4QNJA

The structure of wt a. thaliana igpd2 in complex with mn2+ and formate at 1.3a resolution
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
184
structure length
184
Chain Sequence
b'ARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 61
structure length 184
sequence length 184
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2014-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4qnjA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4qnjA02
2F1DA 5DNLA 4QNJA 4LPFA 5EL9A 2AE8A 4MU0A 4MU3A 4MU4A 4MU1A 1RHYA 4QNKA 5ELWA 5DNXA 4LOMA 4GQUA 5EKWA
chains in the Genus database with same CATH superfamily
3T1YI 2E1RA 3PS2A 1USUA 4AQYE 3V2UC 4DPWA 2UUCE 2WNRB 4LF7I 2CVEA 4YHHE 1P42A 3K17A 4IFDF 3D4JA 2BR2A 4DR7E 2IESA 4MU3A 2Z5BB 5BR8E 4LF4I 4URLA 1Z0VA 2O1TA 2EFGA 3NZKA 4DPXA 1KVKA 2UXCI 4LF5E 4X64E 4AM3A 3J7AM 4OO1B 2NN6F 4X65I 4DR1I 1Z0GA 4DV3E 1Z59A 2JEAB 1FJGI 1HR0E 3WU4A 4LPFA 1Z0EA 5IT9C 3Q1QA 4LCFA 1MU5A 4DR5E 4DR2E 4JI5I 4IFDE 3LPSA 1EI1A 4DV6I 4OX9I 2PNLA 4JV5I 4FW4A 3ZM7A 3J81Q 1RR9A 2Z5CA 4LFCI 5IWAI 1MG7A 1DARA 2V2VA 3K85A 2HHHI 4MU4A 3QT7A 2NN6E 5C0XB 1UEKA 4FWDA 4LF4E 1I94I 3B78A 5L3JA 3WU5A 2UXCE 1Z0CA 4NXNE 1XMQE 4UTGA 4LF6I 1Z5AA 3H4LA 1XNRE 4DV1I 3HKMA 4OO1F 1NHHA 1KKHA 2PO2B 5FLXC 1FJGE 4HACB 3OTOE 4HY1A 1ZM9A 2WW4A 4LF8E 4DR4I 2O1WA 4XTJA 1HNXE 1A6FA 2V2QA 1J5EI 2UUAE 4FWHA 2BV3A 3H1CA 4MDTA 1WUUA 3J80Q 5DROA 2PNZA 4R1FA 1KIJA 3GONA 5K36B 1RREA 2PO0B 3WU6A 4Z7CA 4AIMA 5JEAB 5IWAE 1N32E 1NHIA 4JI7I 1ZXMA 3F0NA 4GKKE 4I3HA 1S4EA 4OO1E 5C0XF 1HNWI 3K1JA 3WU3A 1H73A 1Y4SA 2DEIA 2E5LI 3QT8A 4LF6E 4FW9A 2UUBI 4B3MI 5LMUE 1FNMA 3PS1A 4WUDA 2F4VI 4DV7E 3M7ND 2R42A 4KHPE 4JG4A 3QT5A 4BA2A 4P7AA 4WUCA 2NPFA 2PO1A 2UXBI 2ZM6I 5C0XE 1QZRA 4JI2E 1N36I 1HNZI 3PYFA 5K36F 2GS8A 4JI0E 3M6AA 4FW5A 5JEAF 1Y60A 1XXEA 4DV4I 3M7NG 4JYAI 2IERA 3P3GA 3CWVA 1ZM3A 4LCHA 4B3RI 4DPUA 2R3VA 1IBMI 2UUBE 1D6TA 2C37B 4JI3E 4LFAI 4FW3A 3ZKDA 2F1DA 2X36A 4BA1A 1PIEA 1YH8A 2C39A 1N34E 1IBLI 1XMOI 3J7AG 2GQ0A 2F4VE 5DRRA 2GO4A 2VQFI 4DUYE 4K0KI 1RHYA 3P3EA 4P52A 5K36E 4JI1E 3LTOA 4DR3I 2VQEE 3P76A 2HK3A 2UXBE 5JEAE 4DV5I 2BA0G 4MYUA 2X7IA 4DV0I 3T1YE 1ZXNA 1N36E 4PU9A 1UDQA 2UXDI 1R6LA 4LF7E 4FW7A 4UT4A 2Q2EB 2PO2A 4MYTA 1Z0WA 4LCGA 3GMEA 2BR2B 4JYAE 4ISAA 2A2DA 1UDNA 4IFDC 3ZZ0A 3U1YA 4MU1A 4DPTA 3JAMQ 2OI2A 3UHMA 1IBME 4X62I 4B3SI 4FWGA 1N33I 4X65E 2UU9I 1NZ0A 1H7SA 2C38A 4DR1E 2PO0A 1B62A 3U1KA 4Z7YA 3DD6A 2BA1G 5GMEA 4IFDA 2NN6C 4YY3I 4PRXA 4IZJA 4U3BA 1ELOA 1ZM2A 4WUBA 2LJPA 3T1HI 4JI5E 1OJ4A 4DV6E 4OX9E 4OZEA 2J7KA 4JV5E 2NN6A 4IFDD 1UDOA 4DPYA 4IZJD 1Y6ZA 1IBKI 4LFCE 4GKJI 2V2ZA 4IZKA 4M1KA 1Z5BA 1N0UA 2HHHE 4NBQA 2HFUA 3P06A 2HFSA 5LMNI 1XNQI 2AJ4A 4B3TI 1I94E 2NN6D 4JI6I 4X66I 4LFBI 5DRQA 4NXMI 1N33E 2WP8A 2Z5EA 3ZZTA 4DV1E 1E3HA 1U2RA 2JE6B 2XEXA 3CDIA 3KRNA 2BM0A 4AQYI 1OYRA 3GCMA 3L7ZB 4FN5A 4YY3E 2UUCI 2WNRA 4MQYA 1UDSA 4YHHI 4OKGA 4OO1C 1Y5YA 4GQUA 1HK7A 1R6MA 3CDJA 4DR4E 2HKEA 2PNMA 1J5EE 4DR7I 2Z5BA 3J80C 1PKPA 1E3PA 5BR8I 2PNZB 4LF5I 4X64I 1IBKE 2DEJA 4OO1A 5DNLA 4JI8I 2J65A 2AE8A 5GMDA 2CZ9A 4JI7E 4DV3I 5FWKA 1VISA 3HJCA 2JEAA 1XNQE 1HR0I 2A2CA 4HXZA 1HNWE 5IT9Q 4DR5I 4DR2I 2O1VA 2BA0D 2E5LE 4NXME 4DUZI 4OO1D 5C0XC 1USVA 1K47A 4B3ME 3PYDA 1B63A 3Q6NA 4USMA 2IOPA 3B82A 2JEBB 3B8HA 2ZITA 2V8PA 4MU0A 1PVGA 5C0XA 5A2QC 4PRVA 4BA2B 3PRYA 1S16A 1OYSA 1YHCA 4LOMA 1Y4UA 4EMDA 1Z0BA 2PO1B 2ZM6E 4N3OA 4RPFA 4NXNI 1XMQI 4USKA 1HNZE 4JI8E 1VI7A 1XNRI 2BA1D 5C0XD 1FWLA 1XHKA 4HACA 3HULA 3OTOI 5K36C 5FLXQ 1BKNA 4DV4E 3PS3A 2JT2A 3GLLA 5JEAC 4LF8I 1FI4A 4QNKA 4B3RE 2BM1A 1HNXI 4DUZE 3LNUA 2UUAI 4ZVIA 2ZBKB 2VF3A 4LF9I 4LFAE 1H7UA 4BA1B 2GO3A 2C39B 3B4TA 4AIDA 5K36A 3PYGA 1IBLE 1XMOE 2HKJA 4DU8A 5JEAA 1N32I 5EL9A 3M85D 2VQFE 4K0KE 1MX0A 2CGEA 4DR3E 4GKKI 4DV5E 5K36D 5ELWA 4KQVA 3J81C 4DV0E 5LL6R 4J3DA 5JEAD 4DR6I 2O1UA 2UXDE 1OYPA 2Z5CB 2JE6A 5LMUI 1Z0TA 3L7ZA 3Q6MA 4JI4I 3M85G 1Z5CA 2V34A 3JAMC 4IS9A 2HK2A 1NHJA 2VESA 4DV7I 4DV2I 4KHPI 4X62E 4B3SE 4LF9E 3ZZUA 2UU9E 2C38B 4U3DA 3PYEA 4JI2I 1FWKA 2IOQA 4IFDB 4JI0I 4IZJB 5EKWA 1EA6A 2O3ZA 1FKAE 4HYMA 1KTVA 3P3CA 3T1HE 5DRPA 3ZKBA 4DU7A 2CG9A 3V5RA 2NN6B 4DR6E 2C37A 4JI3I 3QT6A 4GKJE 4IZKB 1H74A 1N34I 1H72C 2JEBA 4JI4E 1ZM4A 5LMNE 4ED4A 4DUYI 4B3TE 1N0VC 4FW6A 4DV2E 4DXLA 4QNJA 4JI6E 4X66E 4JI1I 4LFBE 5A2QQ 2VQEI 5DNXA 2WP8B
chains in the Genus database with same CATH topology
2F1DA 5DNLA 4QNJA 4LPFA 5EL9A 2AE8A 4MU0A 4MU3A 4MU4A 4MU1A 1RHYA 4QNKA 5ELWA 5DNXA 4LOMA 4GQUA 5EKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1D A;  5DNL A;  4QNJ A;  4LPF A;  5EL9 A;  2AE8 A;  4MU0 A;  4MU3 A;  4MU4 A;  4MU1 A;  1RHY A;  4QNK A;  5ELW A;  5DNX A;  4LOM A;  4GQU A;  5EKW A; 
#chains in the Genus database with same CATH topology
 3T1Y I;  2E1R A;  3PS2 A;  1USU A;  4AQY E;  3V2U C;  4DPW A;  2UUC E;  2WNR B;  4LF7 I;  2CVE A;  4YHH E;  1P42 A;  3K17 A;  4IFD F;  3D4J A;  2BR2 A;  4DR7 E;  2IES A;  4MU3 A;  2Z5B B;  5BR8 E;  4LF4 I;  4URL A;  1Z0V A;  2O1T A;  2EFG A;  3NZK A;  4DPX A;  1KVK A;  2UXC I;  4LF5 E;  4X64 E;  4AM3 A;  3J7A M;  4OO1 B;  2NN6 F;  4X65 I;  4DR1 I;  1Z0G A;  4DV3 E;  1Z59 A;  2JEA B;  1FJG I;  1HR0 E;  3WU4 A;  4LPF A;  1Z0E A;  5IT9 C;  3Q1Q A;  4LCF A;  1MU5 A;  4DR5 E;  4DR2 E;  4JI5 I;  4IFD E;  3LPS A;  1EI1 A;  4DV6 I;  4OX9 I;  2PNL A;  4JV5 I;  4FW4 A;  3ZM7 A;  3J81 Q;  1RR9 A;  2Z5C A;  4LFC I;  5IWA I;  1MG7 A;  1DAR A;  2V2V A;  3K85 A;  2HHH I;  4MU4 A;  3QT7 A;  2NN6 E;  5C0X B;  1UEK A;  4FWD A;  4LF4 E;  1I94 I;  3B78 A;  5L3J A;  3WU5 A;  2UXC E;  1Z0C A;  4NXN E;  1XMQ E;  4UTG A;  4LF6 I;  1Z5A A;  3H4L A;  1XNR E;  4DV1 I;  3HKM A;  4OO1 F;  1NHH A;  1KKH A;  2PO2 B;  5FLX C;  1FJG E;  4HAC B;  3OTO E;  4HY1 A;  1ZM9 A;  2WW4 A;  4LF8 E;  4DR4 I;  2O1W A;  4XTJ A;  1HNX E;  1A6F A;  2V2Q A;  1J5E I;  2UUA E;  4FWH A;  2BV3 A;  3H1C A;  4MDT A;  1WUU A;  3J80 Q;  5DRO A;  2PNZ A;  4R1F A;  1KIJ A;  3GON A;  5K36 B;  1RRE A;  2PO0 B;  3WU6 A;  4Z7C A;  4AIM A;  5JEA B;  5IWA E;  1N32 E;  1NHI A;  4JI7 I;  1ZXM A;  3F0N A;  4GKK E;  4I3H A;  1S4E A;  4OO1 E;  5C0X F;  1HNW I;  3K1J A;  3WU3 A;  1H73 A;  1Y4S A;  2DEI A;  2E5L I;  3QT8 A;  4LF6 E;  4FW9 A;  2UUB I;  4B3M I;  5LMU E;  1FNM A;  3PS1 A;  4WUD A;  2F4V I;  4DV7 E;  3M7N D;  2R42 A;  4KHP E;  4JG4 A;  3QT5 A;  4BA2 A;  4P7A A;  4WUC A;  2NPF A;  2PO1 A;  2UXB I;  2ZM6 I;  5C0X E;  1QZR A;  4JI2 E;  1N36 I;  1HNZ I;  3PYF A;  5K36 F;  2GS8 A;  4JI0 E;  3M6A A;  4FW5 A;  5JEA F;  1Y60 A;  1XXE A;  4DV4 I;  3M7N G;  4JYA I;  2IER A;  3P3G A;  3CWV A;  1ZM3 A;  4LCH A;  4B3R I;  4DPU A;  2R3V A;  1IBM I;  2UUB E;  1D6T A;  2C37 B;  4JI3 E;  4LFA I;  4FW3 A;  3ZKD A;  2F1D A;  2X36 A;  4BA1 A;  1PIE A;  1YH8 A;  2C39 A;  1N34 E;  1IBL I;  1XMO I;  3J7A G;  2GQ0 A;  2F4V E;  5DRR A;  2GO4 A;  2VQF I;  4DUY E;  4K0K I;  1RHY A;  3P3E A;  4P52 A;  5K36 E;  4JI1 E;  3LTO A;  4DR3 I;  2VQE E;  3P76 A;  2HK3 A;  2UXB E;  5JEA E;  4DV5 I;  2BA0 G;  4MYU A;  2X7I A;  4DV0 I;  3T1Y E;  1ZXN A;  1N36 E;  4PU9 A;  1UDQ A;  2UXD I;  1R6L A;  4LF7 E;  4FW7 A;  4UT4 A;  2Q2E B;  2PO2 A;  4MYT A;  1Z0W A;  4LCG A;  3GME A;  2BR2 B;  4JYA E;  4ISA A;  2A2D A;  1UDN A;  4IFD C;  3ZZ0 A;  3U1Y A;  4MU1 A;  4DPT A;  3JAM Q;  2OI2 A;  3UHM A;  1IBM E;  4X62 I;  4B3S I;  4FWG A;  1N33 I;  4X65 E;  2UU9 I;  1NZ0 A;  1H7S A;  2C38 A;  4DR1 E;  2PO0 A;  1B62 A;  3U1K A;  4Z7Y A;  3DD6 A;  2BA1 G;  5GME A;  4IFD A;  2NN6 C;  4YY3 I;  4PRX A;  4IZJ A;  4U3B A;  1ELO A;  1ZM2 A;  4WUB A;  2LJP A;  3T1H I;  4JI5 E;  1OJ4 A;  4DV6 E;  4OX9 E;  4OZE A;  2J7K A;  4JV5 E;  2NN6 A;  4IFD D;  1UDO A;  4DPY A;  4IZJ D;  1Y6Z A;  1IBK I;  4LFC E;  4GKJ I;  2V2Z A;  4IZK A;  4M1K A;  1Z5B A;  1N0U A;  2HHH E;  4NBQ A;  2HFU A;  3P06 A;  2HFS A;  5LMN I;  1XNQ I;  2AJ4 A;  4B3T I;  1I94 E;  2NN6 D;  4JI6 I;  4X66 I;  4LFB I;  5DRQ A;  4NXM I;  1N33 E;  2WP8 A;  2Z5E A;  3ZZT A;  4DV1 E;  1E3H A;  1U2R A;  2JE6 B;  2XEX A;  3CDI A;  3KRN A;  2BM0 A;  4AQY I;  1OYR A;  3GCM A;  3L7Z B;  4FN5 A;  4YY3 E;  2UUC I;  2WNR A;  4MQY A;  1UDS A;  4YHH I;  4OKG A;  4OO1 C;  1Y5Y A;  4GQU A;  1HK7 A;  1R6M A;  3CDJ A;  4DR4 E;  2HKE A;  2PNM A;  1J5E E;  4DR7 I;  2Z5B A;  3J80 C;  1PKP A;  1E3P A;  5BR8 I;  2PNZ B;  4LF5 I;  4X64 I;  1IBK E;  2DEJ A;  4OO1 A;  5DNL A;  4JI8 I;  2J65 A;  2AE8 A;  5GMD A;  2CZ9 A;  4JI7 E;  4DV3 I;  5FWK A;  1VIS A;  3HJC A;  2JEA A;  1XNQ E;  1HR0 I;  2A2C A;  4HXZ A;  1HNW E;  5IT9 Q;  4DR5 I;  4DR2 I;  2O1V A;  2BA0 D;  2E5L E;  4NXM E;  4DUZ I;  4OO1 D;  5C0X C;  1USV A;  1K47 A;  4B3M E;  3PYD A;  1B63 A;  3Q6N A;  4USM A;  2IOP A;  3B82 A;  2JEB B;  3B8H A;  2ZIT A;  2V8P A;  4MU0 A;  1PVG A;  5C0X A;  5A2Q C;  4PRV A;  4BA2 B;  3PRY A;  1S16 A;  1OYS A;  1YHC A;  4LOM A;  1Y4U A;  4EMD A;  1Z0B A;  2PO1 B;  2ZM6 E;  4N3O A;  4RPF A;  4NXN I;  1XMQ I;  4USK A;  1HNZ E;  4JI8 E;  1VI7 A;  1XNR I;  2BA1 D;  5C0X D;  1FWL A;  1XHK A;  4HAC A;  3HUL A;  3OTO I;  5K36 C;  5FLX Q;  1BKN A;  4DV4 E;  3PS3 A;  2JT2 A;  3GLL A;  5JEA C;  4LF8 I;  1FI4 A;  4QNK A;  4B3R E;  2BM1 A;  1HNX I;  4DUZ E;  3LNU A;  2UUA I;  4ZVI A;  2ZBK B;  2VF3 A;  4LF9 I;  4LFA E;  1H7U A;  4BA1 B;  2GO3 A;  2C39 B;  3B4T A;  4AID A;  5K36 A;  3PYG A;  1IBL E;  1XMO E;  2HKJ A;  4DU8 A;  5JEA A;  1N32 I;  5EL9 A;  3M85 D;  2VQF E;  4K0K E;  1MX0 A;  2CGE A;  4DR3 E;  4GKK I;  4DV5 E;  5K36 D;  5ELW A;  4KQV A;  3J81 C;  4DV0 E;  5LL6 R;  4J3D A;  5JEA D;  4DR6 I;  2O1U A;  2UXD E;  1OYP A;  2Z5C B;  2JE6 A;  5LMU I;  1Z0T A;  3L7Z A;  3Q6M A;  4JI4 I;  3M85 G;  1Z5C A;  2V34 A;  3JAM C;  4IS9 A;  2HK2 A;  1NHJ A;  2VES A;  4DV7 I;  4DV2 I;  4KHP I;  4X62 E;  4B3S E;  4LF9 E;  3ZZU A;  2UU9 E;  2C38 B;  4U3D A;  3PYE A;  4JI2 I;  1FWK A;  2IOQ A;  4IFD B;  4JI0 I;  4IZJ B;  5EKW A;  1EA6 A;  2O3Z A;  1FKA E;  4HYM A;  1KTV A;  3P3C A;  3T1H E;  5DRP A;  3ZKB A;  4DU7 A;  2CG9 A;  3V5R A;  2NN6 B;  4DR6 E;  2C37 A;  4JI3 I;  3QT6 A;  4GKJ E;  4IZK B;  1H74 A;  1N34 I;  1H72 C;  2JEB A;  4JI4 E;  1ZM4 A;  5LMN E;  4ED4 A;  4DUY I;  4B3T E;  1N0V C;  4FW6 A;  4DV2 E;  4DXL A;  4QNJ A;  4JI6 E;  4X66 E;  4JI1 I;  4LFB E;  5A2Q Q;  2VQE I;  5DNX A;  2WP8 B; 
#chains in the Genus database with same CATH homology
 2F1D A;  5DNL A;  4QNJ A;  4LPF A;  5EL9 A;  2AE8 A;  4MU0 A;  4MU3 A;  4MU4 A;  4MU1 A;  1RHY A;  4QNK A;  5ELW A;  5DNX A;  4LOM A;  4GQU A;  5EKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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