4MU1A

The structure of wt a. thaliana igpd2 in complex with mn2+, imidazole, and sulfate at 1.5 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
185
structure length
184
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 54
structure length 184
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A02
4QNKA 4MU0A 5EKWA 4LPFA 1RHYA 2F1DA 4MU4A 4QNJA 5ELWA 2AE8A 5EL9A 5DNXA 4LOMA 4MU3A 5DNLA 4GQUA 4MU1A
chains in the Genus database with same CATH superfamily
2PO2B 4JG4A 3GCMA 2AE8A 4ISAA 4B3MI 4JV5I 4JYAE 4DR7E 4OO1D 4UTGA 4ED4A 4LF8I 4DV0E 4GKJI 5FLXQ 1QZRA 1D6TA 4Z7YA 2JT2A 4DV7E 2ZM6E 1Z0TA 3U1YA 2GS8A 3L7ZA 1UDSA 3PS3A 2C39A 5LMUI 2HHHE 4B3SE 4DU8A 5EKWA 2VQEI 1Z0CA 4B3RE 4JI8E 2NN6B 5DRPA 4MQYA 3J80C 4JI7I 4IFDB 4OO1A 4ZVIA 2BV3A 1YHCA 2JEAB 4AM3A 2AJ4A 3T1HI 1IBKE 3T1YI 1NHHA 3JAMC 2BA1G 1EA6A 3J80Q 4AIDA 1R6LA 4PU9A 1RREA 2CVEA 4DR4E 5ELWA 1PVGA 4URLA 2O1WA 1Y60A 5DNLA 3U1KA 4DUZE 2HK3A 3JAMQ 2F1DA 3K85A 5IWAI 4LFAE 4KQVA 2BM0A 4LFBI 5A2QC 4JI5E 4NXME 4QNJA 4PRXA 4JV5E 4OO1E 4LF8E 4GKJE 4DR7I 3NZKA 5GMDA 3OTOI 4FW9A 5A2QQ 2CGEA 3B8HA 2BA0D 2O1VA 1UDNA 4DV4I 2JEBB 2ZITA 1N0UA 1XMQE 2HFUA 4DV7I 1XNRI 2OI2A 4JI6I 4DV2I 2WP8A 4X64E 2UXCE 3P3EA 4WUDA 2VQEE 1RHYA 3ZM7A 3PYDA 5FWKA 1Y5YA 1ZM9A 4LCGA 4USMA 2V2QA 2E1RA 3M6AA 2UUCI 2DEIA 3K17A 4JI7E 5C0XD 3M85D 1MG7A 4JI1I 4NBQA 3L7ZB 3T1HE 3PS2A 1UEKA 2C39B 3T1YE 1N0VC 1Y4SA 2R42A 1N34I 1H7UA 4DU7A 1FJGI 1IBKI 5JEAD 1YH8A 1H7SA 3J81C 5LMNE 4LCHA 2F4VI 1UDOA 4DUYE 4JI4I 3ZKDA 4IFDE 4DR4I 4LF4I 4OZEA 5IWAE 4OX9E 4OO1B 4DPUA 4PRVA 2VESA 3J81Q 4NXNI 1B63A 4LFBE 1J5EI 2UUBE 4JI2I 5C0XA 2J7KA 4P7AA 1OJ4A 4U3BA 1HNZI 5EL9A 2CZ9A 5JEAA 3OTOE 2WW4A 5JEAF 4FWHA 4LOMA 4DV4E 4JI0E 4DR6E 1XNRE 4JI6E 4DV2E 2Z5EA 2C37B 4MU3A 1XMQI 1U2RA 2BA1D 2A2CA 4X64I 2UXCI 1NZ0A 4FW7A 2C38A 2GO3A 3J7AM 3B78A 2UUCE 4K0KE 2PNZA 5DRQA 3V5RA 2LJPA 5C0XE 4DR2I 4JI1E 3M7NG 2EFGA 3P76A 1ZXMA 1UDQA 1Y6ZA 4IS9A 4JI3E 2V2ZA 1N34E 2WP8B 3ZZUA 1FJGE 4BA1B 3B4TA 2CG9A 3LNUA 4KHPI 1FKAE 2VF3A 4WUCA 2F4VE 4JI4E 1OYPA 5LMNI 4LF4E 5K36C 4DR1I 4IZKA 3J7AG 3UHMA 4DUYI 2HK2A 2Z5CA 4RPFA 1HNWI 2VQFE 4OX9I 2UXBE 2IOQA 4NXNE 2HKJA 1J5EE 4JI2E 1P42A 4DXLA 4Z7CA 2UUBI 2E5LE 4X66I 1HNZE 1Z0GA 3QT7A 4HXZA 5K36F 1KKHA 2V8PA 1USVA 2V34A 4WUBA 2PO0A 4FN5A 2UXDI 3QT6A 2UU9I 3PS1A 4QNKA 1N33I 2NN6C 4JI0I 5C0XB 3H1CA 4DR6I 3PRYA 3CDJA 4LF6I 2PNMA 2O3ZA 1Z5AA 3WU6A 2A2DA 3Q6MA 1USUA 5L3JA 5JEAB 4MU0A 3GMEA 3WU3A 1HNXE 4DR2E 4R1FA 3ZZTA 1XMOE 4YY3I 2BM1A 4K0KI 2Z5BA 2NN6F 4DPWA 3K1JA 1Z5CA 3ZZ0A 1VI7A 3LPSA 3HULA 5GMEA 1A6FA 3QT8A 4JI3I 5DROA 2Q2EB 4KHPE 3ZKBA 2WNRA 4IZJD 3QT5A 3CDIA 4HY1A 1H72C 2X7IA 2PNZB 4DR1E 4GKKE 5DNXA 1H73A 2GO4A 1B62A 2X36A 4HACA 1HNWE 4X62I 4DV1E 2UUAI 2BA0G 2VQFI 4B3TI 2UXBI 3PYGA 2R3VA 2J65A 1PKPA 2PO1A 4MU4A 4X66E 4FW5A 4FW6A 3PYEA 4N3OA 1IBLI 2E5LI 2PNLA 4IZKB 1I94I 2Z5CB 3P06A 1NHJA 4FWDA 4IZJA 2UXDE 2UU9E 1NHIA 4FW4A 1E3HA 3M85G 1N33E 1E3PA 4DPYA 4LFCI 5BR8I 2IOPA 1HK7A 3B82A 2V2VA 1R6MA 4LF6E 4LF5I 1OYRA 4X65I 5FLXC 4DR3I 2DEJA 4HYMA 4GQUA 4M1KA 4FWGA 4MU1A 1ZM2A 4AIMA 3WU4A 4DV5E 4YY3E 2PO0B 2HFSA 3WU5A 1HNXI 1XHKA 1XMOI 1FWKA 3GLLA 1IBMI 1WUUA 1Z0EA 3H4LA 1BKNA 5K36D 1DARA 4J3DA 4OO1C 1ZXNA 1EI1A 1ZM4A 2HKEA 5JEAE 4DPXA 4LF7I 3LTOA 4DV6E 5DRRA 4XTJA 4EMDA 2Z5BB 4GKKI 4X62E 3HJCA 2UUAE 1FWLA 1XNQE 1S16A 3F0NA 3P3CA 4MYUA 4B3TE 4DV1I 4I3HA 4OO1F 2WNRB 2JE6A 1Z59A 1IBLE 1N36I 1Z0BA 2NN6D 2BR2A 3PYFA 1I94E 5K36A 4DPTA 4BA2A 4HACB 1MX0A 2PO2A 1PIEA 1K47A 1N32E 4IFDD 4LF9E 4DR5E 1ELOA 4LFCE 5BR8E 4YHHI 4AQYI 1MU5A 4LF5E 1Y4UA 4MDTA 2PO1B 4X65E 1HR0E 4DR3E 4DV3E 4OKGA 2XEXA 3HKMA 2C37A 2IESA 4IFDC 3V2UC 2IERA 4B3ME 4LCFA 4IZJB 1Z0WA 4DV5I 4JYAI 4MYTA 2NN6A 5LL6R 1IBME 4DV0I 2O1UA 2O1TA 5K36E 1FI4A 2GQ0A 5LMUE 4IFDA 4LPFA 2ZM6I 4LF7E 1H74A 2C38B 2JEAA 4IFDF 1KVKA 4BA1A 2HHHI 4B3SI 3Q1QA 1FNMA 4DV6I 1XXEA 2NPFA 1VISA 4B3RI 4JI8I 4UT4A 1XNQI 1ZM3A 3D4JA 3DD6A 5IT9C 1N36E 4P52A 2NN6E 1Z0VA 4USKA 5C0XC 1KTVA 3Q6NA 1KIJA 1RR9A 3M7ND 5IT9Q 4YHHE 4DUZI 4AQYE 4U3DA 1N32I 5JEAC 3GONA 4LF9I 4DR5I 2JE6B 4FW3A 2JEBA 1OYSA 4LFAI 2BR2B 3KRNA 1HR0I 1S4EA 2ZBKB 1Z5BA 3P3GA 5K36B 4DV3I 5C0XF 3CWVA 4JI5I 4BA2B 4NXMI
chains in the Genus database with same CATH topology
4QNKA 4MU0A 5EKWA 4LPFA 1RHYA 2F1DA 4MU4A 4QNJA 5ELWA 2AE8A 5EL9A 5DNXA 4LOMA 4MU3A 5DNLA 4GQUA 4MU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNK A;  4MU0 A;  5EKW A;  4LPF A;  1RHY A;  2F1D A;  4MU4 A;  4QNJ A;  5ELW A;  2AE8 A;  5EL9 A;  5DNX A;  4LOM A;  4MU3 A;  5DNL A;  4GQU A;  4MU1 A; 
#chains in the Genus database with same CATH topology
 2PO2 B;  4JG4 A;  3GCM A;  2AE8 A;  4ISA A;  4B3M I;  4JV5 I;  4JYA E;  4DR7 E;  4OO1 D;  4UTG A;  4ED4 A;  4LF8 I;  4DV0 E;  4GKJ I;  5FLX Q;  1QZR A;  1D6T A;  4Z7Y A;  2JT2 A;  4DV7 E;  2ZM6 E;  1Z0T A;  3U1Y A;  2GS8 A;  3L7Z A;  1UDS A;  3PS3 A;  2C39 A;  5LMU I;  2HHH E;  4B3S E;  4DU8 A;  5EKW A;  2VQE I;  1Z0C A;  4B3R E;  4JI8 E;  2NN6 B;  5DRP A;  4MQY A;  3J80 C;  4JI7 I;  4IFD B;  4OO1 A;  4ZVI A;  2BV3 A;  1YHC A;  2JEA B;  4AM3 A;  2AJ4 A;  3T1H I;  1IBK E;  3T1Y I;  1NHH A;  3JAM C;  2BA1 G;  1EA6 A;  3J80 Q;  4AID A;  1R6L A;  4PU9 A;  1RRE A;  2CVE A;  4DR4 E;  5ELW A;  1PVG A;  4URL A;  2O1W A;  1Y60 A;  5DNL A;  3U1K A;  4DUZ E;  2HK3 A;  3JAM Q;  2F1D A;  3K85 A;  5IWA I;  4LFA E;  4KQV A;  2BM0 A;  4LFB I;  5A2Q C;  4JI5 E;  4NXM E;  4QNJ A;  4PRX A;  4JV5 E;  4OO1 E;  4LF8 E;  4GKJ E;  4DR7 I;  3NZK A;  5GMD A;  3OTO I;  4FW9 A;  5A2Q Q;  2CGE A;  3B8H A;  2BA0 D;  2O1V A;  1UDN A;  4DV4 I;  2JEB B;  2ZIT A;  1N0U A;  1XMQ E;  2HFU A;  4DV7 I;  1XNR I;  2OI2 A;  4JI6 I;  4DV2 I;  2WP8 A;  4X64 E;  2UXC E;  3P3E A;  4WUD A;  2VQE E;  1RHY A;  3ZM7 A;  3PYD A;  5FWK A;  1Y5Y A;  1ZM9 A;  4LCG A;  4USM A;  2V2Q A;  2E1R A;  3M6A A;  2UUC I;  2DEI A;  3K17 A;  4JI7 E;  5C0X D;  3M85 D;  1MG7 A;  4JI1 I;  4NBQ A;  3L7Z B;  3T1H E;  3PS2 A;  1UEK A;  2C39 B;  3T1Y E;  1N0V C;  1Y4S A;  2R42 A;  1N34 I;  1H7U A;  4DU7 A;  1FJG I;  1IBK I;  5JEA D;  1YH8 A;  1H7S A;  3J81 C;  5LMN E;  4LCH A;  2F4V I;  1UDO A;  4DUY E;  4JI4 I;  3ZKD A;  4IFD E;  4DR4 I;  4LF4 I;  4OZE A;  5IWA E;  4OX9 E;  4OO1 B;  4DPU A;  4PRV A;  2VES A;  3J81 Q;  4NXN I;  1B63 A;  4LFB E;  1J5E I;  2UUB E;  4JI2 I;  5C0X A;  2J7K A;  4P7A A;  1OJ4 A;  4U3B A;  1HNZ I;  5EL9 A;  2CZ9 A;  5JEA A;  3OTO E;  2WW4 A;  5JEA F;  4FWH A;  4LOM A;  4DV4 E;  4JI0 E;  4DR6 E;  1XNR E;  4JI6 E;  4DV2 E;  2Z5E A;  2C37 B;  4MU3 A;  1XMQ I;  1U2R A;  2BA1 D;  2A2C A;  4X64 I;  2UXC I;  1NZ0 A;  4FW7 A;  2C38 A;  2GO3 A;  3J7A M;  3B78 A;  2UUC E;  4K0K E;  2PNZ A;  5DRQ A;  3V5R A;  2LJP A;  5C0X E;  4DR2 I;  4JI1 E;  3M7N G;  2EFG A;  3P76 A;  1ZXM A;  1UDQ A;  1Y6Z A;  4IS9 A;  4JI3 E;  2V2Z A;  1N34 E;  2WP8 B;  3ZZU A;  1FJG E;  4BA1 B;  3B4T A;  2CG9 A;  3LNU A;  4KHP I;  1FKA E;  2VF3 A;  4WUC A;  2F4V E;  4JI4 E;  1OYP A;  5LMN I;  4LF4 E;  5K36 C;  4DR1 I;  4IZK A;  3J7A G;  3UHM A;  4DUY I;  2HK2 A;  2Z5C A;  4RPF A;  1HNW I;  2VQF E;  4OX9 I;  2UXB E;  2IOQ A;  4NXN E;  2HKJ A;  1J5E E;  4JI2 E;  1P42 A;  4DXL A;  4Z7C A;  2UUB I;  2E5L E;  4X66 I;  1HNZ E;  1Z0G A;  3QT7 A;  4HXZ A;  5K36 F;  1KKH A;  2V8P A;  1USV A;  2V34 A;  4WUB A;  2PO0 A;  4FN5 A;  2UXD I;  3QT6 A;  2UU9 I;  3PS1 A;  4QNK A;  1N33 I;  2NN6 C;  4JI0 I;  5C0X B;  3H1C A;  4DR6 I;  3PRY A;  3CDJ A;  4LF6 I;  2PNM A;  2O3Z A;  1Z5A A;  3WU6 A;  2A2D A;  3Q6M A;  1USU A;  5L3J A;  5JEA B;  4MU0 A;  3GME A;  3WU3 A;  1HNX E;  4DR2 E;  4R1F A;  3ZZT A;  1XMO E;  4YY3 I;  2BM1 A;  4K0K I;  2Z5B A;  2NN6 F;  4DPW A;  3K1J A;  1Z5C A;  3ZZ0 A;  1VI7 A;  3LPS A;  3HUL A;  5GME A;  1A6F A;  3QT8 A;  4JI3 I;  5DRO A;  2Q2E B;  4KHP E;  3ZKB A;  2WNR A;  4IZJ D;  3QT5 A;  3CDI A;  4HY1 A;  1H72 C;  2X7I A;  2PNZ B;  4DR1 E;  4GKK E;  5DNX A;  1H73 A;  2GO4 A;  1B62 A;  2X36 A;  4HAC A;  1HNW E;  4X62 I;  4DV1 E;  2UUA I;  2BA0 G;  2VQF I;  4B3T I;  2UXB I;  3PYG A;  2R3V A;  2J65 A;  1PKP A;  2PO1 A;  4MU4 A;  4X66 E;  4FW5 A;  4FW6 A;  3PYE A;  4N3O A;  1IBL I;  2E5L I;  2PNL A;  4IZK B;  1I94 I;  2Z5C B;  3P06 A;  1NHJ A;  4FWD A;  4IZJ A;  2UXD E;  2UU9 E;  1NHI A;  4FW4 A;  1E3H A;  3M85 G;  1N33 E;  1E3P A;  4DPY A;  4LFC I;  5BR8 I;  2IOP A;  1HK7 A;  3B82 A;  2V2V A;  1R6M A;  4LF6 E;  4LF5 I;  1OYR A;  4X65 I;  5FLX C;  4DR3 I;  2DEJ A;  4HYM A;  4GQU A;  4M1K A;  4FWG A;  4MU1 A;  1ZM2 A;  4AIM A;  3WU4 A;  4DV5 E;  4YY3 E;  2PO0 B;  2HFS A;  3WU5 A;  1HNX I;  1XHK A;  1XMO I;  1FWK A;  3GLL A;  1IBM I;  1WUU A;  1Z0E A;  3H4L A;  1BKN A;  5K36 D;  1DAR A;  4J3D A;  4OO1 C;  1ZXN A;  1EI1 A;  1ZM4 A;  2HKE A;  5JEA E;  4DPX A;  4LF7 I;  3LTO A;  4DV6 E;  5DRR A;  4XTJ A;  4EMD A;  2Z5B B;  4GKK I;  4X62 E;  3HJC A;  2UUA E;  1FWL A;  1XNQ E;  1S16 A;  3F0N A;  3P3C A;  4MYU A;  4B3T E;  4DV1 I;  4I3H A;  4OO1 F;  2WNR B;  2JE6 A;  1Z59 A;  1IBL E;  1N36 I;  1Z0B A;  2NN6 D;  2BR2 A;  3PYF A;  1I94 E;  5K36 A;  4DPT A;  4BA2 A;  4HAC B;  1MX0 A;  2PO2 A;  1PIE A;  1K47 A;  1N32 E;  4IFD D;  4LF9 E;  4DR5 E;  1ELO A;  4LFC E;  5BR8 E;  4YHH I;  4AQY I;  1MU5 A;  4LF5 E;  1Y4U A;  4MDT A;  2PO1 B;  4X65 E;  1HR0 E;  4DR3 E;  4DV3 E;  4OKG A;  2XEX A;  3HKM A;  2C37 A;  2IES A;  4IFD C;  3V2U C;  2IER A;  4B3M E;  4LCF A;  4IZJ B;  1Z0W A;  4DV5 I;  4JYA I;  4MYT A;  2NN6 A;  5LL6 R;  1IBM E;  4DV0 I;  2O1U A;  2O1T A;  5K36 E;  1FI4 A;  2GQ0 A;  5LMU E;  4IFD A;  4LPF A;  2ZM6 I;  4LF7 E;  1H74 A;  2C38 B;  2JEA A;  4IFD F;  1KVK A;  4BA1 A;  2HHH I;  4B3S I;  3Q1Q A;  1FNM A;  4DV6 I;  1XXE A;  2NPF A;  1VIS A;  4B3R I;  4JI8 I;  4UT4 A;  1XNQ I;  1ZM3 A;  3D4J A;  3DD6 A;  5IT9 C;  1N36 E;  4P52 A;  2NN6 E;  1Z0V A;  4USK A;  5C0X C;  1KTV A;  3Q6N A;  1KIJ A;  1RR9 A;  3M7N D;  5IT9 Q;  4YHH E;  4DUZ I;  4AQY E;  4U3D A;  1N32 I;  5JEA C;  3GON A;  4LF9 I;  4DR5 I;  2JE6 B;  4FW3 A;  2JEB A;  1OYS A;  4LFA I;  2BR2 B;  3KRN A;  1HR0 I;  1S4E A;  2ZBK B;  1Z5B A;  3P3G A;  5K36 B;  4DV3 I;  5C0X F;  3CWV A;  4JI5 I;  4BA2 B;  4NXM I; 
#chains in the Genus database with same CATH homology
 4QNK A;  4MU0 A;  5EKW A;  4LPF A;  1RHY A;  2F1D A;  4MU4 A;  4QNJ A;  5ELW A;  2AE8 A;  5EL9 A;  5DNX A;  4LOM A;  4MU3 A;  5DNL A;  4GQU A;  4MU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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