4MU4A

The form b structure of an e21q catalytic mutant of a. thaliana igpd2 in complex with mn2+ and its substrate, 2r3s-igp, to 1.41 a resolution
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKQTNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 63
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A02
4GQUA 1RHYA 4LOMA 4MU0A 4MU1A 5DNXA 5EKWA 5ELWA 4MU4A 4LPFA 5EL9A 4QNKA 4QNJA 4MU3A 5DNLA 2F1DA 2AE8A
chains in the Genus database with same CATH superfamily
2PO1B 1OYPA 1E3PA 1OJ4A 1U2RA 2BM1A 1N0UA 3M7ND 3HULA 5K36F 3ZZ0A 4JI3E 4K0KE 5FLXC 4X66I 2Z5BA 4LF8I 1NHJA 4LF6I 1ELOA 2Z5EA 4LF6E 4GKJE 1XHKA 4MYTA 4OX9I 4OX9E 4HACB 2F1DA 1Z0VA 4DV0I 4DR5E 4OO1C 5JEAC 2O1VA 1Z0BA 1XNRE 1B62A 5EKWA 3GLLA 2PNLA 4RPFA 1FKAE 1N34E 1NZ0A 4JI7I 1XMOE 4JI1E 2JE6B 4P52A 1XMQE 4OO1B 5JEAB 4GQUA 4JI6I 3KRNA 3T1HE 3PYGA 5IT9Q 4U3BA 2HKEA 2IESA 3CDIA 3OTOE 5DRPA 5GMEA 4LF7E 1H73A 3F0NA 2F4VI 1IBLI 2BA0D 1UDNA 2F4VE 1WUUA 4DV5I 1IBLE 2LJPA 4BA2B 3ZKBA 2Q2EB 5C0XA 4DUYI 1EI1A 3Q6NA 4UTGA 4JI2I 4JYAI 3D4JA 4JYAE 5K36B 3J81C 4URLA 1K47A 2ZM6I 2ZM6E 2JEAB 4DV1I 5K36A 4DV6E 1N0VC 4P7AA 1ZM4A 2UXCI 4LCFA 3P3CA 1XNQI 1FJGI 4X64I 1FJGE 2CG9A 4AM3A 4NXMI 1S4EA 4FWHA 4NXME 4MYUA 4B3TI 1VI7A 4NXNI 3PS1A 3L7ZB 2AJ4A 2C39B 5JEAD 2UXDI 4OKGA 1NHHA 1IBMI 4AQYI 4DUZI 4BA1A 4B3RE 4OZEA 4DR2I 1HR0I 2C39A 2PNMA 3NZKA 1Y4UA 4DR2E 1HR0E 4ED4A 4N3OA 4IFDE 2Z5CB 2BM0A 4DXLA 4B3SE 4DV2E 3J7AM 4DR6I 2V8PA 4DR4I 2PO2B 5EL9A 1Z0EA 1N36I 2PNZA 1H7UA 2UUCI 2E5LI 2BA1D 1S16A 4LFCI 2UUCE 4DV4E 2E5LE 4KHPI 3B4TA 4KHPE 4GKKI 3WU4A 1Z0GA 1PVGA 4JI4I 4LFAE 4MU0A 1Y4SA 2C37A 5BR8E 3V2UC 3PS2A 2IOQA 4PRVA 5LMUI 2HHHI 3P06A 4X66E 4LF8E 2PO1A 1N33I 1Y6ZA 5LL6R 1R6MA 2GQ0A 1RR9A 4QNJA 1RREA 4FW3A 4JI0I 2GS8A 3K17A 4LF9I 4MU1A 2UU9I 1MX0A 1MG7A 4DV0E 2UU9E 2HFSA 1YH8A 2HK3A 1KTVA 1ZM3A 1H7SA 3QT6A 4Z7YA 4HACA 2O1TA 4IFDD 2UUBI 4AIMA 2CGEA 1UEKA 3LPSA 3LTOA 4I3HA 4MU3A 4JI7E 1P42A 4IZJB 1Z59A 4WUCA 1I94I 1Z5CA 2CVEA 2WNRB 4IFDF 2O1UA 4JI6E 2EFGA 2NN6C 2VQFI 1N32I 2VQFE 4AIDA 2E1RA 1Z0TA 3J81Q 4DV7I 1N32E 2JE6A 2WNRA 4OO1A 5JEAA 4Z7CA 4J3DA 4X65I 2HKJA 4MU4A 4DV5E 1Y60A 3M6AA 3B8HA 3GMEA 2BR2B 4PRXA 4U3DA 2UXBI 3PYDA 3GCMA 4DUYE 2NN6B 2A2DA 3P76A 3M85G 4DU8A 4USMA 4JI2E 2WW4A 3P3GA 4BA2A 3QT8A 2BR2A 1HNZI 4UT4A 2NN6E 2J7KA 3B82A 4DR7I 2WP8B 3T1YI 4IZKB 1UDQA 3T1YE 4DV1E 1FI4A 4KQVA 4DPYA 5C0XE 1EA6A 2UXCE 4YY3I 4HYMA 2JEAA 3M85D 4YY3E 1XNQE 1ZXMA 4JG4A 4M1KA 4EMDA 4X64E 4IFDC 5DRRA 1HNWI 1HNWE 4FN5A 4MDTA 1J5EI 5A2QQ 3PRYA 2UUAI 4HXZA 4LFBI 1ZXNA 4B3TE 1HNXI 4NXNE 4IZJD 4IS9A 3P3EA 2UXDE 1Z5BA 4IFDB 5GMDA 2GO4A 1D6TA 2O3ZA 1IBME 3CDJA 4AQYE 1UDSA 3HJCA 1PKPA 4DUZE 3L7ZA 1Z0CA 4JI8I 5A2QC 2AE8A 4JI8E 2C38B 4LCHA 1Z5AA 4LF4I 1VISA 3K1JA 4X62I 4DR6E 5IWAI 4DR4E 5IWAE 2NN6D 4JV5I 2ZBKB 1YHCA 2Z5CA 2OI2A 1N36E 2V2QA 4DR3I 3K85A 5C0XD 4LFCE 4DR3E 1IBKI 2JEBB 2PO2A 4LOMA 5DRQA 4FW6A 2PO0B 1IBKE 2NN6F 4GKKE 4JI4E 3WU6A 3J80Q 1OYSA 3PYEA 3M7NG 5C0XF 1BKNA 5LMUE 2HHHE 4DV3I 1N33E 4DV3E 2A2CA 3GONA 3QT7A 4DPXA 4ZVIA 3WU3A 2IERA 4NBQA 4JI0E 5DNXA 4LF9E 2HK2A 2Z5BB 4B3MI 2BV3A 1USVA 1USUA 3J80C 4B3ME 1Z0WA 3U1KA 4DU7A 4JI3I 2XEXA 3QT5A 4K0KI 1H72C 4WUBA 3ZZTA 3JAMQ 2UUBE 4GKJI 2J65A 3ZZUA 2NPFA 2V34A 3HKMA 4XTJA 1Y5YA 1I94E 1NHIA 2VF3A 4DR5I 2VESA 4LF5I 4LF5E 2HFUA 1XNRI 4DPUA 4IZJA 4DV7E 1ZM2A 3JAMC 5C0XC 1A6FA 2BA0G 4X65E 1N34I 4FW5A 3WU5A 1XMOI 4JI1I 1XMQI 4FW9A 2UXBE 3ZKDA 3T1HI 3U1YA 2O1WA 1HK7A 3OTOI 3CWVA 4DPTA 5C0XB 4LF7I 3DD6A 1HNZE 1OYRA 5K36C 2NN6A 5DROA 1MU5A 2JT2A 2R3VA 5JEAE 4OO1E 1UDOA 2CZ9A 1FWKA 4DR7E 2VQEI 3H1CA 2VQEE 4JI5I 4JI5E 4FWGA 4FWDA 2WP8A 4IZKA 1B63A 2GO3A 4MQYA 5IT9C 5LMNI 5DNLA 5LMNE 2X7IA 1H74A 1J5EE 3UHMA 2UUAE 4LFBE 2DEIA 3LNUA 3V5RA 5L3JA 1HNXE 4DV6I 5K36E 3PS3A 3Q1QA 1KKHA 3Q6MA 4USKA 2IOPA 1FWLA 4LPFA 4QNKA 3H4LA 1PIEA 4WUDA 1ZM9A 1XXEA 5ELWA 4HY1A 4IFDA 4LF4E 3ZM7A 4BA1B 4X62E 1DARA 2C38A 4OO1D 1KIJA 4JV5E 3J7AG 2X36A 3PYFA 4B3RI 2BA1G 4PU9A 5FWKA 3B78A 4DR1I 4FW7A 4DPWA 4DR1E 4OO1F 5JEAF 4B3SI 4DV2I 2PNZB 1RHYA 4R1FA 1E3HA 2R42A 2DEJA 4LCGA 2JEBA 2PO0A 5FLXQ 1QZRA 1KVKA 2C37B 1R6LA 5K36D 4DV4I 4YHHI 2V2VA 4YHHE 4LFAI 2ZITA 2V2ZA 4FW4A 1FNMA 4ISAA 5BR8I
chains in the Genus database with same CATH topology
4GQUA 1RHYA 4LOMA 4MU0A 4MU1A 5DNXA 5EKWA 5ELWA 4MU4A 4LPFA 5EL9A 4QNKA 4QNJA 4MU3A 5DNLA 2F1DA 2AE8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  1RHY A;  4LOM A;  4MU0 A;  4MU1 A;  5DNX A;  5EKW A;  5ELW A;  4MU4 A;  4LPF A;  5EL9 A;  4QNK A;  4QNJ A;  4MU3 A;  5DNL A;  2F1D A;  2AE8 A; 
#chains in the Genus database with same CATH topology
 2PO1 B;  1OYP A;  1E3P A;  1OJ4 A;  1U2R A;  2BM1 A;  1N0U A;  3M7N D;  3HUL A;  5K36 F;  3ZZ0 A;  4JI3 E;  4K0K E;  5FLX C;  4X66 I;  2Z5B A;  4LF8 I;  1NHJ A;  4LF6 I;  1ELO A;  2Z5E A;  4LF6 E;  4GKJ E;  1XHK A;  4MYT A;  4OX9 I;  4OX9 E;  4HAC B;  2F1D A;  1Z0V A;  4DV0 I;  4DR5 E;  4OO1 C;  5JEA C;  2O1V A;  1Z0B A;  1XNR E;  1B62 A;  5EKW A;  3GLL A;  2PNL A;  4RPF A;  1FKA E;  1N34 E;  1NZ0 A;  4JI7 I;  1XMO E;  4JI1 E;  2JE6 B;  4P52 A;  1XMQ E;  4OO1 B;  5JEA B;  4GQU A;  4JI6 I;  3KRN A;  3T1H E;  3PYG A;  5IT9 Q;  4U3B A;  2HKE A;  2IES A;  3CDI A;  3OTO E;  5DRP A;  5GME A;  4LF7 E;  1H73 A;  3F0N A;  2F4V I;  1IBL I;  2BA0 D;  1UDN A;  2F4V E;  1WUU A;  4DV5 I;  1IBL E;  2LJP A;  4BA2 B;  3ZKB A;  2Q2E B;  5C0X A;  4DUY I;  1EI1 A;  3Q6N A;  4UTG A;  4JI2 I;  4JYA I;  3D4J A;  4JYA E;  5K36 B;  3J81 C;  4URL A;  1K47 A;  2ZM6 I;  2ZM6 E;  2JEA B;  4DV1 I;  5K36 A;  4DV6 E;  1N0V C;  4P7A A;  1ZM4 A;  2UXC I;  4LCF A;  3P3C A;  1XNQ I;  1FJG I;  4X64 I;  1FJG E;  2CG9 A;  4AM3 A;  4NXM I;  1S4E A;  4FWH A;  4NXM E;  4MYU A;  4B3T I;  1VI7 A;  4NXN I;  3PS1 A;  3L7Z B;  2AJ4 A;  2C39 B;  5JEA D;  2UXD I;  4OKG A;  1NHH A;  1IBM I;  4AQY I;  4DUZ I;  4BA1 A;  4B3R E;  4OZE A;  4DR2 I;  1HR0 I;  2C39 A;  2PNM A;  3NZK A;  1Y4U A;  4DR2 E;  1HR0 E;  4ED4 A;  4N3O A;  4IFD E;  2Z5C B;  2BM0 A;  4DXL A;  4B3S E;  4DV2 E;  3J7A M;  4DR6 I;  2V8P A;  4DR4 I;  2PO2 B;  5EL9 A;  1Z0E A;  1N36 I;  2PNZ A;  1H7U A;  2UUC I;  2E5L I;  2BA1 D;  1S16 A;  4LFC I;  2UUC E;  4DV4 E;  2E5L E;  4KHP I;  3B4T A;  4KHP E;  4GKK I;  3WU4 A;  1Z0G A;  1PVG A;  4JI4 I;  4LFA E;  4MU0 A;  1Y4S A;  2C37 A;  5BR8 E;  3V2U C;  3PS2 A;  2IOQ A;  4PRV A;  5LMU I;  2HHH I;  3P06 A;  4X66 E;  4LF8 E;  2PO1 A;  1N33 I;  1Y6Z A;  5LL6 R;  1R6M A;  2GQ0 A;  1RR9 A;  4QNJ A;  1RRE A;  4FW3 A;  4JI0 I;  2GS8 A;  3K17 A;  4LF9 I;  4MU1 A;  2UU9 I;  1MX0 A;  1MG7 A;  4DV0 E;  2UU9 E;  2HFS A;  1YH8 A;  2HK3 A;  1KTV A;  1ZM3 A;  1H7S A;  3QT6 A;  4Z7Y A;  4HAC A;  2O1T A;  4IFD D;  2UUB I;  4AIM A;  2CGE A;  1UEK A;  3LPS A;  3LTO A;  4I3H A;  4MU3 A;  4JI7 E;  1P42 A;  4IZJ B;  1Z59 A;  4WUC A;  1I94 I;  1Z5C A;  2CVE A;  2WNR B;  4IFD F;  2O1U A;  4JI6 E;  2EFG A;  2NN6 C;  2VQF I;  1N32 I;  2VQF E;  4AID A;  2E1R A;  1Z0T A;  3J81 Q;  4DV7 I;  1N32 E;  2JE6 A;  2WNR A;  4OO1 A;  5JEA A;  4Z7C A;  4J3D A;  4X65 I;  2HKJ A;  4MU4 A;  4DV5 E;  1Y60 A;  3M6A A;  3B8H A;  3GME A;  2BR2 B;  4PRX A;  4U3D A;  2UXB I;  3PYD A;  3GCM A;  4DUY E;  2NN6 B;  2A2D A;  3P76 A;  3M85 G;  4DU8 A;  4USM A;  4JI2 E;  2WW4 A;  3P3G A;  4BA2 A;  3QT8 A;  2BR2 A;  1HNZ I;  4UT4 A;  2NN6 E;  2J7K A;  3B82 A;  4DR7 I;  2WP8 B;  3T1Y I;  4IZK B;  1UDQ A;  3T1Y E;  4DV1 E;  1FI4 A;  4KQV A;  4DPY A;  5C0X E;  1EA6 A;  2UXC E;  4YY3 I;  4HYM A;  2JEA A;  3M85 D;  4YY3 E;  1XNQ E;  1ZXM A;  4JG4 A;  4M1K A;  4EMD A;  4X64 E;  4IFD C;  5DRR A;  1HNW I;  1HNW E;  4FN5 A;  4MDT A;  1J5E I;  5A2Q Q;  3PRY A;  2UUA I;  4HXZ A;  4LFB I;  1ZXN A;  4B3T E;  1HNX I;  4NXN E;  4IZJ D;  4IS9 A;  3P3E A;  2UXD E;  1Z5B A;  4IFD B;  5GMD A;  2GO4 A;  1D6T A;  2O3Z A;  1IBM E;  3CDJ A;  4AQY E;  1UDS A;  3HJC A;  1PKP A;  4DUZ E;  3L7Z A;  1Z0C A;  4JI8 I;  5A2Q C;  2AE8 A;  4JI8 E;  2C38 B;  4LCH A;  1Z5A A;  4LF4 I;  1VIS A;  3K1J A;  4X62 I;  4DR6 E;  5IWA I;  4DR4 E;  5IWA E;  2NN6 D;  4JV5 I;  2ZBK B;  1YHC A;  2Z5C A;  2OI2 A;  1N36 E;  2V2Q A;  4DR3 I;  3K85 A;  5C0X D;  4LFC E;  4DR3 E;  1IBK I;  2JEB B;  2PO2 A;  4LOM A;  5DRQ A;  4FW6 A;  2PO0 B;  1IBK E;  2NN6 F;  4GKK E;  4JI4 E;  3WU6 A;  3J80 Q;  1OYS A;  3PYE A;  3M7N G;  5C0X F;  1BKN A;  5LMU E;  2HHH E;  4DV3 I;  1N33 E;  4DV3 E;  2A2C A;  3GON A;  3QT7 A;  4DPX A;  4ZVI A;  3WU3 A;  2IER A;  4NBQ A;  4JI0 E;  5DNX A;  4LF9 E;  2HK2 A;  2Z5B B;  4B3M I;  2BV3 A;  1USV A;  1USU A;  3J80 C;  4B3M E;  1Z0W A;  3U1K A;  4DU7 A;  4JI3 I;  2XEX A;  3QT5 A;  4K0K I;  1H72 C;  4WUB A;  3ZZT A;  3JAM Q;  2UUB E;  4GKJ I;  2J65 A;  3ZZU A;  2NPF A;  2V34 A;  3HKM A;  4XTJ A;  1Y5Y A;  1I94 E;  1NHI A;  2VF3 A;  4DR5 I;  2VES A;  4LF5 I;  4LF5 E;  2HFU A;  1XNR I;  4DPU A;  4IZJ A;  4DV7 E;  1ZM2 A;  3JAM C;  5C0X C;  1A6F A;  2BA0 G;  4X65 E;  1N34 I;  4FW5 A;  3WU5 A;  1XMO I;  4JI1 I;  1XMQ I;  4FW9 A;  2UXB E;  3ZKD A;  3T1H I;  3U1Y A;  2O1W A;  1HK7 A;  3OTO I;  3CWV A;  4DPT A;  5C0X B;  4LF7 I;  3DD6 A;  1HNZ E;  1OYR A;  5K36 C;  2NN6 A;  5DRO A;  1MU5 A;  2JT2 A;  2R3V A;  5JEA E;  4OO1 E;  1UDO A;  2CZ9 A;  1FWK A;  4DR7 E;  2VQE I;  3H1C A;  2VQE E;  4JI5 I;  4JI5 E;  4FWG A;  4FWD A;  2WP8 A;  4IZK A;  1B63 A;  2GO3 A;  4MQY A;  5IT9 C;  5LMN I;  5DNL A;  5LMN E;  2X7I A;  1H74 A;  1J5E E;  3UHM A;  2UUA E;  4LFB E;  2DEI A;  3LNU A;  3V5R A;  5L3J A;  1HNX E;  4DV6 I;  5K36 E;  3PS3 A;  3Q1Q A;  1KKH A;  3Q6M A;  4USK A;  2IOP A;  1FWL A;  4LPF A;  4QNK A;  3H4L A;  1PIE A;  4WUD A;  1ZM9 A;  1XXE A;  5ELW A;  4HY1 A;  4IFD A;  4LF4 E;  3ZM7 A;  4BA1 B;  4X62 E;  1DAR A;  2C38 A;  4OO1 D;  1KIJ A;  4JV5 E;  3J7A G;  2X36 A;  3PYF A;  4B3R I;  2BA1 G;  4PU9 A;  5FWK A;  3B78 A;  4DR1 I;  4FW7 A;  4DPW A;  4DR1 E;  4OO1 F;  5JEA F;  4B3S I;  4DV2 I;  2PNZ B;  1RHY A;  4R1F A;  1E3H A;  2R42 A;  2DEJ A;  4LCG A;  2JEB A;  2PO0 A;  5FLX Q;  1QZR A;  1KVK A;  2C37 B;  1R6L A;  5K36 D;  4DV4 I;  4YHH I;  2V2V A;  4YHH E;  4LFA I;  2ZIT A;  2V2Z A;  4FW4 A;  1FNM A;  4ISA A;  5BR8 I; 
#chains in the Genus database with same CATH homology
 4GQU A;  1RHY A;  4LOM A;  4MU0 A;  4MU1 A;  5DNX A;  5EKW A;  5ELW A;  4MU4 A;  4LPF A;  5EL9 A;  4QNK A;  4QNJ A;  4MU3 A;  5DNL A;  2F1D A;  2AE8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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