4QNJA

The structure of wt a. thaliana igpd2 in complex with mn2+ and formate at 1.3a resolution
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
184
structure length
184
Chain Sequence
ARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 61
structure length 184
sequence length 184
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2014-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4qnjA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4qnjA02
1RHYA 4MU4A 5EKWA 5EL9A 4GQUA 4MU3A 4QNJA 4QNKA 5DNXA 5ELWA 4MU0A 4LPFA 2F1DA 2AE8A 5DNLA 4LOMA 4MU1A
chains in the Genus database with same CATH superfamily
2JEBB 3K85A 2IESA 3D4JA 4R1FA 1DARA 4LF7I 4X62E 2ZM6E 3PYEA 1FKAE 1NZ0A 2NN6B 2JE6B 1I94I 2Z5CB 4J3DA 4DR7I 3L7ZA 5L3JA 2A2DA 3QT6A 1Z0TA 1E3HA 1FI4A 2C37B 4JV5I 2JEBA 3P06A 1HNZI 1XNRE 3T1HI 1Z5BA 4DV3E 4DR2E 1HNXE 2Z5BB 4DXLA 2NN6A 2JE6A 4DR1I 2Z5CA 2BM0A 4MU0A 5BR8I 5LMNI 4LF8E 4DR5I 2AJ4A 4ED4A 3NZKA 3P3CA 4FW3A 2UUAI 2C37A 1EI1A 4FW4A 2VQEE 1WUUA 3PS3A 5JEAB 2Z5BA 3GCMA 4JI1E 3PYFA 4DV7I 4FW9A 2HK2A 1BKNA 3JAMQ 3ZZUA 3U1YA 3LPSA 4RPFA 4LFCI 4LFBI 1FNMA 4USMA 2GS8A 1UDOA 5JEAA 4NBQA 1NHIA 4BA2B 1N33I 4PRVA 3J7AM 2UXBI 1K47A 5FLXQ 4DPYA 3PS1A 4MU3A 2V34A 1ZXMA 1P42A 1H72C 4MYTA 2CZ9A 1KKHA 1OYPA 1Z5CA 4DUZE 4DV4E 1XNQE 5JEAC 4IFDB 4BA2A 2UXDI 2UXCI 4DV2E 2WW4A 1N0UA 4FN5A 1VI7A 1XMOE 1N32E 1ZXNA 2Z5EA 1Y6ZA 4LF6E 2HKJA 4YHHE 1UEKA 5FLXC 2X7IA 4UTGA 4B3MI 3ZZ0A 1IBLI 4M1KA 1S4EA 4Z7YA 4JI4E 4NXME 4IFDA 2DEJA 1ZM3A 1U2RA 3CWVA 1B62A 1ZM4A 4MYUA 4X64E 4JI0E 1UDSA 2BA1D 4K0KE 1FJGE 2JEAB 4DPTA 4AIDA 1Z0BA 4B3RI 4JI3I 3P3GA 2BA0G 2PO2B 3LTOA 1PVGA 2AE8A 2V2QA 2UU9I 1S16A 1USUA 1YH8A 4NXNI 4JI2E 4IFDC 2R3VA 2HKEA 3P76A 2CG9A 4HACB 4DR3E 2JT2A 4FW5A 4XTJA 2F4VI 5IT9C 4DR6I 1MU5A 2JEAA 5DRPA 1HNWI 5C0XE 2X36A 4IFDE 2UUBI 2HHHE 4JI8E 2PO2A 2V2VA 4X62I 5C0XD 2O1UA 4IFDD 2ZM6I 2R42A 4GKKE 3T1YE 3P3EA 4P52A 4HACA 2GO3A 4DR4I 2PO1B 3V5RA 4KHPE 2XEXA 2OI2A 3KRNA 3PS2A 3CDIA 4FW6A 2E5LE 4LF9I 3M85G 1Z0CA 1VISA 4GKJE 4DV3I 4DR2I 3GLLA 1HNXI 3B82A 4LF7E 4DPUA 4LCFA 1ELOA 5C0XF 4IFDF 1I94E 1NHHA 2PO1A 3Q6MA 4LF5E 1D6TA 1USVA 3K1JA 4PU9A 1OYRA 3WU5A 2VQEI 4MU1A 4DV5E 1YHCA 3M6AA 2J65A 2V2ZA 1Z0WA 4DPWA 4B3SE 4DV0I 1HNZE 1FWKA 1RR9A 1RREA 1Z59A 5K36B 2NN6C 1FWLA 4AQYE 3H4LA 5DNLA 5DROA 4JI7E 1Y4UA 1XMQE 4B3TE 4IZJB 2BM1A 3Q1QA 3CDJA 2NN6E 3M7ND 4OO1B 4MQYA 4LPFA 3H1CA 1Z5AA 1PKPA 3B4TA 4LFAE 2VQFE 1Y60A 2NN6D 2O1VA 4WUDA 5K36A 5DRRA 1E3PA 3GONA 1RHYA 4JI6E 1IBME 1EA6A 3GMEA 4IZJA 4DUZI 3ZZTA 2IOPA 1ZM9A 4OO1A 4QNKA 1N36E 1XNQI 1QZRA 3J80Q 2A2CA 2ZBKB 1ZM2A 3ZKBA 4LF4E 1XMOI 4OX9I 4WUBA 5K36C 2UXBE 4LF6I 4YHHI 2UUCI 1MX0A 2IERA 5JEAE 1OYSA 2NN6F 1KIJA 3HJCA 4N3OA 1Z0VA 4OZEA 1IBKE 4JI4I 4NXMI 5JEAD 4DV6E 4MDTA 4X65E 4OO1C 4P7AA 1KTVA 1UDQA 5IT9Q 3J80C 2IOQA 4MU4A 4JI5I 2EFGA 1J5EI 4DV1E 4YY3E 4OO1E 3HKMA 5LMUE 4X66E 4FWGA 1B63A 3PRYA 4HY1A 4FWDA 3K17A 5IWAE 4OO1D 4FWHA 1IBLE 2WNRB 4JI2I 2Q2EB 5EL9A 1R6LA 3F0NA 4I3HA 2PNMA 4JYAE 5JEAF 2J7KA 1PIEA 3QT7A 1N0VC 4DR3I 1N34I 1HR0E 4U3DA 2HHHI 4JI8I 3HULA 1XXEA 2HK3A 2WNRA 1KVKA 1NHJA 3UHMA 3OTOE 4NXNE 4OO1F 4AIMA 4ZVIA 4KHPI 2GQ0A 2C38B 3J81Q 4EMDA 1OJ4A 4DR6E 3U1KA 4DUYE 1Z0GA 2E5LI 1XNRI 4GKJI 4DPXA 2VF3A 4LCGA 1UDNA 5GMDA 4LF8I 3QT5A 4LF5I 4DR4E 4IZKB 4DR7E 2C38A 4LOMA 4DV5I 4BA1B 3QT8A 1R6MA 4WUCA 3J81C 4JV5E 1HK7A 2ZITA 4B3SI 2BR2B 4USKA 4LF9E 4QNJA 3PYGA 4JI1I 3T1HE 5A2QQ 5LL6R 2PNZB 4AQYI 5GMEA 2NPFA 4DR1E 4JI7I 5BR8E 4IZKA 2BA1G 5LMNE 1XMQI 4B3TI 2E1RA 4DR5E 2BA0D 3ZM7A 3Q6NA 4BA1A 4GQUA 1Y5YA 2UUAE 4U3BA 1XHKA 4HYMA 2O1WA 2BR2A 4LFAI 2VQFI 2PNZA 1H73A 4DV0E 5FWKA 4DV7E 5A2QC 4KQVA 4JI6I 1IBMI 2VESA 4IS9A 4Z7CA 4LFCE 4PRXA 4LFBE 1N36I 4DV4I 1A6FA 2GO4A 4DV2I 4LF4I 1N33E 2LJPA 4OKGA 1N32I 2BV3A 2PO0B 3DD6A 1Z0EA 3J7AG 1H74A 3B8HA 3JAMC 1IBKI 4DV6I 4X65I 5K36E 4HXZA 3V2UC 3M85D 5C0XB 2PNLA 2UXDE 2UXCE 4AM3A 5K36D 4JG4A 4X64I 5DRQA 4JI0I 4OX9E 4DV1I 2PO0A 3B78A 4YY3I 4K0KI 1FJGI 1H7UA 3WU6A 5LMUI 4X66I 2UUCE 5DNXA 2WP8B 3ZKDA 4IZJD 4B3ME 5IWAI 3LNUA 2C39B 3WU3A 1H7SA 2F1DA 5C0XA 4JYAI 5EKWA 4ISAA 1HR0I 4JI5E 5K36F 1J5EE 4DU8A 2WP8A 4B3RE 4JI3E 2C39A 3PYDA 3M7NG 3OTOI 4GKKI 4UT4A 3T1YI 2HFSA 2UU9E 2V8PA 5C0XC 2CGEA 4LCHA 2DEIA 5ELWA 1Y4SA 1MG7A 2F4VE 2O1TA 3L7ZB 4URLA 1N34E 2CVEA 2HFUA 4DUYI 1HNWE 3WU4A 4DU7A 2O3ZA 4FW7A 2UUBE
chains in the Genus database with same CATH topology
1RHYA 4MU4A 5EKWA 5EL9A 4GQUA 4MU3A 4QNJA 4QNKA 5DNXA 5ELWA 4MU0A 4LPFA 2F1DA 2AE8A 5DNLA 4LOMA 4MU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RHY A;  4MU4 A;  5EKW A;  5EL9 A;  4GQU A;  4MU3 A;  4QNJ A;  4QNK A;  5DNX A;  5ELW A;  4MU0 A;  4LPF A;  2F1D A;  2AE8 A;  5DNL A;  4LOM A;  4MU1 A; 
#chains in the Genus database with same CATH topology
 2JEB B;  3K85 A;  2IES A;  3D4J A;  4R1F A;  1DAR A;  4LF7 I;  4X62 E;  2ZM6 E;  3PYE A;  1FKA E;  1NZ0 A;  2NN6 B;  2JE6 B;  1I94 I;  2Z5C B;  4J3D A;  4DR7 I;  3L7Z A;  5L3J A;  2A2D A;  3QT6 A;  1Z0T A;  1E3H A;  1FI4 A;  2C37 B;  4JV5 I;  2JEB A;  3P06 A;  1HNZ I;  1XNR E;  3T1H I;  1Z5B A;  4DV3 E;  4DR2 E;  1HNX E;  2Z5B B;  4DXL A;  2NN6 A;  2JE6 A;  4DR1 I;  2Z5C A;  2BM0 A;  4MU0 A;  5BR8 I;  5LMN I;  4LF8 E;  4DR5 I;  2AJ4 A;  4ED4 A;  3NZK A;  3P3C A;  4FW3 A;  2UUA I;  2C37 A;  1EI1 A;  4FW4 A;  2VQE E;  1WUU A;  3PS3 A;  5JEA B;  2Z5B A;  3GCM A;  4JI1 E;  3PYF A;  4DV7 I;  4FW9 A;  2HK2 A;  1BKN A;  3JAM Q;  3ZZU A;  3U1Y A;  3LPS A;  4RPF A;  4LFC I;  4LFB I;  1FNM A;  4USM A;  2GS8 A;  1UDO A;  5JEA A;  4NBQ A;  1NHI A;  4BA2 B;  1N33 I;  4PRV A;  3J7A M;  2UXB I;  1K47 A;  5FLX Q;  4DPY A;  3PS1 A;  4MU3 A;  2V34 A;  1ZXM A;  1P42 A;  1H72 C;  4MYT A;  2CZ9 A;  1KKH A;  1OYP A;  1Z5C A;  4DUZ E;  4DV4 E;  1XNQ E;  5JEA C;  4IFD B;  4BA2 A;  2UXD I;  2UXC I;  4DV2 E;  2WW4 A;  1N0U A;  4FN5 A;  1VI7 A;  1XMO E;  1N32 E;  1ZXN A;  2Z5E A;  1Y6Z A;  4LF6 E;  2HKJ A;  4YHH E;  1UEK A;  5FLX C;  2X7I A;  4UTG A;  4B3M I;  3ZZ0 A;  1IBL I;  4M1K A;  1S4E A;  4Z7Y A;  4JI4 E;  4NXM E;  4IFD A;  2DEJ A;  1ZM3 A;  1U2R A;  3CWV A;  1B62 A;  1ZM4 A;  4MYU A;  4X64 E;  4JI0 E;  1UDS A;  2BA1 D;  4K0K E;  1FJG E;  2JEA B;  4DPT A;  4AID A;  1Z0B A;  4B3R I;  4JI3 I;  3P3G A;  2BA0 G;  2PO2 B;  3LTO A;  1PVG A;  2AE8 A;  2V2Q A;  2UU9 I;  1S16 A;  1USU A;  1YH8 A;  4NXN I;  4JI2 E;  4IFD C;  2R3V A;  2HKE A;  3P76 A;  2CG9 A;  4HAC B;  4DR3 E;  2JT2 A;  4FW5 A;  4XTJ A;  2F4V I;  5IT9 C;  4DR6 I;  1MU5 A;  2JEA A;  5DRP A;  1HNW I;  5C0X E;  2X36 A;  4IFD E;  2UUB I;  2HHH E;  4JI8 E;  2PO2 A;  2V2V A;  4X62 I;  5C0X D;  2O1U A;  4IFD D;  2ZM6 I;  2R42 A;  4GKK E;  3T1Y E;  3P3E A;  4P52 A;  4HAC A;  2GO3 A;  4DR4 I;  2PO1 B;  3V5R A;  4KHP E;  2XEX A;  2OI2 A;  3KRN A;  3PS2 A;  3CDI A;  4FW6 A;  2E5L E;  4LF9 I;  3M85 G;  1Z0C A;  1VIS A;  4GKJ E;  4DV3 I;  4DR2 I;  3GLL A;  1HNX I;  3B82 A;  4LF7 E;  4DPU A;  4LCF A;  1ELO A;  5C0X F;  4IFD F;  1I94 E;  1NHH A;  2PO1 A;  3Q6M A;  4LF5 E;  1D6T A;  1USV A;  3K1J A;  4PU9 A;  1OYR A;  3WU5 A;  2VQE I;  4MU1 A;  4DV5 E;  1YHC A;  3M6A A;  2J65 A;  2V2Z A;  1Z0W A;  4DPW A;  4B3S E;  4DV0 I;  1HNZ E;  1FWK A;  1RR9 A;  1RRE A;  1Z59 A;  5K36 B;  2NN6 C;  1FWL A;  4AQY E;  3H4L A;  5DNL A;  5DRO A;  4JI7 E;  1Y4U A;  1XMQ E;  4B3T E;  4IZJ B;  2BM1 A;  3Q1Q A;  3CDJ A;  2NN6 E;  3M7N D;  4OO1 B;  4MQY A;  4LPF A;  3H1C A;  1Z5A A;  1PKP A;  3B4T A;  4LFA E;  2VQF E;  1Y60 A;  2NN6 D;  2O1V A;  4WUD A;  5K36 A;  5DRR A;  1E3P A;  3GON A;  1RHY A;  4JI6 E;  1IBM E;  1EA6 A;  3GME A;  4IZJ A;  4DUZ I;  3ZZT A;  2IOP A;  1ZM9 A;  4OO1 A;  4QNK A;  1N36 E;  1XNQ I;  1QZR A;  3J80 Q;  2A2C A;  2ZBK B;  1ZM2 A;  3ZKB A;  4LF4 E;  1XMO I;  4OX9 I;  4WUB A;  5K36 C;  2UXB E;  4LF6 I;  4YHH I;  2UUC I;  1MX0 A;  2IER A;  5JEA E;  1OYS A;  2NN6 F;  1KIJ A;  3HJC A;  4N3O A;  1Z0V A;  4OZE A;  1IBK E;  4JI4 I;  4NXM I;  5JEA D;  4DV6 E;  4MDT A;  4X65 E;  4OO1 C;  4P7A A;  1KTV A;  1UDQ A;  5IT9 Q;  3J80 C;  2IOQ A;  4MU4 A;  4JI5 I;  2EFG A;  1J5E I;  4DV1 E;  4YY3 E;  4OO1 E;  3HKM A;  5LMU E;  4X66 E;  4FWG A;  1B63 A;  3PRY A;  4HY1 A;  4FWD A;  3K17 A;  5IWA E;  4OO1 D;  4FWH A;  1IBL E;  2WNR B;  4JI2 I;  2Q2E B;  5EL9 A;  1R6L A;  3F0N A;  4I3H A;  2PNM A;  4JYA E;  5JEA F;  2J7K A;  1PIE A;  3QT7 A;  1N0V C;  4DR3 I;  1N34 I;  1HR0 E;  4U3D A;  2HHH I;  4JI8 I;  3HUL A;  1XXE A;  2HK3 A;  2WNR A;  1KVK A;  1NHJ A;  3UHM A;  3OTO E;  4NXN E;  4OO1 F;  4AIM A;  4ZVI A;  4KHP I;  2GQ0 A;  2C38 B;  3J81 Q;  4EMD A;  1OJ4 A;  4DR6 E;  3U1K A;  4DUY E;  1Z0G A;  2E5L I;  1XNR I;  4GKJ I;  4DPX A;  2VF3 A;  4LCG A;  1UDN A;  5GMD A;  4LF8 I;  3QT5 A;  4LF5 I;  4DR4 E;  4IZK B;  4DR7 E;  2C38 A;  4LOM A;  4DV5 I;  4BA1 B;  3QT8 A;  1R6M A;  4WUC A;  3J81 C;  4JV5 E;  1HK7 A;  2ZIT A;  4B3S I;  2BR2 B;  4USK A;  4LF9 E;  4QNJ A;  3PYG A;  4JI1 I;  3T1H E;  5A2Q Q;  5LL6 R;  2PNZ B;  4AQY I;  5GME A;  2NPF A;  4DR1 E;  4JI7 I;  5BR8 E;  4IZK A;  2BA1 G;  5LMN E;  1XMQ I;  4B3T I;  2E1R A;  4DR5 E;  2BA0 D;  3ZM7 A;  3Q6N A;  4BA1 A;  4GQU A;  1Y5Y A;  2UUA E;  4U3B A;  1XHK A;  4HYM A;  2O1W A;  2BR2 A;  4LFA I;  2VQF I;  2PNZ A;  1H73 A;  4DV0 E;  5FWK A;  4DV7 E;  5A2Q C;  4KQV A;  4JI6 I;  1IBM I;  2VES A;  4IS9 A;  4Z7C A;  4LFC E;  4PRX A;  4LFB E;  1N36 I;  4DV4 I;  1A6F A;  2GO4 A;  4DV2 I;  4LF4 I;  1N33 E;  2LJP A;  4OKG A;  1N32 I;  2BV3 A;  2PO0 B;  3DD6 A;  1Z0E A;  3J7A G;  1H74 A;  3B8H A;  3JAM C;  1IBK I;  4DV6 I;  4X65 I;  5K36 E;  4HXZ A;  3V2U C;  3M85 D;  5C0X B;  2PNL A;  2UXD E;  2UXC E;  4AM3 A;  5K36 D;  4JG4 A;  4X64 I;  5DRQ A;  4JI0 I;  4OX9 E;  4DV1 I;  2PO0 A;  3B78 A;  4YY3 I;  4K0K I;  1FJG I;  1H7U A;  3WU6 A;  5LMU I;  4X66 I;  2UUC E;  5DNX A;  2WP8 B;  3ZKD A;  4IZJ D;  4B3M E;  5IWA I;  3LNU A;  2C39 B;  3WU3 A;  1H7S A;  2F1D A;  5C0X A;  4JYA I;  5EKW A;  4ISA A;  1HR0 I;  4JI5 E;  5K36 F;  1J5E E;  4DU8 A;  2WP8 A;  4B3R E;  4JI3 E;  2C39 A;  3PYD A;  3M7N G;  3OTO I;  4GKK I;  4UT4 A;  3T1Y I;  2HFS A;  2UU9 E;  2V8P A;  5C0X C;  2CGE A;  4LCH A;  2DEI A;  5ELW A;  1Y4S A;  1MG7 A;  2F4V E;  2O1T A;  3L7Z B;  4URL A;  1N34 E;  2CVE A;  2HFU A;  4DUY I;  1HNW E;  3WU4 A;  4DU7 A;  2O3Z A;  4FW7 A;  2UUB E; 
#chains in the Genus database with same CATH homology
 1RHY A;  4MU4 A;  5EKW A;  5EL9 A;  4GQU A;  4MU3 A;  4QNJ A;  4QNK A;  5DNX A;  5ELW A;  4MU0 A;  4LPF A;  2F1D A;  2AE8 A;  5DNL A;  4LOM A;  4MU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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