A;  4MU4 A;  4GQU A;  2F1D A;  4QNK A;  5DNX A;  5EKW A;  4LOM A;  5EL9 A; 
#chains in the Genus database with same CATH topology
 1MU5 A;  4URL A;  1J5E E;  4DR4 I;  1WUU A;  2GQ0 A;  1Y4S A;  5IWA E;  4GKJ I;  4DV2 E;  2R42 A;  5FLX C;  2C38 A;  2C37 B;  3KRN A;  4IFD B;  3HUL A;  3HJC A;  3T1H E;  1E3H A;  3V5R A;  3UHM A;  3M6A A;  4JYA I;  2DEJ A;  1N32 I;  4AQY E;  4MU0 A;  4MYU A;  2ZM6 I;  4DU8 A;  4IFD F;  2X7I A;  2HK2 A;  2PNZ B;  1IBM I;  4YY3 E;  1FI4 A;  4LCH A;  4OO1 D;  2UXB E;  1P42 A;  1FJG E;  2BR2 A;  4JI1 E;  4MU1 A;  4DV5 I;  4JI8 E;  2ZIT A;  1H73 A;  5IWA I;  2VQF E;  4DV2 I;  4PRX A;  2C39 A;  2E5L I;  4B3M I;  1VI7 A;  3WU5 A;  3Q6M A;  4YHH E;  4IZK B;  2NN6 B;  1UEK A;  2VES A;  1HNX E;  5C0X C;  3T1H I;  4AID A;  2NN6 F;  4AQY I;  2WNR B;  4BA2 A;  3J81 Q;  1ZXM A;  3H4L A;  2UUB E;  4NXM E;  5DRR A;  3GON A;  4YY3 I;  4UTG A;  4IFD E;  3J7A G;  4JG4 A;  4LF9 E;  3K1J A;  4LCF A;  4JI1 I;  3J80 Q;  2WP8 B;  1XMQ E;  4FWG A;  4J3D A;  5GME A;  4JI8 I;  4USM A;  2AJ4 A;  1ZM4 A;  5IT9 Q;  4OKG A;  2VQF I;  1HK7 A;  4DR7 E;  3CWV A;  2JT2 A;  2CGE A;  4YHH I;  3WU4 A;  1DAR A;  5JEA B;  1ZM3 A;  2BA1 D;  1Z0T A;  1HNX I;  2Q2E B;  4B3R E;  4OO1 C;  3K85 A;  4X66 E;  1RR9 A;  3L7Z A;  2IES A;  5JEA F;  1B62 A;  2BA1 G;  4LCG A;  2A2C A;  2UUB I;  4LF6 E;  4NXM I;  2NN6 E;  3B82 A;  4LFA E;  2DEI A;  3PYE A;  4X62 E;  4BA1 B;  4I3H A;  4LF9 I;  3JAM Q;  3B8H A;  4JI4 E;  1XMQ I;  1KTV A;  1XNR E;  3U1K A;  4Z7C A;  1FNM A;  2C37 A;  4UT4 A;  4ED4 A;  4DR7 I;  4IFD A;  2VF3 A;  2UXC E;  3PS2 A;  2XEX A;  3J81 C;  4B3R I;  4LOM A;  1N0V C;  1H7S A;  1Z0E A;  4RPF A;  4AIM A;  2PNZ A;  2O3Z A;  3D4J A;  1ZM9 A;  4LF6 I;  3ZZU A;  3DD6 A;  5JEA E;  3J80 C;  4IZJ B;  1E3P A;  4X62 I;  4LFB I;  3B4T A;  4XTJ A;  4AM3 A;  5IT9 C;  1N34 I;  4EMD A;  4JI4 I;  4K0K I;  4P52 A;  1NHJ A;  1XNR I;  2JEB A;  2F4V I;  4IZK A;  2NN6 A;  3GME A;  1HNZ E;  4DPY A;  4DR2 I;  4IFD D;  2Z5E A;  2WNR A;  4QNJ A;  4DUZ E;  1NHI A;  2E1R A;  4NBQ A;  1S4E A;  1Y5Y A;  4DPU A;  1FWL A;  1RRE A;  1N33 E;  2BM1 A;  2V2Z A;  3JAM C;  4DUY E;  4PRV A;  1J5E I;  4HAC B;  2WP8 A;  4DV4 E;  2X36 A;  2NPF A;  1N36 E;  2HKJ A;  5EL9 A;  4FN5 A;  4FW9 A;  4FWD A;  1KIJ A;  2HK3 A;  4NXN E;  4MDT A;  5JEA A;  2NN6 D;  1HNZ I;  4MU4 A;  1XMO E;  4GKK E;  3H1C A;  2BA0 D;  5K36 B;  1A6F A;  4JI0 E;  4DUZ I;  2UXD E;  4JI7 E;  2JEA B;  5DNL A;  1FKA E;  2UXB I;  1FJG I;  2UUC E;  4BA1 A;  3PYG A;  5K36 F;  4N3O A;  2BA0 G;  4DV0 E;  2JE6 B;  2IOP A;  2CG9 A;  4LF7 E;  2AE8 A;  4DPT A;  3F0N A;  4IFD C;  1XNQ E;  1UDO A;  3M85 G;  1N36 I;  2PNM A;  2UU9 E;  4FW7 A;  2VQE E;  4DU7 A;  4JV5 E;  4NXN I;  3T1Y E;  5L3J A;  3LNU A;  2HFU A;  4X65 E;  2V2V A;  4P7A A;  1HNW E;  2BR2 B;  1KKH A;  3PYD A;  5A2Q Q;  5JEA D;  5BR8 E;  4LF4 E;  4X64 E;  5EKW A;  2HHH E;  1R6M A;  1XMO I;  2O1T A;  1YHC A;  4PU9 A;  4DR6 E;  2EFG A;  4HXZ A;  5LMN E;  4ISA A;  2UXD I;  4JI7 I;  3ZZT A;  1ZM2 A;  4U3B A;  4U3D A;  4IZJ A;  3GLL A;  2UUC I;  4USK A;  1HR0 E;  2ZBK B;  4DV0 I;  1XHK A;  1H72 C;  1UDN A;  4LF7 I;  2NN6 C;  1USV A;  5K36 E;  4MQY A;  1XNQ I;  2O1V A;  3HKM A;  2PO2 B;  2UU9 I;  4KHP E;  2VQE I;  2Z5C B;  3WU3 A;  4JV5 I;  2Z5B B;  4M1K A;  4DV1 E;  3T1Y I;  4DR5 E;  4X65 I;  4DR4 E;  1HNW I;  3WU6 A;  4HY1 A;  5BR8 I;  2GO4 A;  4X64 I;  4WUB A;  3PYF A;  4X66 I;  4LF4 I;  2A2D A;  3QT6 A;  3OTO E;  4KQV A;  3V2U C;  2WW4 A;  4DR6 I;  1PKP A;  5LMN I;  2J65 A;  4LFA I;  1I94 E;  3J7A M;  1MG7 A;  1OYS A;  2CZ9 A;  4JYA E;  1N32 E;  4IZJ D;  4Z7Y A;  3NZK A;  3ZKD A;  2PO0 B;  5C0X B;  1HR0 I;  1MX0 A;  1OJ4 A;  3CDJ A;  5JEA C;  4GQU A;  1Z0V A;  2PO1 B;  1XXE A;  2OI2 A;  5LMU E;  5C0X F;  5A2Q C;  4KHP I;  1EA6 A;  1YH8 A;  4DV1 I;  2UXC I;  4DR5 I;  2IOQ A;  1Z0W A;  1RHY A;  3Q1Q A;  5K36 A;  1Y60 A;  2E5L E;  4B3M E;  3ZKB A;  3OTO I;  4B3T E;  2JEA A;  2GO3 A;  1K47 A;  3P3E A;  3GCM A;  1Y6Z A;  1QZR A;  4DV7 E;  4FW3 A;  4DPW A;  1I94 I;  2JE6 A;  3PS3 A;  1H74 A;  3B78 A;  4OZE A;  4OO1 B;  1H7U A;  1OYP A;  1IBL E;  4LF8 E;  3LTO A;  1PVG A;  5FWK A;  5LMU I;  3M7N D;  4JI6 E;  4OO1 F;  1Z0G A;  4JI3 E;  5ELW A;  4JI2 E;  2C38 B;  1Z0B A;  5C0X E;  4FW6 A;  2V8P A;  5GMD A;  4LFC E;  1NZ0 A;  3K17 A;  2CVE A;  3M7N G;  5K36 D;  1EI1 A;  2JEB B;  1BKN A;  1Z59 A;  3LPS A;  3M85 D;  4B3T I;  1N33 I;  1IBK E;  3P76 A;  1R6L A;  4OX9 E;  2LJP A;  4DUY I;  1Z0C A;  4DV7 I;  1OYR A;  4DV4 I;  5LL6 R;  3ZZ0 A;  4QNK A;  4FW4 A;  5DNX A;  5DRO A;  4FW5 A;  2V34 A;  2PO2 A;  4DR3 E;  1Z5B A;  1IBL I;  2V2Q A;  2Z5C A;  3PRY A;  4LF8 I;  2Z5B A;  4DR1 E;  3ZM7 A;  4DV3 E;  4JI6 I;  4FWH A;  4R1F A;  4DV6 E;  4WUD A;  1N0U A;  4JI2 I;  4JI3 I;  4GKK I;  1UDS A;  5FLX Q;  2C39 B;  2PNL A;  4JI0 I;  2UUA E;  4ZVI A;  4LFC I;  4OO1 E;  4B3S E;  1UDQ A;  1Y4U A;  4LPF A;  2IER A;  1IBK I;  3QT7 A;  4WUC A;  4OX9 I;  1ZXN A;  4MYT A;  2GS8 A;  2HFS A;  2PO0 A;  4BA2 B;  5C0X A;  2BM0 A;  1B63 A;  4DXL A;  4LF5 E;  2F1D A;  1Z5C A;  4JI5 E;  1D6T A;  5DRQ A;  3P3G A;  2PO1 A;  3Q6N A;  1USU A;  4DR3 I;  1U2R A;  1FWK A;  2HKE A;  3U1Y A;  3QT8 A;  3CDI A;  3PS1 A;  4GKJ E;  4DR1 I;  4LFB E;  5K36 C;  3QT5 A;  4IS9 A;  2R3V A;  1N34 E;  3P3C A;  4DV3 I;  2HHH I;  4K0K E;  4DV6 I;  2F4V E;  4DPX A;  2O1W A;  2UUA I;  4MU3 A;  2O1U A;  4B3S I;  4DR2 E;  4HYM A;  1Z5A A;  4HAC A;  2ZM6 E;  2J7K A;  1S16 A;  2BV3 A;  3L7Z B;  3P06 A;  1VIS A;  1IBM E;  5C0X D;  1ELO A;  4LF5 I;  1KVK A;  4OO1 A;  1NHH A;  4JI5 I;  1PIE A;  4DV5 E;  5DRP A; 
#chains in the Genus database with same CATH homology
 5DNL A;  4LPF A;  4MU3 A;  1RHY A;  4MU0 A;  4MU1 A;  4QNJ A;  5ELW A;  2AE8 A;  4MU4 A;  4GQU A;  2F1D A;  4QNK A;  5DNX A;  5EKW A;  4LOM A;  5EL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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