4MU4A

The form b structure of an e21q catalytic mutant of a. thaliana igpd2 in complex with mn2+ and its substrate, 2r3s-igp, to 1.41 a resolution
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKQTNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 63
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A02
4LPFA 4MU0A 4QNJA 5DNXA 2F1DA 5DNLA 4MU3A 4LOMA 4MU1A 4QNKA 5EL9A 5ELWA 5EKWA 4GQUA 2AE8A 1RHYA 4MU4A
chains in the Genus database with same CATH superfamily
1FWLA 2C38A 2CGEA 3Q6MA 4IS9A 1VI7A 4IFDD 2UXBE 1FKAE 2PNZA 4DU7A 1Z0WA 1XNQE 2C38B 2DEIA 3CDIA 3JAMQ 1FJGE 1MX0A 4MYTA 1EI1A 3T1HE 3T1HI 1N0UA 4DR1E 1PIEA 3V5RA 4DR1I 3M85D 4DR4E 3T1YE 2NN6F 4DPUA 3P06A 2VQFE 2UU9E 4DV6E 2UU9I 4DV6I 4JI0E 5GMEA 1HNXI 3B4TA 3PYDA 4WUBA 4UT4A 4OO1C 4LF7I 4NBQA 5DNLA 1FNMA 4LF6I 1Z5CA 3ZZTA 1XNRE 5K36D 1XNRI 4JI6E 2HKEA 2C37A 4HACA 3P3GA 1N32E 2AE8A 3UHMA 1XMOE 4WUCA 3J81C 2C37B 3B78A 1FWKA 1XMQE 1HR0E 4DR7E 5DRPA 4DR7I 4HACB 1UDNA 4DV1E 2JEBA 4DV1I 2VF3A 5A2QC 2O1UA 4OO1A 4LPFA 4LF5E 2O1TA 1PKPA 3P76A 1UEKA 2UUAE 2JEBB 4JI3I 4OX9E 4DUZE 4OX9I 4DUZI 1Z0VA 3QT6A 4GKKE 2UUBI 4LF4I 1K47A 1NHJA 1I94E 3M7NG 1KKHA 4ED4A 1U2RA 3GMEA 3J7AM 4IZJD 1OYSA 2CVEA 4LF8E 4PRVA 4LF8I 5LL6R 4JG4A 3PYEA 3P3CA 1H7SA 2GS8A 2Z5EA 4DPTA 4JI4E 4JI4I 2O1VA 2CG9A 4OO1F 5C0XD 4NXNE 3HJCA 2IOQA 4LF9E 5EKWA 2A2DA 1KTVA 2V34A 4AIDA 4B3TI 3J80C 1KIJA 2UXDI 4B3MI 4BA2A 4DV4E 4JYAE 2V2VA 3K17A 2NN6D 1P42A 2JEAA 2ZBKB 4BA2B 5IWAE 4MU4A 1BKNA 4LCFA 2HKJA 2JEAB 4JI2E 4JI2I 2BR2B 3HKMA 2Z5CA 4DPYA 1N34I 4FW3A 1R6MA 4DR6E 3U1KA 3HULA 2VQEE 2GQ0A 2VQEI 4EMDA 2BA0D 4DR2I 1IBLE 3WU4A 1HNWE 1UDOA 2HFSA 3PYGA 2Z5CB 4LFAI 5C0XF 3PS2A 4LCGA 2HK2A 4XTJA 2PO1A 1HK7A 1H72C 1ZM9A 3P3EA 4FWDA 2PO1B 1S4EA 4LFCE 2BA1G 4LFCI 4FW4A 2E5LE 1UDSA 5DRRA 2E5LI 4NXMI 4P52A 5A2QQ 2X36A 4MYUA 1Y5YA 4GKJI 5IT9Q 1HNXE 1Y60A 2C39A 1N36I 1D6TA 3ZZUA 4P7AA 3NZKA 4LF7E 5GMDA 2UXCI 4LF6E 3Q6NA 1NHIA 1Z0BA 2C39B 1USVA 2IESA 1ZM3A 4MU0A 4DV5I 4R1FA 4USKA 4K0KI 2HHHI 4M1KA 4OO1D 4JI1I 4AIMA 2Q2EB 4MDTA 4JI7I 1DARA 2VESA 5JEAE 5FWKA 4FN5A 4JI3E 3J80Q 4HXZA 4AQYE 1HNZI 2X7IA 4AQYI 3JAMC 3PS3A 2BM0A 1Z59A 1ZM2A 2UUBE 4LF4E 3GLLA 4ISAA 1MG7A 1YH8A 4X64E 4N3OA 4X64I 4J3DA 4URLA 2WNRA 2PNMA 4DPWA 1ZXMA 1Y4SA 1USUA 3WU3A 3ZKBA 5LMNI 4QNJA 4LFBE 4UTGA 4LFBI 1E3HA 2WNRB 3LTOA 4IFDE 3QT5A 3LNUA 1FI4A 4DR3I 2GO3A 5BR8E 2IERA 4OZEA 5BR8I 4KQVA 4B3TE 4KHPI 4JV5I 4DR5I 1ZXNA 4X62I 2AJ4A 2UXDE 2IOPA 4YHHI 4B3ME 3Q1QA 2LJPA 3M85G 4I3HA 4DUYI 4BA1A 1J5EI 4DV7I 2V2QA 5JEAC 3M6AA 2A2CA 2BR2A 4U3DA 2BV3A 4BA1B 1OYPA 4ZVIA 2ZM6I 1N33E 1N33I 1H73A 4AM3A 3B8HA 4B3SI 1MU5A 4DU8A 1N34E 5K36E 4LOMA 1XXEA 1Y6ZA 4GQUA 4DR2E 2GO4A 4MU1A 3PYFA 4LFAE 5JEAA 4DPXA 4YY3I 1NZ0A 2XEXA 3L7ZB 2JE6A 3WU5A 1VISA 4IFDC 2WP8A 5JEAB 4FW7A 4PRXA 2V2ZA 3J81Q 3M7ND 2CZ9A 4DV2I 3CWVA 5DRQA 4DV0E 1IBKI 4DV0I 2V8PA 2JE6B 2PNLA 2WP8B 4NXME 1B62A 1IBME 3U1YA 2BM1A 4X65I 1IBMI 5DNXA 4GKJE 4IZKA 4FWHA 4X66E 2UXBI 4X66I 1N36E 2R42A 5FLXC 1XNQI 2R3VA 4RPFA 4DV3E 4DV3I 4IZKB 2UXCE 5JEAF 4IFDA 1Z0GA 3KRNA 1FJGI 2OI2A 2PNZB 4Z7CA 3K85A 3F0NA 2ZITA 4IFDB 4DR4I 5K36C 3T1YI 4DV5E 4USMA 1ZM4A 1Z5AA 4FW9A 4U3BA 4K0KE 2HHHE 2VQFI 5C0XE 4JI1E 4JI0I 1R6LA 2HK3A 2F1DA 2PO0A 4JI7E 4HY1A 5ELWA 2HFUA 1ELOA 3GCMA 1E3PA 2WW4A 1RHYA 1WUUA 1RR9A 1KVKA 3D4JA 4JI5E 1NHHA 4JI5I 2O1WA 1EA6A 2O3ZA 2PO0B 1RREA 3ZM7A 4JI6I 3H1CA 1UDQA 4LCHA 5EL9A 1HNZE 2NN6E 1N32I 4IFDF 1XMOI 5K36A 1XMQI 1HR0I 3V2UC 2E1RA 3GONA 1H74A 5K36B 3PRYA 1XHKA 5IT9C 5L3JA 3QT7A 4LF5I 2BA0G 5LMNE 2BA1D 2J7KA 2EFGA 2UUAI 1Z0TA 4HYMA 4OO1B 2Z5BA 4GKKI 2F4VE 4OKGA 2F4VI 4DR3E 3WU6A 2J65A 4FW6A 5DROA 1I94I 1H7UA 5C0XC 4KHPE 4JV5E 4DR5E 2Z5BB 4X62E 3DD6A 1Z0EA 3ZZ0A 4YHHE 5K36F 2JT2A 4DUYE 1J5EE 1PVGA 4MQYA 4DV7E 4IZJA 1Z0CA 1OJ4A 1A6FA 2DEJA 4DXLA 4NXNI 2ZM6E 4LF9I 2NN6C 4B3RE 4IZJB 4B3RI 4B3SE 2UUCE 2UUCI 4Z7YA 3ZKDA 5JEAD 5C0XA 4FW5A 3CDJA 4WUDA 1OYRA 1N0VC 5FLXQ 3K1JA 3LPSA 3OTOE 3OTOI 4DV4I 3L7ZA 4JYAI 1YHCA 1S16A 4JI8E 2PO2A 3PS1A 4JI8I 4FWGA 5C0XB 3B82A 4YY3E 4OO1E 4PU9A 3J7AG 5IWAI 1Y4UA 2PO2B 3QT8A 1QZRA 2NN6A 5LMUE 5LMUI 4DV2E 1Z5BA 1IBKE 4DR6I 4MU3A 4QNKA 2NPFA 1IBLI 1B63A 2NN6B 1HNWI 3H4LA 4X65E
chains in the Genus database with same CATH topology
4LPFA 4MU0A 4QNJA 5DNXA 2F1DA 5DNLA 4MU3A 4LOMA 4MU1A 4QNKA 5EL9A 5ELWA 5EKWA 4GQUA 2AE8A 1RHYA 4MU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LPF A;  4MU0 A;  4QNJ A;  5DNX A;  2F1D A;  5DNL A;  4MU3 A;  4LOM A;  4MU1 A;  4QNK A;  5EL9 A;  5ELW A;  5EKW A;  4GQU A;  2AE8 A;  1RHY A;  4MU4 A; 
#chains in the Genus database with same CATH topology
 1FWL A;  2C38 A;  2CGE A;  3Q6M A;  4IS9 A;  1VI7 A;  4IFD D;  2UXB E;  1FKA E;  2PNZ A;  4DU7 A;  1Z0W A;  1XNQ E;  2C38 B;  2DEI A;  3CDI A;  3JAM Q;  1FJG E;  1MX0 A;  4MYT A;  1EI1 A;  3T1H E;  3T1H I;  1N0U A;  4DR1 E;  1PIE A;  3V5R A;  4DR1 I;  3M85 D;  4DR4 E;  3T1Y E;  2NN6 F;  4DPU A;  3P06 A;  2VQF E;  2UU9 E;  4DV6 E;  2UU9 I;  4DV6 I;  4JI0 E;  5GME A;  1HNX I;  3B4T A;  3PYD A;  4WUB A;  4UT4 A;  4OO1 C;  4LF7 I;  4NBQ A;  5DNL A;  1FNM A;  4LF6 I;  1Z5C A;  3ZZT A;  1XNR E;  5K36 D;  1XNR I;  4JI6 E;  2HKE A;  2C37 A;  4HAC A;  3P3G A;  1N32 E;  2AE8 A;  3UHM A;  1XMO E;  4WUC A;  3J81 C;  2C37 B;  3B78 A;  1FWK A;  1XMQ E;  1HR0 E;  4DR7 E;  5DRP A;  4DR7 I;  4HAC B;  1UDN A;  4DV1 E;  2JEB A;  4DV1 I;  2VF3 A;  5A2Q C;  2O1U A;  4OO1 A;  4LPF A;  4LF5 E;  2O1T A;  1PKP A;  3P76 A;  1UEK A;  2UUA E;  2JEB B;  4JI3 I;  4OX9 E;  4DUZ E;  4OX9 I;  4DUZ I;  1Z0V A;  3QT6 A;  4GKK E;  2UUB I;  4LF4 I;  1K47 A;  1NHJ A;  1I94 E;  3M7N G;  1KKH A;  4ED4 A;  1U2R A;  3GME A;  3J7A M;  4IZJ D;  1OYS A;  2CVE A;  4LF8 E;  4PRV A;  4LF8 I;  5LL6 R;  4JG4 A;  3PYE A;  3P3C A;  1H7S A;  2GS8 A;  2Z5E A;  4DPT A;  4JI4 E;  4JI4 I;  2O1V A;  2CG9 A;  4OO1 F;  5C0X D;  4NXN E;  3HJC A;  2IOQ A;  4LF9 E;  5EKW A;  2A2D A;  1KTV A;  2V34 A;  4AID A;  4B3T I;  3J80 C;  1KIJ A;  2UXD I;  4B3M I;  4BA2 A;  4DV4 E;  4JYA E;  2V2V A;  3K17 A;  2NN6 D;  1P42 A;  2JEA A;  2ZBK B;  4BA2 B;  5IWA E;  4MU4 A;  1BKN A;  4LCF A;  2HKJ A;  2JEA B;  4JI2 E;  4JI2 I;  2BR2 B;  3HKM A;  2Z5C A;  4DPY A;  1N34 I;  4FW3 A;  1R6M A;  4DR6 E;  3U1K A;  3HUL A;  2VQE E;  2GQ0 A;  2VQE I;  4EMD A;  2BA0 D;  4DR2 I;  1IBL E;  3WU4 A;  1HNW E;  1UDO A;  2HFS A;  3PYG A;  2Z5C B;  4LFA I;  5C0X F;  3PS2 A;  4LCG A;  2HK2 A;  4XTJ A;  2PO1 A;  1HK7 A;  1H72 C;  1ZM9 A;  3P3E A;  4FWD A;  2PO1 B;  1S4E A;  4LFC E;  2BA1 G;  4LFC I;  4FW4 A;  2E5L E;  1UDS A;  5DRR A;  2E5L I;  4NXM I;  4P52 A;  5A2Q Q;  2X36 A;  4MYU A;  1Y5Y A;  4GKJ I;  5IT9 Q;  1HNX E;  1Y60 A;  2C39 A;  1N36 I;  1D6T A;  3ZZU A;  4P7A A;  3NZK A;  4LF7 E;  5GMD A;  2UXC I;  4LF6 E;  3Q6N A;  1NHI A;  1Z0B A;  2C39 B;  1USV A;  2IES A;  1ZM3 A;  4MU0 A;  4DV5 I;  4R1F A;  4USK A;  4K0K I;  2HHH I;  4M1K A;  4OO1 D;  4JI1 I;  4AIM A;  2Q2E B;  4MDT A;  4JI7 I;  1DAR A;  2VES A;  5JEA E;  5FWK A;  4FN5 A;  4JI3 E;  3J80 Q;  4HXZ A;  4AQY E;  1HNZ I;  2X7I A;  4AQY I;  3JAM C;  3PS3 A;  2BM0 A;  1Z59 A;  1ZM2 A;  2UUB E;  4LF4 E;  3GLL A;  4ISA A;  1MG7 A;  1YH8 A;  4X64 E;  4N3O A;  4X64 I;  4J3D A;  4URL A;  2WNR A;  2PNM A;  4DPW A;  1ZXM A;  1Y4S A;  1USU A;  3WU3 A;  3ZKB A;  5LMN I;  4QNJ A;  4LFB E;  4UTG A;  4LFB I;  1E3H A;  2WNR B;  3LTO A;  4IFD E;  3QT5 A;  3LNU A;  1FI4 A;  4DR3 I;  2GO3 A;  5BR8 E;  2IER A;  4OZE A;  5BR8 I;  4KQV A;  4B3T E;  4KHP I;  4JV5 I;  4DR5 I;  1ZXN A;  4X62 I;  2AJ4 A;  2UXD E;  2IOP A;  4YHH I;  4B3M E;  3Q1Q A;  2LJP A;  3M85 G;  4I3H A;  4DUY I;  4BA1 A;  1J5E I;  4DV7 I;  2V2Q A;  5JEA C;  3M6A A;  2A2C A;  2BR2 A;  4U3D A;  2BV3 A;  4BA1 B;  1OYP A;  4ZVI A;  2ZM6 I;  1N33 E;  1N33 I;  1H73 A;  4AM3 A;  3B8H A;  4B3S I;  1MU5 A;  4DU8 A;  1N34 E;  5K36 E;  4LOM A;  1XXE A;  1Y6Z A;  4GQU A;  4DR2 E;  2GO4 A;  4MU1 A;  3PYF A;  4LFA E;  5JEA A;  4DPX A;  4YY3 I;  1NZ0 A;  2XEX A;  3L7Z B;  2JE6 A;  3WU5 A;  1VIS A;  4IFD C;  2WP8 A;  5JEA B;  4FW7 A;  4PRX A;  2V2Z A;  3J81 Q;  3M7N D;  2CZ9 A;  4DV2 I;  3CWV A;  5DRQ A;  4DV0 E;  1IBK I;  4DV0 I;  2V8P A;  2JE6 B;  2PNL A;  2WP8 B;  4NXM E;  1B62 A;  1IBM E;  3U1Y A;  2BM1 A;  4X65 I;  1IBM I;  5DNX A;  4GKJ E;  4IZK A;  4FWH A;  4X66 E;  2UXB I;  4X66 I;  1N36 E;  2R42 A;  5FLX C;  1XNQ I;  2R3V A;  4RPF A;  4DV3 E;  4DV3 I;  4IZK B;  2UXC E;  5JEA F;  4IFD A;  1Z0G A;  3KRN A;  1FJG I;  2OI2 A;  2PNZ B;  4Z7C A;  3K85 A;  3F0N A;  2ZIT A;  4IFD B;  4DR4 I;  5K36 C;  3T1Y I;  4DV5 E;  4USM A;  1ZM4 A;  1Z5A A;  4FW9 A;  4U3B A;  4K0K E;  2HHH E;  2VQF I;  5C0X E;  4JI1 E;  4JI0 I;  1R6L A;  2HK3 A;  2F1D A;  2PO0 A;  4JI7 E;  4HY1 A;  5ELW A;  2HFU A;  1ELO A;  3GCM A;  1E3P A;  2WW4 A;  1RHY A;  1WUU A;  1RR9 A;  1KVK A;  3D4J A;  4JI5 E;  1NHH A;  4JI5 I;  2O1W A;  1EA6 A;  2O3Z A;  2PO0 B;  1RRE A;  3ZM7 A;  4JI6 I;  3H1C A;  1UDQ A;  4LCH A;  5EL9 A;  1HNZ E;  2NN6 E;  1N32 I;  4IFD F;  1XMO I;  5K36 A;  1XMQ I;  1HR0 I;  3V2U C;  2E1R A;  3GON A;  1H74 A;  5K36 B;  3PRY A;  1XHK A;  5IT9 C;  5L3J A;  3QT7 A;  4LF5 I;  2BA0 G;  5LMN E;  2BA1 D;  2J7K A;  2EFG A;  2UUA I;  1Z0T A;  4HYM A;  4OO1 B;  2Z5B A;  4GKK I;  2F4V E;  4OKG A;  2F4V I;  4DR3 E;  3WU6 A;  2J65 A;  4FW6 A;  5DRO A;  1I94 I;  1H7U A;  5C0X C;  4KHP E;  4JV5 E;  4DR5 E;  2Z5B B;  4X62 E;  3DD6 A;  1Z0E A;  3ZZ0 A;  4YHH E;  5K36 F;  2JT2 A;  4DUY E;  1J5E E;  1PVG A;  4MQY A;  4DV7 E;  4IZJ A;  1Z0C A;  1OJ4 A;  1A6F A;  2DEJ A;  4DXL A;  4NXN I;  2ZM6 E;  4LF9 I;  2NN6 C;  4B3R E;  4IZJ B;  4B3R I;  4B3S E;  2UUC E;  2UUC I;  4Z7Y A;  3ZKD A;  5JEA D;  5C0X A;  4FW5 A;  3CDJ A;  4WUD A;  1OYR A;  1N0V C;  5FLX Q;  3K1J A;  3LPS A;  3OTO E;  3OTO I;  4DV4 I;  3L7Z A;  4JYA I;  1YHC A;  1S16 A;  4JI8 E;  2PO2 A;  3PS1 A;  4JI8 I;  4FWG A;  5C0X B;  3B82 A;  4YY3 E;  4OO1 E;  4PU9 A;  3J7A G;  5IWA I;  1Y4U A;  2PO2 B;  3QT8 A;  1QZR A;  2NN6 A;  5LMU E;  5LMU I;  4DV2 E;  1Z5B A;  1IBK E;  4DR6 I;  4MU3 A;  4QNK A;  2NPF A;  1IBL I;  1B63 A;  2NN6 B;  1HNW I;  3H4L A;  4X65 E; 
#chains in the Genus database with same CATH homology
 4LPF A;  4MU0 A;  4QNJ A;  5DNX A;  2F1D A;  5DNL A;  4MU3 A;  4LOM A;  4MU1 A;  4QNK A;  5EL9 A;  5ELW A;  5EKW A;  4GQU A;  2AE8 A;  1RHY A;  4MU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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