4MU0A

The structure of wt a. thaliana igpd2 in complex with mn2+ and 1,2,4-triazole at 1.3 a resolution
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
185
structure length
185
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 58
structure length 185
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A02
4GQUA 4MU3A 4QNJA 5DNLA 2AE8A 4MU1A 5EKWA 1RHYA 5DNXA 4LPFA 4LOMA 4MU0A 5ELWA 2F1DA 5EL9A 4MU4A 4QNKA
chains in the Genus database with same CATH superfamily
4DV0E 3M85D 4DR1I 2VQFE 1EA6A 4LFBE 4DV2I 4FW7A 4RPFA 5JEAD 4OO1A 4LF8E 4HACB 4JI0I 1I94E 2HK2A 5EL9A 1Z0VA 4LF7E 2NN6E 4DU7A 4GKKI 4DV6I 3P76A 2HK3A 3PYGA 1N0UA 4PU9A 4IFDB 1KTVA 3QT8A 3QT6A 1PVGA 1Y6ZA 5C0XE 5A2QQ 5JEAF 3ZZTA 3B4TA 4BA2B 2C39B 1J5EE 2BR2A 2DEIA 2V2QA 1HNWI 2NN6C 2A2DA 4JYAI 4HY1A 4DR7I 5IWAI 2UUCI 4X64E 4DR4E 4IZJA 2ZBKB 2F4VI 1H7UA 4X65E 4R1FA 1MG7A 5DNLA 2JEBB 1UDNA 5GMEA 2NPFA 1FJGE 5K36D 1EI1A 4JI2I 1XMQI 2UXBI 4HXZA 5JEAE 4JI4I 3P3EA 3J81Q 1A6FA 1S4EA 1OYSA 2J65A 5A2QC 4I3HA 3K85A 4IFDF 1USUA 4IZKB 2ZITA 2UU9E 2WNRB 1ZM2A 3CDIA 3HKMA 2A2CA 4B3ME 1RR9A 3L7ZB 1E3PA 1Z5CA 1XMQE 2R3VA 2C37A 4DV3E 5IT9Q 2NN6B 4DR3I 3P3GA 4OO1D 2IESA 2VF3A 2Z5BB 4B3TE 5JEAC 4QNJA 4AQYI 4PRVA 4LFAE 4NXNI 4JI5I 4JG4A 5LMNI 1HR0E 4DR5I 4DV5E 4BA1A 4Z7CA 4DPTA 2UUBE 1ZM3A 2OI2A 1XNRI 4OO1F 3J81C 3QT5A 4IFDE 2J7KA 4B3SI 1NHIA 1USVA 1Z0EA 2Z5CB 4DR2I 1XMOI 1HNZE 1P42A 3ZZUA 4OX9E 2ZM6I 4IZJD 1B62A 2E5LE 1R6MA 1N34I 1IBMI 1KVKA 2JT2A 1H74A 1Z5AA 4IS9A 2DEJA 4U3BA 3Q6MA 5JEAB 4JI7I 4JI8E 1OJ4A 1S16A 1UDOA 2PNZA 5DROA 3CDJA 3Q6NA 4LFBI 4NXME 1N32E 1YHCA 4B3RE 2O1WA 4LF8I 3HULA 2JEAB 1I94I 1PKPA 1ELOA 1NHHA 1RREA 3HJCA 4LF7I 1IBKE 1Z0GA 2IOQA 4LOMA 3GLLA 3V2UC 1YH8A 2PO2B 1RHYA 2V8PA 2PO1B 2CZ9A 3P06A 1FNMA 1VI7A 2AJ4A 1Z59A 4N3OA 4OO1C 2PO0B 4JI6E 1J5EI 2F1DA 1HNXE 4DU8A 3B78A 5DRRA 4X64I 4DR4I 4LF5I 3PYEA 4WUBA 2JE6B 2C38A 2WW4A 4QNKA 4X65I 3PS2A 2IOPA 1XXEA 3DD6A 1FJGI 2BV3A 4USMA 4DV7I 1IBLI 1N33I 4LFCE 1UDQA 2HKJA 4JI3I 4LF5E 3GCMA 2HHHI 4MDTA 1Y4SA 3U1KA 3ZM7A 2UU9I 3NZKA 4B3MI 4OO1B 3CWVA 4MYTA 3ZKBA 4MU4A 5FLXQ 5DRQA 3L7ZA 3QT7A 4DV3I 2GO4A 3B8HA 4LCHA 4DV7E 4LF4E 1IBLE 1N33E 3WU6A 1N36E 2NN6A 4JI3E 1Z0TA 2WP8B 2HHHE 1MU5A 4B3TI 4DV1I 4HYMA 1Z5BA 4LF9E 2Z5BA 5LL6R 4LFAI 3LNUA 5K36F 1HR0I 4K0KE 4DV5I 5C0XA 4FW3A 4WUDA 4FW5A 2UUBI 2BR2B 2O1UA 1DARA 4FW6A 4OZEA 3LPSA 4IZJB 3T1HI 4DV1E 4UT4A 4U3DA 5ELWA 4AIDA 1QZRA 1HNZI 2Z5CA 4OX9I 3JAMQ 5FLXC 2E5LI 4FW4A 5BR8I 3K17A 4Z7YA 3ZZ0A 2UXDE 4FN5A 3PYDA 3T1HE 5K36E 4GKJE 4JI8I 4EMDA 1OYRA 5JEAA 3J80Q 3M6AA 3J7AG 4LCGA 4LCFA 4NXMI 1Z0WA 4DR6E 1BKNA 4URLA 1N32I 4B3RI 5IT9C 2X7IA 5BR8E 2C37B 4DPUA 1IBKI 1E3HA 4XTJA 4X62E 2PNLA 1UEKA 4DXLA 4JI1I 5K36C 3JAMC 4UTGA 1Z0BA 4OO1E 1WUUA 4X66E 4LF6E 1FI4A 2O1TA 4BA1B 3GONA 1MX0A 4JV5E 4JI6I 2Z5EA 3GMEA 5L3JA 4HACA 3M7NG 4FW9A 1HNXI 5C0XD 1Z0CA 3PS1A 4DUYE 4IFDA 4JI1E 4WUCA 2VQEI 5LMUE 4MQYA 3OTOI 4DPYA 1ZM4A 2O1VA 4P7AA 2JE6A 5GMDA 1D6TA 4MU3A 1KKHA 2BM1A 4AM3A 4BA2A 5C0XF 2HFUA 2C39A 4LFCI 3V5RA 3H4LA 5K36B 3WU5A 2VQEE 2VESA 3T1YE 4FWDA 3OTOE 1PIEA 2GS8A 4DUZE 4J3DA 4MU0A 3K1JA 4ZVIA 3WU3A 4YHHE 2UUAI 1XNQE 2HFSA 2JEBA 4KHPE 3KRNA 4LF4I 1XHKA 3ZKDA 1K47A 1N36I 3UHMA 1OYPA 4DR1E 2BM0A 2WP8A 4NBQA 4LF9I 3PS3A 2V2VA 3PYFA 5EKWA 4DV2E 4PRXA 1ZXMA 4IZKA 2PNZB 1KIJA 4K0KI 2WNRA 2UUAE 4JI0E 2AE8A 1Y4UA 4GKKE 4DV6E 1U2RA 1H72C 4KQVA 2C38B 5DRPA 2UXCI 3H1CA 2IERA 4IFDD 4FWGA 4DPXA 5C0XC 2UXDI 2V2ZA 5DNXA 4ISAA 1HNWE 4JYAE 4P52A 3D4JA 4DR7E 4GKJI 2PNMA 5IWAE 2UUCE 1NZ0A 2UXCE 1ZM9A 3J7AM 2E1RA 4AIMA 3WU4A 1Y60A 2F4VE 2CGEA 4DR6I 2X36A 1VISA 3PRYA 4JI2E 2UXBE 4ED4A 2V34A 4X62I 5FWKA 1HK7A 1UDSA 4JI4E 2BA1G 4M1KA 1R6LA 4X66I 2BA0G 4LF6I 3F0NA 2HKEA 5C0XB 4JV5I 2JEAA 3P3CA 1ZXNA 4DR3E 2BA1D 2XEXA 2CG9A 4DUYI 2Q2EB 2CVEA 2BA0D 2PO2A 2PO1A 2NN6D 5LMUI 4DV4I 1B63A 4AQYE 4NXNE 4JI5E 1H73A 5LMNE 3U1YA 4DR5E 1N0VC 3B82A 3Q1QA 4YY3I 2PO0A 4DPWA 1XNRE 2O3ZA 2GO3A 4USKA 1Y5YA 4B3SE 1NHJA 3J80C 4IFDC 3T1YI 4MU1A 2NN6F 3LTOA 4DV0I 4DV4E 4DR2E 5K36A 2R42A 2VQFI 4DUZI 1XMOE 1H7SA 3M7ND 4GQUA 2EFGA 3M85G 4MYUA 2ZM6E 2GQ0A 1FWKA 4YHHI 1N34E 4YY3E 1IBME 1XNQI 4OKGA 1FWLA 4KHPI 2LJPA 4LPFA 1FKAE 4FWHA 4JI7E
chains in the Genus database with same CATH topology
4GQUA 4MU3A 4QNJA 5DNLA 2AE8A 4MU1A 5EKWA 1RHYA 5DNXA 4LPFA 4LOMA 4MU0A 5ELWA 2F1DA 5EL9A 4MU4A 4QNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  4MU3 A;  4QNJ A;  5DNL A;  2AE8 A;  4MU1 A;  5EKW A;  1RHY A;  5DNX A;  4LPF A;  4LOM A;  4MU0 A;  5ELW A;  2F1D A;  5EL9 A;  4MU4 A;  4QNK A; 
#chains in the Genus database with same CATH topology
 4DV0 E;  3M85 D;  4DR1 I;  2VQF E;  1EA6 A;  4LFB E;  4DV2 I;  4FW7 A;  4RPF A;  5JEA D;  4OO1 A;  4LF8 E;  4HAC B;  4JI0 I;  1I94 E;  2HK2 A;  5EL9 A;  1Z0V A;  4LF7 E;  2NN6 E;  4DU7 A;  4GKK I;  4DV6 I;  3P76 A;  2HK3 A;  3PYG A;  1N0U A;  4PU9 A;  4IFD B;  1KTV A;  3QT8 A;  3QT6 A;  1PVG A;  1Y6Z A;  5C0X E;  5A2Q Q;  5JEA F;  3ZZT A;  3B4T A;  4BA2 B;  2C39 B;  1J5E E;  2BR2 A;  2DEI A;  2V2Q A;  1HNW I;  2NN6 C;  2A2D A;  4JYA I;  4HY1 A;  4DR7 I;  5IWA I;  2UUC I;  4X64 E;  4DR4 E;  4IZJ A;  2ZBK B;  2F4V I;  1H7U A;  4X65 E;  4R1F A;  1MG7 A;  5DNL A;  2JEB B;  1UDN A;  5GME A;  2NPF A;  1FJG E;  5K36 D;  1EI1 A;  4JI2 I;  1XMQ I;  2UXB I;  4HXZ A;  5JEA E;  4JI4 I;  3P3E A;  3J81 Q;  1A6F A;  1S4E A;  1OYS A;  2J65 A;  5A2Q C;  4I3H A;  3K85 A;  4IFD F;  1USU A;  4IZK B;  2ZIT A;  2UU9 E;  2WNR B;  1ZM2 A;  3CDI A;  3HKM A;  2A2C A;  4B3M E;  1RR9 A;  3L7Z B;  1E3P A;  1Z5C A;  1XMQ E;  2R3V A;  2C37 A;  4DV3 E;  5IT9 Q;  2NN6 B;  4DR3 I;  3P3G A;  4OO1 D;  2IES A;  2VF3 A;  2Z5B B;  4B3T E;  5JEA C;  4QNJ A;  4AQY I;  4PRV A;  4LFA E;  4NXN I;  4JI5 I;  4JG4 A;  5LMN I;  1HR0 E;  4DR5 I;  4DV5 E;  4BA1 A;  4Z7C A;  4DPT A;  2UUB E;  1ZM3 A;  2OI2 A;  1XNR I;  4OO1 F;  3J81 C;  3QT5 A;  4IFD E;  2J7K A;  4B3S I;  1NHI A;  1USV A;  1Z0E A;  2Z5C B;  4DR2 I;  1XMO I;  1HNZ E;  1P42 A;  3ZZU A;  4OX9 E;  2ZM6 I;  4IZJ D;  1B62 A;  2E5L E;  1R6M A;  1N34 I;  1IBM I;  1KVK A;  2JT2 A;  1H74 A;  1Z5A A;  4IS9 A;  2DEJ A;  4U3B A;  3Q6M A;  5JEA B;  4JI7 I;  4JI8 E;  1OJ4 A;  1S16 A;  1UDO A;  2PNZ A;  5DRO A;  3CDJ A;  3Q6N A;  4LFB I;  4NXM E;  1N32 E;  1YHC A;  4B3R E;  2O1W A;  4LF8 I;  3HUL A;  2JEA B;  1I94 I;  1PKP A;  1ELO A;  1NHH A;  1RRE A;  3HJC A;  4LF7 I;  1IBK E;  1Z0G A;  2IOQ A;  4LOM A;  3GLL A;  3V2U C;  1YH8 A;  2PO2 B;  1RHY A;  2V8P A;  2PO1 B;  2CZ9 A;  3P06 A;  1FNM A;  1VI7 A;  2AJ4 A;  1Z59 A;  4N3O A;  4OO1 C;  2PO0 B;  4JI6 E;  1J5E I;  2F1D A;  1HNX E;  4DU8 A;  3B78 A;  5DRR A;  4X64 I;  4DR4 I;  4LF5 I;  3PYE A;  4WUB A;  2JE6 B;  2C38 A;  2WW4 A;  4QNK A;  4X65 I;  3PS2 A;  2IOP A;  1XXE A;  3DD6 A;  1FJG I;  2BV3 A;  4USM A;  4DV7 I;  1IBL I;  1N33 I;  4LFC E;  1UDQ A;  2HKJ A;  4JI3 I;  4LF5 E;  3GCM A;  2HHH I;  4MDT A;  1Y4S A;  3U1K A;  3ZM7 A;  2UU9 I;  3NZK A;  4B3M I;  4OO1 B;  3CWV A;  4MYT A;  3ZKB A;  4MU4 A;  5FLX Q;  5DRQ A;  3L7Z A;  3QT7 A;  4DV3 I;  2GO4 A;  3B8H A;  4LCH A;  4DV7 E;  4LF4 E;  1IBL E;  1N33 E;  3WU6 A;  1N36 E;  2NN6 A;  4JI3 E;  1Z0T A;  2WP8 B;  2HHH E;  1MU5 A;  4B3T I;  4DV1 I;  4HYM A;  1Z5B A;  4LF9 E;  2Z5B A;  5LL6 R;  4LFA I;  3LNU A;  5K36 F;  1HR0 I;  4K0K E;  4DV5 I;  5C0X A;  4FW3 A;  4WUD A;  4FW5 A;  2UUB I;  2BR2 B;  2O1U A;  1DAR A;  4FW6 A;  4OZE A;  3LPS A;  4IZJ B;  3T1H I;  4DV1 E;  4UT4 A;  4U3D A;  5ELW A;  4AID A;  1QZR A;  1HNZ I;  2Z5C A;  4OX9 I;  3JAM Q;  5FLX C;  2E5L I;  4FW4 A;  5BR8 I;  3K17 A;  4Z7Y A;  3ZZ0 A;  2UXD E;  4FN5 A;  3PYD A;  3T1H E;  5K36 E;  4GKJ E;  4JI8 I;  4EMD A;  1OYR A;  5JEA A;  3J80 Q;  3M6A A;  3J7A G;  4LCG A;  4LCF A;  4NXM I;  1Z0W A;  4DR6 E;  1BKN A;  4URL A;  1N32 I;  4B3R I;  5IT9 C;  2X7I A;  5BR8 E;  2C37 B;  4DPU A;  1IBK I;  1E3H A;  4XTJ A;  4X62 E;  2PNL A;  1UEK A;  4DXL A;  4JI1 I;  5K36 C;  3JAM C;  4UTG A;  1Z0B A;  4OO1 E;  1WUU A;  4X66 E;  4LF6 E;  1FI4 A;  2O1T A;  4BA1 B;  3GON A;  1MX0 A;  4JV5 E;  4JI6 I;  2Z5E A;  3GME A;  5L3J A;  4HAC A;  3M7N G;  4FW9 A;  1HNX I;  5C0X D;  1Z0C A;  3PS1 A;  4DUY E;  4IFD A;  4JI1 E;  4WUC A;  2VQE I;  5LMU E;  4MQY A;  3OTO I;  4DPY A;  1ZM4 A;  2O1V A;  4P7A A;  2JE6 A;  5GMD A;  1D6T A;  4MU3 A;  1KKH A;  2BM1 A;  4AM3 A;  4BA2 A;  5C0X F;  2HFU A;  2C39 A;  4LFC I;  3V5R A;  3H4L A;  5K36 B;  3WU5 A;  2VQE E;  2VES A;  3T1Y E;  4FWD A;  3OTO E;  1PIE A;  2GS8 A;  4DUZ E;  4J3D A;  4MU0 A;  3K1J A;  4ZVI A;  3WU3 A;  4YHH E;  2UUA I;  1XNQ E;  2HFS A;  2JEB A;  4KHP E;  3KRN A;  4LF4 I;  1XHK A;  3ZKD A;  1K47 A;  1N36 I;  3UHM A;  1OYP A;  4DR1 E;  2BM0 A;  2WP8 A;  4NBQ A;  4LF9 I;  3PS3 A;  2V2V A;  3PYF A;  5EKW A;  4DV2 E;  4PRX A;  1ZXM A;  4IZK A;  2PNZ B;  1KIJ A;  4K0K I;  2WNR A;  2UUA E;  4JI0 E;  2AE8 A;  1Y4U A;  4GKK E;  4DV6 E;  1U2R A;  1H72 C;  4KQV A;  2C38 B;  5DRP A;  2UXC I;  3H1C A;  2IER A;  4IFD D;  4FWG A;  4DPX A;  5C0X C;  2UXD I;  2V2Z A;  5DNX A;  4ISA A;  1HNW E;  4JYA E;  4P52 A;  3D4J A;  4DR7 E;  4GKJ I;  2PNM A;  5IWA E;  2UUC E;  1NZ0 A;  2UXC E;  1ZM9 A;  3J7A M;  2E1R A;  4AIM A;  3WU4 A;  1Y60 A;  2F4V E;  2CGE A;  4DR6 I;  2X36 A;  1VIS A;  3PRY A;  4JI2 E;  2UXB E;  4ED4 A;  2V34 A;  4X62 I;  5FWK A;  1HK7 A;  1UDS A;  4JI4 E;  2BA1 G;  4M1K A;  1R6L A;  4X66 I;  2BA0 G;  4LF6 I;  3F0N A;  2HKE A;  5C0X B;  4JV5 I;  2JEA A;  3P3C A;  1ZXN A;  4DR3 E;  2BA1 D;  2XEX A;  2CG9 A;  4DUY I;  2Q2E B;  2CVE A;  2BA0 D;  2PO2 A;  2PO1 A;  2NN6 D;  5LMU I;  4DV4 I;  1B63 A;  4AQY E;  4NXN E;  4JI5 E;  1H73 A;  5LMN E;  3U1Y A;  4DR5 E;  1N0V C;  3B82 A;  3Q1Q A;  4YY3 I;  2PO0 A;  4DPW A;  1XNR E;  2O3Z A;  2GO3 A;  4USK A;  1Y5Y A;  4B3S E;  1NHJ A;  3J80 C;  4IFD C;  3T1Y I;  4MU1 A;  2NN6 F;  3LTO A;  4DV0 I;  4DV4 E;  4DR2 E;  5K36 A;  2R42 A;  2VQF I;  4DUZ I;  1XMO E;  1H7S A;  3M7N D;  4GQU A;  2EFG A;  3M85 G;  4MYU A;  2ZM6 E;  2GQ0 A;  1FWK A;  4YHH I;  1N34 E;  4YY3 E;  1IBM E;  1XNQ I;  4OKG A;  1FWL A;  4KHP I;  2LJP A;  4LPF A;  1FKA E;  4FWH A;  4JI7 E; 
#chains in the Genus database with same CATH homology
 4GQU A;  4MU3 A;  4QNJ A;  5DNL A;  2AE8 A;  4MU1 A;  5EKW A;  1RHY A;  5DNX A;  4LPF A;  4LOM A;  4MU0 A;  5ELW A;  2F1D A;  5EL9 A;  4MU4 A;  4QNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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