5DRPA

Structure of the aalpxc/lpc-023 complex
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
267
structure length
267
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Aquifex aeolicus (strain vf5)
molecule tags Hydrolase/hydrolase inhibitor
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 92
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drpA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drpA02
4IS9A 3P3CA 3U1YA 2O3ZA 3P3EA 1YHCA 4FW6A 4OKGA 4FW4A 4MDTA 2GO3A 1YH8A 4LCFA 4U3BA 3PS1A 3P76A 3NZKA 3P3GA 3PS2A 5DRRA 5DRPA 5DROA 2GO4A 4FW3A 1XXEA 4FW5A 2IESA 1P42A 4OZEA 2JT2A 4LCHA 2IERA 3UHMA 4U3DA 4J3DA 3PS3A 4LCGA 2VESA 4ISAA 2J65A 4MQYA 5DRQA 4FW7A
chains in the Genus database with same CATH superfamily
3J7AG 1H74A 4OO1E 2ZM6I 2Z5BA 2VQEI 1HK7A 3ZZTA 1H72C 4OO1A 4DR2I 1XMQI 2C37A 2O1VA 4BA1A 3KRNA 3ZZ0A 2F4VI 4X65E 4DR6I 2UU9I 1B63A 2O1TA 2WP8B 2JEBA 3PYEA 1XMOI 2X36A 4JI0E 1BKNA 1HR0E 4LFCI 2GQ0A 3HKMA 1Z0CA 4GKKE 2Z5EA 1IBKE 4OO1D 3V5RA 4AQYE 3K85A 4DV3E 3NZKA 3P76A 3LTOA 3M7NG 2UXDE 1Z0EA 2DEJA 4DV1I 5FWKA 4WUCA 5LMUE 2CZ9A 4LF7I 2JE6A 4HACB 2BA1D 4LCGA 2PO1B 2ZITA 1Z0GA 1EI1A 2DEIA 2V34A 2E5LI 1HNWE 2WP8A 2BR2B 2HHHE 1IBLE 4DUYE 4P7AA 4NXME 4DV2E 1N34E 2JEAA 5K36F 4FWGA 1I94I 4LF4E 1OYPA 4IZKA 1XNQE 2HK2A 5BR8E 1N33I 3QT8A 4LF6E 1XXEA 3GONA 1OJ4A 1FJGI 1UEKA 4URLA 1HNZE 4DU7A 5K36B 4X66E 4B3ME 3J7AM 2R3VA 1R6MA 4OO1B 5C0XE 4LF8I 2PNZA 3Q1QA 1H7SA 4AIDA 2VQEE 4LFBE 5EKWA 5C0XA 2NN6F 4JI3I 4IFDB 4B3SE 4LCFA 4B3RE 3JAMQ 3PS1A 3GMEA 3B78A 3WU5A 4DPYA 2C38A 4MYUA 4OO1F 5JEAF 2NN6D 4KHPE 4DV6E 2Q2EB 5JEAC 4X62E 3PRYA 4MYTA 4DR3E 3CDJA 5DNLA 4IFDF 4LF5E 3L7ZB 2BM1A 4K0KE 1WUUA 4DV5I 3V2UC 5C0XC 2OI2A 4GKJI 4DV7E 2ZBKB 5JEAB 5L3JA 2BV3A 4P52A 4NXNE 1VISA 4DR1I 2CVEA 2UUAE 4LOMA 4DV3I 1RR9A 4JYAI 3HULA 4MU4A 4DR2E 1XMQE 1HNXE 4OX9E 1FNMA 3D4JA 2VESA 2CGEA 1KTVA 2VQFE 3B4TA 4LF9E 3M6AA 2F4VE 4DV0E 1IBLI 4XTJA 1FKAE 2UUBI 1FI4A 2IOQA 3PYGA 2NN6B 1N0UA 2GO3A 4BA2B 2XEXA 3CWVA 2UXBE 2PO1A 2A2DA 2C37B 2O1UA 1IBMI 4M1KA 4IZJB 4GKKI 2C39B 3LPSA 3CDIA 5JEAD 2UUCI 4USKA 1J5EI 1MX0A 2BA0G 1Y6ZA 3U1YA 1OYSA 2WNRB 2PNMA 3ZZUA 4JI6E 4LFBI 2CG9A 4MDTA 3OTOI 1UDQA 2E5LE 1ZM9A 5IWAE 4AM3A 4DV2I 2X7IA 1Z0VA 5JEAA 3F0NA 4RPFA 4ISAA 5EL9A 1QZRA 1OYRA 3DD6A 4MQYA 4DUZE 4MU0A 2NN6C 4DPUA 5JEAE 4Z7YA 4DPWA 4LF6I 3U1KA 1PIEA 1ZXMA 4WUBA 1RHYA 3P3EA 1Y4SA 3M85G 4DR7E 1U2RA 4X65I 1D6TA 4ZVIA 4YHHI 1YH8A 3B82A 4IZJD 2V2QA 3WU3A 4FN5A 4X64E 2HFSA 2AJ4A 1MU5A 4JYAE 1N32I 5DRPA 2BA0D 5LL6R 2HK3A 4HY1A 3PYDA 2GO4A 4JI0I 1RREA 2PO2B 4BA1B 1HR0I 1NHHA 1KIJA 4DR4E 1ZM2A 1EA6A 1S16A 4LFAI 4JG4A 3QT6A 2VQFI 1IBKI 4JI8E 4IS9A 3J80C 4KHPI 5C0XB 4JI4E 2JEBB 1VI7A 4JI7I 3P3CA 1XHKA 4IFDA 5K36D 1E3HA 1Y5YA 2Z5CB 2GS8A 3LNUA 4PRVA 4GQUA 4HXZA 3P3GA 4YY3I 4FWHA 5A2QC 1Z59A 1XMOE 2UU9E 1J5EE 2Z5BB 1Y60A 4LFCE 1NZ0A 3T1YE 1K47A 1XNQI 2O1WA 4DPTA 3J81C 1HNXI 4OX9I 3OTOE 2BR2A 3K1JA 2UXDI 4DV1E 4LPFA 4DV4I 4AIMA 4AQYI 2ZM6E 3H1CA 4DV0I 2BA1G 4LF8E 2R42A 4IZKB 1PKPA 2NN6E 4JI1I 1NHJA 3HJCA 1H7UA 5FLXC 1HNWI 1MG7A 1DARA 4B3TE 4JI2I 4DUYI 1IBME 5C0XF 3GLLA 2F1DA 4DR7I 3Q6NA 4HYMA 4PU9A 2EFGA 4YHHE 4DR5I 2PO2A 4UTGA 5LMNE 4KQVA 4OO1C 4DV5E 1N32E 2JE6B 4HACA 4LF4I 4FW5A 1N0VC 4UT4A 5BR8I 2UXCI 2IERA 1ZM4A 4U3DA 4X66I 4J3DA 4B3MI 1Z5BA 2VF3A 4IFDE 2NPFA 1XNRI 4QNJA 2HFUA 1Y4UA 1USUA 3P06A 3ZM7A 4B3SI 4B3RI 5IT9Q 2HKEA 3B8HA 5GMDA 2V8PA 4JV5E 1UDSA 1B62A 1KVKA 4MU1A 1FWLA 5DROA 1N34I 4LF9I 4OZEA 4DV6I 4K0KI 3JAMC 2Z5CA 2JEAB 5DRQA 4X64I 1KKHA 2LJPA 4Z7CA 3M7ND 2UXBI 3GCMA 3QT7A 4GKJE 2O3ZA 1YHCA 5C0XD 3T1HE 4FW6A 4DR4I 4FW4A 4R1FA 3WU6A 2WNRA 4DR1E 4U3BA 4DV4E 2BM0A 4JI8I 1S4EA 5A2QQ 3PYFA 1ELOA 1N36E 4JI7E 4JI4I 4BA2A 2NN6A 3K17A 5IT9C 1P42A 3ZKDA 3UHMA 4JI6I 4FW9A 4N3OA 4DU8A 1A6FA 4JI5I 4B3TI 4JI2E 3H4LA 4WUDA 2HKJA 4IFDC 4I3HA 2A2CA 4OKGA 4DR5E 2WW4A 4ED4A 1R6LA 4DUZI 1UDNA 1USVA 3T1YI 2HHHI 2V2ZA 5ELWA 2IESA 1PVGA 2JT2A 4NXMI 4DR6E 3WU4A 3QT5A 2J7KA 1UDOA 2J65A 2PNZB 1XNRE 1I94E 3J81Q 2UUCE 1FWKA 4EMDA 5FLXQ 1Z5CA 2E1RA 4FWDA 4JI1E 4IZJA 4JV5I 5GMEA 1H73A 4LFAE 5IWAI 4DXLA 3PS2A 5LMUI 2PO0B 2UUBE 1Z0BA 1NHIA 1Z0TA 4LF7E 4JI3E 1ZXNA 2V2VA 1E3PA 3ZKBA 2PNLA 5LMNI 5K36C 3L7ZA 3M85D 4MU3A 4IFDD 5K36A 3J80Q 2UXCE 4X62I 3T1HI 1Z5AA 4YY3E 4DR3I 4PRXA 4LF5I 5K36E 4NBQA 2C39A 3Q6MA 4DPXA 2AE8A 4USMA 1N36I 1N33E 5DRRA 4DV7I 4FW3A 5DNXA 4NXNI 4LCHA 1FJGE 2UUAI 2PO0A 2C38B 3PS3A 1HNZI 1ZM3A 2IOPA 4JI5E 4QNKA 1Z0WA 4FW7A
chains in the Genus database with same CATH topology
4IS9A 3P3CA 3U1YA 2O3ZA 3P3EA 1YHCA 4FW6A 4OKGA 4FW4A 4MDTA 2GO3A 1YH8A 4LCFA 4U3BA 3PS1A 3P76A 3NZKA 3P3GA 3PS2A 5DRRA 5DRPA 5DROA 2GO4A 4FW3A 1XXEA 4FW5A 2IESA 1P42A 4OZEA 2JT2A 4LCHA 2IERA 3UHMA 4U3DA 4J3DA 3PS3A 4LCGA 2VESA 4ISAA 2J65A 4MQYA 5DRQA 4FW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IS9 A;  3P3C A;  3U1Y A;  2O3Z A;  3P3E A;  1YHC A;  4FW6 A;  4OKG A;  4FW4 A;  4MDT A;  2GO3 A;  1YH8 A;  4LCF A;  4U3B A;  3PS1 A;  3P76 A;  3NZK A;  3P3G A;  3PS2 A;  5DRR A;  5DRP A;  5DRO A;  2GO4 A;  4FW3 A;  1XXE A;  4FW5 A;  2IES A;  1P42 A;  4OZE A;  2JT2 A;  4LCH A;  2IER A;  3UHM A;  4U3D A;  4J3D A;  3PS3 A;  4LCG A;  2VES A;  4ISA A;  2J65 A;  4MQY A;  5DRQ A;  4FW7 A; 
#chains in the Genus database with same CATH topology
 3J7A G;  1H74 A;  4OO1 E;  2ZM6 I;  2Z5B A;  2VQE I;  1HK7 A;  3ZZT A;  1H72 C;  4OO1 A;  4DR2 I;  1XMQ I;  2C37 A;  2O1V A;  4BA1 A;  3KRN A;  3ZZ0 A;  2F4V I;  4X65 E;  4DR6 I;  2UU9 I;  1B63 A;  2O1T A;  2WP8 B;  2JEB A;  3PYE A;  1XMO I;  2X36 A;  4JI0 E;  1BKN A;  1HR0 E;  4LFC I;  2GQ0 A;  3HKM A;  1Z0C A;  4GKK E;  2Z5E A;  1IBK E;  4OO1 D;  3V5R A;  4AQY E;  3K85 A;  4DV3 E;  3NZK A;  3P76 A;  3LTO A;  3M7N G;  2UXD E;  1Z0E A;  2DEJ A;  4DV1 I;  5FWK A;  4WUC A;  5LMU E;  2CZ9 A;  4LF7 I;  2JE6 A;  4HAC B;  2BA1 D;  4LCG A;  2PO1 B;  2ZIT A;  1Z0G A;  1EI1 A;  2DEI A;  2V34 A;  2E5L I;  1HNW E;  2WP8 A;  2BR2 B;  2HHH E;  1IBL E;  4DUY E;  4P7A A;  4NXM E;  4DV2 E;  1N34 E;  2JEA A;  5K36 F;  4FWG A;  1I94 I;  4LF4 E;  1OYP A;  4IZK A;  1XNQ E;  2HK2 A;  5BR8 E;  1N33 I;  3QT8 A;  4LF6 E;  1XXE A;  3GON A;  1OJ4 A;  1FJG I;  1UEK A;  4URL A;  1HNZ E;  4DU7 A;  5K36 B;  4X66 E;  4B3M E;  3J7A M;  2R3V A;  1R6M A;  4OO1 B;  5C0X E;  4LF8 I;  2PNZ A;  3Q1Q A;  1H7S A;  4AID A;  2VQE E;  4LFB E;  5EKW A;  5C0X A;  2NN6 F;  4JI3 I;  4IFD B;  4B3S E;  4LCF A;  4B3R E;  3JAM Q;  3PS1 A;  3GME A;  3B78 A;  3WU5 A;  4DPY A;  2C38 A;  4MYU A;  4OO1 F;  5JEA F;  2NN6 D;  4KHP E;  4DV6 E;  2Q2E B;  5JEA C;  4X62 E;  3PRY A;  4MYT A;  4DR3 E;  3CDJ A;  5DNL A;  4IFD F;  4LF5 E;  3L7Z B;  2BM1 A;  4K0K E;  1WUU A;  4DV5 I;  3V2U C;  5C0X C;  2OI2 A;  4GKJ I;  4DV7 E;  2ZBK B;  5JEA B;  5L3J A;  2BV3 A;  4P52 A;  4NXN E;  1VIS A;  4DR1 I;  2CVE A;  2UUA E;  4LOM A;  4DV3 I;  1RR9 A;  4JYA I;  3HUL A;  4MU4 A;  4DR2 E;  1XMQ E;  1HNX E;  4OX9 E;  1FNM A;  3D4J A;  2VES A;  2CGE A;  1KTV A;  2VQF E;  3B4T A;  4LF9 E;  3M6A A;  2F4V E;  4DV0 E;  1IBL I;  4XTJ A;  1FKA E;  2UUB I;  1FI4 A;  2IOQ A;  3PYG A;  2NN6 B;  1N0U A;  2GO3 A;  4BA2 B;  2XEX A;  3CWV A;  2UXB E;  2PO1 A;  2A2D A;  2C37 B;  2O1U A;  1IBM I;  4M1K A;  4IZJ B;  4GKK I;  2C39 B;  3LPS A;  3CDI A;  5JEA D;  2UUC I;  4USK A;  1J5E I;  1MX0 A;  2BA0 G;  1Y6Z A;  3U1Y A;  1OYS A;  2WNR B;  2PNM A;  3ZZU A;  4JI6 E;  4LFB I;  2CG9 A;  4MDT A;  3OTO I;  1UDQ A;  2E5L E;  1ZM9 A;  5IWA E;  4AM3 A;  4DV2 I;  2X7I A;  1Z0V A;  5JEA A;  3F0N A;  4RPF A;  4ISA A;  5EL9 A;  1QZR A;  1OYR A;  3DD6 A;  4MQY A;  4DUZ E;  4MU0 A;  2NN6 C;  4DPU A;  5JEA E;  4Z7Y A;  4DPW A;  4LF6 I;  3U1K A;  1PIE A;  1ZXM A;  4WUB A;  1RHY A;  3P3E A;  1Y4S A;  3M85 G;  4DR7 E;  1U2R A;  4X65 I;  1D6T A;  4ZVI A;  4YHH I;  1YH8 A;  3B82 A;  4IZJ D;  2V2Q A;  3WU3 A;  4FN5 A;  4X64 E;  2HFS A;  2AJ4 A;  1MU5 A;  4JYA E;  1N32 I;  5DRP A;  2BA0 D;  5LL6 R;  2HK3 A;  4HY1 A;  3PYD A;  2GO4 A;  4JI0 I;  1RRE A;  2PO2 B;  4BA1 B;  1HR0 I;  1NHH A;  1KIJ A;  4DR4 E;  1ZM2 A;  1EA6 A;  1S16 A;  4LFA I;  4JG4 A;  3QT6 A;  2VQF I;  1IBK I;  4JI8 E;  4IS9 A;  3J80 C;  4KHP I;  5C0X B;  4JI4 E;  2JEB B;  1VI7 A;  4JI7 I;  3P3C A;  1XHK A;  4IFD A;  5K36 D;  1E3H A;  1Y5Y A;  2Z5C B;  2GS8 A;  3LNU A;  4PRV A;  4GQU A;  4HXZ A;  3P3G A;  4YY3 I;  4FWH A;  5A2Q C;  1Z59 A;  1XMO E;  2UU9 E;  1J5E E;  2Z5B B;  1Y60 A;  4LFC E;  1NZ0 A;  3T1Y E;  1K47 A;  1XNQ I;  2O1W A;  4DPT A;  3J81 C;  1HNX I;  4OX9 I;  3OTO E;  2BR2 A;  3K1J A;  2UXD I;  4DV1 E;  4LPF A;  4DV4 I;  4AIM A;  4AQY I;  2ZM6 E;  3H1C A;  4DV0 I;  2BA1 G;  4LF8 E;  2R42 A;  4IZK B;  1PKP A;  2NN6 E;  4JI1 I;  1NHJ A;  3HJC A;  1H7U A;  5FLX C;  1HNW I;  1MG7 A;  1DAR A;  4B3T E;  4JI2 I;  4DUY I;  1IBM E;  5C0X F;  3GLL A;  2F1D A;  4DR7 I;  3Q6N A;  4HYM A;  4PU9 A;  2EFG A;  4YHH E;  4DR5 I;  2PO2 A;  4UTG A;  5LMN E;  4KQV A;  4OO1 C;  4DV5 E;  1N32 E;  2JE6 B;  4HAC A;  4LF4 I;  4FW5 A;  1N0V C;  4UT4 A;  5BR8 I;  2UXC I;  2IER A;  1ZM4 A;  4U3D A;  4X66 I;  4J3D A;  4B3M I;  1Z5B A;  2VF3 A;  4IFD E;  2NPF A;  1XNR I;  4QNJ A;  2HFU A;  1Y4U A;  1USU A;  3P06 A;  3ZM7 A;  4B3S I;  4B3R I;  5IT9 Q;  2HKE A;  3B8H A;  5GMD A;  2V8P A;  4JV5 E;  1UDS A;  1B62 A;  1KVK A;  4MU1 A;  1FWL A;  5DRO A;  1N34 I;  4LF9 I;  4OZE A;  4DV6 I;  4K0K I;  3JAM C;  2Z5C A;  2JEA B;  5DRQ A;  4X64 I;  1KKH A;  2LJP A;  4Z7C A;  3M7N D;  2UXB I;  3GCM A;  3QT7 A;  4GKJ E;  2O3Z A;  1YHC A;  5C0X D;  3T1H E;  4FW6 A;  4DR4 I;  4FW4 A;  4R1F A;  3WU6 A;  2WNR A;  4DR1 E;  4U3B A;  4DV4 E;  2BM0 A;  4JI8 I;  1S4E A;  5A2Q Q;  3PYF A;  1ELO A;  1N36 E;  4JI7 E;  4JI4 I;  4BA2 A;  2NN6 A;  3K17 A;  5IT9 C;  1P42 A;  3ZKD A;  3UHM A;  4JI6 I;  4FW9 A;  4N3O A;  4DU8 A;  1A6F A;  4JI5 I;  4B3T I;  4JI2 E;  3H4L A;  4WUD A;  2HKJ A;  4IFD C;  4I3H A;  2A2C A;  4OKG A;  4DR5 E;  2WW4 A;  4ED4 A;  1R6L A;  4DUZ I;  1UDN A;  1USV A;  3T1Y I;  2HHH I;  2V2Z A;  5ELW A;  2IES A;  1PVG A;  2JT2 A;  4NXM I;  4DR6 E;  3WU4 A;  3QT5 A;  2J7K A;  1UDO A;  2J65 A;  2PNZ B;  1XNR E;  1I94 E;  3J81 Q;  2UUC E;  1FWK A;  4EMD A;  5FLX Q;  1Z5C A;  2E1R A;  4FWD A;  4JI1 E;  4IZJ A;  4JV5 I;  5GME A;  1H73 A;  4LFA E;  5IWA I;  4DXL A;  3PS2 A;  5LMU I;  2PO0 B;  2UUB E;  1Z0B A;  1NHI A;  1Z0T A;  4LF7 E;  4JI3 E;  1ZXN A;  2V2V A;  1E3P A;  3ZKB A;  2PNL A;  5LMN I;  5K36 C;  3L7Z A;  3M85 D;  4MU3 A;  4IFD D;  5K36 A;  3J80 Q;  2UXC E;  4X62 I;  3T1H I;  1Z5A A;  4YY3 E;  4DR3 I;  4PRX A;  4LF5 I;  5K36 E;  4NBQ A;  2C39 A;  3Q6M A;  4DPX A;  2AE8 A;  4USM A;  1N36 I;  1N33 E;  5DRR A;  4DV7 I;  4FW3 A;  5DNX A;  4NXN I;  4LCH A;  1FJG E;  2UUA I;  2PO0 A;  2C38 B;  3PS3 A;  1HNZ I;  1ZM3 A;  2IOP A;  4JI5 E;  4QNK A;  1Z0W A;  4FW7 A; 
#chains in the Genus database with same CATH homology
 4IS9 A;  3P3C A;  3U1Y A;  2O3Z A;  3P3E A;  1YHC A;  4FW6 A;  4OKG A;  4FW4 A;  4MDT A;  2GO3 A;  1YH8 A;  4LCF A;  4U3B A;  3PS1 A;  3P76 A;  3NZK A;  3P3G A;  3PS2 A;  5DRR A;  5DRP A;  5DRO A;  2GO4 A;  4FW3 A;  1XXE A;  4FW5 A;  2IES A;  1P42 A;  4OZE A;  2JT2 A;  4LCH A;  2IER A;  3UHM A;  4U3D A;  4J3D A;  3PS3 A;  4LCG A;  2VES A;  4ISA A;  2J65 A;  4MQY A;  5DRQ A;  4FW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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