5DRPA

Structure of the aalpxc/lpc-023 complex
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
267
structure length
267
Chain Sequence
b'GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Aquifex aeolicus (strain vf5)
molecule tags Hydrolase/hydrolase inhibitor
total genus 92
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drpA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drpA02
4J3DA 4FW4A 1XXEA 5DRQA 4LCGA 1YHCA 3P76A 1P42A 5DRPA 4FW6A 3P3EA 2GO4A 2GO3A 4ISAA 2O3ZA 5DROA 2J65A 4MQYA 5DRRA 2IESA 4FW7A 4OKGA 2VESA 4IS9A 4FW3A 3PS1A 3P3CA 3P3GA 4OZEA 1YH8A 3PS2A 2JT2A 3UHMA 4LCHA 4LCFA 2IERA 4U3DA 4U3BA 3NZKA 3PS3A 3U1YA 4FW5A 4MDTA
chains in the Genus database with same CATH superfamily
2V34A 1Z0EA 4FN5A 4Z7CA 1P42A 1N34I 2R3VA 4IFDE 2UXDI 3U1KA 5LMNE 4JI0E 1PKPA 4B3TE 4XTJA 5EKWA 2UUCE 1ZXMA 2F4VI 2ZM6E 4ZVIA 1FJGI 4OX9E 2JEBA 2J7KA 4EMDA 4LFAI 4BA2A 4MU0A 2IERA 4X64I 4DV4E 3Q1QA 4X62E 5A2QQ 1R6LA 4MYUA 2DEJA 2C39A 1H74A 2HKJA 2NPFA 3J81C 4DV2E 4DV5E 4JI3I 2BA0D 4B3SE 1DARA 5DNXA 1ZM2A 3H1CA 2HHHE 2NN6C 2PO2A 4MYTA 4OO1C 4MU1A 1YH8A 4RPFA 4UTGA 2O1VA 4YHHI 4GQUA 4DR4E 2V2VA 5IT9Q 1B63A 4DR6E 5LL6R 4B3RE 2Z5BA 4DU7A 2Z5CA 4KQVA 1H73A 1UDOA 3H4LA 4DUYE 1PVGA 5C0XC 1EI1A 1XMQE 1K47A 3PYGA 1N0UA 2UU9E 1RR9A 4MU3A 4NXNE 5JEAC 1S16A 4U3DA 4DV3I 2UUBE 4DV1I 3T1YI 4BA1A 1B62A 4NXME 2UXBE 3M6AA 1QZRA 4LF8I 4IZKA 2IOQA 1H72C 2R42A 4Z7YA 1HNWI 3OTOE 1Z5CA 4FW9A 4DPTA 4LF7E 1HR0E 5K36C 3DD6A 3ZKBA 4P52A 1Z0BA 1ELOA 1A6FA 2PNZA 1Z0GA 5L3JA 1VI7A 2A2DA 1IBME 4I3HA 4DV7E 5DNLA 2HKEA 1UDSA 2WP8B 2UXCI 4URLA 4DR3I 4LCGA 1Z5BA 2ZBKB 1HNXI 5IWAI 1Z0CA 4DR1E 1BKNA 2WW4A 3J7AG 3J80Q 1N0VC 2BM0A 3WU4A 5LMUI 1ZM3A 2BA0G 3CDJA 4FW3A 3JAMC 1EA6A 4JYAI 3GCMA 4JI5E 4IFDC 4U3BA 1USUA 1IBKE 3U1YA 4FW5A 4JI0I 4DPXA 5LMNI 1Y5YA 3M85D 4X65I 2UUCI 2WNRB 4FW6A 5FLXQ 1XNRE 2O3ZA 1D6TA 1NHJA 1J5EE 4JI7I 1XNQE 1FKAE 3P06A 1UDNA 4BA1B 4USMA 4DV4I 1MG7A 4IZKB 4AM3A 4LF6E 3B82A 4K0KE 1OYPA 1ZXNA 3P76A 2A2CA 2VQEE 4DV2I 4DV5I 4QNJA 3KRNA 2GO4A 2NN6D 2GO3A 4B3SI 1RREA 2X7IA 3CWVA 2PNZB 3PYEA 1N34E 4LPFA 1XMOE 2HHHI 4ED4A 2UUAE 1N36E 2WP8A 4UT4A 1WUUA 4FW7A 2PO0B 2CVEA 1ZM4A 3PS1A 2F4VE 3GMEA 3LNUA 2JEAA 3PS2A 4DR6I 4PRVA 1N33I 3NZKA 2CG9A 1NHIA 1KKHA 1HNZE 4LFAE 5DRPA 5A2QC 4FW4A 5C0XD 1YHCA 3QT5A 4LF4E 4DUYI 5BR8I 4FWHA 4DUZE 2DEIA 5ELWA 1PIEA 4KHPI 1FWLA 4IZJB 5EL9A 4LFCI 4OKGA 2WNRA 4JI3E 2NN6F 3P3CA 4OO1F 4AQYI 2CZ9A 4LCFA 2VQFI 3L7ZB 3PRYA 1Z0TA 1Z0WA 5IT9C 4JI4I 4GKKI 4YHHE 4DV0I 4DR2I 2F1DA 4LF7I 3M85G 1HR0I 4B3MI 2E5LI 3B4TA 2NN6B 1KIJA 4HYMA 2AE8A 2PNLA 2Z5EA 4LF9I 2C38A 1IBLE 2HK3A 5C0XF 3HULA 4NBQA 1IBMI 3P3GA 5JEAF 4JI6E 1Y6ZA 4DU8A 2VF3A 2PO0A 4DR1I 1KTVA 4MU4A 1XXEA 1USVA 4X66I 4FWDA 4DPYA 5C0XB 3P3EA 2BM1A 4DR5E 4DV6I 4LF8E 3T1HE 2JEAB 4IFDD 4LFBI 2HFSA 1RHYA 2CGEA 5DRRA 4YY3I 1MU5A 1U2RA 5K36F 3PYDA 3HJCA 4JI2E 4GKJE 3K1JA 1UDQA 2OI2A 4LF5E 4JV5E 4LCHA 4PU9A 4WUBA 4JG4A 4IZJA 1N32E 1XNRI 4J3DA 4B3TI 2GS8A 5GMDA 5K36B 2HFUA 1XNQI 1I94E 2UXCE 3D4JA 1UEKA 2ZM6I 3CDIA 1HNXE 1Z0VA 3L7ZA 4IZJD 3J80C 2PNMA 1FNMA 2GQ0A 2V2ZA 4OX9I 1ZM9A 3J7AM 4JI8E 2V8PA 4PRXA 4OZEA 5LMUE 4DR7E 4X62I 2NN6A 4IFDF 4OO1A 4JYAE 3LPSA 2VQEI 4DXLA 3ZZUA 2C38B 4R1FA 4LOMA 1XMOI 2UUAI 4JI1E 1N36I 5FLXC 4X65E 4M1KA 4OO1D 1Y60A 2PO1B 3J81Q 2UXDE 3QT6A 3ZKDA 4IFDB 2VESA 4JI7E 5C0XA 1HNZI 4DR4I 1NZ0A 1MX0A 1FJGE 4B3RI 5JEAA 4LF4I 3PS3A 2BA1D 1H7SA 4MDTA 1S4EA 4DUZI 1H7UA 3F0NA 1XHKA 2IOPA 3Q6MA 4X64E 3Q6NA 4HXZA 3M7ND 3LTOA 1XMQI 4HACB 5JEAD 2J65A 2UU9I 2JE6B 3K85A 4NXNI 2BR2B 3HKMA 5K36A 3ZM7A 2UUBI 3UHMA 4DPWA 3QT7A 4NXMI 2UXBI 3GONA 2AJ4A 2NN6E 2XEXA 2ZITA 3K17A 4OO1E 4FWGA 1N33E 3OTOI 5K36D 2LJPA 1HK7A 2Q2EB 1IBLI 1VISA 4HY1A 5BR8E 4OO1B 2C37B 2IESA 3V5RA 4JI6I 4KHPE 4IS9A 1OYRA 3WU6A 4LFCE 4DV7I 5FWKA 1E3PA 1NHHA 1Y4SA 2PO1A 2X36A 5C0XE 2BV3A 4IFDA 4AQYE 1Z59A 4DR5I 1FI4A 2V2QA 1Y4UA 1R6MA 2VQFE 3T1HI 1Z5AA 5JEAE 2JEBB 4DV3E 4QNKA 4DV1E 3GLLA 4JI4E 4GKKE 1E3HA 3ZZTA 3T1YE 4DV0E 4DR2E 4BA2B 3QT8A 4JI2I 2E1RA 4B3ME 4GKJI 4MQYA 2E5LE 5JEAB 3V2UC 4LF5I 1HNWE 4JI5I 4JV5I 4LF9E 3ZZ0A 3JAMQ 1OYSA 5GMEA 1N32I 2C39B 1IBKI 2O1UA 3PYFA 2JT2A 5K36E 4P7AA 4HACA 1FWKA 1OJ4A 2JE6A 2O1WA 4WUCA 1I94I 2BR2A 5DRQA 2BA1G 2HK2A 1J5EI 2PO2B 4AIDA 4ISAA 3B78A 5DROA 4X66E 4DR3E 3M7NG 3WU3A 4JI8I 4DPUA 5IWAE 3WU5A 4DR7I 4DV6E 4USKA 4LFBE 3B8HA 4AIMA 4YY3E 4LF6I 2O1TA 2EFGA 4N3OA 4K0KI 2Z5BB 4WUDA 2Z5CB 4JI1I 1KVKA 2C37A
chains in the Genus database with same CATH topology
4J3DA 4FW4A 1XXEA 5DRQA 4LCGA 1YHCA 3P76A 1P42A 5DRPA 4FW6A 3P3EA 2GO4A 2GO3A 4ISAA 2O3ZA 5DROA 2J65A 4MQYA 5DRRA 2IESA 4FW7A 4OKGA 2VESA 4IS9A 4FW3A 3PS1A 3P3CA 3P3GA 4OZEA 1YH8A 3PS2A 2JT2A 3UHMA 4LCHA 4LCFA 2IERA 4U3DA 4U3BA 3NZKA 3PS3A 3U1YA 4FW5A 4MDTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J3D A;  4FW4 A;  1XXE A;  5DRQ A;  4LCG A;  1YHC A;  3P76 A;  1P42 A;  5DRP A;  4FW6 A;  3P3E A;  2GO4 A;  2GO3 A;  4ISA A;  2O3Z A;  5DRO A;  2J65 A;  4MQY A;  5DRR A;  2IES A;  4FW7 A;  4OKG A;  2VES A;  4IS9 A;  4FW3 A;  3PS1 A;  3P3C A;  3P3G A;  4OZE A;  1YH8 A;  3PS2 A;  2JT2 A;  3UHM A;  4LCH A;  4LCF A;  2IER A;  4U3D A;  4U3B A;  3NZK A;  3PS3 A;  3U1Y A;  4FW5 A;  4MDT A; 
#chains in the Genus database with same CATH topology
 2V34 A;  1Z0E A;  4FN5 A;  4Z7C A;  1P42 A;  1N34 I;  2R3V A;  4IFD E;  2UXD I;  3U1K A;  5LMN E;  4JI0 E;  1PKP A;  4B3T E;  4XTJ A;  5EKW A;  2UUC E;  1ZXM A;  2F4V I;  2ZM6 E;  4ZVI A;  1FJG I;  4OX9 E;  2JEB A;  2J7K A;  4EMD A;  4LFA I;  4BA2 A;  4MU0 A;  2IER A;  4X64 I;  4DV4 E;  3Q1Q A;  4X62 E;  5A2Q Q;  1R6L A;  4MYU A;  2DEJ A;  2C39 A;  1H74 A;  2HKJ A;  2NPF A;  3J81 C;  4DV2 E;  4DV5 E;  4JI3 I;  2BA0 D;  4B3S E;  1DAR A;  5DNX A;  1ZM2 A;  3H1C A;  2HHH E;  2NN6 C;  2PO2 A;  4MYT A;  4OO1 C;  4MU1 A;  1YH8 A;  4RPF A;  4UTG A;  2O1V A;  4YHH I;  4GQU A;  4DR4 E;  2V2V A;  5IT9 Q;  1B63 A;  4DR6 E;  5LL6 R;  4B3R E;  2Z5B A;  4DU7 A;  2Z5C A;  4KQV A;  1H73 A;  1UDO A;  3H4L A;  4DUY E;  1PVG A;  5C0X C;  1EI1 A;  1XMQ E;  1K47 A;  3PYG A;  1N0U A;  2UU9 E;  1RR9 A;  4MU3 A;  4NXN E;  5JEA C;  1S16 A;  4U3D A;  4DV3 I;  2UUB E;  4DV1 I;  3T1Y I;  4BA1 A;  1B62 A;  4NXM E;  2UXB E;  3M6A A;  1QZR A;  4LF8 I;  4IZK A;  2IOQ A;  1H72 C;  2R42 A;  4Z7Y A;  1HNW I;  3OTO E;  1Z5C A;  4FW9 A;  4DPT A;  4LF7 E;  1HR0 E;  5K36 C;  3DD6 A;  3ZKB A;  4P52 A;  1Z0B A;  1ELO A;  1A6F A;  2PNZ A;  1Z0G A;  5L3J A;  1VI7 A;  2A2D A;  1IBM E;  4I3H A;  4DV7 E;  5DNL A;  2HKE A;  1UDS A;  2WP8 B;  2UXC I;  4URL A;  4DR3 I;  4LCG A;  1Z5B A;  2ZBK B;  1HNX I;  5IWA I;  1Z0C A;  4DR1 E;  1BKN A;  2WW4 A;  3J7A G;  3J80 Q;  1N0V C;  2BM0 A;  3WU4 A;  5LMU I;  1ZM3 A;  2BA0 G;  3CDJ A;  4FW3 A;  3JAM C;  1EA6 A;  4JYA I;  3GCM A;  4JI5 E;  4IFD C;  4U3B A;  1USU A;  1IBK E;  3U1Y A;  4FW5 A;  4JI0 I;  4DPX A;  5LMN I;  1Y5Y A;  3M85 D;  4X65 I;  2UUC I;  2WNR B;  4FW6 A;  5FLX Q;  1XNR E;  2O3Z A;  1D6T A;  1NHJ A;  1J5E E;  4JI7 I;  1XNQ E;  1FKA E;  3P06 A;  1UDN A;  4BA1 B;  4USM A;  4DV4 I;  1MG7 A;  4IZK B;  4AM3 A;  4LF6 E;  3B82 A;  4K0K E;  1OYP A;  1ZXN A;  3P76 A;  2A2C A;  2VQE E;  4DV2 I;  4DV5 I;  4QNJ A;  3KRN A;  2GO4 A;  2NN6 D;  2GO3 A;  4B3S I;  1RRE A;  2X7I A;  3CWV A;  2PNZ B;  3PYE A;  1N34 E;  4LPF A;  1XMO E;  2HHH I;  4ED4 A;  2UUA E;  1N36 E;  2WP8 A;  4UT4 A;  1WUU A;  4FW7 A;  2PO0 B;  2CVE A;  1ZM4 A;  3PS1 A;  2F4V E;  3GME A;  3LNU A;  2JEA A;  3PS2 A;  4DR6 I;  4PRV A;  1N33 I;  3NZK A;  2CG9 A;  1NHI A;  1KKH A;  1HNZ E;  4LFA E;  5DRP A;  5A2Q C;  4FW4 A;  5C0X D;  1YHC A;  3QT5 A;  4LF4 E;  4DUY I;  5BR8 I;  4FWH A;  4DUZ E;  2DEI A;  5ELW A;  1PIE A;  4KHP I;  1FWL A;  4IZJ B;  5EL9 A;  4LFC I;  4OKG A;  2WNR A;  4JI3 E;  2NN6 F;  3P3C A;  4OO1 F;  4AQY I;  2CZ9 A;  4LCF A;  2VQF I;  3L7Z B;  3PRY A;  1Z0T A;  1Z0W A;  5IT9 C;  4JI4 I;  4GKK I;  4YHH E;  4DV0 I;  4DR2 I;  2F1D A;  4LF7 I;  3M85 G;  1HR0 I;  4B3M I;  2E5L I;  3B4T A;  2NN6 B;  1KIJ A;  4HYM A;  2AE8 A;  2PNL A;  2Z5E A;  4LF9 I;  2C38 A;  1IBL E;  2HK3 A;  5C0X F;  3HUL A;  4NBQ A;  1IBM I;  3P3G A;  5JEA F;  4JI6 E;  1Y6Z A;  4DU8 A;  2VF3 A;  2PO0 A;  4DR1 I;  1KTV A;  4MU4 A;  1XXE A;  1USV A;  4X66 I;  4FWD A;  4DPY A;  5C0X B;  3P3E A;  2BM1 A;  4DR5 E;  4DV6 I;  4LF8 E;  3T1H E;  2JEA B;  4IFD D;  4LFB I;  2HFS A;  1RHY A;  2CGE A;  5DRR A;  4YY3 I;  1MU5 A;  1U2R A;  5K36 F;  3PYD A;  3HJC A;  4JI2 E;  4GKJ E;  3K1J A;  1UDQ A;  2OI2 A;  4LF5 E;  4JV5 E;  4LCH A;  4PU9 A;  4WUB A;  4JG4 A;  4IZJ A;  1N32 E;  1XNR I;  4J3D A;  4B3T I;  2GS8 A;  5GMD A;  5K36 B;  2HFU A;  1XNQ I;  1I94 E;  2UXC E;  3D4J A;  1UEK A;  2ZM6 I;  3CDI A;  1HNX E;  1Z0V A;  3L7Z A;  4IZJ D;  3J80 C;  2PNM A;  1FNM A;  2GQ0 A;  2V2Z A;  4OX9 I;  1ZM9 A;  3J7A M;  4JI8 E;  2V8P A;  4PRX A;  4OZE A;  5LMU E;  4DR7 E;  4X62 I;  2NN6 A;  4IFD F;  4OO1 A;  4JYA E;  3LPS A;  2VQE I;  4DXL A;  3ZZU A;  2C38 B;  4R1F A;  4LOM A;  1XMO I;  2UUA I;  4JI1 E;  1N36 I;  5FLX C;  4X65 E;  4M1K A;  4OO1 D;  1Y60 A;  2PO1 B;  3J81 Q;  2UXD E;  3QT6 A;  3ZKD A;  4IFD B;  2VES A;  4JI7 E;  5C0X A;  1HNZ I;  4DR4 I;  1NZ0 A;  1MX0 A;  1FJG E;  4B3R I;  5JEA A;  4LF4 I;  3PS3 A;  2BA1 D;  1H7S A;  4MDT A;  1S4E A;  4DUZ I;  1H7U A;  3F0N A;  1XHK A;  2IOP A;  3Q6M A;  4X64 E;  3Q6N A;  4HXZ A;  3M7N D;  3LTO A;  1XMQ I;  4HAC B;  5JEA D;  2J65 A;  2UU9 I;  2JE6 B;  3K85 A;  4NXN I;  2BR2 B;  3HKM A;  5K36 A;  3ZM7 A;  2UUB I;  3UHM A;  4DPW A;  3QT7 A;  4NXM I;  2UXB I;  3GON A;  2AJ4 A;  2NN6 E;  2XEX A;  2ZIT A;  3K17 A;  4OO1 E;  4FWG A;  1N33 E;  3OTO I;  5K36 D;  2LJP A;  1HK7 A;  2Q2E B;  1IBL I;  1VIS A;  4HY1 A;  5BR8 E;  4OO1 B;  2C37 B;  2IES A;  3V5R A;  4JI6 I;  4KHP E;  4IS9 A;  1OYR A;  3WU6 A;  4LFC E;  4DV7 I;  5FWK A;  1E3P A;  1NHH A;  1Y4S A;  2PO1 A;  2X36 A;  5C0X E;  2BV3 A;  4IFD A;  4AQY E;  1Z59 A;  4DR5 I;  1FI4 A;  2V2Q A;  1Y4U A;  1R6M A;  2VQF E;  3T1H I;  1Z5A A;  5JEA E;  2JEB B;  4DV3 E;  4QNK A;  4DV1 E;  3GLL A;  4JI4 E;  4GKK E;  1E3H A;  3ZZT A;  3T1Y E;  4DV0 E;  4DR2 E;  4BA2 B;  3QT8 A;  4JI2 I;  2E1R A;  4B3M E;  4GKJ I;  4MQY A;  2E5L E;  5JEA B;  3V2U C;  4LF5 I;  1HNW E;  4JI5 I;  4JV5 I;  4LF9 E;  3ZZ0 A;  3JAM Q;  1OYS A;  5GME A;  1N32 I;  2C39 B;  1IBK I;  2O1U A;  3PYF A;  2JT2 A;  5K36 E;  4P7A A;  4HAC A;  1FWK A;  1OJ4 A;  2JE6 A;  2O1W A;  4WUC A;  1I94 I;  2BR2 A;  5DRQ A;  2BA1 G;  2HK2 A;  1J5E I;  2PO2 B;  4AID A;  4ISA A;  3B78 A;  5DRO A;  4X66 E;  4DR3 E;  3M7N G;  3WU3 A;  4JI8 I;  4DPU A;  5IWA E;  3WU5 A;  4DR7 I;  4DV6 E;  4USK A;  4LFB E;  3B8H A;  4AIM A;  4YY3 E;  4LF6 I;  2O1T A;  2EFG A;  4N3O A;  4K0K I;  2Z5B B;  4WUD A;  2Z5C B;  4JI1 I;  1KVK A;  2C37 A; 
#chains in the Genus database with same CATH homology
 4J3D A;  4FW4 A;  1XXE A;  5DRQ A;  4LCG A;  1YHC A;  3P76 A;  1P42 A;  5DRP A;  4FW6 A;  3P3E A;  2GO4 A;  2GO3 A;  4ISA A;  2O3Z A;  5DRO A;  2J65 A;  4MQY A;  5DRR A;  2IES A;  4FW7 A;  4OKG A;  2VES A;  4IS9 A;  4FW3 A;  3PS1 A;  3P3C A;  3P3G A;  4OZE A;  1YH8 A;  3PS2 A;  2JT2 A;  3UHM A;  4LCH A;  4LCF A;  2IER A;  4U3D A;  4U3B A;  3NZK A;  3PS3 A;  3U1Y A;  4FW5 A;  4MDT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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