2J65A

Structure of lpxc from aquifex aeolicus in complex with udp
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
267
structure length
267
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
publication title The Nucleotide-Binding Site of Aquifex Aeolicus Lpxc.
pubmed doi rcsb
source organism Aquifex aeolicus
molecule tags Hydrolase
total genus 92
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2006-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 2j65A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 2j65A02
5DRQA 1YHCA 1P42A 5DRPA 4FW6A 4U3DA 3P76A 4FW5A 3PS2A 2JT2A 1YH8A 3PS3A 3U1YA 4FW4A 4FW7A 2VESA 5DRRA 2GO3A 4MDTA 4ISAA 4J3DA 1XXEA 2IESA 4MQYA 3P3GA 3NZKA 5DROA 2O3ZA 4IS9A 4OKGA 4FW3A 2J65A 4OZEA 2IERA 4LCGA 3UHMA 2GO4A 3P3CA 3PS1A 4LCFA 4LCHA 4U3BA 3P3EA
chains in the Genus database with same CATH superfamily
3L7ZB 2ZM6I 1BKNA 2C38B 3P76A 5C0XB 4OO1A 1ZM4A 4JV5I 5LMNI 4IFDC 4Z7YA 4DV6I 3QT7A 4DV1I 1N34E 3L7ZA 3NZKA 3PYDA 3M7NG 4JYAI 4MYTA 5LL6R 4PU9A 5C0XA 4DR6I 2C39B 2NN6D 1R6MA 4LF8E 2ZM6E 4AQYI 4QNKA 4LOMA 4PRXA 5FLXQ 4YHHI 1P42A 1H7SA 5LMNE 4JV5E 4X62I 4OO1F 4DV6E 4FWDA 4DV1E 4LFCI 2C39A 4FWGA 4LF5I 2Q2EB 4JYAE 4DV2I 1HR0I 1XNQE 4DR7I 4B3RI 3CWVA 2UXBI 4Z7CA 2HKEA 2PO2B 5C0XF 4AQYE 1N32I 4YHHE 4MU3A 2R42A 1PVGA 2JE6B 1FNMA 1Y6ZA 4X62E 1Y4SA 5A2QC 2VQFI 1IBMI 4JG4A 4KQVA 4HACB 4FW9A 4LF5E 4OO1E 1D6TA 2HK2A 2PO2A 1WUUA 4IFDB 1B63A 2BR2B 4MYUA 1KIJA 1RHYA 1HK7A 2UXBE 4GKJE 4DV5I 4X65E 4DV3E 4LF9E 1ZXMA 1N32E 2V2VA 5DROA 2O1UA 3J7AM 3LPSA 3HKMA 2VQFE 4JI8E 4IFDA 4DPWA 4X64E 2BR2A 2VQEE 2CG9A 1PKPA 1IBKI 1H72C 1DARA 2IOQA 2V8PA 5EKWA 2V2QA 3B4TA 3WU3A 5K36C 4FW7A 4DR1I 2JEBB 4DUZI 4MQYA 4LF7I 4X66I 2X36A 3HJCA 1HNZI 2NN6A 3J7AG 5BR8E 4ED4A 4DPTA 4IFDF 5FLXC 3PS1A 3OTOI 1FKAE 1IBKE 2DEJA 4NXME 2JEBA 3ZZTA 1E3HA 1EA6A 4DR1E 1MX0A 1YH8A 2WNRB 1ELOA 4FN5A 1FI4A 2GO3A 4X66E 4DV0I 1N0VC 4AIMA 4HYMA 5JEAD 2NN6F 4IS9A 1Z0WA 1OYSA 4KHPE 2WNRA 2XEXA 2HK3A 1OJ4A 2V34A 4B3MI 1Z0VA 4QNJA 4LF8I 5JEAC 3ZZUA 5LMUE 3LNUA 3PS2A 3T1YE 4DV0E 5K36B 5DRRA 1Z0EA 2Z5BB 1Z5CA 5FWKA 2WP8B 1KKHA 1XNQI 2C38A 1H74A 2NN6E 3ZKBA 2HHHI 4B3ME 4JI0E 2PO0B 2PO1B 3UHMA 4JI6E 4YY3I 3K17A 3P3EA 2Z5BA 3DD6A 2WP8A 4DPYA 1J5EE 3B8HA 1U2RA 2GQ0A 1UDSA 2A2DA 4MU4A 4XTJA 3P3GA 2HHHE 2UUAE 5EL9A 4DPXA 4GKJI 4X65I 4DV3I 1NHJA 1XNRE 4YY3E 4LF9I 2CVEA 1H73A 1NHHA 2GO4A 4AIDA 3J81Q 2BM1A 2VF3A 2BV3A 1KTVA 5JEAB 3PYGA 4JI8I 1OYRA 1HNXI 2CGEA 4X64I 3B82A 2VQEI 1XMOI 3F0NA 3PS3A 4DU7A 2PNZB 4LFAE 4WUCA 2F1DA 3Q6NA 3ZZ0A 1A6FA 1ZXNA 1UDOA 2JE6A 5L3JA 1Z0GA 4DV7E 1USVA 1Z0BA 2O3ZA 4IZJD 2NPFA 4HACA 5C0XE 2JEAB 4PRVA 2PNZA 3WU5A 3K1JA 1HNXE 5K36D 5BR8I 4IZKB 1Z0CA 1XMOE 2E5LI 1S16A 4DU8A 4B3SI 4GQUA 4USKA 4NXMI 2BA0D 5GMDA 4JI4I 4FW4A 3T1HE 1Y60A 2DEIA 2C37B 1MU5A 3Q6MA 4J3DA 4OO1C 4OX9I 4IZKA 3QT8A 4DV4I 3PRYA 3CDJA 1PIEA 1E3PA 4I3HA 3U1KA 3Q1QA 1RR9A 4LCGA 3P3CA 1UDNA 4LCFA 3J80Q 2E5LE 5GMEA 4KHPI 2IOPA 4B3SE 1ZM3A 4JI4E 1S4EA 4U3DA 5C0XC 1XHKA 5DNLA 4DUYI 1EI1A 3GCMA 1KVKA 5LMUI 4JI3I 4OX9E 4DV4E 3ZM7A 3T1YI 3CDIA 1XXEA 4UT4A 2OI2A 4DR4I 1ZM9A 4HY1A 1HNWE 3ZKDA 4GKKI 2UXCI 3J81C 4JI1I 4IFDE 2BM0A 1VI7A 2F4VE 4LCHA 3V5RA 1Z5AA 4EMDA 4JI0I 1YHCA 4DUYE 1USUA 4IZJB 4JI2I 1UDQA 4JI6I 4FW5A 5IWAI 1MG7A 1N33E 4K0KI 2PNLA 4JI3E 2JT2A 3V2UC 2Z5CB 1Z59A 1XMQI 4DR4E 2UU9I 4MDTA 1J5EI 2UUBE 4GKKE 4OO1B 2UXCE 4JI1E 2EFGA 4MU0A 4DR2E 4IZJA 2HFSA 4DR3E 3D4JA 4B3TE 2IERA 4USMA 2Z5CA 2UUAI 4JI2E 5K36A 1XNRI 5IWAE 4K0KE 5DRQA 2HFUA 4DPUA 1XMQE 4MU1A 2UU9E 2AE8A 4LF4E 3H4LA 2PO0A 1FJGI 2PO1A 4HXZA 2X7IA 1Z0TA 3GMEA 2V2ZA 2IESA 3M7ND 4LFAI 2O1WA 3QT5A 4FW3A 3H1CA 3J80C 1Y4UA 4P7AA 4DV7I 5K36F 5IT9Q 1VISA 4BA1B 4FW6A 2NN6C 2O1VA 3PYFA 4LPFA 2R3VA 1FJGE 3U1YA 3GONA 4WUBA 2VESA 1QZRA 2ZBKB 4DR6E 5ELWA 3T1HI 3HULA 4BA1A 1K47A 3P06A 3JAMQ 5JEAA 4AM3A 2PNMA 2CZ9A 4OZEA 4JI7I 5DNXA 1H7UA 5K36E 1I94I 3M6AA 4LFCE 2O1TA 4B3RE 4DV2E 1HR0E 4DR7E 4OO1D 2BA0G 4URLA 2JEAA 2GS8A 4NXNI 1IBLI 4P52A 3KRNA 4UTGA 4JI7E 5JEAF 2UUCI 1RREA 1FWKA 1I94E 1ZM2A 5C0XD 1IBME 4DXLA 3LTOA 3M85G 2E1RA 4N3OA 3M85D 4DR5I 1HNWI 2A2CA 4ZVIA 4LFBI 4JI5I 2Z5EA 5DRPA 2NN6B 2C37A 3K85A 3GLLA 2F4VI 4DV5E 2UXDI 4NXNE 1IBLE 2HKJA 4FWHA 1N33I 1N36I 2UUCE 1UEKA 4ISAA 3WU4A 4BA2B 2J7KA 5JEAE 2UUBI 1NZ0A 1Z5BA 4DR5E 4LFBE 4R1FA 1Y5YA 5IT9C 4JI5E 4NBQA 4DR2I 4DR3I 4B3TI 4LF6I 4U3BA 2UXDE 2AJ4A 3WU6A 2LJPA 5A2QQ 4BA2A 3QT6A 3B78A 4WUDA 4DUZE 1N36E 4RPFA 1R6LA 1B62A 1FWLA 2BA1G 1N0UA 2BA1D 4LF7E 3PYEA 1NHIA 2WW4A 2ZITA 4M1KA 1HNZE 3JAMC 4LF4I 3OTOE 4OKGA 2J65A 1N34I 4LF6E 1OYPA 4IFDD
chains in the Genus database with same CATH topology
5DRQA 1YHCA 1P42A 5DRPA 4FW6A 4U3DA 3P76A 4FW5A 3PS2A 2JT2A 1YH8A 3PS3A 3U1YA 4FW4A 4FW7A 2VESA 5DRRA 2GO3A 4MDTA 4ISAA 4J3DA 1XXEA 2IESA 4MQYA 3P3GA 3NZKA 5DROA 2O3ZA 4IS9A 4OKGA 4FW3A 2J65A 4OZEA 2IERA 4LCGA 3UHMA 2GO4A 3P3CA 3PS1A 4LCFA 4LCHA 4U3BA 3P3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DRQ A;  1YHC A;  1P42 A;  5DRP A;  4FW6 A;  4U3D A;  3P76 A;  4FW5 A;  3PS2 A;  2JT2 A;  1YH8 A;  3PS3 A;  3U1Y A;  4FW4 A;  4FW7 A;  2VES A;  5DRR A;  2GO3 A;  4MDT A;  4ISA A;  4J3D A;  1XXE A;  2IES A;  4MQY A;  3P3G A;  3NZK A;  5DRO A;  2O3Z A;  4IS9 A;  4OKG A;  4FW3 A;  2J65 A;  4OZE A;  2IER A;  4LCG A;  3UHM A;  2GO4 A;  3P3C A;  3PS1 A;  4LCF A;  4LCH A;  4U3B A;  3P3E A; 
#chains in the Genus database with same CATH topology
 3L7Z B;  2ZM6 I;  1BKN A;  2C38 B;  3P76 A;  5C0X B;  4OO1 A;  1ZM4 A;  4JV5 I;  5LMN I;  4IFD C;  4Z7Y A;  4DV6 I;  3QT7 A;  4DV1 I;  1N34 E;  3L7Z A;  3NZK A;  3PYD A;  3M7N G;  4JYA I;  4MYT A;  5LL6 R;  4PU9 A;  5C0X A;  4DR6 I;  2C39 B;  2NN6 D;  1R6M A;  4LF8 E;  2ZM6 E;  4AQY I;  4QNK A;  4LOM A;  4PRX A;  5FLX Q;  4YHH I;  1P42 A;  1H7S A;  5LMN E;  4JV5 E;  4X62 I;  4OO1 F;  4DV6 E;  4FWD A;  4DV1 E;  4LFC I;  2C39 A;  4FWG A;  4LF5 I;  2Q2E B;  4JYA E;  4DV2 I;  1HR0 I;  1XNQ E;  4DR7 I;  4B3R I;  3CWV A;  2UXB I;  4Z7C A;  2HKE A;  2PO2 B;  5C0X F;  4AQY E;  1N32 I;  4YHH E;  4MU3 A;  2R42 A;  1PVG A;  2JE6 B;  1FNM A;  1Y6Z A;  4X62 E;  1Y4S A;  5A2Q C;  2VQF I;  1IBM I;  4JG4 A;  4KQV A;  4HAC B;  4FW9 A;  4LF5 E;  4OO1 E;  1D6T A;  2HK2 A;  2PO2 A;  1WUU A;  4IFD B;  1B63 A;  2BR2 B;  4MYU A;  1KIJ A;  1RHY A;  1HK7 A;  2UXB E;  4GKJ E;  4DV5 I;  4X65 E;  4DV3 E;  4LF9 E;  1ZXM A;  1N32 E;  2V2V A;  5DRO A;  2O1U A;  3J7A M;  3LPS A;  3HKM A;  2VQF E;  4JI8 E;  4IFD A;  4DPW A;  4X64 E;  2BR2 A;  2VQE E;  2CG9 A;  1PKP A;  1IBK I;  1H72 C;  1DAR A;  2IOQ A;  2V8P A;  5EKW A;  2V2Q A;  3B4T A;  3WU3 A;  5K36 C;  4FW7 A;  4DR1 I;  2JEB B;  4DUZ I;  4MQY A;  4LF7 I;  4X66 I;  2X36 A;  3HJC A;  1HNZ I;  2NN6 A;  3J7A G;  5BR8 E;  4ED4 A;  4DPT A;  4IFD F;  5FLX C;  3PS1 A;  3OTO I;  1FKA E;  1IBK E;  2DEJ A;  4NXM E;  2JEB A;  3ZZT A;  1E3H A;  1EA6 A;  4DR1 E;  1MX0 A;  1YH8 A;  2WNR B;  1ELO A;  4FN5 A;  1FI4 A;  2GO3 A;  4X66 E;  4DV0 I;  1N0V C;  4AIM A;  4HYM A;  5JEA D;  2NN6 F;  4IS9 A;  1Z0W A;  1OYS A;  4KHP E;  2WNR A;  2XEX A;  2HK3 A;  1OJ4 A;  2V34 A;  4B3M I;  1Z0V A;  4QNJ A;  4LF8 I;  5JEA C;  3ZZU A;  5LMU E;  3LNU A;  3PS2 A;  3T1Y E;  4DV0 E;  5K36 B;  5DRR A;  1Z0E A;  2Z5B B;  1Z5C A;  5FWK A;  2WP8 B;  1KKH A;  1XNQ I;  2C38 A;  1H74 A;  2NN6 E;  3ZKB A;  2HHH I;  4B3M E;  4JI0 E;  2PO0 B;  2PO1 B;  3UHM A;  4JI6 E;  4YY3 I;  3K17 A;  3P3E A;  2Z5B A;  3DD6 A;  2WP8 A;  4DPY A;  1J5E E;  3B8H A;  1U2R A;  2GQ0 A;  1UDS A;  2A2D A;  4MU4 A;  4XTJ A;  3P3G A;  2HHH E;  2UUA E;  5EL9 A;  4DPX A;  4GKJ I;  4X65 I;  4DV3 I;  1NHJ A;  1XNR E;  4YY3 E;  4LF9 I;  2CVE A;  1H73 A;  1NHH A;  2GO4 A;  4AID A;  3J81 Q;  2BM1 A;  2VF3 A;  2BV3 A;  1KTV A;  5JEA B;  3PYG A;  4JI8 I;  1OYR A;  1HNX I;  2CGE A;  4X64 I;  3B82 A;  2VQE I;  1XMO I;  3F0N A;  3PS3 A;  4DU7 A;  2PNZ B;  4LFA E;  4WUC A;  2F1D A;  3Q6N A;  3ZZ0 A;  1A6F A;  1ZXN A;  1UDO A;  2JE6 A;  5L3J A;  1Z0G A;  4DV7 E;  1USV A;  1Z0B A;  2O3Z A;  4IZJ D;  2NPF A;  4HAC A;  5C0X E;  2JEA B;  4PRV A;  2PNZ A;  3WU5 A;  3K1J A;  1HNX E;  5K36 D;  5BR8 I;  4IZK B;  1Z0C A;  1XMO E;  2E5L I;  1S16 A;  4DU8 A;  4B3S I;  4GQU A;  4USK A;  4NXM I;  2BA0 D;  5GMD A;  4JI4 I;  4FW4 A;  3T1H E;  1Y60 A;  2DEI A;  2C37 B;  1MU5 A;  3Q6M A;  4J3D A;  4OO1 C;  4OX9 I;  4IZK A;  3QT8 A;  4DV4 I;  3PRY A;  3CDJ A;  1PIE A;  1E3P A;  4I3H A;  3U1K A;  3Q1Q A;  1RR9 A;  4LCG A;  3P3C A;  1UDN A;  4LCF A;  3J80 Q;  2E5L E;  5GME A;  4KHP I;  2IOP A;  4B3S E;  1ZM3 A;  4JI4 E;  1S4E A;  4U3D A;  5C0X C;  1XHK A;  5DNL A;  4DUY I;  1EI1 A;  3GCM A;  1KVK A;  5LMU I;  4JI3 I;  4OX9 E;  4DV4 E;  3ZM7 A;  3T1Y I;  3CDI A;  1XXE A;  4UT4 A;  2OI2 A;  4DR4 I;  1ZM9 A;  4HY1 A;  1HNW E;  3ZKD A;  4GKK I;  2UXC I;  3J81 C;  4JI1 I;  4IFD E;  2BM0 A;  1VI7 A;  2F4V E;  4LCH A;  3V5R A;  1Z5A A;  4EMD A;  4JI0 I;  1YHC A;  4DUY E;  1USU A;  4IZJ B;  4JI2 I;  1UDQ A;  4JI6 I;  4FW5 A;  5IWA I;  1MG7 A;  1N33 E;  4K0K I;  2PNL A;  4JI3 E;  2JT2 A;  3V2U C;  2Z5C B;  1Z59 A;  1XMQ I;  4DR4 E;  2UU9 I;  4MDT A;  1J5E I;  2UUB E;  4GKK E;  4OO1 B;  2UXC E;  4JI1 E;  2EFG A;  4MU0 A;  4DR2 E;  4IZJ A;  2HFS A;  4DR3 E;  3D4J A;  4B3T E;  2IER A;  4USM A;  2Z5C A;  2UUA I;  4JI2 E;  5K36 A;  1XNR I;  5IWA E;  4K0K E;  5DRQ A;  2HFU A;  4DPU A;  1XMQ E;  4MU1 A;  2UU9 E;  2AE8 A;  4LF4 E;  3H4L A;  2PO0 A;  1FJG I;  2PO1 A;  4HXZ A;  2X7I A;  1Z0T A;  3GME A;  2V2Z A;  2IES A;  3M7N D;  4LFA I;  2O1W A;  3QT5 A;  4FW3 A;  3H1C A;  3J80 C;  1Y4U A;  4P7A A;  4DV7 I;  5K36 F;  5IT9 Q;  1VIS A;  4BA1 B;  4FW6 A;  2NN6 C;  2O1V A;  3PYF A;  4LPF A;  2R3V A;  1FJG E;  3U1Y A;  3GON A;  4WUB A;  2VES A;  1QZR A;  2ZBK B;  4DR6 E;  5ELW A;  3T1H I;  3HUL A;  4BA1 A;  1K47 A;  3P06 A;  3JAM Q;  5JEA A;  4AM3 A;  2PNM A;  2CZ9 A;  4OZE A;  4JI7 I;  5DNX A;  1H7U A;  5K36 E;  1I94 I;  3M6A A;  4LFC E;  2O1T A;  4B3R E;  4DV2 E;  1HR0 E;  4DR7 E;  4OO1 D;  2BA0 G;  4URL A;  2JEA A;  2GS8 A;  4NXN I;  1IBL I;  4P52 A;  3KRN A;  4UTG A;  4JI7 E;  5JEA F;  2UUC I;  1RRE A;  1FWK A;  1I94 E;  1ZM2 A;  5C0X D;  1IBM E;  4DXL A;  3LTO A;  3M85 G;  2E1R A;  4N3O A;  3M85 D;  4DR5 I;  1HNW I;  2A2C A;  4ZVI A;  4LFB I;  4JI5 I;  2Z5E A;  5DRP A;  2NN6 B;  2C37 A;  3K85 A;  3GLL A;  2F4V I;  4DV5 E;  2UXD I;  4NXN E;  1IBL E;  2HKJ A;  4FWH A;  1N33 I;  1N36 I;  2UUC E;  1UEK A;  4ISA A;  3WU4 A;  4BA2 B;  2J7K A;  5JEA E;  2UUB I;  1NZ0 A;  1Z5B A;  4DR5 E;  4LFB E;  4R1F A;  1Y5Y A;  5IT9 C;  4JI5 E;  4NBQ A;  4DR2 I;  4DR3 I;  4B3T I;  4LF6 I;  4U3B A;  2UXD E;  2AJ4 A;  3WU6 A;  2LJP A;  5A2Q Q;  4BA2 A;  3QT6 A;  3B78 A;  4WUD A;  4DUZ E;  1N36 E;  4RPF A;  1R6L A;  1B62 A;  1FWL A;  2BA1 G;  1N0U A;  2BA1 D;  4LF7 E;  3PYE A;  1NHI A;  2WW4 A;  2ZIT A;  4M1K A;  1HNZ E;  3JAM C;  4LF4 I;  3OTO E;  4OKG A;  2J65 A;  1N34 I;  4LF6 E;  1OYP A;  4IFD D; 
#chains in the Genus database with same CATH homology
 5DRQ A;  1YHC A;  1P42 A;  5DRP A;  4FW6 A;  4U3D A;  3P76 A;  4FW5 A;  3PS2 A;  2JT2 A;  1YH8 A;  3PS3 A;  3U1Y A;  4FW4 A;  4FW7 A;  2VES A;  5DRR A;  2GO3 A;  4MDT A;  4ISA A;  4J3D A;  1XXE A;  2IES A;  4MQY A;  3P3G A;  3NZK A;  5DRO A;  2O3Z A;  4IS9 A;  4OKG A;  4FW3 A;  2J65 A;  4OZE A;  2IER A;  4LCG A;  3UHM A;  2GO4 A;  3P3C A;  3PS1 A;  4LCF A;  4LCH A;  4U3B A;  3P3E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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