4MU0A

The structure of wt a. thaliana igpd2 in complex with mn2+ and 1,2,4-triazole at 1.3 a resolution
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
185
structure length
185
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 58
structure length 185
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A02
4MU0A 2F1DA 4MU4A 4MU1A 4MU3A 5DNLA 5DNXA 2AE8A 5EKWA 4GQUA 4LOMA 5EL9A 1RHYA 4QNKA 4LPFA 4QNJA 5ELWA
chains in the Genus database with same CATH superfamily
4JI5E 3LPSA 5EKWA 5C0XF 2JEBB 2Z5BB 2JEAA 3L7ZA 1FI4A 5JEAE 4B3ME 1USUA 2WNRA 4NXNI 2JT2A 3T1HE 3Q6MA 1N36E 2AJ4A 1ZM3A 2DEJA 4DV2E 3QT6A 4DR2E 2GQ0A 4LFBE 2NN6A 2R42A 4LF7I 2HFUA 1XNQE 1KVKA 4NXNE 2PO2B 3K17A 1MX0A 3GONA 4PRVA 1Z5AA 4WUBA 4IZJA 2BR2B 1VI7A 4X66E 1MG7A 4B3TI 4DR1E 1KTVA 1ZM2A 3ZZ0A 4UTGA 4DR6I 4LF7E 4DV6I 4LF8I 1OYSA 1KKHA 5GMEA 1QZRA 1XMOI 4B3TE 4JV5I 2PO0B 4B3SI 2CVEA 2E1RA 4DV0I 1E3PA 4OO1C 3B4TA 4USMA 1XNRI 1IBKI 4LOMA 4BA1B 4FW9A 2PO1B 5IT9Q 1Z0VA 4HACB 3ZKBA 2Z5CB 3ZZTA 1FJGI 1J5EI 2HK3A 3T1YI 1XNRE 3M85D 2JEBA 2V8PA 2Z5BA 4M1KA 4LF5E 2OI2A 1OYPA 4NBQA 5L3JA 4DUYE 3T1YE 1YHCA 2X7IA 5K36B 4B3RI 4HYMA 2VQEE 1A6FA 4IFDA 3ZKDA 3J80C 3PYGA 1OJ4A 2UUCE 2NPFA 3M7ND 2IESA 1HK7A 2HFSA 2BR2A 4HXZA 2F4VI 4X62E 2R3VA 4BA2B 1Z0TA 2HKEA 1XMQI 4AIDA 4IFDE 4MDTA 3OTOE 2XEXA 5K36F 2V2QA 4JYAI 4LF4I 3V5RA 1I94I 4KHPE 4MU3A 2F4VE 2PO0A 4IZKB 1NZ0A 5FLXC 4AQYE 4OX9I 5DNXA 5FWKA 1XMQE 4DUZE 4JI5I 4DV3E 3QT7A 4JI8E 4JYAE 4DPXA 2C39B 4BA1A 3P06A 4DU7A 2PO1A 4HACA 2O1UA 2C38B 4JI0E 2PNZB 4B3MI 4OX9E 2NN6D 1UDQA 4LPFA 4QNJA 2Z5EA 3T1HI 4ED4A 1N36I 2DEIA 2A2DA 2PNMA 3QT5A 4DR5I 1UDSA 4DV2I 4NXME 4DR2I 1Y4SA 4IZJD 4LFBI 3WU5A 1XNQI 5GMDA 3P3CA 4JI7E 3K85A 4DR5E 4IS9A 2UXDE 4X66I 2A2CA 1Z0WA 4DR1I 4LF9E 3M85G 3ZZUA 2Q2EB 3Q6NA 4WUCA 4YHHI 3F0NA 1Z5CA 4PRXA 2UXBE 1P42A 4FW7A 4USKA 2O1TA 4MYUA 1PVGA 4X64E 3ZM7A 1YH8A 1IBLE 1PIEA 4J3DA 4BA2A 2V34A 4YHHE 3NZKA 3WU4A 3WU3A 1ZM9A 4OO1B 1Y5YA 5C0XA 3M7NG 3CDIA 2O1VA 5ELWA 2NN6E 2CG9A 2V2ZA 4P52A 2UXCE 1ZXMA 4DPTA 3PS3A 4PU9A 4R1FA 4IFDC 4DV4I 3Q1QA 1Z59A 2IOQA 2AE8A 4MQYA 1HNXE 1RR9A 3CDJA 5IT9C 1Y6ZA 1RHYA 1HNZI 2UUAE 2C39A 2F1DA 4IFDD 4LF5I 1ZM4A 3QT8A 3PRYA 2C38A 2EFGA 4FW6A 2PNZA 4K0KE 4DV4E 4DUYI 2J7KA 5C0XE 2J65A 1H74A 2CGEA 3CWVA 4UT4A 4FN5A 3V2UC 1NHIA 2VQEI 1RREA 1N33E 4FWGA 4OO1F 3B8HA 4EMDA 5JEAB 1HNZE 5LMUE 2UUCI 2VF3A 4DV5E 2VQFE 4DV1I 2WW4A 4HY1A 4FWDA 2UU9E 3KRNA 4DPWA 4X62I 5A2QC 3P76A 5A2QQ 2UUBE 5EL9A 5IWAI 4U3DA 4DPUA 4JG4A 4Z7YA 1Z0BA 1K47A 2PO2A 3L7ZB 3OTOI 4DV7E 4DV1E 4DXLA 1WUUA 4LFAE 4YY3E 4KHPI 5JEAF 4LCHA 4AQYI 1KIJA 1N34I 4WUDA 5IWAE 1Z0GA 1FNMA 4JI4E 4DUZI 1XHKA 4ISAA 4DV3I 4MYTA 4OO1A 4JI8I 1FKAE 2BM0A 3PYEA 4JI3I 2HKJA 2IERA 1N0VC 3PS1A 4GKKE 1D6TA 2BV3A 4JI0I 1N34E 1ELOA 4IZJB 4P7AA 3HJCA 5LMNI 1S4EA 1HNWE 3PYDA 2NN6C 1UEKA 4JI3E 4NXMI 4OKGA 2HHHE 2O3ZA 2PNLA 2X36A 2Z5CA 4DU8A 5LMNE 1R6MA 1U2RA 4JI7I 4JI6I 1E3HA 1DARA 2UXDI 2O1WA 4JI2E 5JEAA 4LF9I 3U1KA 4DR4E 5C0XC 1UDNA 1MU5A 3P3GA 1EA6A 4MU1A 4X65E 2ZM6E 2UXBI 5K36A 4JI6E 1EI1A 2GS8A 4X64I 5C0XD 1FWKA 1UDOA 1H7UA 2C37B 4N3OA 1IBME 3M6AA 1IBLI 1HR0E 2IOPA 1NHHA 2BA1G 2V2VA 3LNUA 1Y4UA 4DR7E 3LTOA 4I3HA 2UXCI 4JI1E 5K36E 2ZITA 4IFDB 1H73A 4OZEA 4KQVA 1HNXI 4LF6I 2UUAI 5DRPA 4RPFA 1OYRA 4URLA 2E5LI 4K0KI 4IZKA 4GKJI 2BA0D 2BM1A 3PYFA 4LF6E 1Y60A 5BR8I 1N33I 4DR3I 1PKPA 3D4JA 3H4LA 2E5LE 5DROA 5LMUI 4FW3A 4GKJE 4DV5I 1R6LA 4GQUA 3J7AG 1B63A 2VQFI 4IFDF 2JE6B 1VISA 4ZVIA 2UU9I 5BR8E 4DR6E 4MU0A 4DR3E 3P3EA 4DV6E 4FW5A 2HK2A 2UUBI 4LF8E 1XXEA 3J81C 2BA1D 3J81Q 1XMOE 3GCMA 1H72C 4DV7I 4JV5E 1USVA 4B3SE 4LFAI 4OO1D 4U3BA 3B78A 4YY3I 2C37A 2WP8B 4DV0E 3HKMA 4JI4I 1BKNA 1FWLA 1N32I 5DRQA 1IBKE 4DPYA 4LCGA 2GO3A 5DRRA 4LCFA 2JEAB 3B82A 4LFCI 3UHMA 1FJGE 1J5EE 2WNRB 4GKKI 3WU6A 1NHJA 3DD6A 1N32E 5JEAC 1HNWI 5LL6R 1N0UA 2NN6B 4LFCE 3J80Q 4FW4A 2HHHI 2GO4A 5K36C 1H7SA 5JEAD 4B3RE 3GLLA 2VESA 2CZ9A 1Z0EA 2ZBKB 4MU4A 5K36D 5DNLA 4JI2I 4Z7CA 1B62A 1Z5BA 4DR4I 4FWHA 5C0XB 4X65I 2ZM6I 4OO1E 4XTJA 2BA0G 2JE6A 4AIMA 2NN6F 1S16A 3JAMC 5FLXQ 3JAMQ 1IBMI 1Z0CA 1HR0I 4LF4E 2LJPA 3K1JA 3HULA 3J7AM 1ZXNA 3U1YA 3PS2A 4AM3A 1I94E 4DR7I 3H1CA 3GMEA 4JI1I 4QNKA 2WP8A
chains in the Genus database with same CATH topology
4MU0A 2F1DA 4MU4A 4MU1A 4MU3A 5DNLA 5DNXA 2AE8A 5EKWA 4GQUA 4LOMA 5EL9A 1RHYA 4QNKA 4LPFA 4QNJA 5ELWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU0 A;  2F1D A;  4MU4 A;  4MU1 A;  4MU3 A;  5DNL A;  5DNX A;  2AE8 A;  5EKW A;  4GQU A;  4LOM A;  5EL9 A;  1RHY A;  4QNK A;  4LPF A;  4QNJ A;  5ELW A; 
#chains in the Genus database with same CATH topology
 4JI5 E;  3LPS A;  5EKW A;  5C0X F;  2JEB B;  2Z5B B;  2JEA A;  3L7Z A;  1FI4 A;  5JEA E;  4B3M E;  1USU A;  2WNR A;  4NXN I;  2JT2 A;  3T1H E;  3Q6M A;  1N36 E;  2AJ4 A;  1ZM3 A;  2DEJ A;  4DV2 E;  3QT6 A;  4DR2 E;  2GQ0 A;  4LFB E;  2NN6 A;  2R42 A;  4LF7 I;  2HFU A;  1XNQ E;  1KVK A;  4NXN E;  2PO2 B;  3K17 A;  1MX0 A;  3GON A;  4PRV A;  1Z5A A;  4WUB A;  4IZJ A;  2BR2 B;  1VI7 A;  4X66 E;  1MG7 A;  4B3T I;  4DR1 E;  1KTV A;  1ZM2 A;  3ZZ0 A;  4UTG A;  4DR6 I;  4LF7 E;  4DV6 I;  4LF8 I;  1OYS A;  1KKH A;  5GME A;  1QZR A;  1XMO I;  4B3T E;  4JV5 I;  2PO0 B;  4B3S I;  2CVE A;  2E1R A;  4DV0 I;  1E3P A;  4OO1 C;  3B4T A;  4USM A;  1XNR I;  1IBK I;  4LOM A;  4BA1 B;  4FW9 A;  2PO1 B;  5IT9 Q;  1Z0V A;  4HAC B;  3ZKB A;  2Z5C B;  3ZZT A;  1FJG I;  1J5E I;  2HK3 A;  3T1Y I;  1XNR E;  3M85 D;  2JEB A;  2V8P A;  2Z5B A;  4M1K A;  4LF5 E;  2OI2 A;  1OYP A;  4NBQ A;  5L3J A;  4DUY E;  3T1Y E;  1YHC A;  2X7I A;  5K36 B;  4B3R I;  4HYM A;  2VQE E;  1A6F A;  4IFD A;  3ZKD A;  3J80 C;  3PYG A;  1OJ4 A;  2UUC E;  2NPF A;  3M7N D;  2IES A;  1HK7 A;  2HFS A;  2BR2 A;  4HXZ A;  2F4V I;  4X62 E;  2R3V A;  4BA2 B;  1Z0T A;  2HKE A;  1XMQ I;  4AID A;  4IFD E;  4MDT A;  3OTO E;  2XEX A;  5K36 F;  2V2Q A;  4JYA I;  4LF4 I;  3V5R A;  1I94 I;  4KHP E;  4MU3 A;  2F4V E;  2PO0 A;  4IZK B;  1NZ0 A;  5FLX C;  4AQY E;  4OX9 I;  5DNX A;  5FWK A;  1XMQ E;  4DUZ E;  4JI5 I;  4DV3 E;  3QT7 A;  4JI8 E;  4JYA E;  4DPX A;  2C39 B;  4BA1 A;  3P06 A;  4DU7 A;  2PO1 A;  4HAC A;  2O1U A;  2C38 B;  4JI0 E;  2PNZ B;  4B3M I;  4OX9 E;  2NN6 D;  1UDQ A;  4LPF A;  4QNJ A;  2Z5E A;  3T1H I;  4ED4 A;  1N36 I;  2DEI A;  2A2D A;  2PNM A;  3QT5 A;  4DR5 I;  1UDS A;  4DV2 I;  4NXM E;  4DR2 I;  1Y4S A;  4IZJ D;  4LFB I;  3WU5 A;  1XNQ I;  5GMD A;  3P3C A;  4JI7 E;  3K85 A;  4DR5 E;  4IS9 A;  2UXD E;  4X66 I;  2A2C A;  1Z0W A;  4DR1 I;  4LF9 E;  3M85 G;  3ZZU A;  2Q2E B;  3Q6N A;  4WUC A;  4YHH I;  3F0N A;  1Z5C A;  4PRX A;  2UXB E;  1P42 A;  4FW7 A;  4USK A;  2O1T A;  4MYU A;  1PVG A;  4X64 E;  3ZM7 A;  1YH8 A;  1IBL E;  1PIE A;  4J3D A;  4BA2 A;  2V34 A;  4YHH E;  3NZK A;  3WU4 A;  3WU3 A;  1ZM9 A;  4OO1 B;  1Y5Y A;  5C0X A;  3M7N G;  3CDI A;  2O1V A;  5ELW A;  2NN6 E;  2CG9 A;  2V2Z A;  4P52 A;  2UXC E;  1ZXM A;  4DPT A;  3PS3 A;  4PU9 A;  4R1F A;  4IFD C;  4DV4 I;  3Q1Q A;  1Z59 A;  2IOQ A;  2AE8 A;  4MQY A;  1HNX E;  1RR9 A;  3CDJ A;  5IT9 C;  1Y6Z A;  1RHY A;  1HNZ I;  2UUA E;  2C39 A;  2F1D A;  4IFD D;  4LF5 I;  1ZM4 A;  3QT8 A;  3PRY A;  2C38 A;  2EFG A;  4FW6 A;  2PNZ A;  4K0K E;  4DV4 E;  4DUY I;  2J7K A;  5C0X E;  2J65 A;  1H74 A;  2CGE A;  3CWV A;  4UT4 A;  4FN5 A;  3V2U C;  1NHI A;  2VQE I;  1RRE A;  1N33 E;  4FWG A;  4OO1 F;  3B8H A;  4EMD A;  5JEA B;  1HNZ E;  5LMU E;  2UUC I;  2VF3 A;  4DV5 E;  2VQF E;  4DV1 I;  2WW4 A;  4HY1 A;  4FWD A;  2UU9 E;  3KRN A;  4DPW A;  4X62 I;  5A2Q C;  3P76 A;  5A2Q Q;  2UUB E;  5EL9 A;  5IWA I;  4U3D A;  4DPU A;  4JG4 A;  4Z7Y A;  1Z0B A;  1K47 A;  2PO2 A;  3L7Z B;  3OTO I;  4DV7 E;  4DV1 E;  4DXL A;  1WUU A;  4LFA E;  4YY3 E;  4KHP I;  5JEA F;  4LCH A;  4AQY I;  1KIJ A;  1N34 I;  4WUD A;  5IWA E;  1Z0G A;  1FNM A;  4JI4 E;  4DUZ I;  1XHK A;  4ISA A;  4DV3 I;  4MYT A;  4OO1 A;  4JI8 I;  1FKA E;  2BM0 A;  3PYE A;  4JI3 I;  2HKJ A;  2IER A;  1N0V C;  3PS1 A;  4GKK E;  1D6T A;  2BV3 A;  4JI0 I;  1N34 E;  1ELO A;  4IZJ B;  4P7A A;  3HJC A;  5LMN I;  1S4E A;  1HNW E;  3PYD A;  2NN6 C;  1UEK A;  4JI3 E;  4NXM I;  4OKG A;  2HHH E;  2O3Z A;  2PNL A;  2X36 A;  2Z5C A;  4DU8 A;  5LMN E;  1R6M A;  1U2R A;  4JI7 I;  4JI6 I;  1E3H A;  1DAR A;  2UXD I;  2O1W A;  4JI2 E;  5JEA A;  4LF9 I;  3U1K A;  4DR4 E;  5C0X C;  1UDN A;  1MU5 A;  3P3G A;  1EA6 A;  4MU1 A;  4X65 E;  2ZM6 E;  2UXB I;  5K36 A;  4JI6 E;  1EI1 A;  2GS8 A;  4X64 I;  5C0X D;  1FWK A;  1UDO A;  1H7U A;  2C37 B;  4N3O A;  1IBM E;  3M6A A;  1IBL I;  1HR0 E;  2IOP A;  1NHH A;  2BA1 G;  2V2V A;  3LNU A;  1Y4U A;  4DR7 E;  3LTO A;  4I3H A;  2UXC I;  4JI1 E;  5K36 E;  2ZIT A;  4IFD B;  1H73 A;  4OZE A;  4KQV A;  1HNX I;  4LF6 I;  2UUA I;  5DRP A;  4RPF A;  1OYR A;  4URL A;  2E5L I;  4K0K I;  4IZK A;  4GKJ I;  2BA0 D;  2BM1 A;  3PYF A;  4LF6 E;  1Y60 A;  5BR8 I;  1N33 I;  4DR3 I;  1PKP A;  3D4J A;  3H4L A;  2E5L E;  5DRO A;  5LMU I;  4FW3 A;  4GKJ E;  4DV5 I;  1R6L A;  4GQU A;  3J7A G;  1B63 A;  2VQF I;  4IFD F;  2JE6 B;  1VIS A;  4ZVI A;  2UU9 I;  5BR8 E;  4DR6 E;  4MU0 A;  4DR3 E;  3P3E A;  4DV6 E;  4FW5 A;  2HK2 A;  2UUB I;  4LF8 E;  1XXE A;  3J81 C;  2BA1 D;  3J81 Q;  1XMO E;  3GCM A;  1H72 C;  4DV7 I;  4JV5 E;  1USV A;  4B3S E;  4LFA I;  4OO1 D;  4U3B A;  3B78 A;  4YY3 I;  2C37 A;  2WP8 B;  4DV0 E;  3HKM A;  4JI4 I;  1BKN A;  1FWL A;  1N32 I;  5DRQ A;  1IBK E;  4DPY A;  4LCG A;  2GO3 A;  5DRR A;  4LCF A;  2JEA B;  3B82 A;  4LFC I;  3UHM A;  1FJG E;  1J5E E;  2WNR B;  4GKK I;  3WU6 A;  1NHJ A;  3DD6 A;  1N32 E;  5JEA C;  1HNW I;  5LL6 R;  1N0U A;  2NN6 B;  4LFC E;  3J80 Q;  4FW4 A;  2HHH I;  2GO4 A;  5K36 C;  1H7S A;  5JEA D;  4B3R E;  3GLL A;  2VES A;  2CZ9 A;  1Z0E A;  2ZBK B;  4MU4 A;  5K36 D;  5DNL A;  4JI2 I;  4Z7C A;  1B62 A;  1Z5B A;  4DR4 I;  4FWH A;  5C0X B;  4X65 I;  2ZM6 I;  4OO1 E;  4XTJ A;  2BA0 G;  2JE6 A;  4AIM A;  2NN6 F;  1S16 A;  3JAM C;  5FLX Q;  3JAM Q;  1IBM I;  1Z0C A;  1HR0 I;  4LF4 E;  2LJP A;  3K1J A;  3HUL A;  3J7A M;  1ZXN A;  3U1Y A;  3PS2 A;  4AM3 A;  1I94 E;  4DR7 I;  3H1C A;  3GME A;  4JI1 I;  4QNK A;  2WP8 A; 
#chains in the Genus database with same CATH homology
 4MU0 A;  2F1D A;  4MU4 A;  4MU1 A;  4MU3 A;  5DNL A;  5DNX A;  2AE8 A;  5EKW A;  4GQU A;  4LOM A;  5EL9 A;  1RHY A;  4QNK A;  4LPF A;  4QNJ A;  5ELW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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