4MU0A

The structure of wt a. thaliana igpd2 in complex with mn2+ and 1,2,4-triazole at 1.3 a resolution
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
185
structure length
185
Chain Sequence
b'SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 58
structure length 185
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A02
4QNKA 4LPFA 2F1DA 5DNLA 5DNXA 4MU0A 4LOMA 2AE8A 4GQUA 5EKWA 5ELWA 5EL9A 4MU1A 4MU4A 1RHYA 4MU3A 4QNJA
chains in the Genus database with same CATH superfamily
4K0KI 4OO1F 2Z5BA 1R6MA 3K1JA 1USVA 1XMOI 1EA6A 1Z5BA 1Y5YA 4LFAI 2V2VA 1OYRA 2UUBI 3P3GA 2NN6A 2JEBA 3HKMA 4P52A 5C0XC 3ZZ0A 5K36C 4JI8I 4LF7E 4DV4E 4OO1B 4LCGA 1H7UA 2Q2EB 3K17A 2UXBE 3J81Q 2IOPA 4ED4A 3M7ND 4KHPE 3PS2A 1FWKA 1Y6ZA 4B3MI 4JI4I 4LPFA 3T1YE 3PYGA 4BA2B 4DR4I 4LF8I 3J80C 4R1FA 3H4LA 1Z5CA 4JI1E 2F1DA 3QT8A 4DV5E 2JE6B 5A2QC 5DRRA 4OO1A 4UTGA 3WU4A 4BA1B 1HNZE 2F4VE 5JEAD 2IERA 4LCHA 1NHIA 2A2DA 1HNXI 2C37B 5JEAE 5LMUE 2WNRB 2XEXA 3JAMQ 2Z5CB 1NHHA 3M7NG 4IZJB 3J7AG 4LF7I 4DV4I 3ZM7A 2CZ9A 1DARA 4OX9I 4FW9A 4URLA 4BA2A 5IT9Q 2UU9E 2ZBKB 1XNRE 3B82A 4JYAE 1UDOA 2O1TA 2ZITA 1YHCA 4KHPI 4DV0E 2JE6A 2BV3A 4DR7I 4HY1A 2PNLA 2UXCI 3GCMA 4MU0A 4BA1A 5C0XF 5K36F 5EL9A 2C37A 1H72C 3HULA 4M1KA 2WNRA 3P06A 1N34E 4JI1I 3CWVA 4XTJA 2Z5CA 2UUAE 4HACB 5FLXQ 1NHJA 4B3TE 4EMDA 1IBMI 4IZJA 1H73A 1Z0GA 1HNZI 4JI3E 4X66E 4JG4A 5DROA 5C0XB 5LMUI 5K36B 1HNWI 1Z0TA 4U3BA 3K85A 2IESA 4IS9A 4LF4E 1PVGA 2NN6F 4MYTA 3OTOE 4B3RI 2UUCE 2O3ZA 2UU9I 3PYEA 1XNRI 2Z5BB 5IWAE 4X64E 2JEAB 4JYAI 4HACA 3KRNA 2VQFI 4DV0I 2HK2A 4U3DA 3WU5A 2HFUA 1Z0WA 5C0XA 4OO1E 5GMEA 1N34I 5K36A 3V5RA 4AQYI 2UXDE 4FW4A 2UUAI 5DRPA 2O1WA 3PYFA 4JI0I 4FW7A 2CGEA 4B3SE 2VQEI 5DNLA 2BA1G 4IFDC 4X66I 2HFSA 2JEAA 3Q1QA 1ZXMA 3P3CA 4LF5E 4RPFA 2JT2A 2Z5EA 4DV7E 4HXZA 4LF4I 3OTOI 1Z0CA 3M85D 1Z5AA 1U2RA 1VISA 4DUZE 4JI5E 2UUCI 2VESA 1EI1A 4AM3A 4X64I 1K47A 4NXNE 1HR0E 3QT7A 2O1UA 3GLLA 3H1CA 1S4EA 5JEAC 4DR1E 2PNZB 4DV2I 4JI2E 1N32E 4NBQA 3U1YA 1NZ0A 2GO3A 4FWDA 3PYDA 4LCFA 5L3JA 5BR8E 3ZZTA 4B3SI 3DD6A 3M85G 4DR5E 1ZM3A 4MU3A 4DV3E 4LF5I 1KIJA 5EKWA 1QZRA 3CDIA 1IBLE 1N0VC 3J80Q 4DV7I 4OKGA 1E3HA 3QT5A 1UDSA 5A2QQ 2NPFA 2BA0D 4DUZI 3P3EA 1J5EE 3PS3A 4JI5I 2PNZA 3CDJA 4IFDF 5C0XD 4NXME 3ZKDA 4NXNI 3ZKBA 2V2QA 2V8PA 5C0XE 1HR0I 5K36E 2UXBI 4DUYE 4GQUA 4KQVA 4DPXA 4AIMA 4DR1I 4JI7E 1Z59A 4DU7A 4JI2I 1N32I 2CG9A 2R42A 3T1YI 4IFDB 4AIDA 3GONA 4J3DA 4DV1E 1Z0EA 2HKJA 1XMQE 5DRQA 4DV5I 4DR5I 5DNXA 3T1HE 1IBKE 2WW4A 2NN6D 4DV3I 1KVKA 2F4VI 2NN6E 1IBLI 2ZM6E 3F0NA 4YY3E 3ZZUA 1Z0BA 4DPWA 1J5EI 1VI7A 4DR6E 4DR2E 3LPSA 1H7SA 1Y4UA 5LMNE 3L7ZB 2A2CA 4IFDA 1MX0A 2AJ4A 4FW5A 2VF3A 1FWLA 2BM1A 4DUYI 1YH8A 2BR2B 4K0KE 1USUA 1XHKA 2R3VA 4OO1D 4FWHA 1KKHA 4YHHE 4DV1I 1R6LA 1MU5A 4MYUA 4B3TI 1IBKI 4DV6E 2PNMA 3L7ZA 2E5LE 4JI8E 5JEAA 4JI6E 4JI3I 3NZKA 5FWKA 4FW3A 4YY3I 2ZM6I 4PU9A 1N36E 2BR2A 2PO2B 2GS8A 4DR6I 2CVEA 2J7KA 3P76A 4B3ME 1OYPA 5LMNI 4GKKE 3HJCA 4LFBE 4WUDA 3LNUA 5IWAI 1H74A 4WUCA 4FW6A 2IOQA 4N3OA 2V2ZA 4IZJD 1ZM2A 1PIEA 1I94E 5GMDA 4ISAA 1HNXE 4YHHI 3PS1A 1PKPA 2UXDI 1Y4SA 4LFCE 4DPYA 2PO2A 2HKEA 3J81C 4DV6I 1RR9A 1ZM4A 4LOMA 2E5LI 4LF9E 2C38B 3LTOA 4JI6I 1N33E 4IFDD 4OX9E 1RREA 1N0UA 1N36I 4X65E 4IFDE 4WUBA 1MG7A 2HHHE 4Z7YA 1E3PA 3QT6A 4DR7E 2PO1B 2UXCE 3Q6MA 4PRXA 4GKKI 4MQYA 4LF6E 4LFBI 4USMA 5K36D 1S16A 4DXLA 3J7AM 4GKJE 3JAMC 1IBME 2NN6C 2LJPA 2GQ0A 2C38A 1FJGE 3PRYA 1I94I 4DPTA 1UDNA 1ZXNA 5IT9C 4LFCI 1HNWE 2J65A 2X7IA 1OJ4A 4OZEA 1A6FA 1XNQE 3WU6A 2PO1A 4DU8A 5BR8I 4LF9I 1UDQA 1ELOA 1N33I 1Y60A 4B3RE 2DEJA 1XXEA 5JEAF 2V34A 2BA0G 4FWGA 4X65I 1Z0VA 1BKNA 2VQFE 2HHHI 5FLXC 3B4TA 3B78A 4PRVA 4JV5E 2PO0B 4OO1C 2WP8B 3WU3A 4LF6I 1B63A 4MDTA 3U1KA 4HYMA 5ELWA 1RHYA 4NXMI 4AQYE 2C39B 4X62E 2EFGA 1B62A 3Q6NA 5JEAB 3UHMA 4GKJI 4DR3E 4JI0E 1D6TA 2X36A 4P7AA 1FJGI 2VQEE 1KTVA 1WUUA 2O1VA 4JI7I 4UT4A 4ZVIA 3B8HA 2DEIA 4QNKA 1XMOE 4IZKB 1OYSA 2BM0A 1FNMA 4LFAE 4MU1A 1XNQI 4USKA 1XMQI 2PO0A 2BA1D 1FKAE 1ZM9A 2UUBE 1UEKA 2WP8A 3T1HI 2C39A 2AE8A 2E1RA 4FN5A 4I3HA 2GO4A 1HK7A 4JV5I 3GMEA 4DPUA 4MU4A 2NN6B 4DR2I 1FI4A 2JEBB 4DV2E 4IZKA 4X62I 4Z7CA 4JI4E 2OI2A 4QNJA 1P42A 3M6AA 4DR4E 4DR3I 4LF8E 3V2UC 2HK3A 5LL6R 3D4JA
chains in the Genus database with same CATH topology
4QNKA 4LPFA 2F1DA 5DNLA 5DNXA 4MU0A 4LOMA 2AE8A 4GQUA 5EKWA 5ELWA 5EL9A 4MU1A 4MU4A 1RHYA 4MU3A 4QNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNK A;  4LPF A;  2F1D A;  5DNL A;  5DNX A;  4MU0 A;  4LOM A;  2AE8 A;  4GQU A;  5EKW A;  5ELW A;  5EL9 A;  4MU1 A;  4MU4 A;  1RHY A;  4MU3 A;  4QNJ A; 
#chains in the Genus database with same CATH topology
 4K0K I;  4OO1 F;  2Z5B A;  1R6M A;  3K1J A;  1USV A;  1XMO I;  1EA6 A;  1Z5B A;  1Y5Y A;  4LFA I;  2V2V A;  1OYR A;  2UUB I;  3P3G A;  2NN6 A;  2JEB A;  3HKM A;  4P52 A;  5C0X C;  3ZZ0 A;  5K36 C;  4JI8 I;  4LF7 E;  4DV4 E;  4OO1 B;  4LCG A;  1H7U A;  2Q2E B;  3K17 A;  2UXB E;  3J81 Q;  2IOP A;  4ED4 A;  3M7N D;  4KHP E;  3PS2 A;  1FWK A;  1Y6Z A;  4B3M I;  4JI4 I;  4LPF A;  3T1Y E;  3PYG A;  4BA2 B;  4DR4 I;  4LF8 I;  3J80 C;  4R1F A;  3H4L A;  1Z5C A;  4JI1 E;  2F1D A;  3QT8 A;  4DV5 E;  2JE6 B;  5A2Q C;  5DRR A;  4OO1 A;  4UTG A;  3WU4 A;  4BA1 B;  1HNZ E;  2F4V E;  5JEA D;  2IER A;  4LCH A;  1NHI A;  2A2D A;  1HNX I;  2C37 B;  5JEA E;  5LMU E;  2WNR B;  2XEX A;  3JAM Q;  2Z5C B;  1NHH A;  3M7N G;  4IZJ B;  3J7A G;  4LF7 I;  4DV4 I;  3ZM7 A;  2CZ9 A;  1DAR A;  4OX9 I;  4FW9 A;  4URL A;  4BA2 A;  5IT9 Q;  2UU9 E;  2ZBK B;  1XNR E;  3B82 A;  4JYA E;  1UDO A;  2O1T A;  2ZIT A;  1YHC A;  4KHP I;  4DV0 E;  2JE6 A;  2BV3 A;  4DR7 I;  4HY1 A;  2PNL A;  2UXC I;  3GCM A;  4MU0 A;  4BA1 A;  5C0X F;  5K36 F;  5EL9 A;  2C37 A;  1H72 C;  3HUL A;  4M1K A;  2WNR A;  3P06 A;  1N34 E;  4JI1 I;  3CWV A;  4XTJ A;  2Z5C A;  2UUA E;  4HAC B;  5FLX Q;  1NHJ A;  4B3T E;  4EMD A;  1IBM I;  4IZJ A;  1H73 A;  1Z0G A;  1HNZ I;  4JI3 E;  4X66 E;  4JG4 A;  5DRO A;  5C0X B;  5LMU I;  5K36 B;  1HNW I;  1Z0T A;  4U3B A;  3K85 A;  2IES A;  4IS9 A;  4LF4 E;  1PVG A;  2NN6 F;  4MYT A;  3OTO E;  4B3R I;  2UUC E;  2O3Z A;  2UU9 I;  3PYE A;  1XNR I;  2Z5B B;  5IWA E;  4X64 E;  2JEA B;  4JYA I;  4HAC A;  3KRN A;  2VQF I;  4DV0 I;  2HK2 A;  4U3D A;  3WU5 A;  2HFU A;  1Z0W A;  5C0X A;  4OO1 E;  5GME A;  1N34 I;  5K36 A;  3V5R A;  4AQY I;  2UXD E;  4FW4 A;  2UUA I;  5DRP A;  2O1W A;  3PYF A;  4JI0 I;  4FW7 A;  2CGE A;  4B3S E;  2VQE I;  5DNL A;  2BA1 G;  4IFD C;  4X66 I;  2HFS A;  2JEA A;  3Q1Q A;  1ZXM A;  3P3C A;  4LF5 E;  4RPF A;  2JT2 A;  2Z5E A;  4DV7 E;  4HXZ A;  4LF4 I;  3OTO I;  1Z0C A;  3M85 D;  1Z5A A;  1U2R A;  1VIS A;  4DUZ E;  4JI5 E;  2UUC I;  2VES A;  1EI1 A;  4AM3 A;  4X64 I;  1K47 A;  4NXN E;  1HR0 E;  3QT7 A;  2O1U A;  3GLL A;  3H1C A;  1S4E A;  5JEA C;  4DR1 E;  2PNZ B;  4DV2 I;  4JI2 E;  1N32 E;  4NBQ A;  3U1Y A;  1NZ0 A;  2GO3 A;  4FWD A;  3PYD A;  4LCF A;  5L3J A;  5BR8 E;  3ZZT A;  4B3S I;  3DD6 A;  3M85 G;  4DR5 E;  1ZM3 A;  4MU3 A;  4DV3 E;  4LF5 I;  1KIJ A;  5EKW A;  1QZR A;  3CDI A;  1IBL E;  1N0V C;  3J80 Q;  4DV7 I;  4OKG A;  1E3H A;  3QT5 A;  1UDS A;  5A2Q Q;  2NPF A;  2BA0 D;  4DUZ I;  3P3E A;  1J5E E;  3PS3 A;  4JI5 I;  2PNZ A;  3CDJ A;  4IFD F;  5C0X D;  4NXM E;  3ZKD A;  4NXN I;  3ZKB A;  2V2Q A;  2V8P A;  5C0X E;  1HR0 I;  5K36 E;  2UXB I;  4DUY E;  4GQU A;  4KQV A;  4DPX A;  4AIM A;  4DR1 I;  4JI7 E;  1Z59 A;  4DU7 A;  4JI2 I;  1N32 I;  2CG9 A;  2R42 A;  3T1Y I;  4IFD B;  4AID A;  3GON A;  4J3D A;  4DV1 E;  1Z0E A;  2HKJ A;  1XMQ E;  5DRQ A;  4DV5 I;  4DR5 I;  5DNX A;  3T1H E;  1IBK E;  2WW4 A;  2NN6 D;  4DV3 I;  1KVK A;  2F4V I;  2NN6 E;  1IBL I;  2ZM6 E;  3F0N A;  4YY3 E;  3ZZU A;  1Z0B A;  4DPW A;  1J5E I;  1VI7 A;  4DR6 E;  4DR2 E;  3LPS A;  1H7S A;  1Y4U A;  5LMN E;  3L7Z B;  2A2C A;  4IFD A;  1MX0 A;  2AJ4 A;  4FW5 A;  2VF3 A;  1FWL A;  2BM1 A;  4DUY I;  1YH8 A;  2BR2 B;  4K0K E;  1USU A;  1XHK A;  2R3V A;  4OO1 D;  4FWH A;  1KKH A;  4YHH E;  4DV1 I;  1R6L A;  1MU5 A;  4MYU A;  4B3T I;  1IBK I;  4DV6 E;  2PNM A;  3L7Z A;  2E5L E;  4JI8 E;  5JEA A;  4JI6 E;  4JI3 I;  3NZK A;  5FWK A;  4FW3 A;  4YY3 I;  2ZM6 I;  4PU9 A;  1N36 E;  2BR2 A;  2PO2 B;  2GS8 A;  4DR6 I;  2CVE A;  2J7K A;  3P76 A;  4B3M E;  1OYP A;  5LMN I;  4GKK E;  3HJC A;  4LFB E;  4WUD A;  3LNU A;  5IWA I;  1H74 A;  4WUC A;  4FW6 A;  2IOQ A;  4N3O A;  2V2Z A;  4IZJ D;  1ZM2 A;  1PIE A;  1I94 E;  5GMD A;  4ISA A;  1HNX E;  4YHH I;  3PS1 A;  1PKP A;  2UXD I;  1Y4S A;  4LFC E;  4DPY A;  2PO2 A;  2HKE A;  3J81 C;  4DV6 I;  1RR9 A;  1ZM4 A;  4LOM A;  2E5L I;  4LF9 E;  2C38 B;  3LTO A;  4JI6 I;  1N33 E;  4IFD D;  4OX9 E;  1RRE A;  1N0U A;  1N36 I;  4X65 E;  4IFD E;  4WUB A;  1MG7 A;  2HHH E;  4Z7Y A;  1E3P A;  3QT6 A;  4DR7 E;  2PO1 B;  2UXC E;  3Q6M A;  4PRX A;  4GKK I;  4MQY A;  4LF6 E;  4LFB I;  4USM A;  5K36 D;  1S16 A;  4DXL A;  3J7A M;  4GKJ E;  3JAM C;  1IBM E;  2NN6 C;  2LJP A;  2GQ0 A;  2C38 A;  1FJG E;  3PRY A;  1I94 I;  4DPT A;  1UDN A;  1ZXN A;  5IT9 C;  4LFC I;  1HNW E;  2J65 A;  2X7I A;  1OJ4 A;  4OZE A;  1A6F A;  1XNQ E;  3WU6 A;  2PO1 A;  4DU8 A;  5BR8 I;  4LF9 I;  1UDQ A;  1ELO A;  1N33 I;  1Y60 A;  4B3R E;  2DEJ A;  1XXE A;  5JEA F;  2V34 A;  2BA0 G;  4FWG A;  4X65 I;  1Z0V A;  1BKN A;  2VQF E;  2HHH I;  5FLX C;  3B4T A;  3B78 A;  4PRV A;  4JV5 E;  2PO0 B;  4OO1 C;  2WP8 B;  3WU3 A;  4LF6 I;  1B63 A;  4MDT A;  3U1K A;  4HYM A;  5ELW A;  1RHY A;  4NXM I;  4AQY E;  2C39 B;  4X62 E;  2EFG A;  1B62 A;  3Q6N A;  5JEA B;  3UHM A;  4GKJ I;  4DR3 E;  4JI0 E;  1D6T A;  2X36 A;  4P7A A;  1FJG I;  2VQE E;  1KTV A;  1WUU A;  2O1V A;  4JI7 I;  4UT4 A;  4ZVI A;  3B8H A;  2DEI A;  4QNK A;  1XMO E;  4IZK B;  1OYS A;  2BM0 A;  1FNM A;  4LFA E;  4MU1 A;  1XNQ I;  4USK A;  1XMQ I;  2PO0 A;  2BA1 D;  1FKA E;  1ZM9 A;  2UUB E;  1UEK A;  2WP8 A;  3T1H I;  2C39 A;  2AE8 A;  2E1R A;  4FN5 A;  4I3H A;  2GO4 A;  1HK7 A;  4JV5 I;  3GME A;  4DPU A;  4MU4 A;  2NN6 B;  4DR2 I;  1FI4 A;  2JEB B;  4DV2 E;  4IZK A;  4X62 I;  4Z7C A;  4JI4 E;  2OI2 A;  4QNJ A;  1P42 A;  3M6A A;  4DR4 E;  4DR3 I;  4LF8 E;  3V2U C;  2HK3 A;  5LL6 R;  3D4J A; 
#chains in the Genus database with same CATH homology
 4QNK A;  4LPF A;  2F1D A;  5DNL A;  5DNX A;  4MU0 A;  4LOM A;  2AE8 A;  4GQU A;  5EKW A;  5ELW A;  5EL9 A;  4MU1 A;  4MU4 A;  1RHY A;  4MU3 A;  4QNJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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