4MU1A

The structure of wt a. thaliana igpd2 in complex with mn2+, imidazole, and sulfate at 1.5 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
185
structure length
184
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 54
structure length 184
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A02
4LPFA 1RHYA 5DNLA 5EL9A 4QNKA 2AE8A 4QNJA 5ELWA 4MU1A 4LOMA 5EKWA 4MU0A 2F1DA 4GQUA 4MU4A 4MU3A 5DNXA
chains in the Genus database with same CATH superfamily
1RHYA 1S16A 2X36A 4BA1B 4B3ME 4FN5A 3DD6A 4HY1A 4U3DA 2O1TA 4JI0I 2BM1A 3WU4A 2UXCI 2VQEE 4PRVA 3ZZTA 2C38B 2C39B 4LPFA 1OJ4A 3D4JA 2UXBI 2PO1A 1Y60A 3GLLA 2V2QA 1ZXMA 2C39A 3LTOA 3J80C 4DR3I 4LFBI 2ZBKB 3L7ZB 5JEAF 1EA6A 3M6AA 5DRQA 3H4LA 4GKJE 1Z0EA 2Z5CB 3KRNA 1XNQI 3M85D 4DR5E 4DV3E 2AE8A 4DPXA 2Z5CA 4DR4E 1Z5AA 4DR7I 4DPWA 1H7UA 4OZEA 3WU6A 2O1WA 4IZJA 5LMNI 1Y5YA 1HNZE 4R1FA 4IFDF 2NN6A 4DV1I 4FW7A 2Q2EB 2NN6D 3WU3A 2PO2A 2LJPA 4DXLA 5LMUI 4X66E 3V5RA 4PU9A 3M7ND 4FW6A 2VF3A 3PS2A 2V8PA 2XEXA 3CWVA 3QT7A 4AIMA 2BA1G 2OI2A 3J81Q 1YHCA 3GMEA 2BA0G 2V34A 2J65A 5IT9Q 5A2QC 4Z7YA 2CZ9A 1HR0E 1B63A 3HJCA 4B3MI 4DUZE 2PO0B 4JI0E 4LFAE 2VQEI 5JEAB 3HKMA 1EI1A 4QNKA 2CGEA 5K36A 4AIDA 3T1HE 2UU9E 4LF9E 3PRYA 5C0XA 4DR3E 3JAMC 1FJGE 5K36D 3J81C 5C0XD 2PNLA 1NZ0A 2O3ZA 2JE6A 5IT9C 4P52A 4LF7E 2HKJA 2DEJA 1BKNA 4JI4E 1Z0GA 1KKHA 4GKJI 4IFDB 3ZKDA 3K85A 4USMA 4I3HA 4DV3I 4AM3A 4IFDA 4DR4I 4DV0E 4MQYA 3M85G 1UEKA 1USUA 1HNZI 4DU8A 1U2RA 4DV7E 1OYSA 1USVA 4HACB 4URLA 3OTOE 2DEIA 4EMDA 3T1YE 4X66I 4RPFA 4DU7A 4B3RE 2O1UA 5JEAE 5DNLA 2J7KA 1HR0I 1N36E 1UDNA 1H73A 2HKEA 3P3GA 4J3DA 1R6LA 4DUZI 4LFAI 1N0VC 4BA1A 1IBMI 3PYEA 2NPFA 3Q6NA 4PRXA 3Q6MA 2WNRB 3QT8A 1Z5BA 3HULA 4DPUA 2C38A 3T1HI 2UU9I 4LF9I 4IFDE 4NXME 1FJGI 1H7SA 4LF5E 4JI6E 2UUBE 4LF7I 4DUYE 2JEBB 2Z5EA 2GQ0A 5FWKA 3ZZ0A 3PS1A 4JI4I 5DRRA 4FW4A 4KHPE 2IOQA 3K17A 2HK3A 1YH8A 3L7ZA 4P7AA 4X62E 4MYUA 4OX9E 5GMEA 1QZRA 1OYPA 1Y6ZA 2F1DA 5DNXA 2V2VA 3PS3A 1FNMA 2EFGA 3B8HA 3P06A 4YHHI 5EKWA 4YY3E 4DV0I 4FWHA 4IZJD 5IWAE 1XMQE 2JEAB 4DR6I 1HK7A 4DV7I 2ZITA 3OTOI 1DARA 4LF8E 3U1KA 4OO1F 1UDOA 2GO4A 1ZM4A 4NXNE 3T1YI 2E1RA 4DPTA 1B62A 4DV5I 5C0XC 4UTGA 4B3RI 3GONA 1I94E 2UXDE 5LL6R 1A6FA 1HNWE 1KVKA 2F4VE 1MX0A 4AQYE 4OO1C 1N36I 3J7AM 2A2DA 1N0UA 4MU0A 1ELOA 1IBME 4FW5A 1ZM2A 4Z7CA 4X64E 4DV2E 1IBLE 2PO0A 2HHHI 4DR1E 4JYAE 4X65E 1MU5A 5FLXQ 5JEAA 4NXMI 2Z5BB 5JEAD 4HYMA 4LF5I 4JI6I 1XNRI 3ZZUA 5BR8I 2UUBI 2WP8B 4KQVA 4DUYI 4LOMA 4DV6E 1IBKI 4LFCE 4B3TE 1Z0TA 4KHPI 4X62I 4OX9I 4IS9A 1N33E 1E3PA 2C37B 3NZKA 4YHHE 2VESA 4OO1B 4IFDD 1ZXNA 1FWKA 2IERA 4ISAA 4YY3I 2CVEA 4JI1E 3QT5A 1S4EA 2C37A 1WUUA 5IWAI 4DR6E 1XMQI 4DV4E 3PYFA 1J5EE 4NBQA 1H72C 4FWGA 4N3OA 2ZM6I 4LF8I 3B78A 5L3JA 4HACA 1NHHA 4NXNI 5ELWA 4DV5E 4MU1A 4JI5E 4JI2E 3Q1QA 4MU4A 1KIJA 1OYRA 1I94I 4LCFA 2UXDI 4K0KE 3M7NG 1HNWI 2F4VI 1Z59A 2VQFI 4AQYI 2R42A 1E3HA 4GKKI 2NN6F 2WW4A 4XTJA 1Z0CA 4X64I 1IBLI 4DV2I 2HHHE 3QT6A 4M1KA 1UDSA 4DR1I 4JYAI 4X65I 3CDIA 4DR2E 2UUCE 5EL9A 1H74A 1Z0VA 2BR2B 4WUBA 2WNRA 4JI3E 4UT4A 1XNRE 5BR8E 3GCMA 2BR2A 2NN6C 4OO1E 1IBKE 1NHJA 1XMOE 2BV3A 4MU3A 4DV6I 4LFCI 4B3TI 2PO1B 2JEBA 3ZM7A 2PNMA 4B3SE 2IOPA 4BA2B 1N33I 3H1CA 1K47A 4WUDA 1R6MA 4BA2A 4JI1I 5K36F 2R3VA 4JI7E 5C0XF 4GQUA 4DPYA 1N32E 4DV4I 1J5EI 3K1JA 2GO3A 5DROA 2ZM6E 2JEAA 3B4TA 2E5LE 3P3EA 4IZKB 1Z0WA 4LF4E 2HFSA 4IZJB 1P42A 5GMDA 4JI5I 4JI2I 5K36C 2NN6B 4IZKA 5JEAC 1VISA 5A2QQ 4JV5I 2PO2B 2IESA 1FKAE 4K0KI 2VQFE 2HK2A 2BM0A 4GKKE 4USKA 1RREA 1N34E 4LF6E 4ZVIA 2UUAE 2V2ZA 3PYDA 3F0NA 1HNXE 5DRPA 1PVGA 2JT2A 4IFDC 3JAMQ 4DR2I 4JI8E 2UUCI 1Z5CA 2PNZB 4JI3I 4QNJA 4LCHA 2Z5BA 2PNZA 1XMOI 2UXCE 3WU5A 2WP8A 5K36B 5C0XB 4FW3A 3V2UC 1NHIA 4FWDA 4B3SI 2UXBE 1XHKA 1PIEA 2AJ4A 2O1VA 2JE6B 1PKPA 5FLXC 1ZM9A 3B82A 3U1YA 4JG4A 4LFBE 1FWLA 1XXEA 1UDQA 4U3BA 3PYGA 4OO1A 3P76A 4JI7I 2A2CA 3ZKBA 1N32I 2NN6E 4OO1D 1KTVA 4MDTA 1FI4A 1XNQE 2CG9A 2E5LI 1VI7A 4DR5I 4LF4I 2HFUA 1ZM3A 4DR7E 1RR9A 2GS8A 4WUCA 1Z0BA 5LMNE 1Y4UA 4FW9A 4JV5E 4HXZA 4MYTA 4DV1E 3LNUA 1D6TA 3J7AG 5LMUE 2BA1D 1N34I 4LF6I 3P3CA 2UUAI 2BA0D 2X7IA 3CDJA 1MG7A 1Y4SA 1HNXI 3LPSA 3UHMA 3J80Q 5K36E 4LCGA 4JI8I 5C0XE 4ED4A 4OKGA
chains in the Genus database with same CATH topology
4LPFA 1RHYA 5DNLA 5EL9A 4QNKA 2AE8A 4QNJA 5ELWA 4MU1A 4LOMA 5EKWA 4MU0A 2F1DA 4GQUA 4MU4A 4MU3A 5DNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LPF A;  1RHY A;  5DNL A;  5EL9 A;  4QNK A;  2AE8 A;  4QNJ A;  5ELW A;  4MU1 A;  4LOM A;  5EKW A;  4MU0 A;  2F1D A;  4GQU A;  4MU4 A;  4MU3 A;  5DNX A; 
#chains in the Genus database with same CATH topology
 1RHY A;  1S16 A;  2X36 A;  4BA1 B;  4B3M E;  4FN5 A;  3DD6 A;  4HY1 A;  4U3D A;  2O1T A;  4JI0 I;  2BM1 A;  3WU4 A;  2UXC I;  2VQE E;  4PRV A;  3ZZT A;  2C38 B;  2C39 B;  4LPF A;  1OJ4 A;  3D4J A;  2UXB I;  2PO1 A;  1Y60 A;  3GLL A;  2V2Q A;  1ZXM A;  2C39 A;  3LTO A;  3J80 C;  4DR3 I;  4LFB I;  2ZBK B;  3L7Z B;  5JEA F;  1EA6 A;  3M6A A;  5DRQ A;  3H4L A;  4GKJ E;  1Z0E A;  2Z5C B;  3KRN A;  1XNQ I;  3M85 D;  4DR5 E;  4DV3 E;  2AE8 A;  4DPX A;  2Z5C A;  4DR4 E;  1Z5A A;  4DR7 I;  4DPW A;  1H7U A;  4OZE A;  3WU6 A;  2O1W A;  4IZJ A;  5LMN I;  1Y5Y A;  1HNZ E;  4R1F A;  4IFD F;  2NN6 A;  4DV1 I;  4FW7 A;  2Q2E B;  2NN6 D;  3WU3 A;  2PO2 A;  2LJP A;  4DXL A;  5LMU I;  4X66 E;  3V5R A;  4PU9 A;  3M7N D;  4FW6 A;  2VF3 A;  3PS2 A;  2V8P A;  2XEX A;  3CWV A;  3QT7 A;  4AIM A;  2BA1 G;  2OI2 A;  3J81 Q;  1YHC A;  3GME A;  2BA0 G;  2V34 A;  2J65 A;  5IT9 Q;  5A2Q C;  4Z7Y A;  2CZ9 A;  1HR0 E;  1B63 A;  3HJC A;  4B3M I;  4DUZ E;  2PO0 B;  4JI0 E;  4LFA E;  2VQE I;  5JEA B;  3HKM A;  1EI1 A;  4QNK A;  2CGE A;  5K36 A;  4AID A;  3T1H E;  2UU9 E;  4LF9 E;  3PRY A;  5C0X A;  4DR3 E;  3JAM C;  1FJG E;  5K36 D;  3J81 C;  5C0X D;  2PNL A;  1NZ0 A;  2O3Z A;  2JE6 A;  5IT9 C;  4P52 A;  4LF7 E;  2HKJ A;  2DEJ A;  1BKN A;  4JI4 E;  1Z0G A;  1KKH A;  4GKJ I;  4IFD B;  3ZKD A;  3K85 A;  4USM A;  4I3H A;  4DV3 I;  4AM3 A;  4IFD A;  4DR4 I;  4DV0 E;  4MQY A;  3M85 G;  1UEK A;  1USU A;  1HNZ I;  4DU8 A;  1U2R A;  4DV7 E;  1OYS A;  1USV A;  4HAC B;  4URL A;  3OTO E;  2DEI A;  4EMD A;  3T1Y E;  4X66 I;  4RPF A;  4DU7 A;  4B3R E;  2O1U A;  5JEA E;  5DNL A;  2J7K A;  1HR0 I;  1N36 E;  1UDN A;  1H73 A;  2HKE A;  3P3G A;  4J3D A;  1R6L A;  4DUZ I;  4LFA I;  1N0V C;  4BA1 A;  1IBM I;  3PYE A;  2NPF A;  3Q6N A;  4PRX A;  3Q6M A;  2WNR B;  3QT8 A;  1Z5B A;  3HUL A;  4DPU A;  2C38 A;  3T1H I;  2UU9 I;  4LF9 I;  4IFD E;  4NXM E;  1FJG I;  1H7S A;  4LF5 E;  4JI6 E;  2UUB E;  4LF7 I;  4DUY E;  2JEB B;  2Z5E A;  2GQ0 A;  5FWK A;  3ZZ0 A;  3PS1 A;  4JI4 I;  5DRR A;  4FW4 A;  4KHP E;  2IOQ A;  3K17 A;  2HK3 A;  1YH8 A;  3L7Z A;  4P7A A;  4X62 E;  4MYU A;  4OX9 E;  5GME A;  1QZR A;  1OYP A;  1Y6Z A;  2F1D A;  5DNX A;  2V2V A;  3PS3 A;  1FNM A;  2EFG A;  3B8H A;  3P06 A;  4YHH I;  5EKW A;  4YY3 E;  4DV0 I;  4FWH A;  4IZJ D;  5IWA E;  1XMQ E;  2JEA B;  4DR6 I;  1HK7 A;  4DV7 I;  2ZIT A;  3OTO I;  1DAR A;  4LF8 E;  3U1K A;  4OO1 F;  1UDO A;  2GO4 A;  1ZM4 A;  4NXN E;  3T1Y I;  2E1R A;  4DPT A;  1B62 A;  4DV5 I;  5C0X C;  4UTG A;  4B3R I;  3GON A;  1I94 E;  2UXD E;  5LL6 R;  1A6F A;  1HNW E;  1KVK A;  2F4V E;  1MX0 A;  4AQY E;  4OO1 C;  1N36 I;  3J7A M;  2A2D A;  1N0U A;  4MU0 A;  1ELO A;  1IBM E;  4FW5 A;  1ZM2 A;  4Z7C A;  4X64 E;  4DV2 E;  1IBL E;  2PO0 A;  2HHH I;  4DR1 E;  4JYA E;  4X65 E;  1MU5 A;  5FLX Q;  5JEA A;  4NXM I;  2Z5B B;  5JEA D;  4HYM A;  4LF5 I;  4JI6 I;  1XNR I;  3ZZU A;  5BR8 I;  2UUB I;  2WP8 B;  4KQV A;  4DUY I;  4LOM A;  4DV6 E;  1IBK I;  4LFC E;  4B3T E;  1Z0T A;  4KHP I;  4X62 I;  4OX9 I;  4IS9 A;  1N33 E;  1E3P A;  2C37 B;  3NZK A;  4YHH E;  2VES A;  4OO1 B;  4IFD D;  1ZXN A;  1FWK A;  2IER A;  4ISA A;  4YY3 I;  2CVE A;  4JI1 E;  3QT5 A;  1S4E A;  2C37 A;  1WUU A;  5IWA I;  4DR6 E;  1XMQ I;  4DV4 E;  3PYF A;  1J5E E;  4NBQ A;  1H72 C;  4FWG A;  4N3O A;  2ZM6 I;  4LF8 I;  3B78 A;  5L3J A;  4HAC A;  1NHH A;  4NXN I;  5ELW A;  4DV5 E;  4MU1 A;  4JI5 E;  4JI2 E;  3Q1Q A;  4MU4 A;  1KIJ A;  1OYR A;  1I94 I;  4LCF A;  2UXD I;  4K0K E;  3M7N G;  1HNW I;  2F4V I;  1Z59 A;  2VQF I;  4AQY I;  2R42 A;  1E3H A;  4GKK I;  2NN6 F;  2WW4 A;  4XTJ A;  1Z0C A;  4X64 I;  1IBL I;  4DV2 I;  2HHH E;  3QT6 A;  4M1K A;  1UDS A;  4DR1 I;  4JYA I;  4X65 I;  3CDI A;  4DR2 E;  2UUC E;  5EL9 A;  1H74 A;  1Z0V A;  2BR2 B;  4WUB A;  2WNR A;  4JI3 E;  4UT4 A;  1XNR E;  5BR8 E;  3GCM A;  2BR2 A;  2NN6 C;  4OO1 E;  1IBK E;  1NHJ A;  1XMO E;  2BV3 A;  4MU3 A;  4DV6 I;  4LFC I;  4B3T I;  2PO1 B;  2JEB A;  3ZM7 A;  2PNM A;  4B3S E;  2IOP A;  4BA2 B;  1N33 I;  3H1C A;  1K47 A;  4WUD A;  1R6M A;  4BA2 A;  4JI1 I;  5K36 F;  2R3V A;  4JI7 E;  5C0X F;  4GQU A;  4DPY A;  1N32 E;  4DV4 I;  1J5E I;  3K1J A;  2GO3 A;  5DRO A;  2ZM6 E;  2JEA A;  3B4T A;  2E5L E;  3P3E A;  4IZK B;  1Z0W A;  4LF4 E;  2HFS A;  4IZJ B;  1P42 A;  5GMD A;  4JI5 I;  4JI2 I;  5K36 C;  2NN6 B;  4IZK A;  5JEA C;  1VIS A;  5A2Q Q;  4JV5 I;  2PO2 B;  2IES A;  1FKA E;  4K0K I;  2VQF E;  2HK2 A;  2BM0 A;  4GKK E;  4USK A;  1RRE A;  1N34 E;  4LF6 E;  4ZVI A;  2UUA E;  2V2Z A;  3PYD A;  3F0N A;  1HNX E;  5DRP A;  1PVG A;  2JT2 A;  4IFD C;  3JAM Q;  4DR2 I;  4JI8 E;  2UUC I;  1Z5C A;  2PNZ B;  4JI3 I;  4QNJ A;  4LCH A;  2Z5B A;  2PNZ A;  1XMO I;  2UXC E;  3WU5 A;  2WP8 A;  5K36 B;  5C0X B;  4FW3 A;  3V2U C;  1NHI A;  4FWD A;  4B3S I;  2UXB E;  1XHK A;  1PIE A;  2AJ4 A;  2O1V A;  2JE6 B;  1PKP A;  5FLX C;  1ZM9 A;  3B82 A;  3U1Y A;  4JG4 A;  4LFB E;  1FWL A;  1XXE A;  1UDQ A;  4U3B A;  3PYG A;  4OO1 A;  3P76 A;  4JI7 I;  2A2C A;  3ZKB A;  1N32 I;  2NN6 E;  4OO1 D;  1KTV A;  4MDT A;  1FI4 A;  1XNQ E;  2CG9 A;  2E5L I;  1VI7 A;  4DR5 I;  4LF4 I;  2HFU A;  1ZM3 A;  4DR7 E;  1RR9 A;  2GS8 A;  4WUC A;  1Z0B A;  5LMN E;  1Y4U A;  4FW9 A;  4JV5 E;  4HXZ A;  4MYT A;  4DV1 E;  3LNU A;  1D6T A;  3J7A G;  5LMU E;  2BA1 D;  1N34 I;  4LF6 I;  3P3C A;  2UUA I;  2BA0 D;  2X7I A;  3CDJ A;  1MG7 A;  1Y4S A;  1HNX I;  3LPS A;  3UHM A;  3J80 Q;  5K36 E;  4LCG A;  4JI8 I;  5C0X E;  4ED4 A;  4OKG A; 
#chains in the Genus database with same CATH homology
 4LPF A;  1RHY A;  5DNL A;  5EL9 A;  4QNK A;  2AE8 A;  4QNJ A;  5ELW A;  4MU1 A;  4LOM A;  5EKW A;  4MU0 A;  2F1D A;  4GQU A;  4MU4 A;  4MU3 A;  5DNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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