1RHYA

Crystal structure of imidazole glycerol phosphate dehydratase
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
186
structure length
180
Chain Sequence
SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLTAEDCALALGEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGENNHHIAESAFKALALAIRMAISR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Filobasidiella neoformans
publication title Crystal structure of imidazole glycerol-phosphate dehydratase: duplication of an unusual fold
pubmed doi rcsb
molecule keywords Imidazole glycerol phosphate dehydratase
total genus 55
structure length 180
sequence length 186
chains with identical sequence B
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2003-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA02
4GQUA 5DNXA 2F1DA 4MU4A 4QNJA 5ELWA 5EL9A 4QNKA 5EKWA 5DNLA 4LPFA 4LOMA 2AE8A 4MU1A 1RHYA 4MU0A 4MU3A
chains in the Genus database with same CATH superfamily
2PO2B 3HJCA 4DV3I 1NHJA 4X62I 4Z7CA 3F0NA 5IT9Q 2PNMA 2X7IA 4DV7E 4JI0I 4DR3E 1KIJA 1XNQE 1E3HA 1UDOA 3J81C 4JYAE 2IESA 1Z0EA 4FWHA 4IZKB 4FW7A 5DROA 2CG9A 3P76A 2HKJA 4LF8E 1DARA 1OYPA 1ZM9A 2NN6E 2J65A 1N36E 3ZZ0A 3T1YE 4N3OA 4DU8A 1NZ0A 3CWVA 4LF4E 2UXBI 4MYUA 2VQFE 3HKMA 2UXCE 1MU5A 4MU1A 5K36E 2PNZA 4DR6I 4LCGA 2BM1A 4U3BA 3T1HI 4LF5I 4HYMA 4DR2I 4X64E 4BA2A 1Y4UA 4DR4E 4GKKI 1I94I 1OYSA 3D4JA 2UXDE 1N32E 4JI1I 2EFGA 4IFDE 4NBQA 3J7AM 4XTJA 4JI4I 4LFCE 3QT5A 4MQYA 4X65E 4X66I 4OO1D 4HY1A 1HNXI 1J5EE 4OO1B 2ZM6I 3U1KA 4DV2I 1ZXNA 2VF3A 2CGEA 4LF9E 4AQYE 2A2CA 5JEAE 1NHHA 2X36A 4KHPI 2PO1A 4FW3A 3PYGA 2WP8B 4IFDA 2F4VI 1XXEA 2ZBKB 5LMNI 5A2QC 4FW9A 2BR2B 4Z7YA 2VQEI 2NPFA 2GQ0A 3OTOI 2XEXA 4M1KA 2Z5CA 5EKWA 5DRPA 4DV6E 2GO3A 2JEBA 3P3GA 2OI2A 5IT9C 4JI3I 2V8PA 1N33E 3M85G 4BA1B 2UUAE 1K47A 3GLLA 4NXME 1IBLE 4YHHE 2V2VA 4WUDA 5C0XF 1PKPA 3V5RA 1FJGE 4HACA 4IS9A 5LMUI 4DV4E 4AM3A 2WW4A 1Y60A 1H7SA 2PNZB 3M6AA 4B3TE 4JI2E 2E5LE 1UDQA 1USVA 3L7ZA 4IZJA 5DNXA 4DPYA 1Y4SA 3QT6A 4DV0E 3K85A 3J80Q 2BA1D 4BA2B 4JV5E 4LF6I 4DUYI 1S4EA 4JI6I 4KQVA 4LFAE 1UDSA 1U2RA 1A6FA 3P06A 4QNJA 1N34I 1OJ4A 1FNMA 4DUZE 4LFBI 1B63A 2BA0D 2AJ4A 2NN6F 4LCFA 5IWAE 1Z0WA 4GKJI 1ELOA 5C0XA 1HK7A 4B3ME 5K36F 1FI4A 1R6LA 4UTGA 5DRQA 4DV5E 3LNUA 3B82A 2UU9E 2PO0A 4IFDD 4DR7E 4OO1C 1IBKI 4U3DA 4JI5I 4FW4A 5L3JA 2HFSA 2J7KA 2JE6A 1XNRI 2R3VA 3WU6A 4DXLA 4QNKA 2O3ZA 2UUBI 4EMDA 3PS3A 1XMQE 4IFDF 3LPSA 2HHHI 5BR8I 4LF7E 4OX9I 4YY3E 2UUCE 4B3SI 2O1WA 2Z5CB 4B3RE 4NXNI 4JI7E 1XMOE 4MU4A 2JEBB 2GS8A 4DPWA 3QT7A 4DV1I 1HR0I 2GO4A 1RHYA 3B78A 5JEAF 2NN6A 2HFUA 1PIEA 1HNWE 1YHCA 3M7ND 2O1UA 1E3PA 2LJPA 5FLXC 2HKEA 5K36A 4P7AA 4DR1I 4HACB 4DV3E 1IBMI 1HNZI 2C38A 1H74A 4ED4A 4AIMA 4GQUA 5EL9A 4X62E 2V2ZA 3P3EA 4JI0E 4DPTA 4K0KI 4IZJD 4LPFA 1FKAE 1PVGA 4MDTA 3J80C 1YH8A 4DR5I 3K1JA 4ZVIA 1N0VC 2UXBE 4FWGA 4DU7A 1Z0TA 1MG7A 2IERA 5JEAA 4DR6E 5DRRA 1Y5YA 4RPFA 3T1HE 4LF5E 1RREA 2NN6C 3PYFA 4DR2E 5C0XD 3JAMQ 4IZKA 5C0XB 4GKKE 4UT4A 1I94E 4JI1E 3J7AG 4J3DA 3ZM7A 2C37A 3HULA 4JI8I 4JI4E 2JE6B 1UDNA 4X66E 4OO1E 3PYDA 1HNXE 2ZM6E 4DV2E 4DV7I 4IFDC 4PU9A 3KRNA 3WU5A 4DR3I 2DEJA 1XNQI 4JYAI 4KHPE 4PRVA 4I3HA 5DNLA 2BA1G 4FWDA 1H7UA 2F4VE 1Z0CA 4JI8E 3WU4A 4LF8I 5LMNE 4LCHA 2NN6D 1FWKA 1H73A 4FN5A 4ISAA 1WUUA 2NN6B 3B8HA 2VQEE 1N36I 3T1YI 4MU0A 5JEAC 4LF4I 2VQFI 2UXCI 4OZEA 5K36D 3OTOE 2BA0G 5K36B 3Q1QA 2V34A 2C38B 2Q2EB 3K17A 4DPUA 2WP8A 4X64I 5LL6R 3QT8A 4DR4I 3P3CA 4JI3E 1MX0A 1R6MA 4LOMA 2UXDI 3PYEA 1N32I 1P42A 2O1TA 2PO1B 4FW5A 1VI7A 1B62A 3U1YA 2JEAA 4IFDB 1S16A 4DPXA 4LFCI 1ZM4A 3Q6NA 5LMUE 4X65I 1NHIA 1XHKA 1J5EI 3ZKBA 2BV3A 4LF9I 4AQYI 3Q6MA 3H1CA 5JEAD 4MYTA 5JEAB 3CDIA 1Z0VA 4BA1A 5GMEA 2AE8A 2Z5BA 4LF6E 3GCMA 3JAMC 1Z59A 4MU3A 3WU3A 4JG4A 4DUYE 4JI6E 2PNLA 1Z0BA 1ZXMA 1Z5AA 3M7NG 1Z0GA 2C37B 2IOPA 1N34E 1KKHA 3NZKA 1UEKA 5C0XC 4LFBE 4URLA 2C39A 4PRXA 4DV6I 4GKJE 1Z5CA 1RR9A 4AIDA 1N33I 1EA6A 2IOQA 2V2QA 3L7ZB 4IZJB 2UUAI 3ZZTA 2WNRA 4NXMI 3H4LA 1IBLI 1H72C 1QZRA 2PO2A 4YHHI 1FJGI 1IBKE 1BKNA 4JI5E 3PS2A 2F1DA 1XNRE 4DV4I 2UUBE 2R42A 3GMEA 2HHHE 5BR8E 3J81Q 4P52A 4OX9E 4B3TI 5FWKA 4JI2I 4B3SE 2E5LI 2JT2A 4NXNE 2ZITA 1D6TA 4DV0I 4OO1F 4JV5I 2A2DA 4DV1E 1HR0E 2CVEA 4USKA 1KTVA 5K36C 2VESA 4LFAI 2PO0B 2JEAB 4HXZA 1VISA 1ZM2A 2E1RA 4DUZI 5GMDA 3PS1A 4DR1E 1IBME 1HNZE 2HK3A 2CZ9A 3DD6A 2Z5EA 5IWAI 4B3MI 3ZZUA 4DV5I 4K0KE 2UU9I 3UHMA 3M85D 3B4TA 1N0UA 1Y6ZA 4DR7I 1FWLA 5FLXQ 2Z5BB 1USUA 4DR5E 1EI1A 4OO1A 3V2UC 4WUBA 1OYRA 3GONA 1XMQI 4LF7I 4R1FA 4YY3I 2UUCI 3ZKDA 3CDJA 3PRYA 2BM0A 2C39B 2DEIA 4B3RI 4JI7I 4FW6A 1XMOI 3LTOA 2HK2A 2O1VA 5C0XE 1KVKA 5A2QQ 4USMA 2BR2A 1ZM3A 5ELWA 1Z5BA 2WNRB 1HNWI 4WUCA 4OKGA
chains in the Genus database with same CATH topology
4GQUA 5DNXA 2F1DA 4MU4A 4QNJA 5ELWA 5EL9A 4QNKA 5EKWA 5DNLA 4LPFA 4LOMA 2AE8A 4MU1A 1RHYA 4MU0A 4MU3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  5DNX A;  2F1D A;  4MU4 A;  4QNJ A;  5ELW A;  5EL9 A;  4QNK A;  5EKW A;  5DNL A;  4LPF A;  4LOM A;  2AE8 A;  4MU1 A;  1RHY A;  4MU0 A;  4MU3 A; 
#chains in the Genus database with same CATH topology
 2PO2 B;  3HJC A;  4DV3 I;  1NHJ A;  4X62 I;  4Z7C A;  3F0N A;  5IT9 Q;  2PNM A;  2X7I A;  4DV7 E;  4JI0 I;  4DR3 E;  1KIJ A;  1XNQ E;  1E3H A;  1UDO A;  3J81 C;  4JYA E;  2IES A;  1Z0E A;  4FWH A;  4IZK B;  4FW7 A;  5DRO A;  2CG9 A;  3P76 A;  2HKJ A;  4LF8 E;  1DAR A;  1OYP A;  1ZM9 A;  2NN6 E;  2J65 A;  1N36 E;  3ZZ0 A;  3T1Y E;  4N3O A;  4DU8 A;  1NZ0 A;  3CWV A;  4LF4 E;  2UXB I;  4MYU A;  2VQF E;  3HKM A;  2UXC E;  1MU5 A;  4MU1 A;  5K36 E;  2PNZ A;  4DR6 I;  4LCG A;  2BM1 A;  4U3B A;  3T1H I;  4LF5 I;  4HYM A;  4DR2 I;  4X64 E;  4BA2 A;  1Y4U A;  4DR4 E;  4GKK I;  1I94 I;  1OYS A;  3D4J A;  2UXD E;  1N32 E;  4JI1 I;  2EFG A;  4IFD E;  4NBQ A;  3J7A M;  4XTJ A;  4JI4 I;  4LFC E;  3QT5 A;  4MQY A;  4X65 E;  4X66 I;  4OO1 D;  4HY1 A;  1HNX I;  1J5E E;  4OO1 B;  2ZM6 I;  3U1K A;  4DV2 I;  1ZXN A;  2VF3 A;  2CGE A;  4LF9 E;  4AQY E;  2A2C A;  5JEA E;  1NHH A;  2X36 A;  4KHP I;  2PO1 A;  4FW3 A;  3PYG A;  2WP8 B;  4IFD A;  2F4V I;  1XXE A;  2ZBK B;  5LMN I;  5A2Q C;  4FW9 A;  2BR2 B;  4Z7Y A;  2VQE I;  2NPF A;  2GQ0 A;  3OTO I;  2XEX A;  4M1K A;  2Z5C A;  5EKW A;  5DRP A;  4DV6 E;  2GO3 A;  2JEB A;  3P3G A;  2OI2 A;  5IT9 C;  4JI3 I;  2V8P A;  1N33 E;  3M85 G;  4BA1 B;  2UUA E;  1K47 A;  3GLL A;  4NXM E;  1IBL E;  4YHH E;  2V2V A;  4WUD A;  5C0X F;  1PKP A;  3V5R A;  1FJG E;  4HAC A;  4IS9 A;  5LMU I;  4DV4 E;  4AM3 A;  2WW4 A;  1Y60 A;  1H7S A;  2PNZ B;  3M6A A;  4B3T E;  4JI2 E;  2E5L E;  1UDQ A;  1USV A;  3L7Z A;  4IZJ A;  5DNX A;  4DPY A;  1Y4S A;  3QT6 A;  4DV0 E;  3K85 A;  3J80 Q;  2BA1 D;  4BA2 B;  4JV5 E;  4LF6 I;  4DUY I;  1S4E A;  4JI6 I;  4KQV A;  4LFA E;  1UDS A;  1U2R A;  1A6F A;  3P06 A;  4QNJ A;  1N34 I;  1OJ4 A;  1FNM A;  4DUZ E;  4LFB I;  1B63 A;  2BA0 D;  2AJ4 A;  2NN6 F;  4LCF A;  5IWA E;  1Z0W A;  4GKJ I;  1ELO A;  5C0X A;  1HK7 A;  4B3M E;  5K36 F;  1FI4 A;  1R6L A;  4UTG A;  5DRQ A;  4DV5 E;  3LNU A;  3B82 A;  2UU9 E;  2PO0 A;  4IFD D;  4DR7 E;  4OO1 C;  1IBK I;  4U3D A;  4JI5 I;  4FW4 A;  5L3J A;  2HFS A;  2J7K A;  2JE6 A;  1XNR I;  2R3V A;  3WU6 A;  4DXL A;  4QNK A;  2O3Z A;  2UUB I;  4EMD A;  3PS3 A;  1XMQ E;  4IFD F;  3LPS A;  2HHH I;  5BR8 I;  4LF7 E;  4OX9 I;  4YY3 E;  2UUC E;  4B3S I;  2O1W A;  2Z5C B;  4B3R E;  4NXN I;  4JI7 E;  1XMO E;  4MU4 A;  2JEB B;  2GS8 A;  4DPW A;  3QT7 A;  4DV1 I;  1HR0 I;  2GO4 A;  1RHY A;  3B78 A;  5JEA F;  2NN6 A;  2HFU A;  1PIE A;  1HNW E;  1YHC A;  3M7N D;  2O1U A;  1E3P A;  2LJP A;  5FLX C;  2HKE A;  5K36 A;  4P7A A;  4DR1 I;  4HAC B;  4DV3 E;  1IBM I;  1HNZ I;  2C38 A;  1H74 A;  4ED4 A;  4AIM A;  4GQU A;  5EL9 A;  4X62 E;  2V2Z A;  3P3E A;  4JI0 E;  4DPT A;  4K0K I;  4IZJ D;  4LPF A;  1FKA E;  1PVG A;  4MDT A;  3J80 C;  1YH8 A;  4DR5 I;  3K1J A;  4ZVI A;  1N0V C;  2UXB E;  4FWG A;  4DU7 A;  1Z0T A;  1MG7 A;  2IER A;  5JEA A;  4DR6 E;  5DRR A;  1Y5Y A;  4RPF A;  3T1H E;  4LF5 E;  1RRE A;  2NN6 C;  3PYF A;  4DR2 E;  5C0X D;  3JAM Q;  4IZK A;  5C0X B;  4GKK E;  4UT4 A;  1I94 E;  4JI1 E;  3J7A G;  4J3D A;  3ZM7 A;  2C37 A;  3HUL A;  4JI8 I;  4JI4 E;  2JE6 B;  1UDN A;  4X66 E;  4OO1 E;  3PYD A;  1HNX E;  2ZM6 E;  4DV2 E;  4DV7 I;  4IFD C;  4PU9 A;  3KRN A;  3WU5 A;  4DR3 I;  2DEJ A;  1XNQ I;  4JYA I;  4KHP E;  4PRV A;  4I3H A;  5DNL A;  2BA1 G;  4FWD A;  1H7U A;  2F4V E;  1Z0C A;  4JI8 E;  3WU4 A;  4LF8 I;  5LMN E;  4LCH A;  2NN6 D;  1FWK A;  1H73 A;  4FN5 A;  4ISA A;  1WUU A;  2NN6 B;  3B8H A;  2VQE E;  1N36 I;  3T1Y I;  4MU0 A;  5JEA C;  4LF4 I;  2VQF I;  2UXC I;  4OZE A;  5K36 D;  3OTO E;  2BA0 G;  5K36 B;  3Q1Q A;  2V34 A;  2C38 B;  2Q2E B;  3K17 A;  4DPU A;  2WP8 A;  4X64 I;  5LL6 R;  3QT8 A;  4DR4 I;  3P3C A;  4JI3 E;  1MX0 A;  1R6M A;  4LOM A;  2UXD I;  3PYE A;  1N32 I;  1P42 A;  2O1T A;  2PO1 B;  4FW5 A;  1VI7 A;  1B62 A;  3U1Y A;  2JEA A;  4IFD B;  1S16 A;  4DPX A;  4LFC I;  1ZM4 A;  3Q6N A;  5LMU E;  4X65 I;  1NHI A;  1XHK A;  1J5E I;  3ZKB A;  2BV3 A;  4LF9 I;  4AQY I;  3Q6M A;  3H1C A;  5JEA D;  4MYT A;  5JEA B;  3CDI A;  1Z0V A;  4BA1 A;  5GME A;  2AE8 A;  2Z5B A;  4LF6 E;  3GCM A;  3JAM C;  1Z59 A;  4MU3 A;  3WU3 A;  4JG4 A;  4DUY E;  4JI6 E;  2PNL A;  1Z0B A;  1ZXM A;  1Z5A A;  3M7N G;  1Z0G A;  2C37 B;  2IOP A;  1N34 E;  1KKH A;  3NZK A;  1UEK A;  5C0X C;  4LFB E;  4URL A;  2C39 A;  4PRX A;  4DV6 I;  4GKJ E;  1Z5C A;  1RR9 A;  4AID A;  1N33 I;  1EA6 A;  2IOQ A;  2V2Q A;  3L7Z B;  4IZJ B;  2UUA I;  3ZZT A;  2WNR A;  4NXM I;  3H4L A;  1IBL I;  1H72 C;  1QZR A;  2PO2 A;  4YHH I;  1FJG I;  1IBK E;  1BKN A;  4JI5 E;  3PS2 A;  2F1D A;  1XNR E;  4DV4 I;  2UUB E;  2R42 A;  3GME A;  2HHH E;  5BR8 E;  3J81 Q;  4P52 A;  4OX9 E;  4B3T I;  5FWK A;  4JI2 I;  4B3S E;  2E5L I;  2JT2 A;  4NXN E;  2ZIT A;  1D6T A;  4DV0 I;  4OO1 F;  4JV5 I;  2A2D A;  4DV1 E;  1HR0 E;  2CVE A;  4USK A;  1KTV A;  5K36 C;  2VES A;  4LFA I;  2PO0 B;  2JEA B;  4HXZ A;  1VIS A;  1ZM2 A;  2E1R A;  4DUZ I;  5GMD A;  3PS1 A;  4DR1 E;  1IBM E;  1HNZ E;  2HK3 A;  2CZ9 A;  3DD6 A;  2Z5E A;  5IWA I;  4B3M I;  3ZZU A;  4DV5 I;  4K0K E;  2UU9 I;  3UHM A;  3M85 D;  3B4T A;  1N0U A;  1Y6Z A;  4DR7 I;  1FWL A;  5FLX Q;  2Z5B B;  1USU A;  4DR5 E;  1EI1 A;  4OO1 A;  3V2U C;  4WUB A;  1OYR A;  3GON A;  1XMQ I;  4LF7 I;  4R1F A;  4YY3 I;  2UUC I;  3ZKD A;  3CDJ A;  3PRY A;  2BM0 A;  2C39 B;  2DEI A;  4B3R I;  4JI7 I;  4FW6 A;  1XMO I;  3LTO A;  2HK2 A;  2O1V A;  5C0X E;  1KVK A;  5A2Q Q;  4USM A;  2BR2 A;  1ZM3 A;  5ELW A;  1Z5B A;  2WNR B;  1HNW I;  4WUC A;  4OKG A; 
#chains in the Genus database with same CATH homology
 4GQU A;  5DNX A;  2F1D A;  4MU4 A;  4QNJ A;  5ELW A;  5EL9 A;  4QNK A;  5EKW A;  5DNL A;  4LPF A;  4LOM A;  2AE8 A;  4MU1 A;  1RHY A;  4MU0 A;  4MU3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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