4MU1A

The structure of wt a. thaliana igpd2 in complex with mn2+, imidazole, and sulfate at 1.5 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
185
structure length
184
Chain Sequence
b'SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 54
structure length 184
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A02
4MU0A 4QNKA 4MU1A 2AE8A 4LPFA 4MU3A 4MU4A 5DNLA 5DNXA 4LOMA 1RHYA 5EL9A 2F1DA 5EKWA 4GQUA 5ELWA 4QNJA
chains in the Genus database with same CATH superfamily
2BM0A 2BA0G 4DV4I 1N32I 5IT9Q 4MYUA 1N33I 2HHHI 2J65A 4QNKA 5BR8E 4DPYA 4YY3I 3UHMA 5JEAC 3PYDA 4DV1I 3WU3A 2LJPA 1N0VC 3PS1A 4Z7YA 1J5EI 1NHIA 2C38A 1HR0E 1Z0GA 2A2CA 3L7ZA 3HJCA 5EKWA 4DV7E 2UXBE 4JI0I 4JI8E 3L7ZB 4LFAE 4KQVA 4DV5I 4GKKE 4DR1I 4JI7E 1P42A 4DV6I 3OTOE 2AE8A 3CDJA 1Z0BA 1U2RA 1OYRA 1UDSA 4AM3A 1A6FA 4K0KI 2NN6D 2Z5EA 1MU5A 4DR3E 2UXDE 2AJ4A 1ZXMA 1OYPA 4M1KA 2NN6F 3P3EA 4USKA 4IFDA 4DPUA 4JI2E 4OKGA 3K85A 1XNRE 2CGEA 4IFDB 4DPWA 3J80C 4DV3E 2UUCI 3M85D 2BA1G 2O1UA 1WUUA 4DUYI 4LF8E 2NN6E 1XHKA 5JEAA 2BV3A 4LFCI 3Q6MA 4DR6I 3U1KA 5DRPA 5JEAB 2BR2B 4UT4A 2E5LE 2JE6A 4LF4E 3HULA 2Z5CB 5DRQA 1N34I 3QT6A 4EMDA 1HNZI 3QT8A 2J7KA 3J80Q 1S4EA 5GMEA 3NZKA 4B3MI 1BKNA 2VQEI 4FW4A 4BA2B 3ZZTA 3CWVA 4FWHA 4FWGA 5LMNE 2V2VA 2O3ZA 4LCGA 4JYAI 4WUBA 5K36C 1FKAE 4P52A 5DRRA 4BA1B 3J81C 2PO2B 5ELWA 4LF7E 5L3JA 1ZM9A 1H7SA 4DU7A 4HACA 4X64I 1Z59A 4PRVA 3QT5A 3J7AM 2JEBA 2C39A 4AQYI 2PO1A 4X65E 4OO1C 4P7AA 4X62I 1XMQI 2EFGA 2UU9I 2JEBB 1RHYA 5IWAE 2C39B 2PO1B 4MQYA 1N36E 4FW7A 4LF6E 3B4TA 2UUBI 2R42A 2WW4A 5LMUI 4DR5E 4IZJA 3JAMQ 2PNMA 2HFUA 4NXME 3V2UC 1I94I 4WUDA 4B3RE 4IZJB 4FW6A 2VQFI 2HK3A 5C0XD 1IBLI 1XNQI 1Z0CA 5C0XA 4DV2E 4JI4E 4JI5I 4DV0E 2ZITA 2GO4A 4JI6I 5C0XB 1ZM4A 1Z0TA 4HXZA 4X66E 2UXCI 1MG7A 1IBKE 3ZKDA 3HKMA 1UEKA 3P76A 1PIEA 3LPSA 4HY1A 2PO0A 2CG9A 2C38B 4USMA 1IBMI 3PYFA 1FJGI 2PO0B 4MDTA 3M7ND 1HNWE 4DUZE 4J3DA 3P06A 4YHHI 5FLXQ 4PRXA 4DXLA 4OX9E 4DR4I 1RREA 2HKEA 4DPTA 4DR2I 4GKJI 4B3SI 5C0XE 3T1HI 2VQFE 3ZZ0A 5K36A 3CDIA 4FW3A 4NXNI 3K17A 2ZM6I 4JI3E 1XMOI 4URLA 4R1FA 4LF5I 5K36B 4DU8A 4DV4E 1N32E 3PS2A 4OO1D 3B78A 1N33E 2HHHE 1OJ4A 4OO1A 1RR9A 4LOMA 4KHPI 3T1YI 4YY3E 4DV1E 4OO1B 4XTJA 1J5EE 4IFDD 1R6LA 2PNZA 1HNXI 1E3PA 1H7UA 1ZXNA 4B3TI 4JI0E 4LPFA 4NBQA 1ZM2A 2PNZB 1FWKA 1YHCA 4DV5E 3KRNA 5A2QQ 4DR1E 2OI2A 1H73A 3B82A 4DV6E 2DEIA 3LNUA 4JV5I 1N0UA 4IFDF 2X36A 4ED4A 4AIMA 1Z0VA 5JEAD 4K0KE 3P3GA 4LFBI 2JEAA 4AIDA 2BM1A 4OO1E 2A2DA 5FWKA 3ZM7A 4FN5A 3PYEA 2Z5BA 1Y5YA 2IOPA 2JEAB 2BA0D 1USVA 5DROA 2GS8A 4Z7CA 1EA6A 4IFDE 3M6AA 1D6TA 2JE6B 5JEAF 4JI1I 2V2ZA 3JAMC 2R3VA 4FWDA 4LF9I 2JT2A 2UUAI 4DR7I 2UUCE 1DARA 4MU0A 4MU1A 3F0NA 5JEAE 3LTOA 3GMEA 2F4VI 2E1RA 4DUYE 4HACB 3H4LA 4FW9A 4LFCE 1YH8A 4DR6E 1S16A 4IZJD 5LL6R 1PKPA 5BR8I 3Q6NA 1NHHA 1N34E 2WNRA 4N3OA 1Z5AA 1HNZE 4FW5A 2V34A 5FLXC 2NN6C 1HR0I 3WU4A 1Z5CA 2O1VA 3DD6A 4B3ME 2VQEE 4DV7I 2UXBI 4MYTA 1KVKA 4JI8I 4LFAI 4GKKI 3ZZUA 4JYAE 4RPFA 4JI7I 1Z5BA 2O1TA 3OTOI 3GLLA 1VISA 2WP8A 4JG4A 2BA1D 5C0XF 4X64E 2WP8B 4AQYE 1UDNA 5DNXA 1UDQA 1XMQE 4X62E 3ZKBA 5GMDA 2UU9E 4DR3I 3D4JA 2IOQA 2UUBE 5LMUE 2UXDI 4ZVIA 5K36D 1I94E 3WU6A 2X7IA 3WU5A 5A2QC 1FNMA 1KKHA 1IBLE 4JI2I 1XNQE 2VF3A 4JI5E 1KIJA 1XNRI 4JI6E 4DV3I 2UXCE 5K36F 3U1YA 1B62A 5DNLA 1K47A 3V5RA 3K1JA 4LF8I 2IESA 1MX0A 3P3CA 4MU3A 4OO1F 1IBME 1FJGE 2CZ9A 2PNLA 2NN6A 4OZEA 4YHHE 2E5LI 1R6MA 5K36E 4LF4I 4DR4E 2NN6B 4DPXA 2NPFA 4DR2E 4GKJE 1H74A 4B3SE 1Z0WA 3T1HE 1B63A 1EI1A 2C37A 1FI4A 4IS9A 2V2QA 1H72C 2HFSA 4GQUA 3PS3A 4NXNE 2ZM6E 1XMOE 1VI7A 2C37B 5LMNI 4LF5E 3H1CA 2Q2EB 3B8HA 1Y4UA 2DEJA 2Z5BB 1USUA 4LF7I 4KHPE 3T1YE 5C0XC 1E3HA 4U3BA 2GO3A 1NZ0A 1OYSA 2F1DA 3QT7A 4X65I 3M7NG 1HNXE 5IWAI 2BR2A 1N36I 4B3TE 2ZBKB 3GONA 1ELOA 4LF6I 2V8PA 2Z5CA 1Y4SA 1Y6ZA 3PYGA 4IZKA 4DR5I 4NXMI 1KTVA 4JV5E 4B3RI 4IZKB 2HK2A 4MU4A 4BA2A 1PVGA 4I3HA 3PRYA 4LFBE 4DV2I 4JI4I 1FWLA 2XEXA 4DV0I 2GQ0A 5EL9A 3GCMA 4BA1A 2PO2A 4X66I 1IBKI 1NHJA 1UDOA 4ISAA 1Z0EA 2HKJA 1ZM3A 2VESA 2IERA 2CVEA 4LCHA 5IT9C 4JI1E 1Y60A 2O1WA 2WNRB 4UTGA 1XXEA 4QNJA 3J7AG 1HK7A 4LF9E 1HNWI 3M85G 4WUCA 4DUZI 3Q1QA 4OX9I 4PU9A 2UUAE 4DR7E 4U3DA 1QZRA 4IFDC 4HYMA 4LCFA 2F4VE 4JI3I 3J81Q
chains in the Genus database with same CATH topology
4MU0A 4QNKA 4MU1A 2AE8A 4LPFA 4MU3A 4MU4A 5DNLA 5DNXA 4LOMA 1RHYA 5EL9A 2F1DA 5EKWA 4GQUA 5ELWA 4QNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU0 A;  4QNK A;  4MU1 A;  2AE8 A;  4LPF A;  4MU3 A;  4MU4 A;  5DNL A;  5DNX A;  4LOM A;  1RHY A;  5EL9 A;  2F1D A;  5EKW A;  4GQU A;  5ELW A;  4QNJ A; 
#chains in the Genus database with same CATH topology
 2BM0 A;  2BA0 G;  4DV4 I;  1N32 I;  5IT9 Q;  4MYU A;  1N33 I;  2HHH I;  2J65 A;  4QNK A;  5BR8 E;  4DPY A;  4YY3 I;  3UHM A;  5JEA C;  3PYD A;  4DV1 I;  3WU3 A;  2LJP A;  1N0V C;  3PS1 A;  4Z7Y A;  1J5E I;  1NHI A;  2C38 A;  1HR0 E;  1Z0G A;  2A2C A;  3L7Z A;  3HJC A;  5EKW A;  4DV7 E;  2UXB E;  4JI0 I;  4JI8 E;  3L7Z B;  4LFA E;  4KQV A;  4DV5 I;  4GKK E;  4DR1 I;  4JI7 E;  1P42 A;  4DV6 I;  3OTO E;  2AE8 A;  3CDJ A;  1Z0B A;  1U2R A;  1OYR A;  1UDS A;  4AM3 A;  1A6F A;  4K0K I;  2NN6 D;  2Z5E A;  1MU5 A;  4DR3 E;  2UXD E;  2AJ4 A;  1ZXM A;  1OYP A;  4M1K A;  2NN6 F;  3P3E A;  4USK A;  4IFD A;  4DPU A;  4JI2 E;  4OKG A;  3K85 A;  1XNR E;  2CGE A;  4IFD B;  4DPW A;  3J80 C;  4DV3 E;  2UUC I;  3M85 D;  2BA1 G;  2O1U A;  1WUU A;  4DUY I;  4LF8 E;  2NN6 E;  1XHK A;  5JEA A;  2BV3 A;  4LFC I;  3Q6M A;  4DR6 I;  3U1K A;  5DRP A;  5JEA B;  2BR2 B;  4UT4 A;  2E5L E;  2JE6 A;  4LF4 E;  3HUL A;  2Z5C B;  5DRQ A;  1N34 I;  3QT6 A;  4EMD A;  1HNZ I;  3QT8 A;  2J7K A;  3J80 Q;  1S4E A;  5GME A;  3NZK A;  4B3M I;  1BKN A;  2VQE I;  4FW4 A;  4BA2 B;  3ZZT A;  3CWV A;  4FWH A;  4FWG A;  5LMN E;  2V2V A;  2O3Z A;  4LCG A;  4JYA I;  4WUB A;  5K36 C;  1FKA E;  4P52 A;  5DRR A;  4BA1 B;  3J81 C;  2PO2 B;  5ELW A;  4LF7 E;  5L3J A;  1ZM9 A;  1H7S A;  4DU7 A;  4HAC A;  4X64 I;  1Z59 A;  4PRV A;  3QT5 A;  3J7A M;  2JEB A;  2C39 A;  4AQY I;  2PO1 A;  4X65 E;  4OO1 C;  4P7A A;  4X62 I;  1XMQ I;  2EFG A;  2UU9 I;  2JEB B;  1RHY A;  5IWA E;  2C39 B;  2PO1 B;  4MQY A;  1N36 E;  4FW7 A;  4LF6 E;  3B4T A;  2UUB I;  2R42 A;  2WW4 A;  5LMU I;  4DR5 E;  4IZJ A;  3JAM Q;  2PNM A;  2HFU A;  4NXM E;  3V2U C;  1I94 I;  4WUD A;  4B3R E;  4IZJ B;  4FW6 A;  2VQF I;  2HK3 A;  5C0X D;  1IBL I;  1XNQ I;  1Z0C A;  5C0X A;  4DV2 E;  4JI4 E;  4JI5 I;  4DV0 E;  2ZIT A;  2GO4 A;  4JI6 I;  5C0X B;  1ZM4 A;  1Z0T A;  4HXZ A;  4X66 E;  2UXC I;  1MG7 A;  1IBK E;  3ZKD A;  3HKM A;  1UEK A;  3P76 A;  1PIE A;  3LPS A;  4HY1 A;  2PO0 A;  2CG9 A;  2C38 B;  4USM A;  1IBM I;  3PYF A;  1FJG I;  2PO0 B;  4MDT A;  3M7N D;  1HNW E;  4DUZ E;  4J3D A;  3P06 A;  4YHH I;  5FLX Q;  4PRX A;  4DXL A;  4OX9 E;  4DR4 I;  1RRE A;  2HKE A;  4DPT A;  4DR2 I;  4GKJ I;  4B3S I;  5C0X E;  3T1H I;  2VQF E;  3ZZ0 A;  5K36 A;  3CDI A;  4FW3 A;  4NXN I;  3K17 A;  2ZM6 I;  4JI3 E;  1XMO I;  4URL A;  4R1F A;  4LF5 I;  5K36 B;  4DU8 A;  4DV4 E;  1N32 E;  3PS2 A;  4OO1 D;  3B78 A;  1N33 E;  2HHH E;  1OJ4 A;  4OO1 A;  1RR9 A;  4LOM A;  4KHP I;  3T1Y I;  4YY3 E;  4DV1 E;  4OO1 B;  4XTJ A;  1J5E E;  4IFD D;  1R6L A;  2PNZ A;  1HNX I;  1E3P A;  1H7U A;  1ZXN A;  4B3T I;  4JI0 E;  4LPF A;  4NBQ A;  1ZM2 A;  2PNZ B;  1FWK A;  1YHC A;  4DV5 E;  3KRN A;  5A2Q Q;  4DR1 E;  2OI2 A;  1H73 A;  3B82 A;  4DV6 E;  2DEI A;  3LNU A;  4JV5 I;  1N0U A;  4IFD F;  2X36 A;  4ED4 A;  4AIM A;  1Z0V A;  5JEA D;  4K0K E;  3P3G A;  4LFB I;  2JEA A;  4AID A;  2BM1 A;  4OO1 E;  2A2D A;  5FWK A;  3ZM7 A;  4FN5 A;  3PYE A;  2Z5B A;  1Y5Y A;  2IOP A;  2JEA B;  2BA0 D;  1USV A;  5DRO A;  2GS8 A;  4Z7C A;  1EA6 A;  4IFD E;  3M6A A;  1D6T A;  2JE6 B;  5JEA F;  4JI1 I;  2V2Z A;  3JAM C;  2R3V A;  4FWD A;  4LF9 I;  2JT2 A;  2UUA I;  4DR7 I;  2UUC E;  1DAR A;  4MU0 A;  4MU1 A;  3F0N A;  5JEA E;  3LTO A;  3GME A;  2F4V I;  2E1R A;  4DUY E;  4HAC B;  3H4L A;  4FW9 A;  4LFC E;  1YH8 A;  4DR6 E;  1S16 A;  4IZJ D;  5LL6 R;  1PKP A;  5BR8 I;  3Q6N A;  1NHH A;  1N34 E;  2WNR A;  4N3O A;  1Z5A A;  1HNZ E;  4FW5 A;  2V34 A;  5FLX C;  2NN6 C;  1HR0 I;  3WU4 A;  1Z5C A;  2O1V A;  3DD6 A;  4B3M E;  2VQE E;  4DV7 I;  2UXB I;  4MYT A;  1KVK A;  4JI8 I;  4LFA I;  4GKK I;  3ZZU A;  4JYA E;  4RPF A;  4JI7 I;  1Z5B A;  2O1T A;  3OTO I;  3GLL A;  1VIS A;  2WP8 A;  4JG4 A;  2BA1 D;  5C0X F;  4X64 E;  2WP8 B;  4AQY E;  1UDN A;  5DNX A;  1UDQ A;  1XMQ E;  4X62 E;  3ZKB A;  5GMD A;  2UU9 E;  4DR3 I;  3D4J A;  2IOQ A;  2UUB E;  5LMU E;  2UXD I;  4ZVI A;  5K36 D;  1I94 E;  3WU6 A;  2X7I A;  3WU5 A;  5A2Q C;  1FNM A;  1KKH A;  1IBL E;  4JI2 I;  1XNQ E;  2VF3 A;  4JI5 E;  1KIJ A;  1XNR I;  4JI6 E;  4DV3 I;  2UXC E;  5K36 F;  3U1Y A;  1B62 A;  5DNL A;  1K47 A;  3V5R A;  3K1J A;  4LF8 I;  2IES A;  1MX0 A;  3P3C A;  4MU3 A;  4OO1 F;  1IBM E;  1FJG E;  2CZ9 A;  2PNL A;  2NN6 A;  4OZE A;  4YHH E;  2E5L I;  1R6M A;  5K36 E;  4LF4 I;  4DR4 E;  2NN6 B;  4DPX A;  2NPF A;  4DR2 E;  4GKJ E;  1H74 A;  4B3S E;  1Z0W A;  3T1H E;  1B63 A;  1EI1 A;  2C37 A;  1FI4 A;  4IS9 A;  2V2Q A;  1H72 C;  2HFS A;  4GQU A;  3PS3 A;  4NXN E;  2ZM6 E;  1XMO E;  1VI7 A;  2C37 B;  5LMN I;  4LF5 E;  3H1C A;  2Q2E B;  3B8H A;  1Y4U A;  2DEJ A;  2Z5B B;  1USU A;  4LF7 I;  4KHP E;  3T1Y E;  5C0X C;  1E3H A;  4U3B A;  2GO3 A;  1NZ0 A;  1OYS A;  2F1D A;  3QT7 A;  4X65 I;  3M7N G;  1HNX E;  5IWA I;  2BR2 A;  1N36 I;  4B3T E;  2ZBK B;  3GON A;  1ELO A;  4LF6 I;  2V8P A;  2Z5C A;  1Y4S A;  1Y6Z A;  3PYG A;  4IZK A;  4DR5 I;  4NXM I;  1KTV A;  4JV5 E;  4B3R I;  4IZK B;  2HK2 A;  4MU4 A;  4BA2 A;  1PVG A;  4I3H A;  3PRY A;  4LFB E;  4DV2 I;  4JI4 I;  1FWL A;  2XEX A;  4DV0 I;  2GQ0 A;  5EL9 A;  3GCM A;  4BA1 A;  2PO2 A;  4X66 I;  1IBK I;  1NHJ A;  1UDO A;  4ISA A;  1Z0E A;  2HKJ A;  1ZM3 A;  2VES A;  2IER A;  2CVE A;  4LCH A;  5IT9 C;  4JI1 E;  1Y60 A;  2O1W A;  2WNR B;  4UTG A;  1XXE A;  4QNJ A;  3J7A G;  1HK7 A;  4LF9 E;  1HNW I;  3M85 G;  4WUC A;  4DUZ I;  3Q1Q A;  4OX9 I;  4PU9 A;  2UUA E;  4DR7 E;  4U3D A;  1QZR A;  4IFD C;  4HYM A;  4LCF A;  2F4V E;  4JI3 I;  3J81 Q; 
#chains in the Genus database with same CATH homology
 4MU0 A;  4QNK A;  4MU1 A;  2AE8 A;  4LPF A;  4MU3 A;  4MU4 A;  5DNL A;  5DNX A;  4LOM A;  1RHY A;  5EL9 A;  2F1D A;  5EKW A;  4GQU A;  5ELW A;  4QNJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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