2J65A

Structure of lpxc from aquifex aeolicus in complex with udp
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
267
structure length
267
Chain Sequence
b'GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
publication title The Nucleotide-Binding Site of Aquifex Aeolicus Lpxc.
pubmed doi rcsb
source organism Aquifex aeolicus
molecule tags Hydrolase
total genus 92
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2006-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 2j65A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 2j65A02
4FW5A 4ISAA 4MDTA 3PS3A 4U3DA 2J65A 3NZKA 4FW6A 1XXEA 2GO4A 2O3ZA 3P76A 5DRQA 4U3BA 2VESA 4LCHA 4OZEA 3U1YA 2GO3A 3P3GA 4MQYA 4OKGA 3P3CA 4FW3A 2IESA 5DROA 3PS1A 4FW7A 1P42A 2IERA 2JT2A 4J3DA 4LCFA 4LCGA 3UHMA 3PS2A 5DRPA 4FW4A 1YHCA 5DRRA 1YH8A 3P3EA 4IS9A
chains in the Genus database with same CATH superfamily
5C0XB 4LFCE 2UUAI 4LF7E 2Q2EB 4HY1A 3T1YE 4B3RI 3J80C 4GKJI 1IBKE 4DV6I 2IOQA 5DRQA 3HKMA 5IT9C 5BR8I 1Z0VA 2X36A 2C39B 2NN6D 3ZKDA 5EL9A 4DR6I 3ZZTA 1E3HA 4Z7YA 4OX9E 4LF4I 4DPXA 5LMNI 3LPSA 1Z59A 4X65I 2C38B 4DR2I 4LF6E 1Z0TA 2AJ4A 2AE8A 2PO0B 4BA1A 1HK7A 1FJGE 2HHHE 3ZZ0A 2UU9I 1D6TA 2J65A 4DR1I 2UUCE 2VQFE 2GO4A 4X66E 2J7KA 1N0VC 4JI8I 2O1WA 4DV5E 2UXCI 4DV1I 4RPFA 4AIMA 1IBMI 1H74A 2O1VA 1ZXNA 4FW9A 4WUBA 5DRRA 4LFAE 4FWGA 2WNRB 4JI7E 2NN6B 5JEAA 3HULA 2GQ0A 1N36I 3LNUA 4B3MI 1BKNA 4DR4I 2EFGA 5JEAC 5A2QC 2HK2A 4LF8E 3OTOI 4FW3A 4EMDA 3PS1A 2CGEA 4DV4I 2UXDI 1PIEA 1UDNA 1UDQA 5JEAE 2C38A 5DRPA 2ZM6E 2A2CA 3ZZUA 5K36F 1RHYA 4IZKB 1HNZI 4OO1F 3M7NG 4FW5A 3PYFA 4ISAA 1HNWI 4GKKE 1RR9A 1XXEA 4DR3E 2Z5EA 4B3SE 3CDIA 3CDJA 3H1CA 2E5LE 5C0XF 1XMOE 2PO2B 4ED4A 4JI5E 4J3DA 4K0KI 5JEAD 3UHMA 3V5RA 3Q6NA 2F4VI 5DNLA 1EA6A 4LF5E 1OYSA 2OI2A 3GMEA 2NN6A 4DUZI 1PKPA 4IS9A 4MU1A 4BA1B 4FWHA 4YY3I 1HR0E 1OYRA 4IFDA 1XNQE 3U1KA 4X64E 1Z0CA 3K85A 1R6MA 3PYEA 2GO3A 4USKA 1MX0A 1XNRI 2PNZA 3M7ND 4JYAE 1USVA 3GCMA 4DU8A 2IESA 1ZM3A 1R6LA 4NXNI 4YHHE 2PNMA 1S4EA 1K47A 4MYUA 3QT7A 4JI2I 4JI6E 1NHIA 1S16A 1Z0WA 2A2DA 2BA1G 2GS8A 2F1DA 4FN5A 4FW4A 5A2QQ 4P7AA 1FWKA 2PO1A 4DXLA 4AQYE 1Y4SA 3B4TA 4N3OA 4R1FA 2UUBI 3ZM7A 5LMUE 2WW4A 4FW6A 4MU4A 4UTGA 5JEAB 2VESA 4OZEA 2V34A 3P3GA 2NN6F 2PO2A 3P3CA 1OYPA 4LF4E 1ZM2A 5DROA 5IWAI 1IBLE 1N33I 4X65E 5GMDA 4JI3E 4IFDD 2UU9E 2BV3A 4HXZA 4KHPI 1USUA 4JV5I 1ELOA 3PYDA 2NPFA 4LFCI 4MYTA 4LF7I 1H72C 4DPWA 1J5EE 2BA1D 4XTJA 4UT4A 4JI0I 1N0UA 1RREA 2JEBA 1H7UA 2HFUA 2UXCE 4DV1E 2IOPA 1NZ0A 3T1HI 3P06A 1HNXE 2VQEE 1I94E 1IBME 4FWDA 3PRYA 5ELWA 4DUYE 4LPFA 3B82A 4OX9I 3L7ZA 5FLXQ 2HK3A 4DV2E 4LFBE 4LF6I 4QNKA 1FJGI 2HHHI 1ZM9A 4DV3E 4WUDA 1B63A 3DD6A 4DR7E 2HFSA 2O3ZA 4IFDB 3KRNA 2VQFI 3Q1QA 3OTOE 4X66I 2JEAB 4B3TE 2V2QA 5K36C 2V2VA 1Y4UA 4DPTA 2UXDE 2PNZB 1B62A 1MG7A 4OO1C 4DV5I 2XEXA 4X62E 4JI4E 3LTOA 1HNZE 4USMA 3ZKBA 1Y5YA 1UDSA 5K36E 1ZXMA 1XMQI 1YH8A 1U2RA 2O1TA 1EI1A 4DU7A 3V2UC 4LFAI 4MU0A 2PO1B 4OO1E 4JI7I 1WUUA 4PRXA 4DV0E 1ZM4A 2CG9A 3HJCA 4LCHA 3K17A 1KIJA 2R42A 3GONA 2UXBI 4FW7A 5JEAF 1N32E 4DPYA 4P52A 4LF9E 5K36D 2ZM6I 4YY3E 2PNLA 4WUCA 2C37A 2HKJA 3P76A 4NXME 2JEAA 2X7IA 4DR3I 4B3SI 4MQYA 2E5LI 1KTVA 2LJPA 3JAMQ 3WU5A 2JEBB 4DV7E 5FLXC 4DPUA 1XMOI 4IZJD 2IERA 1Y60A 1N34E 4JI5I 4JI1E 4DR5E 1KVKA 2BM1A 2DEIA 1OJ4A 1Z0BA 3L7ZB 2UUAE 2R3VA 4LF5I 2V8PA 2CZ9A 4MU3A 4B3RE 3PS3A 4GKJE 3WU4A 4DV6E 1HR0I 3J81Q 1XNQI 4LOMA 4U3BA 5BR8E 1Y6ZA 4X64I 5K36B 4DR6E 3H4LA 4JYAI 2JE6A 2ZBKB 5LMNE 1FKAE 4LCFA 4IFDF 4YHHI 4DR2E 1QZRA 4AIDA 4JV5E 1E3PA 4DR1E 4AQYI 4IZJB 4JI0E 2DEJA 2VF3A 3J7AG 5LMUI 3QT5A 4JI8E 3T1YI 4BA2A 1IBKI 3T1HE 4OKGA 1FI4A 4JG4A 4PU9A 1NHJA 3PYGA 1PVGA 4I3HA 1IBLI 2ZITA 3PS2A 4JI3I 3B78A 1FNMA 2Z5BB 1NHHA 2HKEA 1Z0EA 3U1YA 4Z7CA 1N36E 5GMEA 4B3ME 3JAMC 2C37B 3CWVA 4DR4E 5K36A 4QNJA 2WP8A 2UUCI 1J5EI 5L3JA 4HACB 3F0NA 4OO1A 2BR2A 4DV4E 1HNXI 2Z5CB 2VQEI 1I94I 1XMQE 4DUYI 2E1RA 3J81C 2O1UA 5C0XA 4AM3A 1HNWE 4IZJA 4DV2I 4LFBI 4HYMA 5C0XC 1UDOA 4DV3I 4DR7I 1MU5A 1Z5CA 2UXBE 2BM0A 2C39A 2CVEA 3M85G 4B3TI 3J80Q 5C0XE 4LF8I 4K0KE 5IT9Q 2JT2A 2F4VE 4KQVA 2V2ZA 2JE6B 2PO0A 2Z5BA 4DUZE 4X62I 4JI4I 4GQUA 1VISA 4MDTA 4OO1D 3NZKA 4NBQA 3GLLA 4GKKI 2BA0G 4DV0I 5EKWA 1FWLA 4HACA 1XNRE 4ZVIA 4NXNE 4BA2B 5C0XD 4JI2E 2Z5CA 3QT6A 4URLA 4LCGA 1Z5AA 2WNRA 3J7AM 1YHCA 1N32I 1UEKA 1XHKA 1Z5BA 3WU3A 3M85D 4LF9I 1Z0GA 2UUBE 5DNXA 4U3DA 1H7SA 3D4JA 2NN6C 3QT8A 3K1JA 3M6AA 4IFDC 4NXMI 2WP8B 3WU6A 1H73A 5IWAE 1DARA 1N33E 2NN6E 5FWKA 1KKHA 4OO1B 4DV7I 1P42A 2BR2B 4M1KA 2BA0D 5LL6R 4IFDE 1A6FA 3B8HA 4IZKA 1N34I 4PRVA 4KHPE 4JI1I 4JI6I 1VI7A 3Q6MA 4DR5I 3P3EA
chains in the Genus database with same CATH topology
4FW5A 4ISAA 4MDTA 3PS3A 4U3DA 2J65A 3NZKA 4FW6A 1XXEA 2GO4A 2O3ZA 3P76A 5DRQA 4U3BA 2VESA 4LCHA 4OZEA 3U1YA 2GO3A 3P3GA 4MQYA 4OKGA 3P3CA 4FW3A 2IESA 5DROA 3PS1A 4FW7A 1P42A 2IERA 2JT2A 4J3DA 4LCFA 4LCGA 3UHMA 3PS2A 5DRPA 4FW4A 1YHCA 5DRRA 1YH8A 3P3EA 4IS9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FW5 A;  4ISA A;  4MDT A;  3PS3 A;  4U3D A;  2J65 A;  3NZK A;  4FW6 A;  1XXE A;  2GO4 A;  2O3Z A;  3P76 A;  5DRQ A;  4U3B A;  2VES A;  4LCH A;  4OZE A;  3U1Y A;  2GO3 A;  3P3G A;  4MQY A;  4OKG A;  3P3C A;  4FW3 A;  2IES A;  5DRO A;  3PS1 A;  4FW7 A;  1P42 A;  2IER A;  2JT2 A;  4J3D A;  4LCF A;  4LCG A;  3UHM A;  3PS2 A;  5DRP A;  4FW4 A;  1YHC A;  5DRR A;  1YH8 A;  3P3E A;  4IS9 A; 
#chains in the Genus database with same CATH topology
 5C0X B;  4LFC E;  2UUA I;  4LF7 E;  2Q2E B;  4HY1 A;  3T1Y E;  4B3R I;  3J80 C;  4GKJ I;  1IBK E;  4DV6 I;  2IOQ A;  5DRQ A;  3HKM A;  5IT9 C;  5BR8 I;  1Z0V A;  2X36 A;  2C39 B;  2NN6 D;  3ZKD A;  5EL9 A;  4DR6 I;  3ZZT A;  1E3H A;  4Z7Y A;  4OX9 E;  4LF4 I;  4DPX A;  5LMN I;  3LPS A;  1Z59 A;  4X65 I;  2C38 B;  4DR2 I;  4LF6 E;  1Z0T A;  2AJ4 A;  2AE8 A;  2PO0 B;  4BA1 A;  1HK7 A;  1FJG E;  2HHH E;  3ZZ0 A;  2UU9 I;  1D6T A;  2J65 A;  4DR1 I;  2UUC E;  2VQF E;  2GO4 A;  4X66 E;  2J7K A;  1N0V C;  4JI8 I;  2O1W A;  4DV5 E;  2UXC I;  4DV1 I;  4RPF A;  4AIM A;  1IBM I;  1H74 A;  2O1V A;  1ZXN A;  4FW9 A;  4WUB A;  5DRR A;  4LFA E;  4FWG A;  2WNR B;  4JI7 E;  2NN6 B;  5JEA A;  3HUL A;  2GQ0 A;  1N36 I;  3LNU A;  4B3M I;  1BKN A;  4DR4 I;  2EFG A;  5JEA C;  5A2Q C;  2HK2 A;  4LF8 E;  3OTO I;  4FW3 A;  4EMD A;  3PS1 A;  2CGE A;  4DV4 I;  2UXD I;  1PIE A;  1UDN A;  1UDQ A;  5JEA E;  2C38 A;  5DRP A;  2ZM6 E;  2A2C A;  3ZZU A;  5K36 F;  1RHY A;  4IZK B;  1HNZ I;  4OO1 F;  3M7N G;  4FW5 A;  3PYF A;  4ISA A;  1HNW I;  4GKK E;  1RR9 A;  1XXE A;  4DR3 E;  2Z5E A;  4B3S E;  3CDI A;  3CDJ A;  3H1C A;  2E5L E;  5C0X F;  1XMO E;  2PO2 B;  4ED4 A;  4JI5 E;  4J3D A;  4K0K I;  5JEA D;  3UHM A;  3V5R A;  3Q6N A;  2F4V I;  5DNL A;  1EA6 A;  4LF5 E;  1OYS A;  2OI2 A;  3GME A;  2NN6 A;  4DUZ I;  1PKP A;  4IS9 A;  4MU1 A;  4BA1 B;  4FWH A;  4YY3 I;  1HR0 E;  1OYR A;  4IFD A;  1XNQ E;  3U1K A;  4X64 E;  1Z0C A;  3K85 A;  1R6M A;  3PYE A;  2GO3 A;  4USK A;  1MX0 A;  1XNR I;  2PNZ A;  3M7N D;  4JYA E;  1USV A;  3GCM A;  4DU8 A;  2IES A;  1ZM3 A;  1R6L A;  4NXN I;  4YHH E;  2PNM A;  1S4E A;  1K47 A;  4MYU A;  3QT7 A;  4JI2 I;  4JI6 E;  1NHI A;  1S16 A;  1Z0W A;  2A2D A;  2BA1 G;  2GS8 A;  2F1D A;  4FN5 A;  4FW4 A;  5A2Q Q;  4P7A A;  1FWK A;  2PO1 A;  4DXL A;  4AQY E;  1Y4S A;  3B4T A;  4N3O A;  4R1F A;  2UUB I;  3ZM7 A;  5LMU E;  2WW4 A;  4FW6 A;  4MU4 A;  4UTG A;  5JEA B;  2VES A;  4OZE A;  2V34 A;  3P3G A;  2NN6 F;  2PO2 A;  3P3C A;  1OYP A;  4LF4 E;  1ZM2 A;  5DRO A;  5IWA I;  1IBL E;  1N33 I;  4X65 E;  5GMD A;  4JI3 E;  4IFD D;  2UU9 E;  2BV3 A;  4HXZ A;  4KHP I;  1USU A;  4JV5 I;  1ELO A;  3PYD A;  2NPF A;  4LFC I;  4MYT A;  4LF7 I;  1H72 C;  4DPW A;  1J5E E;  2BA1 D;  4XTJ A;  4UT4 A;  4JI0 I;  1N0U A;  1RRE A;  2JEB A;  1H7U A;  2HFU A;  2UXC E;  4DV1 E;  2IOP A;  1NZ0 A;  3T1H I;  3P06 A;  1HNX E;  2VQE E;  1I94 E;  1IBM E;  4FWD A;  3PRY A;  5ELW A;  4DUY E;  4LPF A;  3B82 A;  4OX9 I;  3L7Z A;  5FLX Q;  2HK3 A;  4DV2 E;  4LFB E;  4LF6 I;  4QNK A;  1FJG I;  2HHH I;  1ZM9 A;  4DV3 E;  4WUD A;  1B63 A;  3DD6 A;  4DR7 E;  2HFS A;  2O3Z A;  4IFD B;  3KRN A;  2VQF I;  3Q1Q A;  3OTO E;  4X66 I;  2JEA B;  4B3T E;  2V2Q A;  5K36 C;  2V2V A;  1Y4U A;  4DPT A;  2UXD E;  2PNZ B;  1B62 A;  1MG7 A;  4OO1 C;  4DV5 I;  2XEX A;  4X62 E;  4JI4 E;  3LTO A;  1HNZ E;  4USM A;  3ZKB A;  1Y5Y A;  1UDS A;  5K36 E;  1ZXM A;  1XMQ I;  1YH8 A;  1U2R A;  2O1T A;  1EI1 A;  4DU7 A;  3V2U C;  4LFA I;  4MU0 A;  2PO1 B;  4OO1 E;  4JI7 I;  1WUU A;  4PRX A;  4DV0 E;  1ZM4 A;  2CG9 A;  3HJC A;  4LCH A;  3K17 A;  1KIJ A;  2R42 A;  3GON A;  2UXB I;  4FW7 A;  5JEA F;  1N32 E;  4DPY A;  4P52 A;  4LF9 E;  5K36 D;  2ZM6 I;  4YY3 E;  2PNL A;  4WUC A;  2C37 A;  2HKJ A;  3P76 A;  4NXM E;  2JEA A;  2X7I A;  4DR3 I;  4B3S I;  4MQY A;  2E5L I;  1KTV A;  2LJP A;  3JAM Q;  3WU5 A;  2JEB B;  4DV7 E;  5FLX C;  4DPU A;  1XMO I;  4IZJ D;  2IER A;  1Y60 A;  1N34 E;  4JI5 I;  4JI1 E;  4DR5 E;  1KVK A;  2BM1 A;  2DEI A;  1OJ4 A;  1Z0B A;  3L7Z B;  2UUA E;  2R3V A;  4LF5 I;  2V8P A;  2CZ9 A;  4MU3 A;  4B3R E;  3PS3 A;  4GKJ E;  3WU4 A;  4DV6 E;  1HR0 I;  3J81 Q;  1XNQ I;  4LOM A;  4U3B A;  5BR8 E;  1Y6Z A;  4X64 I;  5K36 B;  4DR6 E;  3H4L A;  4JYA I;  2JE6 A;  2ZBK B;  5LMN E;  1FKA E;  4LCF A;  4IFD F;  4YHH I;  4DR2 E;  1QZR A;  4AID A;  4JV5 E;  1E3P A;  4DR1 E;  4AQY I;  4IZJ B;  4JI0 E;  2DEJ A;  2VF3 A;  3J7A G;  5LMU I;  3QT5 A;  4JI8 E;  3T1Y I;  4BA2 A;  1IBK I;  3T1H E;  4OKG A;  1FI4 A;  4JG4 A;  4PU9 A;  1NHJ A;  3PYG A;  1PVG A;  4I3H A;  1IBL I;  2ZIT A;  3PS2 A;  4JI3 I;  3B78 A;  1FNM A;  2Z5B B;  1NHH A;  2HKE A;  1Z0E A;  3U1Y A;  4Z7C A;  1N36 E;  5GME A;  4B3M E;  3JAM C;  2C37 B;  3CWV A;  4DR4 E;  5K36 A;  4QNJ A;  2WP8 A;  2UUC I;  1J5E I;  5L3J A;  4HAC B;  3F0N A;  4OO1 A;  2BR2 A;  4DV4 E;  1HNX I;  2Z5C B;  2VQE I;  1I94 I;  1XMQ E;  4DUY I;  2E1R A;  3J81 C;  2O1U A;  5C0X A;  4AM3 A;  1HNW E;  4IZJ A;  4DV2 I;  4LFB I;  4HYM A;  5C0X C;  1UDO A;  4DV3 I;  4DR7 I;  1MU5 A;  1Z5C A;  2UXB E;  2BM0 A;  2C39 A;  2CVE A;  3M85 G;  4B3T I;  3J80 Q;  5C0X E;  4LF8 I;  4K0K E;  5IT9 Q;  2JT2 A;  2F4V E;  4KQV A;  2V2Z A;  2JE6 B;  2PO0 A;  2Z5B A;  4DUZ E;  4X62 I;  4JI4 I;  4GQU A;  1VIS A;  4MDT A;  4OO1 D;  3NZK A;  4NBQ A;  3GLL A;  4GKK I;  2BA0 G;  4DV0 I;  5EKW A;  1FWL A;  4HAC A;  1XNR E;  4ZVI A;  4NXN E;  4BA2 B;  5C0X D;  4JI2 E;  2Z5C A;  3QT6 A;  4URL A;  4LCG A;  1Z5A A;  2WNR A;  3J7A M;  1YHC A;  1N32 I;  1UEK A;  1XHK A;  1Z5B A;  3WU3 A;  3M85 D;  4LF9 I;  1Z0G A;  2UUB E;  5DNX A;  4U3D A;  1H7S A;  3D4J A;  2NN6 C;  3QT8 A;  3K1J A;  3M6A A;  4IFD C;  4NXM I;  2WP8 B;  3WU6 A;  1H73 A;  5IWA E;  1DAR A;  1N33 E;  2NN6 E;  5FWK A;  1KKH A;  4OO1 B;  4DV7 I;  1P42 A;  2BR2 B;  4M1K A;  2BA0 D;  5LL6 R;  4IFD E;  1A6F A;  3B8H A;  4IZK A;  1N34 I;  4PRV A;  4KHP E;  4JI1 I;  4JI6 I;  1VI7 A;  3Q6M A;  4DR5 I;  3P3E A; 
#chains in the Genus database with same CATH homology
 4FW5 A;  4ISA A;  4MDT A;  3PS3 A;  4U3D A;  2J65 A;  3NZK A;  4FW6 A;  1XXE A;  2GO4 A;  2O3Z A;  3P76 A;  5DRQ A;  4U3B A;  2VES A;  4LCH A;  4OZE A;  3U1Y A;  2GO3 A;  3P3G A;  4MQY A;  4OKG A;  3P3C A;  4FW3 A;  2IES A;  5DRO A;  3PS1 A;  4FW7 A;  1P42 A;  2IER A;  2JT2 A;  4J3D A;  4LCF A;  4LCG A;  3UHM A;  3PS2 A;  5DRP A;  4FW4 A;  1YHC A;  5DRR A;  1YH8 A;  3P3E A;  4IS9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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