5DRPA

Structure of the aalpxc/lpc-023 complex
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
267
structure length
267
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Aquifex aeolicus (strain vf5)
total genus 92
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drpA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drpA02
3PS1A 4OKGA 4FW7A 5DRRA 5DROA 1YH8A 4U3BA 3P76A 4FW6A 4LCGA 4FW5A 5DRQA 3P3EA 4LCFA 5DRPA 4LCHA 3PS2A 4OZEA 4MQYA 2IERA 4FW3A 3PS3A 1YHCA 2GO3A 2J65A 2JT2A 4U3DA 3UHMA 4MDTA 2O3ZA 3P3GA 2GO4A 4ISAA 3NZKA 2VESA 4FW4A 1XXEA 2IESA 4J3DA 3U1YA 3P3CA 1P42A 4IS9A
chains in the Genus database with same CATH superfamily
4OO1B 5DROA 3GLLA 3ZZ0A 1HNXI 4X66I 4FW9A 4WUDA 2GO3A 2UUCI 4X62E 4B3ME 4QNJA 4N3OA 1FJGI 5K36A 1N32E 2X36A 3KRNA 3LTOA 4URLA 4LF5E 3J80Q 4DUYE 1PKPA 4LF7E 1N0UA 1ZXNA 2UU9I 4DV5I 2PNLA 3GONA 4LCHA 2WP8A 4OO1E 1NHJA 4JI8E 3J80C 1N33E 2Q2EB 4DR5E 2Z5EA 1B63A 4MDTA 2BR2B 5IT9Q 4B3TE 4LOMA 4JI3I 1J5EE 2HHHI 1HNWI 4DV3I 4GKKE 3B82A 4DV2I 4K0KE 4IS9A 4AIMA 2V8PA 4IZKA 3CDIA 4DV0E 2UXBI 1N36E 4JI6I 4KQVA 3LPSA 4DR3E 2PO0A 3ZZUA 4JYAI 1USVA 4DR7E 4DR4E 2J65A 1FI4A 1HNZE 2E1RA 4GKJE 3JAMQ 1KTVA 3M7NG 5K36B 3PYEA 4LFBE 4X65E 5IWAE 2CGEA 3GCMA 2HFSA 4XTJA 4R1FA 4LF8I 4JI2E 4IFDF 1DARA 1XHKA 4JI7E 4NXNE 4BA1A 2ZM6E 2Z5BA 3P3EA 1MU5A 2WP8B 2V2VA 2A2CA 1UDNA 3PYGA 1PIEA 3M85G 1KKHA 5L3JA 2JT2A 2AJ4A 1IBLE 2NN6D 3B78A 4DR6I 4AQYE 3J7AG 3CDJA 5C0XA 1Z0BA 4QNKA 4YHHE 3ZM7A 4B3RE 3F0NA 4DUZE 4OO1D 5K36E 4USKA 4IZKB 4P52A 4B3MI 1RHYA 2HFUA 2PO0B 1N32I 4JI5E 1OJ4A 1FNMA 4MQYA 4DUYI 4OX9I 1Z5AA 3V2UC 4LF7I 4I3HA 3QT6A 2OI2A 3K1JA 3WU6A 4RPFA 1IBME 2IOQA 4IFDA 4JI8I 4DXLA 2ZBKB 1N33I 4MU0A 1UDSA 5DNXA 1XNQI 4DR5I 5EKWA 1Y5YA 4BA1B 4PU9A 3WU3A 2Z5BB 2HK3A 4KHPI 3P76A 3H4LA 4B3TI 2VQFI 2UUAE 2BA1D 2EFGA 1J5EI 5GMEA 1I94I 5BR8I 4GKKI 1XNRE 2V2QA 4U3DA 4DV6E 4MU4A 3L7ZA 4DR1E 3HKMA 4FWHA 5C0XB 3U1KA 4JI1E 4DR3I 2J7KA 4LPFA 2UXDE 4FWDA 5JEAA 4LFAE 3K17A 4DR4I 4HACA 1Y60A 2UXCI 1HNZI 1S4EA 2VQEE 5LMNI 5A2QQ 4DV1I 1MX0A 2BA0G 1R6LA 2PNZA 1ZM4A 4LFBI 4X65I 1HR0I 4LF4E 2PO2A 2BM1A 4USMA 2CZ9A 2F1DA 1FWLA 4NXNI 4JI7I 2V34A 5ELWA 2O1WA 2WNRA 4IFDB 2HKJA 2NN6F 4NBQA 4MYTA 5DRQA 4B3SE 2V2ZA 5C0XE 3J81Q 5DRRA 3Q1QA 4OO1F 2UUBE 5IT9C 1EA6A 2NN6C 4GQUA 4YHHI 4LFCE 2R42A 2IERA 4B3RI 5GMDA 4DUZI 4FW3A 3PS3A 4IZJD 4M1KA 1NZ0A 4OO1C 3L7ZB 2O3ZA 2C38A 4X66E 3HJCA 1FWKA 4MYUA 3WU5A 5JEAB 4JI5I 4DPTA 1H73A 2IESA 4HACB 1UEKA 4OKGA 4DPYA 2E5LI 1XMOE 4LF9E 4IFDE 4LF6I 4U3BA 2PNZB 1Z0GA 1Z0WA 1FJGE 3QT7A 3JAMC 1EI1A 1VI7A 1IBMI 1WUUA 2PO2B 2O1UA 1B62A 1H7UA 4BA2A 1Y6ZA 3UHMA 2UU9E 4DV5E 4AIDA 2PO1A 1H72C 2WNRB 3DD6A 2NN6A 2UUAI 2VESA 1OYRA 2LJPA 5LL6R 2F4VE 1UDQA 1XNRI 1KVKA 4J3DA 1RR9A 2PNMA 1MG7A 1OYPA 4DV7E 1YH8A 5JEAE 4X62I 3M6AA 1Z0CA 4FW6A 4DR1I 4X64E 4JI1I 4JI3E 1HNWE 1NHIA 2UXDI 4LFAI 3PS2A 1Z0EA 4LF5I 3LNUA 4YY3E 2C38B 5C0XD 2VQEI 2UXBE 4JI6E 3NZKA 1XXEA 4JYAE 3T1HE 1USUA 2JE6A 2BV3A 5DRPA 2BM0A 4OZEA 4ED4A 1Y4SA 4LF8E 4B3SI 1Z5BA 4K0KI 4BA2B 1R6MA 1YHCA 1Z0TA 1A6FA 2PO1B 3ZZTA 4DV4E 1N34E 3D4JA 3P3GA 2GO4A 4NXME 4DV0I 1N36I 4WUCA 1Z59A 4LFCI 4JI4E 3OTOE 4DPXA 4HXZA 5EL9A 4DR7I 4Z7YA 5FLXQ 4JV5E 4DR6E 4LCFA 4GKJI 4DR2E 1VISA 4DU7A 5IWAI 2O1VA 3J7AM 1PVGA 3ZKDA 3H1CA 3V5RA 4JI2I 1XMOI 5FLXC 4LF9I 4MU3A 4DPWA 1IBKE 1RREA 3GMEA 2ZM6I 4JI0E 5K36D 2ZITA 4FW4A 5A2QC 5JEAD 1ZM3A 2JEBA 3U1YA 4OX9E 3P3CA 1H74A 2JEAA 2BA1G 2NN6E 1XMQE 1Z5CA 3PYDA 3M7ND 2HK2A 4FW7A 1IBLI 2JE6B 3T1YE 4UT4A 5LMUE 4PRXA 4AQYI 2F4VI 4HY1A 2DEJA 1UDOA 4MU1A 1OYSA 2C37A 2HKEA 1FKAE 1ZXMA 1XNQE 2WW4A 2O1TA 3B4TA 4DV7I 4IZJA 4Z7CA 3J81C 4KHPE 4AM3A 5DNLA 4X64I 2VQFE 1HNXE 1I94E 5BR8E 3M85D 1HK7A 5C0XF 1KIJA 4FN5A 3PS1A 4ZVIA 2CVEA 2UUCE 4YY3I 1D6TA 1K47A 5C0XC 2X7IA 1ZM9A 4UTGA 2UXCE 3K85A 3T1HI 2XEXA 2Z5CA 1ZM2A 5FWKA 3PRYA 2C39A 4DU8A 5LMNE 4DV1E 4ISAA 1HR0E 2JEBB 3P06A 4FWGA 2JEAB 1U2RA 1E3PA 1P42A 3B8HA 1BKNA 1S16A 2DEIA 4DV4I 4OO1A 1N34I 4DV6I 2CG9A 4P7AA 4LCGA 4NXMI 2GS8A 4HYMA 3Q6NA 2HHHE 4IFDC 3ZKBA 2C37B 4JI4I 3OTOI 4DV3E 4DV2E 4IZJB 2GQ0A 1QZRA 1Z0VA 3WU4A 4JV5I 1N0VC 4DPUA 2R3VA 2VF3A 4DR2I 2A2DA 1NHHA 3HULA 3CWVA 1ELOA 4LF4I 5K36F 5JEAF 4JG4A 1IBKI 4FW5A 4JI0I 4WUBA 2IOPA 1H7SA 5K36C 5JEAC 2AE8A 1Y4UA 4EMDA 1XMQI 2NPFA 2Z5CB 2E5LE 2BA0D 1E3HA 3PYFA 2C39B 3QT8A 4LF6E 3T1YI 3Q6MA 4PRVA 5LMUI 2BR2A 2NN6B 2UUBI 4IFDD 3QT5A
chains in the Genus database with same CATH topology
3PS1A 4OKGA 4FW7A 5DRRA 5DROA 1YH8A 4U3BA 3P76A 4FW6A 4LCGA 4FW5A 5DRQA 3P3EA 4LCFA 5DRPA 4LCHA 3PS2A 4OZEA 4MQYA 2IERA 4FW3A 3PS3A 1YHCA 2GO3A 2J65A 2JT2A 4U3DA 3UHMA 4MDTA 2O3ZA 3P3GA 2GO4A 4ISAA 3NZKA 2VESA 4FW4A 1XXEA 2IESA 4J3DA 3U1YA 3P3CA 1P42A 4IS9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PS1 A;  4OKG A;  4FW7 A;  5DRR A;  5DRO A;  1YH8 A;  4U3B A;  3P76 A;  4FW6 A;  4LCG A;  4FW5 A;  5DRQ A;  3P3E A;  4LCF A;  5DRP A;  4LCH A;  3PS2 A;  4OZE A;  4MQY A;  2IER A;  4FW3 A;  3PS3 A;  1YHC A;  2GO3 A;  2J65 A;  2JT2 A;  4U3D A;  3UHM A;  4MDT A;  2O3Z A;  3P3G A;  2GO4 A;  4ISA A;  3NZK A;  2VES A;  4FW4 A;  1XXE A;  2IES A;  4J3D A;  3U1Y A;  3P3C A;  1P42 A;  4IS9 A; 
#chains in the Genus database with same CATH topology
 4OO1 B;  5DRO A;  3GLL A;  3ZZ0 A;  1HNX I;  4X66 I;  4FW9 A;  4WUD A;  2GO3 A;  2UUC I;  4X62 E;  4B3M E;  4QNJ A;  4N3O A;  1FJG I;  5K36 A;  1N32 E;  2X36 A;  3KRN A;  3LTO A;  4URL A;  4LF5 E;  3J80 Q;  4DUY E;  1PKP A;  4LF7 E;  1N0U A;  1ZXN A;  2UU9 I;  4DV5 I;  2PNL A;  3GON A;  4LCH A;  2WP8 A;  4OO1 E;  1NHJ A;  4JI8 E;  3J80 C;  1N33 E;  2Q2E B;  4DR5 E;  2Z5E A;  1B63 A;  4MDT A;  2BR2 B;  5IT9 Q;  4B3T E;  4LOM A;  4JI3 I;  1J5E E;  2HHH I;  1HNW I;  4DV3 I;  4GKK E;  3B82 A;  4DV2 I;  4K0K E;  4IS9 A;  4AIM A;  2V8P A;  4IZK A;  3CDI A;  4DV0 E;  2UXB I;  1N36 E;  4JI6 I;  4KQV A;  3LPS A;  4DR3 E;  2PO0 A;  3ZZU A;  4JYA I;  1USV A;  4DR7 E;  4DR4 E;  2J65 A;  1FI4 A;  1HNZ E;  2E1R A;  4GKJ E;  3JAM Q;  1KTV A;  3M7N G;  5K36 B;  3PYE A;  4LFB E;  4X65 E;  5IWA E;  2CGE A;  3GCM A;  2HFS A;  4XTJ A;  4R1F A;  4LF8 I;  4JI2 E;  4IFD F;  1DAR A;  1XHK A;  4JI7 E;  4NXN E;  4BA1 A;  2ZM6 E;  2Z5B A;  3P3E A;  1MU5 A;  2WP8 B;  2V2V A;  2A2C A;  1UDN A;  3PYG A;  1PIE A;  3M85 G;  1KKH A;  5L3J A;  2JT2 A;  2AJ4 A;  1IBL E;  2NN6 D;  3B78 A;  4DR6 I;  4AQY E;  3J7A G;  3CDJ A;  5C0X A;  1Z0B A;  4QNK A;  4YHH E;  3ZM7 A;  4B3R E;  3F0N A;  4DUZ E;  4OO1 D;  5K36 E;  4USK A;  4IZK B;  4P52 A;  4B3M I;  1RHY A;  2HFU A;  2PO0 B;  1N32 I;  4JI5 E;  1OJ4 A;  1FNM A;  4MQY A;  4DUY I;  4OX9 I;  1Z5A A;  3V2U C;  4LF7 I;  4I3H A;  3QT6 A;  2OI2 A;  3K1J A;  3WU6 A;  4RPF A;  1IBM E;  2IOQ A;  4IFD A;  4JI8 I;  4DXL A;  2ZBK B;  1N33 I;  4MU0 A;  1UDS A;  5DNX A;  1XNQ I;  4DR5 I;  5EKW A;  1Y5Y A;  4BA1 B;  4PU9 A;  3WU3 A;  2Z5B B;  2HK3 A;  4KHP I;  3P76 A;  3H4L A;  4B3T I;  2VQF I;  2UUA E;  2BA1 D;  2EFG A;  1J5E I;  5GME A;  1I94 I;  5BR8 I;  4GKK I;  1XNR E;  2V2Q A;  4U3D A;  4DV6 E;  4MU4 A;  3L7Z A;  4DR1 E;  3HKM A;  4FWH A;  5C0X B;  3U1K A;  4JI1 E;  4DR3 I;  2J7K A;  4LPF A;  2UXD E;  4FWD A;  5JEA A;  4LFA E;  3K17 A;  4DR4 I;  4HAC A;  1Y60 A;  2UXC I;  1HNZ I;  1S4E A;  2VQE E;  5LMN I;  5A2Q Q;  4DV1 I;  1MX0 A;  2BA0 G;  1R6L A;  2PNZ A;  1ZM4 A;  4LFB I;  4X65 I;  1HR0 I;  4LF4 E;  2PO2 A;  2BM1 A;  4USM A;  2CZ9 A;  2F1D A;  1FWL A;  4NXN I;  4JI7 I;  2V34 A;  5ELW A;  2O1W A;  2WNR A;  4IFD B;  2HKJ A;  2NN6 F;  4NBQ A;  4MYT A;  5DRQ A;  4B3S E;  2V2Z A;  5C0X E;  3J81 Q;  5DRR A;  3Q1Q A;  4OO1 F;  2UUB E;  5IT9 C;  1EA6 A;  2NN6 C;  4GQU A;  4YHH I;  4LFC E;  2R42 A;  2IER A;  4B3R I;  5GMD A;  4DUZ I;  4FW3 A;  3PS3 A;  4IZJ D;  4M1K A;  1NZ0 A;  4OO1 C;  3L7Z B;  2O3Z A;  2C38 A;  4X66 E;  3HJC A;  1FWK A;  4MYU A;  3WU5 A;  5JEA B;  4JI5 I;  4DPT A;  1H73 A;  2IES A;  4HAC B;  1UEK A;  4OKG A;  4DPY A;  2E5L I;  1XMO E;  4LF9 E;  4IFD E;  4LF6 I;  4U3B A;  2PNZ B;  1Z0G A;  1Z0W A;  1FJG E;  3QT7 A;  3JAM C;  1EI1 A;  1VI7 A;  1IBM I;  1WUU A;  2PO2 B;  2O1U A;  1B62 A;  1H7U A;  4BA2 A;  1Y6Z A;  3UHM A;  2UU9 E;  4DV5 E;  4AID A;  2PO1 A;  1H72 C;  2WNR B;  3DD6 A;  2NN6 A;  2UUA I;  2VES A;  1OYR A;  2LJP A;  5LL6 R;  2F4V E;  1UDQ A;  1XNR I;  1KVK A;  4J3D A;  1RR9 A;  2PNM A;  1MG7 A;  1OYP A;  4DV7 E;  1YH8 A;  5JEA E;  4X62 I;  3M6A A;  1Z0C A;  4FW6 A;  4DR1 I;  4X64 E;  4JI1 I;  4JI3 E;  1HNW E;  1NHI A;  2UXD I;  4LFA I;  3PS2 A;  1Z0E A;  4LF5 I;  3LNU A;  4YY3 E;  2C38 B;  5C0X D;  2VQE I;  2UXB E;  4JI6 E;  3NZK A;  1XXE A;  4JYA E;  3T1H E;  1USU A;  2JE6 A;  2BV3 A;  5DRP A;  2BM0 A;  4OZE A;  4ED4 A;  1Y4S A;  4LF8 E;  4B3S I;  1Z5B A;  4K0K I;  4BA2 B;  1R6M A;  1YHC A;  1Z0T A;  1A6F A;  2PO1 B;  3ZZT A;  4DV4 E;  1N34 E;  3D4J A;  3P3G A;  2GO4 A;  4NXM E;  4DV0 I;  1N36 I;  4WUC A;  1Z59 A;  4LFC I;  4JI4 E;  3OTO E;  4DPX A;  4HXZ A;  5EL9 A;  4DR7 I;  4Z7Y A;  5FLX Q;  4JV5 E;  4DR6 E;  4LCF A;  4GKJ I;  4DR2 E;  1VIS A;  4DU7 A;  5IWA I;  2O1V A;  3J7A M;  1PVG A;  3ZKD A;  3H1C A;  3V5R A;  4JI2 I;  1XMO I;  5FLX C;  4LF9 I;  4MU3 A;  4DPW A;  1IBK E;  1RRE A;  3GME A;  2ZM6 I;  4JI0 E;  5K36 D;  2ZIT A;  4FW4 A;  5A2Q C;  5JEA D;  1ZM3 A;  2JEB A;  3U1Y A;  4OX9 E;  3P3C A;  1H74 A;  2JEA A;  2BA1 G;  2NN6 E;  1XMQ E;  1Z5C A;  3PYD A;  3M7N D;  2HK2 A;  4FW7 A;  1IBL I;  2JE6 B;  3T1Y E;  4UT4 A;  5LMU E;  4PRX A;  4AQY I;  2F4V I;  4HY1 A;  2DEJ A;  1UDO A;  4MU1 A;  1OYS A;  2C37 A;  2HKE A;  1FKA E;  1ZXM A;  1XNQ E;  2WW4 A;  2O1T A;  3B4T A;  4DV7 I;  4IZJ A;  4Z7C A;  3J81 C;  4KHP E;  4AM3 A;  5DNL A;  4X64 I;  2VQF E;  1HNX E;  1I94 E;  5BR8 E;  3M85 D;  1HK7 A;  5C0X F;  1KIJ A;  4FN5 A;  3PS1 A;  4ZVI A;  2CVE A;  2UUC E;  4YY3 I;  1D6T A;  1K47 A;  5C0X C;  2X7I A;  1ZM9 A;  4UTG A;  2UXC E;  3K85 A;  3T1H I;  2XEX A;  2Z5C A;  1ZM2 A;  5FWK A;  3PRY A;  2C39 A;  4DU8 A;  5LMN E;  4DV1 E;  4ISA A;  1HR0 E;  2JEB B;  3P06 A;  4FWG A;  2JEA B;  1U2R A;  1E3P A;  1P42 A;  3B8H A;  1BKN A;  1S16 A;  2DEI A;  4DV4 I;  4OO1 A;  1N34 I;  4DV6 I;  2CG9 A;  4P7A A;  4LCG A;  4NXM I;  2GS8 A;  4HYM A;  3Q6N A;  2HHH E;  4IFD C;  3ZKB A;  2C37 B;  4JI4 I;  3OTO I;  4DV3 E;  4DV2 E;  4IZJ B;  2GQ0 A;  1QZR A;  1Z0V A;  3WU4 A;  4JV5 I;  1N0V C;  4DPU A;  2R3V A;  2VF3 A;  4DR2 I;  2A2D A;  1NHH A;  3HUL A;  3CWV A;  1ELO A;  4LF4 I;  5K36 F;  5JEA F;  4JG4 A;  1IBK I;  4FW5 A;  4JI0 I;  4WUB A;  2IOP A;  1H7S A;  5K36 C;  5JEA C;  2AE8 A;  1Y4U A;  4EMD A;  1XMQ I;  2NPF A;  2Z5C B;  2E5L E;  2BA0 D;  1E3H A;  3PYF A;  2C39 B;  3QT8 A;  4LF6 E;  3T1Y I;  3Q6M A;  4PRV A;  5LMU I;  2BR2 A;  2NN6 B;  2UUB I;  4IFD D;  3QT5 A; 
#chains in the Genus database with same CATH homology
 3PS1 A;  4OKG A;  4FW7 A;  5DRR A;  5DRO A;  1YH8 A;  4U3B A;  3P76 A;  4FW6 A;  4LCG A;  4FW5 A;  5DRQ A;  3P3E A;  4LCF A;  5DRP A;  4LCH A;  3PS2 A;  4OZE A;  4MQY A;  2IER A;  4FW3 A;  3PS3 A;  1YHC A;  2GO3 A;  2J65 A;  2JT2 A;  4U3D A;  3UHM A;  4MDT A;  2O3Z A;  3P3G A;  2GO4 A;  4ISA A;  3NZK A;  2VES A;  4FW4 A;  1XXE A;  2IES A;  4J3D A;  3U1Y A;  3P3C A;  1P42 A;  4IS9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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