2J65A

Structure of lpxc from aquifex aeolicus in complex with udp
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
267
structure length
267
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
publication title The Nucleotide-Binding Site of Aquifex Aeolicus Lpxc.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 92
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2006-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 2j65A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 2j65A02
2GO3A 5DRQA 1XXEA 3P3EA 3NZKA 3PS2A 3U1YA 3PS1A 3UHMA 4FW3A 4OZEA 1YH8A 4FW4A 3P3CA 4ISAA 4LCFA 4MQYA 1YHCA 4U3BA 2JT2A 4FW7A 2GO4A 2O3ZA 3P76A 3P3GA 2J65A 4FW6A 4OKGA 4FW5A 2VESA 4J3DA 5DRRA 5DRPA 2IERA 2IESA 1P42A 5DROA 4IS9A 4LCGA 3PS3A 4MDTA 4LCHA 4U3DA
chains in the Genus database with same CATH superfamily
3J80Q 3KRNA 2BM1A 2PNZB 2Z5CB 3ZKDA 3HKMA 4JV5I 1OJ4A 4DU8A 3GMEA 2AJ4A 2PO0B 2V2QA 1XMOE 2NN6C 2V8PA 4AM3A 2DEJA 1HNWE 4DV5E 5C0XA 4FW5A 4J3DA 4ED4A 2E1RA 4FWGA 5JEAD 4OO1E 4KHPE 4DPUA 3NZKA 3H1CA 4B3SE 2IOPA 2XEXA 4BA1A 2HKEA 4FW3A 4IFDB 3L7ZB 5K36C 1VI7A 2HK2A 1HNWI 1S16A 3PYEA 1PKPA 4DV5I 2O1TA 4IFDF 4QNKA 4LF7E 2V34A 4X65E 1KKHA 3P76A 2C39B 4EMDA 4B3MI 1VISA 2J65A 2ZBKB 4DR2E 2CVEA 2R3VA 4WUDA 4KHPI 4DV2E 1ELOA 2PNMA 4B3SI 4DPXA 2GO3A 3P3EA 5FLXC 3M85D 4MU1A 4WUCA 1ZXMA 4DR1E 1Z0CA 1OYSA 1ZM3A 1B62A 3J7AM 4LF7I 4X65I 3B78A 2HHHE 5JEAB 3QT6A 4DR2I 4MQYA 4HACA 1S4EA 5K36A 2O3ZA 1NHIA 4DV6E 1Z0VA 4DV2I 1H72C 5JEAF 4DUYE 4DR6E 3GLLA 4IS9A 4N3OA 4DR1I 2F4VI 4IZKA 4IFDE 4FWDA 5BR8E 5C0XD 2PO2A 4LFAE 2HHHI 2VQEE 4DV1E 5A2QQ 1NHJA 3Q1QA 4GKKE 2JT2A 4FW7A 4LF8I 4B3RE 4DR6I 4B3TE 3V5RA 3WU3A 2V2ZA 4HY1A 1IBME 5L3JA 1P42A 1HNZE 3DD6A 5BR8I 4LCGA 4LFAI 4MDTA 2VQEI 4DV1I 4FWHA 5DNXA 3PS1A 2X36A 4GKKI 2NN6D 4DV4E 3WU5A 5LL6R 3QT5A 4B3TI 1I94I 3T1YE 1H7SA 1IBMI 1N32E 5C0XB 2BA0G 2HFUA 1DARA 2HKJA 1PIEA 2VESA 2Z5BB 2OI2A 3LNUA 4JI6E 2IERA 5C0XF 4QNJA 3WU6A 1UDNA 4FN5A 1HR0E 3J81Q 2AE8A 4DV4I 5K36D 4LF5E 2PO1A 1H7UA 1Y6ZA 3PS2A 3PYDA 2VF3A 3T1YI 1N32I 4OZEA 4DV3E 2BA1D 2UUBE 3F0NA 2WNRA 3B8HA 1UDSA 4JI6I 3GCMA 4NBQA 1Y4SA 2O1VA 2NN6B 4DV7E 1HR0I 4DPYA 1N33E 4LF5I 4B3ME 2NN6F 1RR9A 2CZ9A 4NXME 4JI3E 5LMNE 2BM0A 2GQ0A 4DV3I 2JEAB 2C38A 4OO1A 2UUBI 4BA2A 3ZM7A 1XNQE 2BA0D 1IBLE 4JI5E 4LF9I 4FW4A 4DUZE 2ZITA 1Z59A 2O1WA 4DV7I 5K36B 1N33I 1FWLA 3B4TA 4NXMI 1Y60A 2WW4A 5K36F 1D6TA 4PRXA 3PRYA 4JI3I 4JI1E 5LMNI 4IZKB 3U1KA 4M1KA 3PS3A 2NPFA 4DPWA 2ZM6E 1KVKA 1XNQI 1IBLI 4JI5I 1N36E 2PO2B 4LF4E 4GQUA 2PNZA 4HXZA 4DUZI 2F4VE 1USUA 3PYFA 4USMA 1ZM9A 2JEBB 3PYGA 1Z0WA 1RREA 4FW9A 4JI1I 2NN6E 3CDIA 2HFSA 3P3GA 4OKGA 2ZM6I 1Z0TA 3V2UC 4DR3E 4NXNE 2JE6A 4DXLA 1N36I 4LF8E 4LFCE 4LF4I 1EA6A 4JI8E 2BR2A 4X62E 1N0VC 1Z5AA 2A2CA 3U1YA 3Q6MA 1A6FA 4IFDA 3L7ZA 3CWVA 5K36E 4KQVA 2CGEA 4JI4E 4MYTA 1MX0A 2DEIA 4Z7YA 4DR3I 4NXNI 2GO4A 4LFCI 4OO1D 2C39A 2J7KA 3LPSA 4JI8I 1I94E 4X62I 2X7IA 1OYPA 4LCHA 4U3DA 2PO1B 4XTJA 3K85A 4URLA 4YHHE 1FJGE 4JI4I 1E3HA 2WNRB 5JEAE 4LPFA 1XHKA 1Z0BA 3JAMC 1XMQE 4OX9E 3H4LA 1EI1A 2CG9A 1OYRA 4P7AA 4USKA 5IT9C 1Z0EA 2Q2EB 1Y5YA 1RHYA 2HK3A 3Q6NA 5DROA 5IWAI 1R6MA 2Z5EA 1MG7A 3LTOA 4YHHI 4OO1C 1FJGI 3OTOE 1XNRI 4WUBA 2F1DA 2A2DA 3T1HE 1Z5BA 4BA2B 3HJCA 4BA1B 4MU3A 1XMQI 4JI0E 4OX9I 4YY3E 1YH8A 4OO1F 4ISAA 1Y4UA 3J80C 4LOMA 1E3PA 4LF9E 1NZ0A 1ZM2A 3OTOI 1FI4A 5ELWA 5DRPA 3T1HI 5LMUE 4RPFA 1MU5A 4JI0I 4YY3I 2UXCE 4PU9A 3ZZTA 2WP8A 3K17A 1PVGA 1N0UA 5FWKA 3M85G 2O1UA 4I3HA 4IZJA 4LCFA 1U2RA 1YHCA 1ZM4A 4HACB 5C0XE 4ZVIA 5LMUI 4LF6E 1H73A 1Z0GA 5EL9A 4FW6A 2JE6B 3QT8A 2Z5BA 3M7NG 2IESA 2C37A 2UXCI 2BR2B 3P06A 1KTVA 5GMDA 1XXEA 4IFDC 4JYAE 4LFBE 4P52A 3WU4A 3D4JA 1XMOI 1FKAE 4AQYE 1KIJA 2Z5CA 4HYMA 3P3CA 4LF6I 1J5EE 2IOQA 1HK7A 3HULA 4U3BA 4X66E 4DU7A 4UT4A 2E5LE 1UDOA 2PO0A 2UUAE 5FLXQ 2NN6A 5DRRA 1BKNA 4MU0A 4PRVA 4JYAI 4K0KE 1H74A 4LFBI 4JI2E 2UXBE 2GS8A 1UEKA 4AQYI 4DPTA 1QZRA 1UDQA 2JEAA 1J5EI 2EFGA 5JEAC 4X66I 2E5LI 1N34E 2UUCE 1HNXE 3ZZ0A 4DR5E 2UUAI 2V2VA 3B82A 3M7ND 4GKJE 3CDJA 1FNMA 1IBKE 4K0KI 1NHHA 4JI2I 4DR7E 2UXBI 5A2QC 3ZZUA 3QT7A 2R42A 4IZJD 1FWKA 1WUUA 4MYUA 2UXDE 1K47A 4Z7CA 4X64E 1N34I 1ZXNA 1HNXI 4DR5I 2UUCI 5IWAE 4AIDA 4GKJI 1XNRE 4DV6I 1IBKI 5DNLA 2PNLA 4DUYI 4R1FA 2JEBA 5EKWA 2VQFE 3J7AG 4DR7I 5JEAA 3GONA 2BA1G 3M6AA 2UU9E 1Z5CA 4JI7E 2BV3A 4DV0E 2UXDI 1USVA 2LJPA 3ZKBA 4X64I 4DR4E 3JAMQ 4AIMA 5DRQA 2C38B 4MU4A 4OO1B 2VQFI 2WP8B 3UHMA 5IT9Q 4B3RI 4IZJB 5C0XC 3J81C 2UU9I 4JI7I 4JV5E 4DV0I 1HNZI 5GMEA 4UTGA 4DR4I 2C37B 4IFDD 3K1JA 1B63A 1R6LA 4JG4A
chains in the Genus database with same CATH topology
2GO3A 5DRQA 1XXEA 3P3EA 3NZKA 3PS2A 3U1YA 3PS1A 3UHMA 4FW3A 4OZEA 1YH8A 4FW4A 3P3CA 4ISAA 4LCFA 4MQYA 1YHCA 4U3BA 2JT2A 4FW7A 2GO4A 2O3ZA 3P76A 3P3GA 2J65A 4FW6A 4OKGA 4FW5A 2VESA 4J3DA 5DRRA 5DRPA 2IERA 2IESA 1P42A 5DROA 4IS9A 4LCGA 3PS3A 4MDTA 4LCHA 4U3DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GO3 A;  5DRQ A;  1XXE A;  3P3E A;  3NZK A;  3PS2 A;  3U1Y A;  3PS1 A;  3UHM A;  4FW3 A;  4OZE A;  1YH8 A;  4FW4 A;  3P3C A;  4ISA A;  4LCF A;  4MQY A;  1YHC A;  4U3B A;  2JT2 A;  4FW7 A;  2GO4 A;  2O3Z A;  3P76 A;  3P3G A;  2J65 A;  4FW6 A;  4OKG A;  4FW5 A;  2VES A;  4J3D A;  5DRR A;  5DRP A;  2IER A;  2IES A;  1P42 A;  5DRO A;  4IS9 A;  4LCG A;  3PS3 A;  4MDT A;  4LCH A;  4U3D A; 
#chains in the Genus database with same CATH topology
 3J80 Q;  3KRN A;  2BM1 A;  2PNZ B;  2Z5C B;  3ZKD A;  3HKM A;  4JV5 I;  1OJ4 A;  4DU8 A;  3GME A;  2AJ4 A;  2PO0 B;  2V2Q A;  1XMO E;  2NN6 C;  2V8P A;  4AM3 A;  2DEJ A;  1HNW E;  4DV5 E;  5C0X A;  4FW5 A;  4J3D A;  4ED4 A;  2E1R A;  4FWG A;  5JEA D;  4OO1 E;  4KHP E;  4DPU A;  3NZK A;  3H1C A;  4B3S E;  2IOP A;  2XEX A;  4BA1 A;  2HKE A;  4FW3 A;  4IFD B;  3L7Z B;  5K36 C;  1VI7 A;  2HK2 A;  1HNW I;  1S16 A;  3PYE A;  1PKP A;  4DV5 I;  2O1T A;  4IFD F;  4QNK A;  4LF7 E;  2V34 A;  4X65 E;  1KKH A;  3P76 A;  2C39 B;  4EMD A;  4B3M I;  1VIS A;  2J65 A;  2ZBK B;  4DR2 E;  2CVE A;  2R3V A;  4WUD A;  4KHP I;  4DV2 E;  1ELO A;  2PNM A;  4B3S I;  4DPX A;  2GO3 A;  3P3E A;  5FLX C;  3M85 D;  4MU1 A;  4WUC A;  1ZXM A;  4DR1 E;  1Z0C A;  1OYS A;  1ZM3 A;  1B62 A;  3J7A M;  4LF7 I;  4X65 I;  3B78 A;  2HHH E;  5JEA B;  3QT6 A;  4DR2 I;  4MQY A;  4HAC A;  1S4E A;  5K36 A;  2O3Z A;  1NHI A;  4DV6 E;  1Z0V A;  4DV2 I;  1H72 C;  5JEA F;  4DUY E;  4DR6 E;  3GLL A;  4IS9 A;  4N3O A;  4DR1 I;  2F4V I;  4IZK A;  4IFD E;  4FWD A;  5BR8 E;  5C0X D;  2PO2 A;  4LFA E;  2HHH I;  2VQE E;  4DV1 E;  5A2Q Q;  1NHJ A;  3Q1Q A;  4GKK E;  2JT2 A;  4FW7 A;  4LF8 I;  4B3R E;  4DR6 I;  4B3T E;  3V5R A;  3WU3 A;  2V2Z A;  4HY1 A;  1IBM E;  5L3J A;  1P42 A;  1HNZ E;  3DD6 A;  5BR8 I;  4LCG A;  4LFA I;  4MDT A;  2VQE I;  4DV1 I;  4FWH A;  5DNX A;  3PS1 A;  2X36 A;  4GKK I;  2NN6 D;  4DV4 E;  3WU5 A;  5LL6 R;  3QT5 A;  4B3T I;  1I94 I;  3T1Y E;  1H7S A;  1IBM I;  1N32 E;  5C0X B;  2BA0 G;  2HFU A;  1DAR A;  2HKJ A;  1PIE A;  2VES A;  2Z5B B;  2OI2 A;  3LNU A;  4JI6 E;  2IER A;  5C0X F;  4QNJ A;  3WU6 A;  1UDN A;  4FN5 A;  1HR0 E;  3J81 Q;  2AE8 A;  4DV4 I;  5K36 D;  4LF5 E;  2PO1 A;  1H7U A;  1Y6Z A;  3PS2 A;  3PYD A;  2VF3 A;  3T1Y I;  1N32 I;  4OZE A;  4DV3 E;  2BA1 D;  2UUB E;  3F0N A;  2WNR A;  3B8H A;  1UDS A;  4JI6 I;  3GCM A;  4NBQ A;  1Y4S A;  2O1V A;  2NN6 B;  4DV7 E;  1HR0 I;  4DPY A;  1N33 E;  4LF5 I;  4B3M E;  2NN6 F;  1RR9 A;  2CZ9 A;  4NXM E;  4JI3 E;  5LMN E;  2BM0 A;  2GQ0 A;  4DV3 I;  2JEA B;  2C38 A;  4OO1 A;  2UUB I;  4BA2 A;  3ZM7 A;  1XNQ E;  2BA0 D;  1IBL E;  4JI5 E;  4LF9 I;  4FW4 A;  4DUZ E;  2ZIT A;  1Z59 A;  2O1W A;  4DV7 I;  5K36 B;  1N33 I;  1FWL A;  3B4T A;  4NXM I;  1Y60 A;  2WW4 A;  5K36 F;  1D6T A;  4PRX A;  3PRY A;  4JI3 I;  4JI1 E;  5LMN I;  4IZK B;  3U1K A;  4M1K A;  3PS3 A;  2NPF A;  4DPW A;  2ZM6 E;  1KVK A;  1XNQ I;  1IBL I;  4JI5 I;  1N36 E;  2PO2 B;  4LF4 E;  4GQU A;  2PNZ A;  4HXZ A;  4DUZ I;  2F4V E;  1USU A;  3PYF A;  4USM A;  1ZM9 A;  2JEB B;  3PYG A;  1Z0W A;  1RRE A;  4FW9 A;  4JI1 I;  2NN6 E;  3CDI A;  2HFS A;  3P3G A;  4OKG A;  2ZM6 I;  1Z0T A;  3V2U C;  4DR3 E;  4NXN E;  2JE6 A;  4DXL A;  1N36 I;  4LF8 E;  4LFC E;  4LF4 I;  1EA6 A;  4JI8 E;  2BR2 A;  4X62 E;  1N0V C;  1Z5A A;  2A2C A;  3U1Y A;  3Q6M A;  1A6F A;  4IFD A;  3L7Z A;  3CWV A;  5K36 E;  4KQV A;  2CGE A;  4JI4 E;  4MYT A;  1MX0 A;  2DEI A;  4Z7Y A;  4DR3 I;  4NXN I;  2GO4 A;  4LFC I;  4OO1 D;  2C39 A;  2J7K A;  3LPS A;  4JI8 I;  1I94 E;  4X62 I;  2X7I A;  1OYP A;  4LCH A;  4U3D A;  2PO1 B;  4XTJ A;  3K85 A;  4URL A;  4YHH E;  1FJG E;  4JI4 I;  1E3H A;  2WNR B;  5JEA E;  4LPF A;  1XHK A;  1Z0B A;  3JAM C;  1XMQ E;  4OX9 E;  3H4L A;  1EI1 A;  2CG9 A;  1OYR A;  4P7A A;  4USK A;  5IT9 C;  1Z0E A;  2Q2E B;  1Y5Y A;  1RHY A;  2HK3 A;  3Q6N A;  5DRO A;  5IWA I;  1R6M A;  2Z5E A;  1MG7 A;  3LTO A;  4YHH I;  4OO1 C;  1FJG I;  3OTO E;  1XNR I;  4WUB A;  2F1D A;  2A2D A;  3T1H E;  1Z5B A;  4BA2 B;  3HJC A;  4BA1 B;  4MU3 A;  1XMQ I;  4JI0 E;  4OX9 I;  4YY3 E;  1YH8 A;  4OO1 F;  4ISA A;  1Y4U A;  3J80 C;  4LOM A;  1E3P A;  4LF9 E;  1NZ0 A;  1ZM2 A;  3OTO I;  1FI4 A;  5ELW A;  5DRP A;  3T1H I;  5LMU E;  4RPF A;  1MU5 A;  4JI0 I;  4YY3 I;  2UXC E;  4PU9 A;  3ZZT A;  2WP8 A;  3K17 A;  1PVG A;  1N0U A;  5FWK A;  3M85 G;  2O1U A;  4I3H A;  4IZJ A;  4LCF A;  1U2R A;  1YHC A;  1ZM4 A;  4HAC B;  5C0X E;  4ZVI A;  5LMU I;  4LF6 E;  1H73 A;  1Z0G A;  5EL9 A;  4FW6 A;  2JE6 B;  3QT8 A;  2Z5B A;  3M7N G;  2IES A;  2C37 A;  2UXC I;  2BR2 B;  3P06 A;  1KTV A;  5GMD A;  1XXE A;  4IFD C;  4JYA E;  4LFB E;  4P52 A;  3WU4 A;  3D4J A;  1XMO I;  1FKA E;  4AQY E;  1KIJ A;  2Z5C A;  4HYM A;  3P3C A;  4LF6 I;  1J5E E;  2IOQ A;  1HK7 A;  3HUL A;  4U3B A;  4X66 E;  4DU7 A;  4UT4 A;  2E5L E;  1UDO A;  2PO0 A;  2UUA E;  5FLX Q;  2NN6 A;  5DRR A;  1BKN A;  4MU0 A;  4PRV A;  4JYA I;  4K0K E;  1H74 A;  4LFB I;  4JI2 E;  2UXB E;  2GS8 A;  1UEK A;  4AQY I;  4DPT A;  1QZR A;  1UDQ A;  2JEA A;  1J5E I;  2EFG A;  5JEA C;  4X66 I;  2E5L I;  1N34 E;  2UUC E;  1HNX E;  3ZZ0 A;  4DR5 E;  2UUA I;  2V2V A;  3B82 A;  3M7N D;  4GKJ E;  3CDJ A;  1FNM A;  1IBK E;  4K0K I;  1NHH A;  4JI2 I;  4DR7 E;  2UXB I;  5A2Q C;  3ZZU A;  3QT7 A;  2R42 A;  4IZJ D;  1FWK A;  1WUU A;  4MYU A;  2UXD E;  1K47 A;  4Z7C A;  4X64 E;  1N34 I;  1ZXN A;  1HNX I;  4DR5 I;  2UUC I;  5IWA E;  4AID A;  4GKJ I;  1XNR E;  4DV6 I;  1IBK I;  5DNL A;  2PNL A;  4DUY I;  4R1F A;  2JEB A;  5EKW A;  2VQF E;  3J7A G;  4DR7 I;  5JEA A;  3GON A;  2BA1 G;  3M6A A;  2UU9 E;  1Z5C A;  4JI7 E;  2BV3 A;  4DV0 E;  2UXD I;  1USV A;  2LJP A;  3ZKB A;  4X64 I;  4DR4 E;  3JAM Q;  4AIM A;  5DRQ A;  2C38 B;  4MU4 A;  4OO1 B;  2VQF I;  2WP8 B;  3UHM A;  5IT9 Q;  4B3R I;  4IZJ B;  5C0X C;  3J81 C;  2UU9 I;  4JI7 I;  4JV5 E;  4DV0 I;  1HNZ I;  5GME A;  4UTG A;  4DR4 I;  2C37 B;  4IFD D;  3K1J A;  1B63 A;  1R6L A;  4JG4 A; 
#chains in the Genus database with same CATH homology
 2GO3 A;  5DRQ A;  1XXE A;  3P3E A;  3NZK A;  3PS2 A;  3U1Y A;  3PS1 A;  3UHM A;  4FW3 A;  4OZE A;  1YH8 A;  4FW4 A;  3P3C A;  4ISA A;  4LCF A;  4MQY A;  1YHC A;  4U3B A;  2JT2 A;  4FW7 A;  2GO4 A;  2O3Z A;  3P76 A;  3P3G A;  2J65 A;  4FW6 A;  4OKG A;  4FW5 A;  2VES A;  4J3D A;  5DRR A;  5DRP A;  2IER A;  2IES A;  1P42 A;  5DRO A;  4IS9 A;  4LCG A;  3PS3 A;  4MDT A;  4LCH A;  4U3D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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