1RHYA

Crystal structure of imidazole glycerol phosphate dehydratase
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
186
structure length
180
Chain Sequence
SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLTAEDCALALGEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGENNHHIAESAFKALALAIRMAISR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazole glycerol phosphate dehydratase
publication title Crystal structure of imidazole glycerol-phosphate dehydratase: duplication of an unusual fold
pubmed doi rcsb
source organism Filobasidiella neoformans
molecule tags Lyase
total genus 55
structure length 180
sequence length 186
chains with identical sequence B
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2003-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA02
4LOMA 1RHYA 4MU3A 4QNKA 4GQUA 2AE8A 4MU0A 4LPFA 4MU4A 5DNLA 4MU1A 4QNJA 5EL9A 5ELWA 5DNXA 2F1DA 5EKWA
chains in the Genus database with same CATH superfamily
1H7SA 2PO2A 2CG9A 2PNZA 2BM0A 2O1TA 2OI2A 3B8HA 4AM3A 4X64I 4DV4I 3NZKA 3F0NA 5DRRA 1R6MA 1USUA 4USMA 5IWAE 4OZEA 4OO1E 4JG4A 2VQFE 2HHHE 3M6AA 3K1JA 2UXDI 3ZZTA 5A2QQ 2V34A 4N3OA 1Z5AA 4MYUA 1UEKA 2ZBKB 1YH8A 4FW6A 4HY1A 4IFDC 2CZ9A 1Y60A 3T1HE 1XMOE 3CWVA 4LFCE 5IWAI 4IFDA 4B3MI 2AJ4A 2IOQA 4DUZI 3WU3A 2VQFI 2Z5BB 2UXCI 4ED4A 2HHHI 4KQVA 3UHMA 4ZVIA 4LFAE 4OO1D 3T1YE 4B3RE 5DNXA 3PYEA 2NN6F 4LFCI 1USVA 2JE6B 4LCHA 1IBLI 4MYTA 3M7NG 4DPUA 2O1UA 4YY3E 1KKHA 2E5LE 4LF4E 1N33I 1KVKA 1UDOA 2BM1A 1N0VC 4RPFA 2WNRB 5IT9Q 4DV0I 4R1FA 3JAMQ 5C0XC 3GCMA 1HNZE 5C0XA 4OO1B 4YY3I 1HR0I 4NXME 4LF4I 2F4VE 2O1VA 4Z7YA 2NPFA 2XEXA 4OO1C 2BA1G 2BA0D 1PVGA 4OO1A 2EFGA 4JI3E 5K36C 2UUAE 3Q6NA 1QZRA 5EKWA 1XNRE 3HULA 1XNQE 3QT8A 4JV5E 1OYPA 1R6LA 1Y6ZA 3PYDA 5JEAC 1NZ0A 2NN6E 1FI4A 3PS1A 1D6TA 2DEJA 2UUAI 2GO3A 1Z5CA 4DR5E 1XNQI 4JV5I 4DR4I 3J80C 1S16A 4MU3A 1N32E 1P42A 2Z5CA 3GONA 2VQEI 4JI5E 1EI1A 2GS8A 1Z0TA 2NN6D 4DV6E 4X62E 3HKMA 4DV5E 3ZKDA 3V5RA 4DR5I 2HKJA 4JYAE 4HYMA 4DPYA 4YHHE 1I94E 1Y4UA 1K47A 4AIDA 4JI8E 2UXBE 1N32I 3H4LA 3U1YA 1HK7A 4KHPI 5K36F 4AQYE 1UDNA 2PO0A 4JI7E 5FLXC 2WW4A 1ZXMA 4JYAI 1N34I 1Y4SA 3L7ZA 4DR1I 2UXBI 2NN6B 4QNJA 1RHYA 2PO2B 2PNZB 4AQYI 2NN6C 4IFDD 4JI2I 4DV4E 4EMDA 3QT7A 1HNXE 2NN6A 4NXNE 3J7AG 2UXDE 5C0XE 1VISA 1FWLA 4ISAA 5A2QC 4B3TI 1HNXI 1KIJA 3PS3A 1PIEA 1J5EI 4NXNI 4DPWA 1E3HA 4B3ME 4DPTA 4DUZE 1HNWI 4I3HA 2F1DA 3M85G 2UXCE 4IZKA 3WU4A 3PYGA 2R3VA 4IFDB 5K36E 2J65A 4GQUA 4DUYI 3H1CA 4MU4A 4PRXA 3V2UC 2ZM6E 1Z5BA 4X66E 4LF9I 5C0XD 3PRYA 1XMQE 1IBLE 1XHKA 5JEAE 1N33E 4LF6I 1MG7A 4DXLA 2ZM6I 1IBMI 3P3EA 4LF7E 4X66I 4DV0E 4DR3I 5K36D 1XMQI 4OX9I 1WUUA 1FJGI 5IT9C 2R42A 2JEBA 4LOMA 2V2VA 3JAMC 3P06A 1HR0E 3Q1QA 4LFBI 1S4EA 1Z0CA 2PNLA 5C0XB 5JEAD 3K17A 4WUBA 1UDQA 4LF7I 2PNMA 4JI6I 1EA6A 2C38A 1OYSA 3OTOE 5K36B 4FW7A 1OJ4A 2Q2EB 4FN5A 1IBKI 4X65E 5DROA 3B82A 2VESA 5L3JA 4FW5A 2PO1A 5K36A 3KRNA 5GMEA 5JEAB 2E1RA 4Z7CA 1Z0BA 3OTOI 4DR4E 4BA2B 2HK2A 4DR6I 4U3DA 4JI1E 1A6FA 4IZJA 4X65I 4DV2E 3GMEA 4XTJA 2VQEE 2LJPA 4DR7E 5JEAA 4WUDA 3P3CA 3CDJA 2Z5CB 4BA2A 4UT4A 4DR2E 4BA1B 2VF3A 1N0UA 4OKGA 1ZXNA 2AE8A 3ZZ0A 2HKEA 1YHCA 4JI1I 2X7IA 4DV2I 2IESA 3CDIA 5DRPA 4DR7I 4BA1A 5DRQA 4KHPE 4PRVA 4DR2I 2UU9I 2CVEA 2UUBE 4LCGA 1FWKA 1N34E 3ZKBA 2PO0B 4FWGA 4DR1E 4JI0E 4MQYA 3L7ZB 2C37A 1N36E 4B3SE 4JI2E 1PKPA 2UUBI 2C39A 2HFSA 4IS9A 2BA0G 4JI0I 4P7AA 1UDSA 1E3PA 2BR2A 1N36I 1FNMA 4B3SI 1H73A 4B3TE 4J3DA 4M1KA 1J5EE 3J81Q 4LF5I 3B4TA 1HNWE 2IOPA 4JI4E 4DUYE 1H72C 3M7ND 4IZKB 3U1KA 2Z5EA 4LF9E 5BR8I 4LCFA 3WU6A 4DV1E 4MDTA 4LF6E 4JI4I 1IBME 2O1WA 3QT6A 5FWKA 1Z0WA 4DR3E 1NHIA 3Q6MA 4OX9E 1FJGE 2V2ZA 1MX0A 2BA1D 4PU9A 2A2CA 1ZM2A 4DV1I 4LFBE 2JEBB 5LL6R 1DARA 2HFUA 4JI6E 2WP8B 1FKAE 1Z0GA 2IERA 4DU7A 4URLA 3ZZUA 1XXEA 1B62A 4IZJD 1Y5YA 2V8PA 2C38B 2WP8A 1IBKE 2GO4A 3J7AM 1KTVA 4AIMA 3QT5A 1MU5A 3P3GA 3LTOA 2JEAB 4K0KE 4LPFA 3ZM7A 4DPXA 2Z5BA 3T1HI 1XMOI 2PO1B 1OYRA 4DR6E 4QNKA 1H74A 1U2RA 4DV7E 3K85A 4U3BA 2JT2A 1BKNA 2JEAA 3B78A 4LFAI 1NHJA 4IZJB 3T1YI 4B3RI 2DEIA 2JE6A 4K0KI 5ELWA 4HXZA 4P52A 4FW3A 4DV7I 1ZM4A 2HK3A 2E5LI 2WNRA 4UTGA 1VI7A 4LF8E 3HJCA 1H7UA 2X36A 5LMNE 4GKJE 2UU9E 3GLLA 4USKA 4DV3E 4IFDF 1HNZI 1Z0EA 2CGEA 1ZM9A 3WU5A 4NXMI 3D4JA 2F4VI 4FW9A 1RREA 4LF8I 1NHHA 4MU1A 2ZITA 1Z0VA 5LMNI 4GKJI 3LNUA 4DV3I 4JI3I 2C37B 4GKKE 2O3ZA 1ELOA 2C39B 1XNRI 3P76A 4FW4A 1B63A 3LPSA 2GQ0A 3PYFA 2UUCE 3M85D 5LMUE 2BR2B 4GKKI 5DNLA 4LF5E 5C0XF 3DD6A 3J81C 3J80Q 4FWDA 4HACB 2V2QA 2UUCI 5LMUI 5BR8E 1RR9A 4IFDE 4JI5I 4OO1F 4FWHA 4MU0A 5GMDA 1Z59A 4DV6I 4X62I 4DV5I 4HACA 4WUCA 4DU8A 2A2DA 4YHHI 1I94I 4NBQA 4JI8I 5JEAF 5EL9A 2J7KA 5FLXQ 4X64E 3PS2A 1ZM3A 4JI7I 2BV3A
chains in the Genus database with same CATH topology
4LOMA 1RHYA 4MU3A 4QNKA 4GQUA 2AE8A 4MU0A 4LPFA 4MU4A 5DNLA 4MU1A 4QNJA 5EL9A 5ELWA 5DNXA 2F1DA 5EKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LOM A;  1RHY A;  4MU3 A;  4QNK A;  4GQU A;  2AE8 A;  4MU0 A;  4LPF A;  4MU4 A;  5DNL A;  4MU1 A;  4QNJ A;  5EL9 A;  5ELW A;  5DNX A;  2F1D A;  5EKW A; 
#chains in the Genus database with same CATH topology
 1H7S A;  2PO2 A;  2CG9 A;  2PNZ A;  2BM0 A;  2O1T A;  2OI2 A;  3B8H A;  4AM3 A;  4X64 I;  4DV4 I;  3NZK A;  3F0N A;  5DRR A;  1R6M A;  1USU A;  4USM A;  5IWA E;  4OZE A;  4OO1 E;  4JG4 A;  2VQF E;  2HHH E;  3M6A A;  3K1J A;  2UXD I;  3ZZT A;  5A2Q Q;  2V34 A;  4N3O A;  1Z5A A;  4MYU A;  1UEK A;  2ZBK B;  1YH8 A;  4FW6 A;  4HY1 A;  4IFD C;  2CZ9 A;  1Y60 A;  3T1H E;  1XMO E;  3CWV A;  4LFC E;  5IWA I;  4IFD A;  4B3M I;  2AJ4 A;  2IOQ A;  4DUZ I;  3WU3 A;  2VQF I;  2Z5B B;  2UXC I;  4ED4 A;  2HHH I;  4KQV A;  3UHM A;  4ZVI A;  4LFA E;  4OO1 D;  3T1Y E;  4B3R E;  5DNX A;  3PYE A;  2NN6 F;  4LFC I;  1USV A;  2JE6 B;  4LCH A;  1IBL I;  4MYT A;  3M7N G;  4DPU A;  2O1U A;  4YY3 E;  1KKH A;  2E5L E;  4LF4 E;  1N33 I;  1KVK A;  1UDO A;  2BM1 A;  1N0V C;  4RPF A;  2WNR B;  5IT9 Q;  4DV0 I;  4R1F A;  3JAM Q;  5C0X C;  3GCM A;  1HNZ E;  5C0X A;  4OO1 B;  4YY3 I;  1HR0 I;  4NXM E;  4LF4 I;  2F4V E;  2O1V A;  4Z7Y A;  2NPF A;  2XEX A;  4OO1 C;  2BA1 G;  2BA0 D;  1PVG A;  4OO1 A;  2EFG A;  4JI3 E;  5K36 C;  2UUA E;  3Q6N A;  1QZR A;  5EKW A;  1XNR E;  3HUL A;  1XNQ E;  3QT8 A;  4JV5 E;  1OYP A;  1R6L A;  1Y6Z A;  3PYD A;  5JEA C;  1NZ0 A;  2NN6 E;  1FI4 A;  3PS1 A;  1D6T A;  2DEJ A;  2UUA I;  2GO3 A;  1Z5C A;  4DR5 E;  1XNQ I;  4JV5 I;  4DR4 I;  3J80 C;  1S16 A;  4MU3 A;  1N32 E;  1P42 A;  2Z5C A;  3GON A;  2VQE I;  4JI5 E;  1EI1 A;  2GS8 A;  1Z0T A;  2NN6 D;  4DV6 E;  4X62 E;  3HKM A;  4DV5 E;  3ZKD A;  3V5R A;  4DR5 I;  2HKJ A;  4JYA E;  4HYM A;  4DPY A;  4YHH E;  1I94 E;  1Y4U A;  1K47 A;  4AID A;  4JI8 E;  2UXB E;  1N32 I;  3H4L A;  3U1Y A;  1HK7 A;  4KHP I;  5K36 F;  4AQY E;  1UDN A;  2PO0 A;  4JI7 E;  5FLX C;  2WW4 A;  1ZXM A;  4JYA I;  1N34 I;  1Y4S A;  3L7Z A;  4DR1 I;  2UXB I;  2NN6 B;  4QNJ A;  1RHY A;  2PO2 B;  2PNZ B;  4AQY I;  2NN6 C;  4IFD D;  4JI2 I;  4DV4 E;  4EMD A;  3QT7 A;  1HNX E;  2NN6 A;  4NXN E;  3J7A G;  2UXD E;  5C0X E;  1VIS A;  1FWL A;  4ISA A;  5A2Q C;  4B3T I;  1HNX I;  1KIJ A;  3PS3 A;  1PIE A;  1J5E I;  4NXN I;  4DPW A;  1E3H A;  4B3M E;  4DPT A;  4DUZ E;  1HNW I;  4I3H A;  2F1D A;  3M85 G;  2UXC E;  4IZK A;  3WU4 A;  3PYG A;  2R3V A;  4IFD B;  5K36 E;  2J65 A;  4GQU A;  4DUY I;  3H1C A;  4MU4 A;  4PRX A;  3V2U C;  2ZM6 E;  1Z5B A;  4X66 E;  4LF9 I;  5C0X D;  3PRY A;  1XMQ E;  1IBL E;  1XHK A;  5JEA E;  1N33 E;  4LF6 I;  1MG7 A;  4DXL A;  2ZM6 I;  1IBM I;  3P3E A;  4LF7 E;  4X66 I;  4DV0 E;  4DR3 I;  5K36 D;  1XMQ I;  4OX9 I;  1WUU A;  1FJG I;  5IT9 C;  2R42 A;  2JEB A;  4LOM A;  2V2V A;  3JAM C;  3P06 A;  1HR0 E;  3Q1Q A;  4LFB I;  1S4E A;  1Z0C A;  2PNL A;  5C0X B;  5JEA D;  3K17 A;  4WUB A;  1UDQ A;  4LF7 I;  2PNM A;  4JI6 I;  1EA6 A;  2C38 A;  1OYS A;  3OTO E;  5K36 B;  4FW7 A;  1OJ4 A;  2Q2E B;  4FN5 A;  1IBK I;  4X65 E;  5DRO A;  3B82 A;  2VES A;  5L3J A;  4FW5 A;  2PO1 A;  5K36 A;  3KRN A;  5GME A;  5JEA B;  2E1R A;  4Z7C A;  1Z0B A;  3OTO I;  4DR4 E;  4BA2 B;  2HK2 A;  4DR6 I;  4U3D A;  4JI1 E;  1A6F A;  4IZJ A;  4X65 I;  4DV2 E;  3GME A;  4XTJ A;  2VQE E;  2LJP A;  4DR7 E;  5JEA A;  4WUD A;  3P3C A;  3CDJ A;  2Z5C B;  4BA2 A;  4UT4 A;  4DR2 E;  4BA1 B;  2VF3 A;  1N0U A;  4OKG A;  1ZXN A;  2AE8 A;  3ZZ0 A;  2HKE A;  1YHC A;  4JI1 I;  2X7I A;  4DV2 I;  2IES A;  3CDI A;  5DRP A;  4DR7 I;  4BA1 A;  5DRQ A;  4KHP E;  4PRV A;  4DR2 I;  2UU9 I;  2CVE A;  2UUB E;  4LCG A;  1FWK A;  1N34 E;  3ZKB A;  2PO0 B;  4FWG A;  4DR1 E;  4JI0 E;  4MQY A;  3L7Z B;  2C37 A;  1N36 E;  4B3S E;  4JI2 E;  1PKP A;  2UUB I;  2C39 A;  2HFS A;  4IS9 A;  2BA0 G;  4JI0 I;  4P7A A;  1UDS A;  1E3P A;  2BR2 A;  1N36 I;  1FNM A;  4B3S I;  1H73 A;  4B3T E;  4J3D A;  4M1K A;  1J5E E;  3J81 Q;  4LF5 I;  3B4T A;  1HNW E;  2IOP A;  4JI4 E;  4DUY E;  1H72 C;  3M7N D;  4IZK B;  3U1K A;  2Z5E A;  4LF9 E;  5BR8 I;  4LCF A;  3WU6 A;  4DV1 E;  4MDT A;  4LF6 E;  4JI4 I;  1IBM E;  2O1W A;  3QT6 A;  5FWK A;  1Z0W A;  4DR3 E;  1NHI A;  3Q6M A;  4OX9 E;  1FJG E;  2V2Z A;  1MX0 A;  2BA1 D;  4PU9 A;  2A2C A;  1ZM2 A;  4DV1 I;  4LFB E;  2JEB B;  5LL6 R;  1DAR A;  2HFU A;  4JI6 E;  2WP8 B;  1FKA E;  1Z0G A;  2IER A;  4DU7 A;  4URL A;  3ZZU A;  1XXE A;  1B62 A;  4IZJ D;  1Y5Y A;  2V8P A;  2C38 B;  2WP8 A;  1IBK E;  2GO4 A;  3J7A M;  1KTV A;  4AIM A;  3QT5 A;  1MU5 A;  3P3G A;  3LTO A;  2JEA B;  4K0K E;  4LPF A;  3ZM7 A;  4DPX A;  2Z5B A;  3T1H I;  1XMO I;  2PO1 B;  1OYR A;  4DR6 E;  4QNK A;  1H74 A;  1U2R A;  4DV7 E;  3K85 A;  4U3B A;  2JT2 A;  1BKN A;  2JEA A;  3B78 A;  4LFA I;  1NHJ A;  4IZJ B;  3T1Y I;  4B3R I;  2DEI A;  2JE6 A;  4K0K I;  5ELW A;  4HXZ A;  4P52 A;  4FW3 A;  4DV7 I;  1ZM4 A;  2HK3 A;  2E5L I;  2WNR A;  4UTG A;  1VI7 A;  4LF8 E;  3HJC A;  1H7U A;  2X36 A;  5LMN E;  4GKJ E;  2UU9 E;  3GLL A;  4USK A;  4DV3 E;  4IFD F;  1HNZ I;  1Z0E A;  2CGE A;  1ZM9 A;  3WU5 A;  4NXM I;  3D4J A;  2F4V I;  4FW9 A;  1RRE A;  4LF8 I;  1NHH A;  4MU1 A;  2ZIT A;  1Z0V A;  5LMN I;  4GKJ I;  3LNU A;  4DV3 I;  4JI3 I;  2C37 B;  4GKK E;  2O3Z A;  1ELO A;  2C39 B;  1XNR I;  3P76 A;  4FW4 A;  1B63 A;  3LPS A;  2GQ0 A;  3PYF A;  2UUC E;  3M85 D;  5LMU E;  2BR2 B;  4GKK I;  5DNL A;  4LF5 E;  5C0X F;  3DD6 A;  3J81 C;  3J80 Q;  4FWD A;  4HAC B;  2V2Q A;  2UUC I;  5LMU I;  5BR8 E;  1RR9 A;  4IFD E;  4JI5 I;  4OO1 F;  4FWH A;  4MU0 A;  5GMD A;  1Z59 A;  4DV6 I;  4X62 I;  4DV5 I;  4HAC A;  4WUC A;  4DU8 A;  2A2D A;  4YHH I;  1I94 I;  4NBQ A;  4JI8 I;  5JEA F;  5EL9 A;  2J7K A;  5FLX Q;  4X64 E;  3PS2 A;  1ZM3 A;  4JI7 I;  2BV3 A; 
#chains in the Genus database with same CATH homology
 4LOM A;  1RHY A;  4MU3 A;  4QNK A;  4GQU A;  2AE8 A;  4MU0 A;  4LPF A;  4MU4 A;  5DNL A;  4MU1 A;  4QNJ A;  5EL9 A;  5ELW A;  5DNX A;  2F1D A;  5EKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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