1XXEA

Rdc refined solution structure of the aalpxc/tu-514 complex
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
268
structure length
268
Chain Sequence
LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFCFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Refined Solution Structure of the LpxC-TU-514 Complex and pK(a) Analysis of an Active Site Histidine: Insights into the Mechanism and Inhibitor Design
pubmed doi rcsb
molecule tags Hydrolase
source organism Aquifex aeolicus
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 63
structure length 268
sequence length 268
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2004-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 1xxeA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 1xxeA02
4LCGA 2VESA 4FW5A 4LCHA 1YHCA 4OKGA 2IERA 2O3ZA 2GO4A 4LCFA 2IESA 1P42A 2JT2A 3NZKA 4FW6A 4MDTA 4MQYA 3UHMA 4J3DA 3P3CA 4U3BA 5DROA 5DRPA 3U1YA 3P3GA 3PS2A 4FW7A 1XXEA 3P3EA 3PS3A 3PS1A 1YH8A 4IS9A 5DRQA 4FW4A 4U3DA 3P76A 2GO3A 4ISAA 2J65A 5DRRA 4OZEA 4FW3A
chains in the Genus database with same CATH superfamily
4XTJA 4DV5I 3Q6MA 1FI4A 2O3ZA 1HNZI 4HYMA 2Q2EB 4NXNE 4JI1E 4AIMA 2VQFI 2UXDE 1J5EI 4LF8I 3T1YI 5K36A 2E1RA 3LTOA 2IOQA 4DPUA 3HJCA 2GS8A 1Z59A 1HNWE 2BR2A 4GQUA 4GKJE 4KQVA 4DPXA 1B62A 4JG4A 1Y4SA 4FW3A 2WNRA 4JI7E 2UXCE 2JE6A 4DUZE 4B3RE 1MG7A 4DR5E 1N32I 5L3JA 1PIEA 4NBQA 4X66I 4R1FA 1USUA 3WU6A 1Y6ZA 4J3DA 3P3CA 1I94I 3PYEA 2ZM6I 3P3GA 5LMNI 4LFCI 2PO2A 4MU0A 4JI2E 3V2UC 1N32E 3CDJA 4ISAA 2Z5EA 1MX0A 1N0UA 1BKNA 2BM1A 1I94E 4DR1E 4DR4E 1N34I 4DR7I 1IBKE 3J7AM 4K0KI 4LFCE 4IFDB 5IWAE 2C38B 4KHPE 2IESA 3QT6A 4MDTA 3UHMA 5LL6R 4DV1E 1XMQE 1XMOI 5K36F 1H73A 3PYFA 3WU5A 4DV0I 4M1KA 4RPFA 2NN6D 5A2QC 3LNUA 4QNJA 2EFGA 3P06A 4LF4I 1XMOE 1Z0GA 1MU5A 3ZM7A 2UUBE 2UUAE 3GCMA 4B3ME 3JAMC 4LF6I 4IFDA 2GO4A 1A6FA 2C38A 3T1HE 2VQEI 1IBMI 5K36E 3Q1QA 4ZVIA 4U3BA 2CGEA 2HFUA 3K1JA 1ZM3A 3U1YA 4LF4E 3B78A 4JI4I 1FWKA 1XXEA 3PS3A 4IZKA 1R6MA 1N0VC 4UTGA 4LF7I 1U2RA 4YHHI 1N36I 2WW4A 4LF5E 2O1VA 4DPTA 2CZ9A 3ZKDA 2PO1B 2XEXA 4JI4E 4USKA 4Z7YA 3H1CA 3NZKA 4FW6A 4YHHE 1H72C 1PKPA 3J81C 2E5LI 1UEKA 2GQ0A 5K36C 4YY3E 4DR3E 1FJGE 5FLXQ 1XNRI 4JI6I 2UUCI 4OO1B 5DNXA 2NPFA 3OTOI 4DXLA 4GKKE 1Z0BA 2E5LE 4FW9A 4HACB 5JEAB 3PYDA 4P52A 1NHJA 4FWGA 4LFBE 4IFDF 1KIJA 2DEJA 1OJ4A 2HK2A 2BA1G 1XNQI 4JYAE 1RHYA 2JEAB 4JV5E 4DV6E 4JI8I 2O1UA 2UXBI 2WP8B 3PYGA 2BA1D 1EA6A 2PNZB 4DV5E 2V34A 2PO0B 4OO1A 2IOPA 3J81Q 1HNZE 4DV7I 3GLLA 3QT7A 1OYSA 4X65I 1XNQE 1Z0VA 3M7ND 1XHKA 2VQFE 4IFDE 1J5EE 3L7ZB 4LF8E 3T1YE 4HACA 5JEAA 1YHCA 2HKEA 4DR6I 1VISA 1H7UA 2C37B 2UXBE 4USMA 2V2QA 4BA2B 4DV7E 2O1WA 3M85D 4FW7A 2WP8A 4DR6E 4JI3I 2PNZA 4X66E 4WUDA 3CWVA 1UDNA 4AQYI 5EKWA 3L7ZA 1VI7A 2ZM6E 5LMNE 1Y5YA 4IFDC 1OYPA 2ZBKB 5BR8I 1S4EA 4BA2A 1HR0I 4DV4I 2ZITA 2UU9I 3J80Q 4X64I 5C0XB 1H7SA 1UDOA 4PRVA 4AQYE 4DV2I 3B8HA 1N34E 4DR7E 4K0KE 4OO1F 1N33I 3B82A 5ELWA 2NN6B 4UT4A 4OZEA 1OYRA 4B3TI 1HK7A 4FWDA 1RR9A 5JEAF 4FWHA 5FLXC 1PVGA 3D4JA 4LPFA 4DR2I 4DV0E 1Y60A 1N33E 4MU1A 4HY1A 2CVEA 5DROA 4MYUA 4JI5I 3GMEA 2Z5CB 3PS2A 4OX9I 5C0XA 4OO1E 2JEBB 4Z7CA 2V8PA 4LFAI 4LF6E 5IT9Q 2VQEE 4DUYI 1IBME 5DRRA 3ZZ0A 4BA1B 5JEAE 4JI5E 4LCGA 4NXMI 4OX9E 4DU7A 1HNXI 1NZ0A 4LFAE 2PNMA 2Z5BB 1IBLI 4LF7E 1N36E 1Z5CA 1E3HA 4DUYE 1YH8A 3Q6NA 4IS9A 5DRQA 2X7IA 2JEBA 3M6AA 3P76A 4DU8A 2GO3A 4OO1C 1Z5AA 4IZJD 2HHHI 2PNLA 2V2ZA 2C39B 4JI0I 4BA1A 2J7KA 5JEAC 3WU4A 1Z0EA 1XNRE 2PO1A 5K36D 1FWLA 1P42A 4JI6E 5EL9A 4DV3I 2UUCE 2Z5BA 1ZM9A 4HXZA 4OO1D 3OTOE 5C0XF 1ZM4A 2HKJA 3M7NG 4NXNI 4JI1I 1DARA 4U3DA 2CG9A 3K17A 5LMUI 2NN6F 2BA0D 1Z0TA 2C39A 1QZRA 4I3HA 1HNWI 5FWKA 3WU3A 2O1TA 4LCHA 2BM0A 3J80C 1FKAE 4GKJI 2IERA 4JI8E 1KTVA 3M85G 2JT2A 4JI7I 3CDIA 2UXCI 2AE8A 5C0XE 1Y4UA 4DUZI 4B3RI 2PO2B 4DR5I 2JEAA 5LMUE 4X65E 1Z5BA 3B4TA 3PS1A 4X62I 3HULA 1Z0WA 2NN6E 2PO0A 1UDSA 4N3OA 4P7AA 1B63A 4JI2I 1UDQA 4FW5A 2F4VI 2HK3A 4LOMA 5GMDA 4B3SI 4EMDA 2C37A 3J7AG 4X62E 4DR1I 4DR4I 4JI3E 5GMEA 3DD6A 4PRXA 1IBKI 5IT9C 1H74A 5DRPA 5IWAI 5C0XC 4KHPI 2F4VE 4FW4A 4DV1I 1XMQI 4B3SE 2R3VA 3ZZUA 4FN5A 4MU3A 4IFDD 2NN6C 5BR8E 5DNLA 1HR0E 3PRYA 2A2DA 4DV4E 2UU9E 4X64E 1USVA 4DV2E 3KRNA 3ZZTA 5C0XD 4MQYA 3QT8A 2UUBI 2UUAI 4URLA 3V5RA 4B3MI 1KKHA 4IZKB 3P3EA 4QNKA 4B3TE 3U1KA 4DPWA 3T1HI 2A2CA 4MU4A 1Z0CA 1KVKA 4DR2E 1ZXNA 1S16A 3LPSA 3QT5A 3H4LA 4AIDA 4WUCA 2NN6A 4AM3A 4LF9I 4LCFA 1RREA 4LF5I 4PU9A 2LJPA 1WUUA 1ELOA 2VF3A 2Z5CA 1EI1A 4LF9E 2X36A 1D6TA 4NXME 3ZKBA 4YY3I 1HNXE 4DR3I 3F0NA 1FJGI 2OI2A 3GONA 4IZJB 1IBLE 2AJ4A 2VESA 1ZM2A 2HFSA 4OKGA 5A2QQ 3K85A 1E3PA 1FNMA 2F1DA 4GKKI 2DEIA 2V2VA 4DPYA 5K36B 2HHHE 3JAMQ 4LFBI 4WUBA 1K47A 4MYTA 2BV3A 4JI0E 2BR2B 1NHIA 2BA0G 1R6LA 2R42A 4JYAI 2UXDI 1ZXMA 5JEAD 4JV5I 4DV6I 2J65A 4ED4A 2WNRB 4DV3E 3HKMA 1NHHA 2JE6B 4IZJA
chains in the Genus database with same CATH topology
4LCGA 2VESA 4FW5A 4LCHA 1YHCA 4OKGA 2IERA 2O3ZA 2GO4A 4LCFA 2IESA 1P42A 2JT2A 3NZKA 4FW6A 4MDTA 4MQYA 3UHMA 4J3DA 3P3CA 4U3BA 5DROA 5DRPA 3U1YA 3P3GA 3PS2A 4FW7A 1XXEA 3P3EA 3PS3A 3PS1A 1YH8A 4IS9A 5DRQA 4FW4A 4U3DA 3P76A 2GO3A 4ISAA 2J65A 5DRRA 4OZEA 4FW3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LCG A;  2VES A;  4FW5 A;  4LCH A;  1YHC A;  4OKG A;  2IER A;  2O3Z A;  2GO4 A;  4LCF A;  2IES A;  1P42 A;  2JT2 A;  3NZK A;  4FW6 A;  4MDT A;  4MQY A;  3UHM A;  4J3D A;  3P3C A;  4U3B A;  5DRO A;  5DRP A;  3U1Y A;  3P3G A;  3PS2 A;  4FW7 A;  1XXE A;  3P3E A;  3PS3 A;  3PS1 A;  1YH8 A;  4IS9 A;  5DRQ A;  4FW4 A;  4U3D A;  3P76 A;  2GO3 A;  4ISA A;  2J65 A;  5DRR A;  4OZE A;  4FW3 A; 
#chains in the Genus database with same CATH topology
 4XTJ A;  4DV5 I;  3Q6M A;  1FI4 A;  2O3Z A;  1HNZ I;  4HYM A;  2Q2E B;  4NXN E;  4JI1 E;  4AIM A;  2VQF I;  2UXD E;  1J5E I;  4LF8 I;  3T1Y I;  5K36 A;  2E1R A;  3LTO A;  2IOQ A;  4DPU A;  3HJC A;  2GS8 A;  1Z59 A;  1HNW E;  2BR2 A;  4GQU A;  4GKJ E;  4KQV A;  4DPX A;  1B62 A;  4JG4 A;  1Y4S A;  4FW3 A;  2WNR A;  4JI7 E;  2UXC E;  2JE6 A;  4DUZ E;  4B3R E;  1MG7 A;  4DR5 E;  1N32 I;  5L3J A;  1PIE A;  4NBQ A;  4X66 I;  4R1F A;  1USU A;  3WU6 A;  1Y6Z A;  4J3D A;  3P3C A;  1I94 I;  3PYE A;  2ZM6 I;  3P3G A;  5LMN I;  4LFC I;  2PO2 A;  4MU0 A;  4JI2 E;  3V2U C;  1N32 E;  3CDJ A;  4ISA A;  2Z5E A;  1MX0 A;  1N0U A;  1BKN A;  2BM1 A;  1I94 E;  4DR1 E;  4DR4 E;  1N34 I;  4DR7 I;  1IBK E;  3J7A M;  4K0K I;  4LFC E;  4IFD B;  5IWA E;  2C38 B;  4KHP E;  2IES A;  3QT6 A;  4MDT A;  3UHM A;  5LL6 R;  4DV1 E;  1XMQ E;  1XMO I;  5K36 F;  1H73 A;  3PYF A;  3WU5 A;  4DV0 I;  4M1K A;  4RPF A;  2NN6 D;  5A2Q C;  3LNU A;  4QNJ A;  2EFG A;  3P06 A;  4LF4 I;  1XMO E;  1Z0G A;  1MU5 A;  3ZM7 A;  2UUB E;  2UUA E;  3GCM A;  4B3M E;  3JAM C;  4LF6 I;  4IFD A;  2GO4 A;  1A6F A;  2C38 A;  3T1H E;  2VQE I;  1IBM I;  5K36 E;  3Q1Q A;  4ZVI A;  4U3B A;  2CGE A;  2HFU A;  3K1J A;  1ZM3 A;  3U1Y A;  4LF4 E;  3B78 A;  4JI4 I;  1FWK A;  1XXE A;  3PS3 A;  4IZK A;  1R6M A;  1N0V C;  4UTG A;  4LF7 I;  1U2R A;  4YHH I;  1N36 I;  2WW4 A;  4LF5 E;  2O1V A;  4DPT A;  2CZ9 A;  3ZKD A;  2PO1 B;  2XEX A;  4JI4 E;  4USK A;  4Z7Y A;  3H1C A;  3NZK A;  4FW6 A;  4YHH E;  1H72 C;  1PKP A;  3J81 C;  2E5L I;  1UEK A;  2GQ0 A;  5K36 C;  4YY3 E;  4DR3 E;  1FJG E;  5FLX Q;  1XNR I;  4JI6 I;  2UUC I;  4OO1 B;  5DNX A;  2NPF A;  3OTO I;  4DXL A;  4GKK E;  1Z0B A;  2E5L E;  4FW9 A;  4HAC B;  5JEA B;  3PYD A;  4P52 A;  1NHJ A;  4FWG A;  4LFB E;  4IFD F;  1KIJ A;  2DEJ A;  1OJ4 A;  2HK2 A;  2BA1 G;  1XNQ I;  4JYA E;  1RHY A;  2JEA B;  4JV5 E;  4DV6 E;  4JI8 I;  2O1U A;  2UXB I;  2WP8 B;  3PYG A;  2BA1 D;  1EA6 A;  2PNZ B;  4DV5 E;  2V34 A;  2PO0 B;  4OO1 A;  2IOP A;  3J81 Q;  1HNZ E;  4DV7 I;  3GLL A;  3QT7 A;  1OYS A;  4X65 I;  1XNQ E;  1Z0V A;  3M7N D;  1XHK A;  2VQF E;  4IFD E;  1J5E E;  3L7Z B;  4LF8 E;  3T1Y E;  4HAC A;  5JEA A;  1YHC A;  2HKE A;  4DR6 I;  1VIS A;  1H7U A;  2C37 B;  2UXB E;  4USM A;  2V2Q A;  4BA2 B;  4DV7 E;  2O1W A;  3M85 D;  4FW7 A;  2WP8 A;  4DR6 E;  4JI3 I;  2PNZ A;  4X66 E;  4WUD A;  3CWV A;  1UDN A;  4AQY I;  5EKW A;  3L7Z A;  1VI7 A;  2ZM6 E;  5LMN E;  1Y5Y A;  4IFD C;  1OYP A;  2ZBK B;  5BR8 I;  1S4E A;  4BA2 A;  1HR0 I;  4DV4 I;  2ZIT A;  2UU9 I;  3J80 Q;  4X64 I;  5C0X B;  1H7S A;  1UDO A;  4PRV A;  4AQY E;  4DV2 I;  3B8H A;  1N34 E;  4DR7 E;  4K0K E;  4OO1 F;  1N33 I;  3B82 A;  5ELW A;  2NN6 B;  4UT4 A;  4OZE A;  1OYR A;  4B3T I;  1HK7 A;  4FWD A;  1RR9 A;  5JEA F;  4FWH A;  5FLX C;  1PVG A;  3D4J A;  4LPF A;  4DR2 I;  4DV0 E;  1Y60 A;  1N33 E;  4MU1 A;  4HY1 A;  2CVE A;  5DRO A;  4MYU A;  4JI5 I;  3GME A;  2Z5C B;  3PS2 A;  4OX9 I;  5C0X A;  4OO1 E;  2JEB B;  4Z7C A;  2V8P A;  4LFA I;  4LF6 E;  5IT9 Q;  2VQE E;  4DUY I;  1IBM E;  5DRR A;  3ZZ0 A;  4BA1 B;  5JEA E;  4JI5 E;  4LCG A;  4NXM I;  4OX9 E;  4DU7 A;  1HNX I;  1NZ0 A;  4LFA E;  2PNM A;  2Z5B B;  1IBL I;  4LF7 E;  1N36 E;  1Z5C A;  1E3H A;  4DUY E;  1YH8 A;  3Q6N A;  4IS9 A;  5DRQ A;  2X7I A;  2JEB A;  3M6A A;  3P76 A;  4DU8 A;  2GO3 A;  4OO1 C;  1Z5A A;  4IZJ D;  2HHH I;  2PNL A;  2V2Z A;  2C39 B;  4JI0 I;  4BA1 A;  2J7K A;  5JEA C;  3WU4 A;  1Z0E A;  1XNR E;  2PO1 A;  5K36 D;  1FWL A;  1P42 A;  4JI6 E;  5EL9 A;  4DV3 I;  2UUC E;  2Z5B A;  1ZM9 A;  4HXZ A;  4OO1 D;  3OTO E;  5C0X F;  1ZM4 A;  2HKJ A;  3M7N G;  4NXN I;  4JI1 I;  1DAR A;  4U3D A;  2CG9 A;  3K17 A;  5LMU I;  2NN6 F;  2BA0 D;  1Z0T A;  2C39 A;  1QZR A;  4I3H A;  1HNW I;  5FWK A;  3WU3 A;  2O1T A;  4LCH A;  2BM0 A;  3J80 C;  1FKA E;  4GKJ I;  2IER A;  4JI8 E;  1KTV A;  3M85 G;  2JT2 A;  4JI7 I;  3CDI A;  2UXC I;  2AE8 A;  5C0X E;  1Y4U A;  4DUZ I;  4B3R I;  2PO2 B;  4DR5 I;  2JEA A;  5LMU E;  4X65 E;  1Z5B A;  3B4T A;  3PS1 A;  4X62 I;  3HUL A;  1Z0W A;  2NN6 E;  2PO0 A;  1UDS A;  4N3O A;  4P7A A;  1B63 A;  4JI2 I;  1UDQ A;  4FW5 A;  2F4V I;  2HK3 A;  4LOM A;  5GMD A;  4B3S I;  4EMD A;  2C37 A;  3J7A G;  4X62 E;  4DR1 I;  4DR4 I;  4JI3 E;  5GME A;  3DD6 A;  4PRX A;  1IBK I;  5IT9 C;  1H74 A;  5DRP A;  5IWA I;  5C0X C;  4KHP I;  2F4V E;  4FW4 A;  4DV1 I;  1XMQ I;  4B3S E;  2R3V A;  3ZZU A;  4FN5 A;  4MU3 A;  4IFD D;  2NN6 C;  5BR8 E;  5DNL A;  1HR0 E;  3PRY A;  2A2D A;  4DV4 E;  2UU9 E;  4X64 E;  1USV A;  4DV2 E;  3KRN A;  3ZZT A;  5C0X D;  4MQY A;  3QT8 A;  2UUB I;  2UUA I;  4URL A;  3V5R A;  4B3M I;  1KKH A;  4IZK B;  3P3E A;  4QNK A;  4B3T E;  3U1K A;  4DPW A;  3T1H I;  2A2C A;  4MU4 A;  1Z0C A;  1KVK A;  4DR2 E;  1ZXN A;  1S16 A;  3LPS A;  3QT5 A;  3H4L A;  4AID A;  4WUC A;  2NN6 A;  4AM3 A;  4LF9 I;  4LCF A;  1RRE A;  4LF5 I;  4PU9 A;  2LJP A;  1WUU A;  1ELO A;  2VF3 A;  2Z5C A;  1EI1 A;  4LF9 E;  2X36 A;  1D6T A;  4NXM E;  3ZKB A;  4YY3 I;  1HNX E;  4DR3 I;  3F0N A;  1FJG I;  2OI2 A;  3GON A;  4IZJ B;  1IBL E;  2AJ4 A;  2VES A;  1ZM2 A;  2HFS A;  4OKG A;  5A2Q Q;  3K85 A;  1E3P A;  1FNM A;  2F1D A;  4GKK I;  2DEI A;  2V2V A;  4DPY A;  5K36 B;  2HHH E;  3JAM Q;  4LFB I;  4WUB A;  1K47 A;  4MYT A;  2BV3 A;  4JI0 E;  2BR2 B;  1NHI A;  2BA0 G;  1R6L A;  2R42 A;  4JYA I;  2UXD I;  1ZXM A;  5JEA D;  4JV5 I;  4DV6 I;  2J65 A;  4ED4 A;  2WNR B;  4DV3 E;  3HKM A;  1NHH A;  2JE6 B;  4IZJ A; 
#chains in the Genus database with same CATH homology
 4LCG A;  2VES A;  4FW5 A;  4LCH A;  1YHC A;  4OKG A;  2IER A;  2O3Z A;  2GO4 A;  4LCF A;  2IES A;  1P42 A;  2JT2 A;  3NZK A;  4FW6 A;  4MDT A;  4MQY A;  3UHM A;  4J3D A;  3P3C A;  4U3B A;  5DRO A;  5DRP A;  3U1Y A;  3P3G A;  3PS2 A;  4FW7 A;  1XXE A;  3P3E A;  3PS3 A;  3PS1 A;  1YH8 A;  4IS9 A;  5DRQ A;  4FW4 A;  4U3D A;  3P76 A;  2GO3 A;  4ISA A;  2J65 A;  5DRR A;  4OZE A;  4FW3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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