4MU4A

The form b structure of an e21q catalytic mutant of a. thaliana igpd2 in complex with mn2+ and its substrate, 2r3s-igp, to 1.41 a resolution
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
199
structure length
199
Chain Sequence
b'SARIGEVKRETKQTNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
molecule tags Lyase
source organism Arabidopsis thaliana
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
total genus 63
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A02
5DNXA 5DNLA 4LPFA 1RHYA 5EKWA 4MU3A 4QNKA 4QNJA 2AE8A 4GQUA 4MU4A 5EL9A 2F1DA 5ELWA 4MU1A 4MU0A 4LOMA
chains in the Genus database with same CATH superfamily
2BA0D 2UXCE 1HNWE 2NN6C 4DU8A 2UXBE 1NHIA 2IERA 4LPFA 3JAMC 2LJPA 1ELOA 3Q6NA 2F1DA 4JV5E 1XNRI 2VQFI 3PS3A 2PO2A 1FWKA 2JT2A 1MU5A 5K36B 4MU0A 4JI2I 2JEAB 4AQYE 5IT9C 2DEJA 1XMOI 4N3OA 4LF4I 3PYFA 1IBME 4USMA 3PYDA 1Z0VA 2UUAI 1FJGI 4JI6E 4B3TI 1FNMA 2GO4A 1HNXE 2O1WA 1Z0EA 4WUBA 4JI3E 5FWKA 1UEKA 2V2QA 3B8HA 1N0UA 4IFDB 3LTOA 2PNZA 1MX0A 5JEAF 2GS8A 4OO1F 2CGEA 4GQUA 2PNMA 4DV3E 4WUCA 4ED4A 1VISA 3M6AA 5DRPA 3P3EA 1N0VC 4X65I 1R6MA 1J5EE 3P3GA 4BA2B 2HKJA 4DR6I 1NZ0A 4MYTA 4K0KI 3B82A 4JI0I 2E5LI 3J80C 4DR4E 1HNWI 2PNLA 2O1VA 2HFUA 4ZVIA 4B3SI 4OX9E 2Z5BB 3T1YI 3H1CA 1KIJA 5JEAC 3QT8A 4X64I 2GQ0A 4LF8E 4LFBE 1XMQI 4DV0I 4DPXA 3U1KA 3B78A 4LF4E 3QT5A 4IZJD 3ZZ0A 1H74A 1DARA 4KHPE 1Z59A 3KRNA 2UXDI 2ZM6I 4DV0E 4FW5A 3GMEA 1XNQE 2IOPA 3UHMA 4XTJA 4JYAE 2NPFA 4DV4E 1E3HA 4LCGA 4OO1E 4MU1A 4HXZA 3HULA 2Z5EA 2WP8B 5C0XC 4DV5I 1I94I 5K36F 2UXCI 1ZM4A 3PRYA 5BR8I 4JI4E 2IOQA 4OO1A 2VQEE 1IBLI 2WP8A 4LF6I 1ZM3A 2HKEA 3J7AG 1HR0E 1H7UA 5EL9A 2WNRB 5LL6R 1IBMI 1KTVA 1EA6A 4B3RI 1J5EI 4LFCE 2UUBI 1N36E 2BA1G 4DUZI 4LFAI 4LCFA 4USKA 2JEBA 4LF5E 4LCHA 4IZKB 1FJGE 2UUAE 1Z0GA 1XXEA 4YY3I 2UU9I 2UUCE 4LF9I 3J81C 4JI6I 1BKNA 5C0XD 5GMEA 2O1UA 2CVEA 4BA2A 4GKJE 1OJ4A 4DV2E 4B3MI 1ZXMA 5A2QQ 4MYUA 3CDIA 2UUCI 5IWAE 1XNQI 1HNZE 4MQYA 2BV3A 1N34E 1N33E 1IBKE 2BA1D 2Z5CA 4OX9I 3WU4A 4DV1E 1RR9A 3H4LA 5FLXC 2BR2B 2E5LE 4QNKA 4LF8I 4JV5I 3JAMQ 3Q1QA 4JI7E 3P76A 3K85A 4LF6E 1U2RA 3T1YE 2CG9A 4URLA 4B3RE 4UT4A 4DR3I 4JI1E 1HR0I 3U1YA 1Z5AA 1MG7A 2UUBE 5JEAD 3GCMA 4OO1B 4AIMA 2NN6A 4LF9E 2XEXA 2EFGA 5JEAA 3P3CA 4AQYI 2JEAA 4YY3E 5DNXA 4X66I 2PO2B 4BA1B 2C39B 5K36E 3PS1A 4DPWA 4LOMA 1Z0TA 1K47A 5JEAE 4DV4I 4FW3A 4B3TE 1IBKI 4DV3I 2VESA 4HACA 4DR1I 4DV2I 4JI3I 2PNZB 4PRVA 2C37A 4MU4A 2PO0B 1S16A 2HK2A 1KKHA 4DV7E 5K36D 4RPFA 2WNRA 1N33I 1E3PA 2X36A 3F0NA 1H73A 5K36C 1UDOA 4AIDA 2HK3A 3T1HI 1XMOE 4FWGA 2J65A 4JI4I 4OO1C 1Y5YA 4LF5I 2IESA 1ZM9A 4NXNE 4Z7CA 1FWLA 4JI0E 1XMQE 4LFBI 3K17A 1P42A 4LF7I 5LMUI 1HK7A 3M85D 3HJCA 3OTOI 2Q2EB 1N32I 2ZITA 4OKGA 5C0XF 5IT9Q 4DPYA 4X66E 3CDJA 2C37B 2V34A 3QT7A 2GO3A 3Q6MA 5LMNI 1KVKA 2BR2A 4FW9A 1Y4SA 4DV5E 1I94E 5EKWA 2AJ4A 2Z5BA 4DV6I 4KQVA 4DV6E 4DUYE 4DR2I 3M7ND 3K1JA 3ZKDA 4NXME 4X62E 2J7KA 5ELWA 2NN6F 2JE6B 5JEAB 2JE6A 4OO1D 1FI4A 1RHYA 5K36A 3V2UC 2NN6B 4DUYI 4DR2E 1D6TA 2V8PA 4DV7I 4GKKI 4YHHI 4UTGA 1Z0BA 4FWHA 3ZZUA 3GONA 4JI1I 1S4EA 1XHKA 2A2CA 5DROA 1OYPA 4IZKA 4LF7E 4DPUA 4YHHE 3PYEA 2BA0G 4B3ME 4DR7E 3J80Q 4IFDA 2C38A 4NXNI 4DR5E 2DEIA 3M7NG 4WUDA 3PS2A 1HNXI 4U3BA 2Z5CB 4DXLA 4HACB 3L7ZA 4MU3A 1NHJA 1WUUA 5LMUE 2ZBKB 1UDQA 2PO1B 5DNLA 4ISAA 3LNUA 3J7AM 1UDNA 2ZM6E 4Z7YA 2O3ZA 5C0XA 4IFDC 4DR6E 4NBQA 4J3DA 1Z5BA 5A2QC 2F4VI 4IS9A 1Y4UA 2VF3A 3B4TA 5L3JA 2F4VE 1B62A 4JI7I 4IFDD 4NXMI 4PU9A 1PVGA 2BM1A 1B63A 4DR1E 2HFSA 2UXBI 3DD6A 2WW4A 4GKKE 1YH8A 4PRXA 4LFAE 3ZKBA 2VQEI 3T1HE 4DR4I 1IBLE 2PO0A 2HHHI 4R1FA 4IFDE 2HHHE 4JG4A 2UXDE 4JI8E 3WU3A 3D4JA 2BM0A 1UDSA 4DR7I 4M1KA 4B3SE 2VQFE 2V2ZA 4MDTA 4JYAI 4EMDA 2CZ9A 2C39A 5GMDA 4DR3E 1PIEA 4BA1A 3LPSA 3OTOE 4X64E 4FW6A 4OZEA 3GLLA 1FKAE 4QNJA 2X7IA 4KHPI 4AM3A 4DR5I 4HYMA 1USUA 2V2VA 1N32E 1VI7A 5DRQA 2NN6E 4DV1I 2R3VA 2UU9E 1ZXNA 1Z5CA 3P06A 1ZM2A 1QZRA 1HNZI 4JI5I 3V5RA 1N34I 3QT6A 5IWAI 5DRRA 4JI5E 5BR8E 2JEBB 3WU5A 4X65E 4DPTA 3HKMA 1Z0WA 3L7ZB 4GKJI 1R6LA 4P52A 3M85G 4IZJA 4IZJB 4LFCI 2C38B 3CWVA 2NN6D 4FN5A 2R42A 4IFDF 3WU6A 4K0KE 2AE8A 3PYGA 1H7SA 5FLXQ 4X62I 1YHCA 4I3HA 3ZZTA 1EI1A 4JI2E 1Y60A 1RREA 1OYSA 1N36I 4JI8I 1H72C 4DUZE 1XNRE 5C0XE 3ZM7A 4HY1A 1A6FA 2A2DA 4P7AA 5LMNE 1USVA 4FWDA 2O1TA 5C0XB 2OI2A 2E1RA 4FW4A 2PO1A 3NZKA 4FW7A 4DU7A 3J81Q 1OYRA 1Y6ZA 1Z0CA 4U3DA 1NHHA 1PKPA
chains in the Genus database with same CATH topology
5DNXA 5DNLA 4LPFA 1RHYA 5EKWA 4MU3A 4QNKA 4QNJA 2AE8A 4GQUA 4MU4A 5EL9A 2F1DA 5ELWA 4MU1A 4MU0A 4LOMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DNX A;  5DNL A;  4LPF A;  1RHY A;  5EKW A;  4MU3 A;  4QNK A;  4QNJ A;  2AE8 A;  4GQU A;  4MU4 A;  5EL9 A;  2F1D A;  5ELW A;  4MU1 A;  4MU0 A;  4LOM A; 
#chains in the Genus database with same CATH topology
 2BA0 D;  2UXC E;  1HNW E;  2NN6 C;  4DU8 A;  2UXB E;  1NHI A;  2IER A;  4LPF A;  3JAM C;  2LJP A;  1ELO A;  3Q6N A;  2F1D A;  4JV5 E;  1XNR I;  2VQF I;  3PS3 A;  2PO2 A;  1FWK A;  2JT2 A;  1MU5 A;  5K36 B;  4MU0 A;  4JI2 I;  2JEA B;  4AQY E;  5IT9 C;  2DEJ A;  1XMO I;  4N3O A;  4LF4 I;  3PYF A;  1IBM E;  4USM A;  3PYD A;  1Z0V A;  2UUA I;  1FJG I;  4JI6 E;  4B3T I;  1FNM A;  2GO4 A;  1HNX E;  2O1W A;  1Z0E A;  4WUB A;  4JI3 E;  5FWK A;  1UEK A;  2V2Q A;  3B8H A;  1N0U A;  4IFD B;  3LTO A;  2PNZ A;  1MX0 A;  5JEA F;  2GS8 A;  4OO1 F;  2CGE A;  4GQU A;  2PNM A;  4DV3 E;  4WUC A;  4ED4 A;  1VIS A;  3M6A A;  5DRP A;  3P3E A;  1N0V C;  4X65 I;  1R6M A;  1J5E E;  3P3G A;  4BA2 B;  2HKJ A;  4DR6 I;  1NZ0 A;  4MYT A;  4K0K I;  3B82 A;  4JI0 I;  2E5L I;  3J80 C;  4DR4 E;  1HNW I;  2PNL A;  2O1V A;  2HFU A;  4ZVI A;  4B3S I;  4OX9 E;  2Z5B B;  3T1Y I;  3H1C A;  1KIJ A;  5JEA C;  3QT8 A;  4X64 I;  2GQ0 A;  4LF8 E;  4LFB E;  1XMQ I;  4DV0 I;  4DPX A;  3U1K A;  3B78 A;  4LF4 E;  3QT5 A;  4IZJ D;  3ZZ0 A;  1H74 A;  1DAR A;  4KHP E;  1Z59 A;  3KRN A;  2UXD I;  2ZM6 I;  4DV0 E;  4FW5 A;  3GME A;  1XNQ E;  2IOP A;  3UHM A;  4XTJ A;  4JYA E;  2NPF A;  4DV4 E;  1E3H A;  4LCG A;  4OO1 E;  4MU1 A;  4HXZ A;  3HUL A;  2Z5E A;  2WP8 B;  5C0X C;  4DV5 I;  1I94 I;  5K36 F;  2UXC I;  1ZM4 A;  3PRY A;  5BR8 I;  4JI4 E;  2IOQ A;  4OO1 A;  2VQE E;  1IBL I;  2WP8 A;  4LF6 I;  1ZM3 A;  2HKE A;  3J7A G;  1HR0 E;  1H7U A;  5EL9 A;  2WNR B;  5LL6 R;  1IBM I;  1KTV A;  1EA6 A;  4B3R I;  1J5E I;  4LFC E;  2UUB I;  1N36 E;  2BA1 G;  4DUZ I;  4LFA I;  4LCF A;  4USK A;  2JEB A;  4LF5 E;  4LCH A;  4IZK B;  1FJG E;  2UUA E;  1Z0G A;  1XXE A;  4YY3 I;  2UU9 I;  2UUC E;  4LF9 I;  3J81 C;  4JI6 I;  1BKN A;  5C0X D;  5GME A;  2O1U A;  2CVE A;  4BA2 A;  4GKJ E;  1OJ4 A;  4DV2 E;  4B3M I;  1ZXM A;  5A2Q Q;  4MYU A;  3CDI A;  2UUC I;  5IWA E;  1XNQ I;  1HNZ E;  4MQY A;  2BV3 A;  1N34 E;  1N33 E;  1IBK E;  2BA1 D;  2Z5C A;  4OX9 I;  3WU4 A;  4DV1 E;  1RR9 A;  3H4L A;  5FLX C;  2BR2 B;  2E5L E;  4QNK A;  4LF8 I;  4JV5 I;  3JAM Q;  3Q1Q A;  4JI7 E;  3P76 A;  3K85 A;  4LF6 E;  1U2R A;  3T1Y E;  2CG9 A;  4URL A;  4B3R E;  4UT4 A;  4DR3 I;  4JI1 E;  1HR0 I;  3U1Y A;  1Z5A A;  1MG7 A;  2UUB E;  5JEA D;  3GCM A;  4OO1 B;  4AIM A;  2NN6 A;  4LF9 E;  2XEX A;  2EFG A;  5JEA A;  3P3C A;  4AQY I;  2JEA A;  4YY3 E;  5DNX A;  4X66 I;  2PO2 B;  4BA1 B;  2C39 B;  5K36 E;  3PS1 A;  4DPW A;  4LOM A;  1Z0T A;  1K47 A;  5JEA E;  4DV4 I;  4FW3 A;  4B3T E;  1IBK I;  4DV3 I;  2VES A;  4HAC A;  4DR1 I;  4DV2 I;  4JI3 I;  2PNZ B;  4PRV A;  2C37 A;  4MU4 A;  2PO0 B;  1S16 A;  2HK2 A;  1KKH A;  4DV7 E;  5K36 D;  4RPF A;  2WNR A;  1N33 I;  1E3P A;  2X36 A;  3F0N A;  1H73 A;  5K36 C;  1UDO A;  4AID A;  2HK3 A;  3T1H I;  1XMO E;  4FWG A;  2J65 A;  4JI4 I;  4OO1 C;  1Y5Y A;  4LF5 I;  2IES A;  1ZM9 A;  4NXN E;  4Z7C A;  1FWL A;  4JI0 E;  1XMQ E;  4LFB I;  3K17 A;  1P42 A;  4LF7 I;  5LMU I;  1HK7 A;  3M85 D;  3HJC A;  3OTO I;  2Q2E B;  1N32 I;  2ZIT A;  4OKG A;  5C0X F;  5IT9 Q;  4DPY A;  4X66 E;  3CDJ A;  2C37 B;  2V34 A;  3QT7 A;  2GO3 A;  3Q6M A;  5LMN I;  1KVK A;  2BR2 A;  4FW9 A;  1Y4S A;  4DV5 E;  1I94 E;  5EKW A;  2AJ4 A;  2Z5B A;  4DV6 I;  4KQV A;  4DV6 E;  4DUY E;  4DR2 I;  3M7N D;  3K1J A;  3ZKD A;  4NXM E;  4X62 E;  2J7K A;  5ELW A;  2NN6 F;  2JE6 B;  5JEA B;  2JE6 A;  4OO1 D;  1FI4 A;  1RHY A;  5K36 A;  3V2U C;  2NN6 B;  4DUY I;  4DR2 E;  1D6T A;  2V8P A;  4DV7 I;  4GKK I;  4YHH I;  4UTG A;  1Z0B A;  4FWH A;  3ZZU A;  3GON A;  4JI1 I;  1S4E A;  1XHK A;  2A2C A;  5DRO A;  1OYP A;  4IZK A;  4LF7 E;  4DPU A;  4YHH E;  3PYE A;  2BA0 G;  4B3M E;  4DR7 E;  3J80 Q;  4IFD A;  2C38 A;  4NXN I;  4DR5 E;  2DEI A;  3M7N G;  4WUD A;  3PS2 A;  1HNX I;  4U3B A;  2Z5C B;  4DXL A;  4HAC B;  3L7Z A;  4MU3 A;  1NHJ A;  1WUU A;  5LMU E;  2ZBK B;  1UDQ A;  2PO1 B;  5DNL A;  4ISA A;  3LNU A;  3J7A M;  1UDN A;  2ZM6 E;  4Z7Y A;  2O3Z A;  5C0X A;  4IFD C;  4DR6 E;  4NBQ A;  4J3D A;  1Z5B A;  5A2Q C;  2F4V I;  4IS9 A;  1Y4U A;  2VF3 A;  3B4T A;  5L3J A;  2F4V E;  1B62 A;  4JI7 I;  4IFD D;  4NXM I;  4PU9 A;  1PVG A;  2BM1 A;  1B63 A;  4DR1 E;  2HFS A;  2UXB I;  3DD6 A;  2WW4 A;  4GKK E;  1YH8 A;  4PRX A;  4LFA E;  3ZKB A;  2VQE I;  3T1H E;  4DR4 I;  1IBL E;  2PO0 A;  2HHH I;  4R1F A;  4IFD E;  2HHH E;  4JG4 A;  2UXD E;  4JI8 E;  3WU3 A;  3D4J A;  2BM0 A;  1UDS A;  4DR7 I;  4M1K A;  4B3S E;  2VQF E;  2V2Z A;  4MDT A;  4JYA I;  4EMD A;  2CZ9 A;  2C39 A;  5GMD A;  4DR3 E;  1PIE A;  4BA1 A;  3LPS A;  3OTO E;  4X64 E;  4FW6 A;  4OZE A;  3GLL A;  1FKA E;  4QNJ A;  2X7I A;  4KHP I;  4AM3 A;  4DR5 I;  4HYM A;  1USU A;  2V2V A;  1N32 E;  1VI7 A;  5DRQ A;  2NN6 E;  4DV1 I;  2R3V A;  2UU9 E;  1ZXN A;  1Z5C A;  3P06 A;  1ZM2 A;  1QZR A;  1HNZ I;  4JI5 I;  3V5R A;  1N34 I;  3QT6 A;  5IWA I;  5DRR A;  4JI5 E;  5BR8 E;  2JEB B;  3WU5 A;  4X65 E;  4DPT A;  3HKM A;  1Z0W A;  3L7Z B;  4GKJ I;  1R6L A;  4P52 A;  3M85 G;  4IZJ A;  4IZJ B;  4LFC I;  2C38 B;  3CWV A;  2NN6 D;  4FN5 A;  2R42 A;  4IFD F;  3WU6 A;  4K0K E;  2AE8 A;  3PYG A;  1H7S A;  5FLX Q;  4X62 I;  1YHC A;  4I3H A;  3ZZT A;  1EI1 A;  4JI2 E;  1Y60 A;  1RRE A;  1OYS A;  1N36 I;  4JI8 I;  1H72 C;  4DUZ E;  1XNR E;  5C0X E;  3ZM7 A;  4HY1 A;  1A6F A;  2A2D A;  4P7A A;  5LMN E;  1USV A;  4FWD A;  2O1T A;  5C0X B;  2OI2 A;  2E1R A;  4FW4 A;  2PO1 A;  3NZK A;  4FW7 A;  4DU7 A;  3J81 Q;  1OYR A;  1Y6Z A;  1Z0C A;  4U3D A;  1NHH A;  1PKP A; 
#chains in the Genus database with same CATH homology
 5DNX A;  5DNL A;  4LPF A;  1RHY A;  5EKW A;  4MU3 A;  4QNK A;  4QNJ A;  2AE8 A;  4GQU A;  4MU4 A;  5EL9 A;  2F1D A;  5ELW A;  4MU1 A;  4MU0 A;  4LOM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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