1XXEA

Rdc refined solution structure of the aalpxc/tu-514 complex
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
268
structure length
268
Chain Sequence
LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFCFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Refined Solution Structure of the LpxC-TU-514 Complex and pK(a) Analysis of an Active Site Histidine: Insights into the Mechanism and Inhibitor Design
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 63
structure length 268
sequence length 268
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2004-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 1xxeA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 1xxeA02
2VESA 4FW4A 2GO3A 4FW3A 1P42A 2IESA 4U3BA 1YH8A 2IERA 4ISAA 3U1YA 2JT2A 4LCHA 4IS9A 3P76A 4LCGA 3PS3A 3P3EA 2J65A 3PS1A 1YHCA 4OZEA 5DRQA 4MQYA 3P3GA 2GO4A 4MDTA 4FW5A 4FW7A 4J3DA 1XXEA 4U3DA 2O3ZA 4FW6A 5DRPA 3NZKA 3UHMA 5DROA 4LCFA 3PS2A 4OKGA 3P3CA 5DRRA
chains in the Genus database with same CATH superfamily
1ZXNA 5JEAA 5FLXQ 5DNLA 3J80C 1Y4SA 1USUA 3J81Q 1OYPA 5BR8I 1E3PA 4B3RI 1Z0CA 3CWVA 4HYMA 4LF7I 4DPXA 1R6LA 3PS1A 1DARA 3P06A 3HULA 2HKJA 1KIJA 3ZZTA 2HHHI 2GS8A 4OX9I 1FJGE 4UT4A 5C0XB 5A2QC 4ED4A 4QNJA 4DU8A 4NXNI 4LFCI 4JG4A 2UU9E 4IFDF 4LF4I 4DV2E 4DV1E 1XMOI 5K36F 4ISAA 3H1CA 1OJ4A 2DEIA 4JI6I 1U2RA 1QZRA 4MU0A 2UUAE 4IFDD 2BA0G 3P3EA 1PVGA 4JI5E 3PYEA 4X64I 3M7NG 2E1RA 4FW5A 4FW7A 4BA2A 1FI4A 4DR5I 4DR3E 2R3VA 2JEBB 2HFUA 1Y60A 4LF5I 2XEXA 3LTOA 4JI7I 4WUDA 4LF8E 4IZJD 4OO1A 4DUZE 1EA6A 1P42A 2HFSA 4U3BA 1Z0EA 4JI0I 4I3HA 4DR6E 1FWKA 2PO1B 2LJPA 2E5LI 2O1TA 2DEJA 1MU5A 2BR2A 3PS3A 2BV3A 3PRYA 1J5EE 2C37A 4LOMA 4YY3I 4YHHE 2V8PA 4DV0I 3UHMA 3M85D 4DV3E 1BKNA 3ZM7A 4Z7CA 5JEAF 1KTVA 1NHHA 2JE6B 5DRRA 1B62A 1UDOA 2NPFA 3M6AA 1YH8A 5LMUI 4NXME 1K47A 1Z0GA 1XNQE 3DD6A 4HACB 4DPUA 2ZITA 3ZZ0A 1N34I 1UDQA 2O1VA 3L7ZA 2NN6F 5IT9Q 4JI8E 2PO2A 3K85A 4K0KE 4J3DA 2UUCE 4DPTA 2PO0B 1ZXMA 1UDSA 2PNZA 2Z5EA 3NZKA 4IZJA 1N33I 2NN6D 2HK3A 2Z5CA 4JI1E 3T1HE 1A6FA 1FWLA 2GO3A 2A2CA 1UEKA 4AIDA 5GMDA 5C0XC 4DV5E 1H73A 1N36E 2WP8B 5C0XE 1FJGI 3V2UC 1I94E 4FWHA 4AQYE 3HKMA 4GKKE 4OO1F 3GLLA 2UU9I 3JAMQ 4FWGA 4DV2I 1D6TA 4ZVIA 4DV1I 1OYRA 1Z59A 4FW3A 1XNRE 4OO1D 2UUAI 1KKHA 4P52A 4N3OA 4IZKB 4JI5I 4WUCA 3B4TA 5K36E 3V5RA 4DUYE 2J65A 3J7AG 3B78A 1ZM3A 4DR3I 5LL6R 3P3GA 1HK7A 3CDIA 2UXDE 4LF9E 1XXEA 1NZ0A 1Z5BA 4MU1A 4LF8I 2NN6A 2BR2B 2C39B 1HNWE 1XMQE 4B3SE 4XTJA 4DUZI 3PS2A 5FLXC 4DR6I 1E3HA 1Y6ZA 1Z0BA 3U1YA 3J81C 3WU4A 1H7SA 3P76A 1J5EI 4YHHI 2Z5BA 1ZM4A 4IFDB 1N0VC 2JEAB 5EL9A 1UDNA 2C38B 4DV3I 5K36B 4X62E 4MU3A 2X36A 1S16A 3WU5A 4PU9A 4B3ME 3P3CA 4NXMI 3ZKDA 2IOPA 1XNQI 2ZBKB 2IESA 1KVKA 5JEAE 2VF3A 2X7IA 1EI1A 1PIEA 2IOQA 4IZJB 4DR2E 1HNZE 2VQEE 2Z5CB 4MU4A 4JI8I 2J7KA 4K0KI 2WNRA 2UUCI 4MDTA 5LMNE 4DR4E 1Z5AA 1ZM2A 4AM3A 4FW6A 2BM0A 2BA1G 1H7UA 4JI1I 3T1HI 4DU7A 4DR7E 2O1WA 4Z7YA 4B3TE 4LFCE 4X66E 4FN5A 4KHPE 1VI7A 4DV5I 1B63A 1N36I 4LCHA 1N32E 2V2ZA 4JI3E 4RPFA 4EMDA 1I94I 2CZ9A 3B82A 4LCGA 4OZEA 5JEAB 3WU3A 2HKEA 4AQYI 1HR0E 1FNMA 4GKKI 1R6MA 3KRNA 1NHJA 1HNXE 4PRXA 4GKJE 3HJCA 1XNRI 1OYSA 4OO1E 4FW9A 2NN6B 4X65E 3PYFA 2JEBA 3PYGA 2UUBE 4DUYI 3GCMA 2UXCE 3CDJA 3QT7A 1IBKE 4USMA 2UXDI 4LF9I 5IT9C 2ZM6E 2GQ0A 4DV6E 5FWKA 1HNWI 1XMQI 4DR1E 4B3SI 1ELOA 2PO1A 3OTOE 1MG7A 1Z0WA 2Z5BB 1VISA 2VQFE 2VESA 2WW4A 4BA2B 1H74A 4LFBE 4JI4E 3J80Q 4IFDC 1IBME 4WUBA 5K36C 1NHIA 3J7AM 4LFAE 4IFDE 4OO1B 4PRVA 5DRQA 1WUUA 4HY1A 4X62I 2F4VE 2R42A 5A2QQ 3QT6A 1FKAE 4B3MI 4HACA 4LF6E 4LCFA 3K17A 3JAMC 1PKPA 2C37B 4JI2E 4DPWA 5C0XF 3WU6A 4DR2I 1HNZI 2VQEI 4NBQA 1IBLE 2AE8A 4AIMA 2PO0A 4DV7E 5IWAE 3T1YE 5L3JA 5C0XD 4DV4E 2O1UA 5LMNI 4DR4I 1Y5YA 2BM1A 3LNUA 3B8HA 4JYAE 4URLA 3M85G 1RR9A 2UXBE 5DRPA 1Z0TA 4DR7I 1N0UA 3QT5A 4B3TI 2WP8A 1Y4UA 4X66I 4KHPI 3ZKBA 3L7ZB 3K1JA 5JEAC 4JV5E 2PO2B 1N32I 4QNKA 4JI3I 2PNZB 3GMEA 3ZZUA 5BR8E 5K36D 4B3RE 1YHCA 1H72C 2V2VA 4BA1A 1USVA 1HR0I 4MQYA 4LF7E 4UTGA 2PNMA 4U3DA 2NN6C 2HHHE 4OX9E 4DXLA 1HNXI 3U1KA 2NN6E 4IZKA 4GKJI 2Q2EB 1Z0VA 4NXNE 4FW4A 5GMEA 4GQUA 4X65I 4MYUA 1RHYA 1RREA 2V2QA 2UUBI 2IERA 3GONA 4LF4E 2UXCI 5C0XA 1XMOE 1IBKI 4IS9A 4JI6E 2C39A 4P7AA 2EFGA 2ZM6I 4DV6I 4MYTA 2BA0D 2OI2A 4DR1I 3M7ND 4X64E 3OTOI 4FWDA 4HXZA 4DR5E 3QT8A 1MX0A 1S4EA 2VQFI 4R1FA 2CGEA 4LFBI 4JI4I 4LF5E 4OO1C 4JI7E 3D4JA 1IBMI 5ELWA 5JEAD 5DNXA 3H4LA 4IFDA 2JEAA 1ZM9A 4LFAI 2C38A 4JI0E 5K36A 3Q1QA 2E5LE 2F4VI 4LF6I 3LPSA 4YY3E 2F1DA 3Q6NA 5DROA 2BA1D 4M1KA 5EKWA 4DV0E 4JI2I 1XHKA 1IBLI 2CG9A 4DV7I 5IWAI 3F0NA 2JT2A 3T1YI 5LMUE 4KQVA 4DV4I 4LPFA 2PNLA 2HK2A 4DPYA 2GO4A 4JYAI 2JE6A 1N34E 2UXBI 2V34A 2O3ZA 2AJ4A 4USKA 4BA1B 1Z5CA 2CVEA 4JV5I 2A2DA 3PYDA 1N33E 4OKGA 3Q6MA 2WNRB
chains in the Genus database with same CATH topology
2VESA 4FW4A 2GO3A 4FW3A 1P42A 2IESA 4U3BA 1YH8A 2IERA 4ISAA 3U1YA 2JT2A 4LCHA 4IS9A 3P76A 4LCGA 3PS3A 3P3EA 2J65A 3PS1A 1YHCA 4OZEA 5DRQA 4MQYA 3P3GA 2GO4A 4MDTA 4FW5A 4FW7A 4J3DA 1XXEA 4U3DA 2O3ZA 4FW6A 5DRPA 3NZKA 3UHMA 5DROA 4LCFA 3PS2A 4OKGA 3P3CA 5DRRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VES A;  4FW4 A;  2GO3 A;  4FW3 A;  1P42 A;  2IES A;  4U3B A;  1YH8 A;  2IER A;  4ISA A;  3U1Y A;  2JT2 A;  4LCH A;  4IS9 A;  3P76 A;  4LCG A;  3PS3 A;  3P3E A;  2J65 A;  3PS1 A;  1YHC A;  4OZE A;  5DRQ A;  4MQY A;  3P3G A;  2GO4 A;  4MDT A;  4FW5 A;  4FW7 A;  4J3D A;  1XXE A;  4U3D A;  2O3Z A;  4FW6 A;  5DRP A;  3NZK A;  3UHM A;  5DRO A;  4LCF A;  3PS2 A;  4OKG A;  3P3C A;  5DRR A; 
#chains in the Genus database with same CATH topology
 1ZXN A;  5JEA A;  5FLX Q;  5DNL A;  3J80 C;  1Y4S A;  1USU A;  3J81 Q;  1OYP A;  5BR8 I;  1E3P A;  4B3R I;  1Z0C A;  3CWV A;  4HYM A;  4LF7 I;  4DPX A;  1R6L A;  3PS1 A;  1DAR A;  3P06 A;  3HUL A;  2HKJ A;  1KIJ A;  3ZZT A;  2HHH I;  2GS8 A;  4OX9 I;  1FJG E;  4UT4 A;  5C0X B;  5A2Q C;  4ED4 A;  4QNJ A;  4DU8 A;  4NXN I;  4LFC I;  4JG4 A;  2UU9 E;  4IFD F;  4LF4 I;  4DV2 E;  4DV1 E;  1XMO I;  5K36 F;  4ISA A;  3H1C A;  1OJ4 A;  2DEI A;  4JI6 I;  1U2R A;  1QZR A;  4MU0 A;  2UUA E;  4IFD D;  2BA0 G;  3P3E A;  1PVG A;  4JI5 E;  3PYE A;  4X64 I;  3M7N G;  2E1R A;  4FW5 A;  4FW7 A;  4BA2 A;  1FI4 A;  4DR5 I;  4DR3 E;  2R3V A;  2JEB B;  2HFU A;  1Y60 A;  4LF5 I;  2XEX A;  3LTO A;  4JI7 I;  4WUD A;  4LF8 E;  4IZJ D;  4OO1 A;  4DUZ E;  1EA6 A;  1P42 A;  2HFS A;  4U3B A;  1Z0E A;  4JI0 I;  4I3H A;  4DR6 E;  1FWK A;  2PO1 B;  2LJP A;  2E5L I;  2O1T A;  2DEJ A;  1MU5 A;  2BR2 A;  3PS3 A;  2BV3 A;  3PRY A;  1J5E E;  2C37 A;  4LOM A;  4YY3 I;  4YHH E;  2V8P A;  4DV0 I;  3UHM A;  3M85 D;  4DV3 E;  1BKN A;  3ZM7 A;  4Z7C A;  5JEA F;  1KTV A;  1NHH A;  2JE6 B;  5DRR A;  1B62 A;  1UDO A;  2NPF A;  3M6A A;  1YH8 A;  5LMU I;  4NXM E;  1K47 A;  1Z0G A;  1XNQ E;  3DD6 A;  4HAC B;  4DPU A;  2ZIT A;  3ZZ0 A;  1N34 I;  1UDQ A;  2O1V A;  3L7Z A;  2NN6 F;  5IT9 Q;  4JI8 E;  2PO2 A;  3K85 A;  4K0K E;  4J3D A;  2UUC E;  4DPT A;  2PO0 B;  1ZXM A;  1UDS A;  2PNZ A;  2Z5E A;  3NZK A;  4IZJ A;  1N33 I;  2NN6 D;  2HK3 A;  2Z5C A;  4JI1 E;  3T1H E;  1A6F A;  1FWL A;  2GO3 A;  2A2C A;  1UEK A;  4AID A;  5GMD A;  5C0X C;  4DV5 E;  1H73 A;  1N36 E;  2WP8 B;  5C0X E;  1FJG I;  3V2U C;  1I94 E;  4FWH A;  4AQY E;  3HKM A;  4GKK E;  4OO1 F;  3GLL A;  2UU9 I;  3JAM Q;  4FWG A;  4DV2 I;  1D6T A;  4ZVI A;  4DV1 I;  1OYR A;  1Z59 A;  4FW3 A;  1XNR E;  4OO1 D;  2UUA I;  1KKH A;  4P52 A;  4N3O A;  4IZK B;  4JI5 I;  4WUC A;  3B4T A;  5K36 E;  3V5R A;  4DUY E;  2J65 A;  3J7A G;  3B78 A;  1ZM3 A;  4DR3 I;  5LL6 R;  3P3G A;  1HK7 A;  3CDI A;  2UXD E;  4LF9 E;  1XXE A;  1NZ0 A;  1Z5B A;  4MU1 A;  4LF8 I;  2NN6 A;  2BR2 B;  2C39 B;  1HNW E;  1XMQ E;  4B3S E;  4XTJ A;  4DUZ I;  3PS2 A;  5FLX C;  4DR6 I;  1E3H A;  1Y6Z A;  1Z0B A;  3U1Y A;  3J81 C;  3WU4 A;  1H7S A;  3P76 A;  1J5E I;  4YHH I;  2Z5B A;  1ZM4 A;  4IFD B;  1N0V C;  2JEA B;  5EL9 A;  1UDN A;  2C38 B;  4DV3 I;  5K36 B;  4X62 E;  4MU3 A;  2X36 A;  1S16 A;  3WU5 A;  4PU9 A;  4B3M E;  3P3C A;  4NXM I;  3ZKD A;  2IOP A;  1XNQ I;  2ZBK B;  2IES A;  1KVK A;  5JEA E;  2VF3 A;  2X7I A;  1EI1 A;  1PIE A;  2IOQ A;  4IZJ B;  4DR2 E;  1HNZ E;  2VQE E;  2Z5C B;  4MU4 A;  4JI8 I;  2J7K A;  4K0K I;  2WNR A;  2UUC I;  4MDT A;  5LMN E;  4DR4 E;  1Z5A A;  1ZM2 A;  4AM3 A;  4FW6 A;  2BM0 A;  2BA1 G;  1H7U A;  4JI1 I;  3T1H I;  4DU7 A;  4DR7 E;  2O1W A;  4Z7Y A;  4B3T E;  4LFC E;  4X66 E;  4FN5 A;  4KHP E;  1VI7 A;  4DV5 I;  1B63 A;  1N36 I;  4LCH A;  1N32 E;  2V2Z A;  4JI3 E;  4RPF A;  4EMD A;  1I94 I;  2CZ9 A;  3B82 A;  4LCG A;  4OZE A;  5JEA B;  3WU3 A;  2HKE A;  4AQY I;  1HR0 E;  1FNM A;  4GKK I;  1R6M A;  3KRN A;  1NHJ A;  1HNX E;  4PRX A;  4GKJ E;  3HJC A;  1XNR I;  1OYS A;  4OO1 E;  4FW9 A;  2NN6 B;  4X65 E;  3PYF A;  2JEB A;  3PYG A;  2UUB E;  4DUY I;  3GCM A;  2UXC E;  3CDJ A;  3QT7 A;  1IBK E;  4USM A;  2UXD I;  4LF9 I;  5IT9 C;  2ZM6 E;  2GQ0 A;  4DV6 E;  5FWK A;  1HNW I;  1XMQ I;  4DR1 E;  4B3S I;  1ELO A;  2PO1 A;  3OTO E;  1MG7 A;  1Z0W A;  2Z5B B;  1VIS A;  2VQF E;  2VES A;  2WW4 A;  4BA2 B;  1H74 A;  4LFB E;  4JI4 E;  3J80 Q;  4IFD C;  1IBM E;  4WUB A;  5K36 C;  1NHI A;  3J7A M;  4LFA E;  4IFD E;  4OO1 B;  4PRV A;  5DRQ A;  1WUU A;  4HY1 A;  4X62 I;  2F4V E;  2R42 A;  5A2Q Q;  3QT6 A;  1FKA E;  4B3M I;  4HAC A;  4LF6 E;  4LCF A;  3K17 A;  3JAM C;  1PKP A;  2C37 B;  4JI2 E;  4DPW A;  5C0X F;  3WU6 A;  4DR2 I;  1HNZ I;  2VQE I;  4NBQ A;  1IBL E;  2AE8 A;  4AIM A;  2PO0 A;  4DV7 E;  5IWA E;  3T1Y E;  5L3J A;  5C0X D;  4DV4 E;  2O1U A;  5LMN I;  4DR4 I;  1Y5Y A;  2BM1 A;  3LNU A;  3B8H A;  4JYA E;  4URL A;  3M85 G;  1RR9 A;  2UXB E;  5DRP A;  1Z0T A;  4DR7 I;  1N0U A;  3QT5 A;  4B3T I;  2WP8 A;  1Y4U A;  4X66 I;  4KHP I;  3ZKB A;  3L7Z B;  3K1J A;  5JEA C;  4JV5 E;  2PO2 B;  1N32 I;  4QNK A;  4JI3 I;  2PNZ B;  3GME A;  3ZZU A;  5BR8 E;  5K36 D;  4B3R E;  1YHC A;  1H72 C;  2V2V A;  4BA1 A;  1USV A;  1HR0 I;  4MQY A;  4LF7 E;  4UTG A;  2PNM A;  4U3D A;  2NN6 C;  2HHH E;  4OX9 E;  4DXL A;  1HNX I;  3U1K A;  2NN6 E;  4IZK A;  4GKJ I;  2Q2E B;  1Z0V A;  4NXN E;  4FW4 A;  5GME A;  4GQU A;  4X65 I;  4MYU A;  1RHY A;  1RRE A;  2V2Q A;  2UUB I;  2IER A;  3GON A;  4LF4 E;  2UXC I;  5C0X A;  1XMO E;  1IBK I;  4IS9 A;  4JI6 E;  2C39 A;  4P7A A;  2EFG A;  2ZM6 I;  4DV6 I;  4MYT A;  2BA0 D;  2OI2 A;  4DR1 I;  3M7N D;  4X64 E;  3OTO I;  4FWD A;  4HXZ A;  4DR5 E;  3QT8 A;  1MX0 A;  1S4E A;  2VQF I;  4R1F A;  2CGE A;  4LFB I;  4JI4 I;  4LF5 E;  4OO1 C;  4JI7 E;  3D4J A;  1IBM I;  5ELW A;  5JEA D;  5DNX A;  3H4L A;  4IFD A;  2JEA A;  1ZM9 A;  4LFA I;  2C38 A;  4JI0 E;  5K36 A;  3Q1Q A;  2E5L E;  2F4V I;  4LF6 I;  3LPS A;  4YY3 E;  2F1D A;  3Q6N A;  5DRO A;  2BA1 D;  4M1K A;  5EKW A;  4DV0 E;  4JI2 I;  1XHK A;  1IBL I;  2CG9 A;  4DV7 I;  5IWA I;  3F0N A;  2JT2 A;  3T1Y I;  5LMU E;  4KQV A;  4DV4 I;  4LPF A;  2PNL A;  2HK2 A;  4DPY A;  2GO4 A;  4JYA I;  2JE6 A;  1N34 E;  2UXB I;  2V34 A;  2O3Z A;  2AJ4 A;  4USK A;  4BA1 B;  1Z5C A;  2CVE A;  4JV5 I;  2A2D A;  3PYD A;  1N33 E;  4OKG A;  3Q6M A;  2WNR B; 
#chains in the Genus database with same CATH homology
 2VES A;  4FW4 A;  2GO3 A;  4FW3 A;  1P42 A;  2IES A;  4U3B A;  1YH8 A;  2IER A;  4ISA A;  3U1Y A;  2JT2 A;  4LCH A;  4IS9 A;  3P76 A;  4LCG A;  3PS3 A;  3P3E A;  2J65 A;  3PS1 A;  1YHC A;  4OZE A;  5DRQ A;  4MQY A;  3P3G A;  2GO4 A;  4MDT A;  4FW5 A;  4FW7 A;  4J3D A;  1XXE A;  4U3D A;  2O3Z A;  4FW6 A;  5DRP A;  3NZK A;  3UHM A;  5DRO A;  4LCF A;  3PS2 A;  4OKG A;  3P3C A;  5DRR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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