4MU1A

The structure of wt a. thaliana igpd2 in complex with mn2+, imidazole, and sulfate at 1.5 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
185
structure length
184
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Arabidopsis thaliana
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 54
structure length 184
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A02
4MU3A 4MU1A 1RHYA 5ELWA 4QNJA 4MU4A 4LPFA 4QNKA 2AE8A 5EKWA 5EL9A 2F1DA 5DNXA 4LOMA 4GQUA 4MU0A 5DNLA
chains in the Genus database with same CATH superfamily
2ZBKB 3M6AA 4OZEA 4GKKI 4GKJE 4IFDF 5LMNE 4GKJI 2CGEA 3J7AM 1B63A 4USMA 3P06A 3B4TA 1OYRA 4PRVA 2UXDE 2BM0A 4P7AA 2UXDI 2PNZB 3QT5A 4JI4I 2E1RA 4JI6E 2BR2B 4LCHA 4JI6I 1KKHA 4HACA 2V2ZA 3GMEA 4Z7YA 3PRYA 4IS9A 4FW5A 1DARA 2E5LE 2UXCE 4BA1B 3M85D 4DUYE 4DV1E 4DUYI 4DV1I 2A2CA 2A2DA 1J5EE 2WP8B 3WU3A 1E3HA 2VQFI 2JE6A 2IOPA 2Q2EB 4B3SE 2ZITA 4MYUA 3B82A 2V34A 4FWGA 1E3PA 5DNLA 1YHCA 2R42A 1HNZI 2J7KA 4LCFA 4DV4E 2NN6B 2C37B 4DV4I 4OKGA 1KTVA 5ELWA 5K36F 1A6FA 2NN6D 5DRRA 2UUBE 1Z5BA 4DXLA 2AE8A 1XMOE 4WUBA 2V8PA 2GQ0A 4XTJA 2NPFA 2NN6F 4DPXA 3LNUA 4FW3A 2J65A 2BA0G 4FWDA 1MG7A 1VISA 4GQUA 3WU4A 1PVGA 4NBQA 4UT4A 3PS3A 1ZM3A 4NXNI 2BA1G 4UTGA 1N0VC 5BR8E 5BR8I 1Y5YA 4GKKE 4X62E 3H4LA 5DNXA 4DPTA 5JEAE 4X62I 2BR2A 5IWAE 2JE6B 5IWAI 2F4VE 1WUUA 2F4VI 3B78A 1UDQA 4DV3E 2DEJA 4FW9A 4BA1A 4DV3I 4URLA 4IFDE 3PYGA 2XEXA 4LPFA 4MU4A 1Z0WA 1Z0TA 3DD6A 4J3DA 4DPUA 4B3ME 1HNXE 4JI3I 4JV5E 4LFAE 4B3MI 1HNXI 4JV5I 3ZM7A 1FJGI 2BV3A 1KVKA 5EL9A 2UUAI 1UDOA 1HNWE 1U2RA 1FI4A 4K0KI 3PS2A 1OYPA 1EA6A 2GS8A 1N0UA 1N32E 3M85G 4AIMA 4OO1C 1N32I 2Z5BA 2PO1B 4MQYA 4JI4E 4JI2I 1ELOA 2HK3A 2IERA 3ZKDA 1I94I 1OYSA 1YH8A 5K36E 5LMUE 2Z5CA 3QT6A 5DRQA 1ZXMA 1N33I 2CZ9A 2VQEE 5LMUI 1IBKI 2VQEI 2V2QA 1FNMA 1HR0E 4X64E 1HR0I 4X64I 3D4JA 4X65E 3ZZUA 5FWKA 2C38A 4WUCA 2VQFE 4DR2E 4X65I 4DR1E 1XMQE 4DR2I 1XMQI 2Z5EA 4DR1I 1S16A 4LFCE 3P3EA 4LFCI 1Y4UA 2NN6E 1PKPA 4LF5E 3U1YA 4LF5I 1HNZE 3OTOE 1D6TA 3OTOI 3UHMA 4LF8E 2PNMA 4LF8I 3T1YE 3T1YI 2WNRB 1P42A 2X36A 2C39B 2Z5BB 3B8HA 1Y4SA 2PO2A 4DU8A 3J81Q 1Z0VA 4R1FA 1USVA 3Q6MA 2JEBA 3GCMA 4FW4A 5C0XA 4DR7E 1XNRE 1USUA 4FWHA 4DR7I 4I3HA 2Z5CB 1XNRI 4LF6E 4NXNE 4DR6I 4LF6I 5FLXQ 3J81C 4MYTA 1Y6ZA 4OX9E 2PO1A 4OX9I 4OO1A 3HKMA 1Z0CA 3CDIA 1XXEA 2C38B 3J80Q 2JEAB 3M7ND 3QT7A 4QNJA 4DR5I 1IBLI 2F1DA 5FLXC 2X7IA 2O1WA 4FN5A 1QZRA 3J80C 1FKAE 1H72C 5EKWA 4QNKA 4MU1A 1FWLA 4DV6E 4DV6I 2UU9I 3J7AG 3Q1QA 4JI3E 4JI7I 4DV5E 1Z0EA 2ZM6E 4BA2A 5DROA 5GMEA 4EMDA 2ZM6I 4DV5I 5JEAC 1FJGE 4DPWA 2CVEA 2UUAE 4HY1A 5JEAB 5GMDA 1H7SA 4ISAA 1OJ4A 5LL6R 4X66E 4DV7I 2PO2B 2WW4A 4X66I 2GO4A 4K0KE 5JEAD 5C0XC 2VF3A 4PU9A 2JEBB 4B3RI 5C0XB 4WUDA 1EI1A 2DEIA 3F0NA 4IFDC 3ZZ0A 2HK2A 4IFDB 3QT8A 5C0XD 2LJPA 4AQYI 2WNRA 3K17A 4HXZA 4Z7CA 4LF9I 1XNQE 4IFDD 2C39A 1XNQI 4OO1B 4JI2E 5IT9Q 3P3GA 3JAMQ 4DV2I 4OO1D 1Z5AA 2R3VA 4LCGA 3V2UC 1I94E 2CG9A 4IZKA 4IZJA 2HKEA 4MDTA 4AIDA 4JI0E 3L7ZA 1N33E 1NHHA 2O1UA 3P3CA 4JI0I 4ED4A 2BM1A 1IBKE 2UXBE 2UXBI 1ZM9A 5LMNI 5IT9C 1H74A 2HFUA 3JAMC 4YY3E 3WU6A 4YY3I 4OO1F 4M1KA 1H73A 4RPFA 1K47A 2JEAA 1H7UA 4JG4A 4DPYA 4YHHE 4BA2B 1XHKA 4MU0A 4YHHI 2HKJA 4HYMA 3WU5A 3LPSA 2E5LI 2UXCI 2GO3A 1UDNA 1PIEA 2HHHE 2HHHI 5K36C 2IOQA 5K36B 4U3DA 4DU7A 1J5EI 1IBME 1UDSA 3HULA 1RHYA 4JI5E 1B62A 4PRXA 1IBMI 4JI5I 5K36D 2PO0B 1ZM2A 4LF4E 4DV0E 5A2QQ 4LF4I 3ZKBA 3HJCA 4DV0I 3PYFA 3Q6NA 4B3SI 3GONA 3PYEA 3PS1A 5JEAA 4AM3A 2PNLA 4DR3E 2AJ4A 2NN6C 1N34E 4DR3I 4KQVA 1N34I 3M7NG 3GLLA 1NHIA 5A2QC 4IZKB 4P52A 4IZJB 3L7ZB 2UUCE 2UUBI 3H1CA 4DR6E 4IFDA 1BKNA 4IZJD 2UUCI 2JT2A 4JI1E 1RR9A 3V5RA 1ZXNA 4JI1I 2EFGA 1XMOI 4FW6A 1R6LA 1Y60A 5DRPA 1FWKA 4DR5E 1IBLE 4DR4E 2OI2A 3U1KA 4DR4I 4HACB 3T1HE 3T1HI 1R6MA 3CWVA 1KIJA 4ZVIA 4JI8E 3K1JA 4JI8I 2HFSA 4LF7E 1VI7A 3K85A 2UU9E 2PNZA 4JI7E 1Z0GA 2VESA 4LF7I 1MX0A 3ZZTA 2BA0D 1Z5CA 2IESA 4FW7A 1NHJA 4DV7E 2O1VA 5C0XE 4DUZE 1S4EA 1RREA 4DUZI 2BA1D 4B3RE 3NZKA 3LTOA 1MU5A 5K36A 1NZ0A 2O1TA 2WP8A 1UEKA 4OO1E 4B3TE 4LFBE 4AQYE 4B3TI 2PO0A 4LFBI 4USKA 4LF9E 1ZM4A 4NXME 1N36E 3P76A 4NXMI 1HK7A 1N36I 4LFAI 2V2VA 5L3JA 5JEAF 3KRNA 3PYDA 4KHPE 4DV2E 2O3ZA 4KHPI 4LOMA 4MU3A 1Z59A 4JYAE 2NN6A 2C37A 4N3OA 4JYAI 4U3BA 1HNWI 1Z0BA 5C0XF 3CDJA
chains in the Genus database with same CATH topology
4MU3A 4MU1A 1RHYA 5ELWA 4QNJA 4MU4A 4LPFA 4QNKA 2AE8A 5EKWA 5EL9A 2F1DA 5DNXA 4LOMA 4GQUA 4MU0A 5DNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU3 A;  4MU1 A;  1RHY A;  5ELW A;  4QNJ A;  4MU4 A;  4LPF A;  4QNK A;  2AE8 A;  5EKW A;  5EL9 A;  2F1D A;  5DNX A;  4LOM A;  4GQU A;  4MU0 A;  5DNL A; 
#chains in the Genus database with same CATH topology
 2ZBK B;  3M6A A;  4OZE A;  4GKK I;  4GKJ E;  4IFD F;  5LMN E;  4GKJ I;  2CGE A;  3J7A M;  1B63 A;  4USM A;  3P06 A;  3B4T A;  1OYR A;  4PRV A;  2UXD E;  2BM0 A;  4P7A A;  2UXD I;  2PNZ B;  3QT5 A;  4JI4 I;  2E1R A;  4JI6 E;  2BR2 B;  4LCH A;  4JI6 I;  1KKH A;  4HAC A;  2V2Z A;  3GME A;  4Z7Y A;  3PRY A;  4IS9 A;  4FW5 A;  1DAR A;  2E5L E;  2UXC E;  4BA1 B;  3M85 D;  4DUY E;  4DV1 E;  4DUY I;  4DV1 I;  2A2C A;  2A2D A;  1J5E E;  2WP8 B;  3WU3 A;  1E3H A;  2VQF I;  2JE6 A;  2IOP A;  2Q2E B;  4B3S E;  2ZIT A;  4MYU A;  3B82 A;  2V34 A;  4FWG A;  1E3P A;  5DNL A;  1YHC A;  2R42 A;  1HNZ I;  2J7K A;  4LCF A;  4DV4 E;  2NN6 B;  2C37 B;  4DV4 I;  4OKG A;  1KTV A;  5ELW A;  5K36 F;  1A6F A;  2NN6 D;  5DRR A;  2UUB E;  1Z5B A;  4DXL A;  2AE8 A;  1XMO E;  4WUB A;  2V8P A;  2GQ0 A;  4XTJ A;  2NPF A;  2NN6 F;  4DPX A;  3LNU A;  4FW3 A;  2J65 A;  2BA0 G;  4FWD A;  1MG7 A;  1VIS A;  4GQU A;  3WU4 A;  1PVG A;  4NBQ A;  4UT4 A;  3PS3 A;  1ZM3 A;  4NXN I;  2BA1 G;  4UTG A;  1N0V C;  5BR8 E;  5BR8 I;  1Y5Y A;  4GKK E;  4X62 E;  3H4L A;  5DNX A;  4DPT A;  5JEA E;  4X62 I;  2BR2 A;  5IWA E;  2JE6 B;  5IWA I;  2F4V E;  1WUU A;  2F4V I;  3B78 A;  1UDQ A;  4DV3 E;  2DEJ A;  4FW9 A;  4BA1 A;  4DV3 I;  4URL A;  4IFD E;  3PYG A;  2XEX A;  4LPF A;  4MU4 A;  1Z0W A;  1Z0T A;  3DD6 A;  4J3D A;  4DPU A;  4B3M E;  1HNX E;  4JI3 I;  4JV5 E;  4LFA E;  4B3M I;  1HNX I;  4JV5 I;  3ZM7 A;  1FJG I;  2BV3 A;  1KVK A;  5EL9 A;  2UUA I;  1UDO A;  1HNW E;  1U2R A;  1FI4 A;  4K0K I;  3PS2 A;  1OYP A;  1EA6 A;  2GS8 A;  1N0U A;  1N32 E;  3M85 G;  4AIM A;  4OO1 C;  1N32 I;  2Z5B A;  2PO1 B;  4MQY A;  4JI4 E;  4JI2 I;  1ELO A;  2HK3 A;  2IER A;  3ZKD A;  1I94 I;  1OYS A;  1YH8 A;  5K36 E;  5LMU E;  2Z5C A;  3QT6 A;  5DRQ A;  1ZXM A;  1N33 I;  2CZ9 A;  2VQE E;  5LMU I;  1IBK I;  2VQE I;  2V2Q A;  1FNM A;  1HR0 E;  4X64 E;  1HR0 I;  4X64 I;  3D4J A;  4X65 E;  3ZZU A;  5FWK A;  2C38 A;  4WUC A;  2VQF E;  4DR2 E;  4X65 I;  4DR1 E;  1XMQ E;  4DR2 I;  1XMQ I;  2Z5E A;  4DR1 I;  1S16 A;  4LFC E;  3P3E A;  4LFC I;  1Y4U A;  2NN6 E;  1PKP A;  4LF5 E;  3U1Y A;  4LF5 I;  1HNZ E;  3OTO E;  1D6T A;  3OTO I;  3UHM A;  4LF8 E;  2PNM A;  4LF8 I;  3T1Y E;  3T1Y I;  2WNR B;  1P42 A;  2X36 A;  2C39 B;  2Z5B B;  3B8H A;  1Y4S A;  2PO2 A;  4DU8 A;  3J81 Q;  1Z0V A;  4R1F A;  1USV A;  3Q6M A;  2JEB A;  3GCM A;  4FW4 A;  5C0X A;  4DR7 E;  1XNR E;  1USU A;  4FWH A;  4DR7 I;  4I3H A;  2Z5C B;  1XNR I;  4LF6 E;  4NXN E;  4DR6 I;  4LF6 I;  5FLX Q;  3J81 C;  4MYT A;  1Y6Z A;  4OX9 E;  2PO1 A;  4OX9 I;  4OO1 A;  3HKM A;  1Z0C A;  3CDI A;  1XXE A;  2C38 B;  3J80 Q;  2JEA B;  3M7N D;  3QT7 A;  4QNJ A;  4DR5 I;  1IBL I;  2F1D A;  5FLX C;  2X7I A;  2O1W A;  4FN5 A;  1QZR A;  3J80 C;  1FKA E;  1H72 C;  5EKW A;  4QNK A;  4MU1 A;  1FWL A;  4DV6 E;  4DV6 I;  2UU9 I;  3J7A G;  3Q1Q A;  4JI3 E;  4JI7 I;  4DV5 E;  1Z0E A;  2ZM6 E;  4BA2 A;  5DRO A;  5GME A;  4EMD A;  2ZM6 I;  4DV5 I;  5JEA C;  1FJG E;  4DPW A;  2CVE A;  2UUA E;  4HY1 A;  5JEA B;  5GMD A;  1H7S A;  4ISA A;  1OJ4 A;  5LL6 R;  4X66 E;  4DV7 I;  2PO2 B;  2WW4 A;  4X66 I;  2GO4 A;  4K0K E;  5JEA D;  5C0X C;  2VF3 A;  4PU9 A;  2JEB B;  4B3R I;  5C0X B;  4WUD A;  1EI1 A;  2DEI A;  3F0N A;  4IFD C;  3ZZ0 A;  2HK2 A;  4IFD B;  3QT8 A;  5C0X D;  2LJP A;  4AQY I;  2WNR A;  3K17 A;  4HXZ A;  4Z7C A;  4LF9 I;  1XNQ E;  4IFD D;  2C39 A;  1XNQ I;  4OO1 B;  4JI2 E;  5IT9 Q;  3P3G A;  3JAM Q;  4DV2 I;  4OO1 D;  1Z5A A;  2R3V A;  4LCG A;  3V2U C;  1I94 E;  2CG9 A;  4IZK A;  4IZJ A;  2HKE A;  4MDT A;  4AID A;  4JI0 E;  3L7Z A;  1N33 E;  1NHH A;  2O1U A;  3P3C A;  4JI0 I;  4ED4 A;  2BM1 A;  1IBK E;  2UXB E;  2UXB I;  1ZM9 A;  5LMN I;  5IT9 C;  1H74 A;  2HFU A;  3JAM C;  4YY3 E;  3WU6 A;  4YY3 I;  4OO1 F;  4M1K A;  1H73 A;  4RPF A;  1K47 A;  2JEA A;  1H7U A;  4JG4 A;  4DPY A;  4YHH E;  4BA2 B;  1XHK A;  4MU0 A;  4YHH I;  2HKJ A;  4HYM A;  3WU5 A;  3LPS A;  2E5L I;  2UXC I;  2GO3 A;  1UDN A;  1PIE A;  2HHH E;  2HHH I;  5K36 C;  2IOQ A;  5K36 B;  4U3D A;  4DU7 A;  1J5E I;  1IBM E;  1UDS A;  3HUL A;  1RHY A;  4JI5 E;  1B62 A;  4PRX A;  1IBM I;  4JI5 I;  5K36 D;  2PO0 B;  1ZM2 A;  4LF4 E;  4DV0 E;  5A2Q Q;  4LF4 I;  3ZKB A;  3HJC A;  4DV0 I;  3PYF A;  3Q6N A;  4B3S I;  3GON A;  3PYE A;  3PS1 A;  5JEA A;  4AM3 A;  2PNL A;  4DR3 E;  2AJ4 A;  2NN6 C;  1N34 E;  4DR3 I;  4KQV A;  1N34 I;  3M7N G;  3GLL A;  1NHI A;  5A2Q C;  4IZK B;  4P52 A;  4IZJ B;  3L7Z B;  2UUC E;  2UUB I;  3H1C A;  4DR6 E;  4IFD A;  1BKN A;  4IZJ D;  2UUC I;  2JT2 A;  4JI1 E;  1RR9 A;  3V5R A;  1ZXN A;  4JI1 I;  2EFG A;  1XMO I;  4FW6 A;  1R6L A;  1Y60 A;  5DRP A;  1FWK A;  4DR5 E;  1IBL E;  4DR4 E;  2OI2 A;  3U1K A;  4DR4 I;  4HAC B;  3T1H E;  3T1H I;  1R6M A;  3CWV A;  1KIJ A;  4ZVI A;  4JI8 E;  3K1J A;  4JI8 I;  2HFS A;  4LF7 E;  1VI7 A;  3K85 A;  2UU9 E;  2PNZ A;  4JI7 E;  1Z0G A;  2VES A;  4LF7 I;  1MX0 A;  3ZZT A;  2BA0 D;  1Z5C A;  2IES A;  4FW7 A;  1NHJ A;  4DV7 E;  2O1V A;  5C0X E;  4DUZ E;  1S4E A;  1RRE A;  4DUZ I;  2BA1 D;  4B3R E;  3NZK A;  3LTO A;  1MU5 A;  5K36 A;  1NZ0 A;  2O1T A;  2WP8 A;  1UEK A;  4OO1 E;  4B3T E;  4LFB E;  4AQY E;  4B3T I;  2PO0 A;  4LFB I;  4USK A;  4LF9 E;  1ZM4 A;  4NXM E;  1N36 E;  3P76 A;  4NXM I;  1HK7 A;  1N36 I;  4LFA I;  2V2V A;  5L3J A;  5JEA F;  3KRN A;  3PYD A;  4KHP E;  4DV2 E;  2O3Z A;  4KHP I;  4LOM A;  4MU3 A;  1Z59 A;  4JYA E;  2NN6 A;  2C37 A;  4N3O A;  4JYA I;  4U3B A;  1HNW I;  1Z0B A;  5C0X F;  3CDJ A; 
#chains in the Genus database with same CATH homology
 4MU3 A;  4MU1 A;  1RHY A;  5ELW A;  4QNJ A;  4MU4 A;  4LPF A;  4QNK A;  2AE8 A;  5EKW A;  5EL9 A;  2F1D A;  5DNX A;  4LOM A;  4GQU A;  4MU0 A;  5DNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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