1RHYA

Crystal structure of imidazole glycerol phosphate dehydratase
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
186
structure length
180
Chain Sequence
b'SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLTAEDCALALGEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGENNHHIAESAFKALALAIRMAISR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazole glycerol phosphate dehydratase
publication title Crystal structure of imidazole glycerol-phosphate dehydratase: duplication of an unusual fold
pubmed doi rcsb
source organism Filobasidiella neoformans
molecule tags Lyase
total genus 55
structure length 180
sequence length 186
chains with identical sequence B
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2003-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA02
4MU3A 4LOMA 2F1DA 4QNJA 4LPFA 5DNLA 5ELWA 2AE8A 4QNKA 4MU1A 4MU0A 5EL9A 5DNXA 5EKWA 4MU4A 1RHYA 4GQUA
chains in the Genus database with same CATH superfamily
2BA1D 4LF4I 4DPWA 1PIEA 2X7IA 4OX9I 4X65I 1HNXE 1N36I 1ZM9A 3ZM7A 3M6AA 5C0XF 4IFDD 4JI8I 2UXBI 2JE6B 4U3DA 4Z7YA 4JI0I 4YY3E 2C39A 4MU3A 5K36D 4JI7E 1Y5YA 4QNJA 4YHHE 2WW4A 4DV7I 4AIMA 2PO0B 3GMEA 4MDTA 4DR6I 1Y4SA 2HFSA 5JEAB 2WNRA 4DV2I 4JI5E 2UUBI 4DR7E 4K0KI 4DV0I 4IZJA 5FLXQ 1XNQI 4P7AA 5BR8E 3OTOE 2BA0G 1Z0CA 4MYUA 1HR0I 2UU9E 4EMDA 2NPFA 2V2ZA 1BKNA 3P06A 3GCMA 4NXMI 1E3PA 1H7SA 4KHPE 1RR9A 3M7ND 4DR3E 2VF3A 4B3SI 5C0XE 4DXLA 4HXZA 3M85G 2E1RA 3T1YI 4JV5E 4KQVA 4LPFA 5LMNI 4DV3E 5IT9C 4JI4I 3ZKDA 1OYPA 1Y6ZA 2V34A 2ZM6I 1KVKA 1EA6A 4GKJI 1H72C 3WU5A 5DRRA 1Z0WA 1YHCA 5IWAI 4MU1A 5LMUI 4MQYA 4FW5A 4ISAA 1U2RA 3KRNA 1HNWE 4R1FA 4LFAI 4B3MI 5C0XA 4LF4E 4LF9I 4X64I 3HULA 2O1VA 5JEAD 4X65E 1MX0A 3Q6MA 3J81Q 4B3RI 4WUBA 4DV1I 4AQYI 1R6MA 3QT6A 1XMOI 1KKHA 4WUDA 3K85A 2IERA 1PKPA 3DD6A 3CDIA 2E5LE 4JI0E 1KIJA 4JI1I 4U3BA 4DV7E 2J65A 4DR5I 4FWHA 3HJCA 2C39B 1ZM4A 3J81C 4DV6I 4DR4E 4B3TI 4OO1D 3B4TA 1UDSA 4DPYA 2O1UA 4FW6A 1NHJA 1QZRA 4K0KE 1RHYA 4DV0E 4LOMA 2CG9A 2WNRB 4LCFA 1IBKE 2R3VA 2CGEA 2GQ0A 2HHHI 1XMQE 2VESA 4IZJB 1HR0E 5C0XC 4NXNI 1MU5A 3LPSA 1Z0TA 2BM0A 1ZXMA 2UUAI 2C37A 2O3ZA 2V2VA 3P3GA 4DR2I 2BA0D 2GO4A 2V8PA 4JI6E 5DRQA 5GMEA 1IBMI 1EI1A 1PVGA 4LF6I 1Z0GA 2C38A 2XEXA 3ZZTA 2JEBA 5EL9A 5A2QC 5LMNE 2BR2A 1HK7A 3H1CA 1I94I 3J7AG 4DUZI 1S4EA 4LF8E 4DPTA 2ZM6E 3LNUA 4ZVIA 1UDOA 4FW7A 4GKJE 2Z5BA 2GO3A 2IOQA 2R42A 5JEAF 5LMUE 3PS2A 1FJGI 4DR1I 4LFAE 4B3ME 4FW9A 4X64E 2Z5CA 4X62I 4B3RE 2VQEE 4URLA 3J80Q 4DV1E 5C0XB 1Y60A 4GKKI 2UXDI 3GONA 1N32E 1Z0EA 1XNRE 3J7AM 5EKWA 3ZZUA 1ZM2A 1VI7A 2ZITA 1N33I 4JI1E 4IZJD 4JI2I 2UXCI 4OO1F 3P76A 5IT9Q 4FW4A 4DV6E 3PRYA 3Q1QA 2WP8A 3J80C 3WU6A 3U1YA 3QT7A 4LF7I 4I3HA 4IZKA 4DV4E 2X36A 3HKMA 3B8HA 2NN6F 2O1WA 3ZZ0A 2PNZB 1NHIA 5ELWA 2VQFI 4M1KA 3L7ZB 4N3OA 4NXNE 2V2QA 4LF5I 5JEAE 2UUAE 4WUCA 1RREA 4PRXA 4JYAI 1HNZE 1IBLI 2UUCI 2BV3A 1H7UA 1ZXNA 3QT8A 4NBQA 1IBME 2CZ9A 4IFDF 4LF6E 4OX9E 3PS1A 4X66I 1N36E 4HYMA 5K36F 2HKEA 5C0XD 2PO1A 4DUZE 2C38B 3NZKA 4JI8E 2UXBE 4OO1E 2PO0A 1Z0VA 2HK2A 2BR2B 1KTVA 1Z5CA 5JEAA 3JAMQ 4ED4A 3PYEA 3F0NA 1FJGE 2F1DA 2Z5BB 4DR1E 2IOPA 4USKA 2PO2A 4DR6E 4UT4A 4DR7I 4DV2E 2Z5EA 4LCGA 4X62E 1OYSA 1H74A 2UUBE 5BR8I 3OTOI 2HK3A 2NN6E 4AM3A 4GKKE 1XNQE 4PU9A 2Z5CB 5L3JA 4OO1A 3JAMC 2UU9I 2LJPA 2F4VI 2HFUA 4JI2E 2DEJA 5A2QQ 4NXME 4DR3I 4USMA 4Z7CA 2Q2EB 4LFCI 1FKAE 4IFDE 2A2CA 4FN5A 4LF7E 4B3SE 2DEIA 5K36E 2WP8B 2NN6A 4JV5I 1NHHA 5JEAC 3U1KA 1K47A 4JI3I 3T1YE 1S16A 2A2DA 3H4LA 1Z5AA 4JI4E 2PNMA 1Z59A 4IZKB 1YH8A 2VQFE 1USVA 5DNLA 4LFBI 4HY1A 4LF5E 3ZKBA 3M85D 1B63A 1N34I 3B78A 1XXEA 1OJ4A 4JYAE 2GS8A 5IWAE 3PYGA 4IFDA 4OO1C 1IBLE 2UUCE 2JEAA 1UDNA 4LF9E 5K36A 4P52A 3PS3A 4IS9A 4BA2A 4X66E 4DU7A 3Q6NA 4BA1A 1UEKA 4AQYE 4DUYI 2E5LI 1P42A 1XMOE 5FWKA 2CVEA 3P3CA 1MG7A 1D6TA 4HACA 2PO1B 4DV5I 1OYRA 3UHMA 4DR5E 2NN6C 4DR4I 2AE8A 4QNKA 3T1HI 2BM1A 1XHKA 4B3TE 3QT5A 1FWLA 5DRPA 2O1TA 4LCHA 4OZEA 1IBKI 2PO2B 2ZBKB 1UDQA 1XMQI 4JG4A 3K17A 2BA1G 2HHHE 2JT2A 2F4VE 4IFDC 5K36C 3CWVA 3K1JA 4DPUA 4GQUA 4OO1B 5FLXC 3PYFA 4JI6I 1J5EI 4DR2E 4LFCE 2PNLA 3P3EA 4DU8A 1DARA 1E3HA 1USUA 2C37B 2JE6A 1HNXI 4MU0A 4J3DA 3GLLA 3LTOA 3B82A 4FW3A 4JI3E 4OKGA 3V5RA 1FNMA 1I94E 4YY3I 2J7KA 4JI7I 2NN6B 4LF8I 4YHHI 2JEBB 1Z5BA 3WU3A 5DNXA 4MU4A 4LFBE 2EFGA 1N34E 1NZ0A 2HKJA 1ZM3A 1FWKA 4PRVA 4JI5I 2VQEI 4FWGA 1N0UA 4AIDA 4IFDB 1XNRI 1N32I 2JEAB 1FI4A 4UTGA 4DUYE 1A6FA 2UXDE 5K36B 3M7NG 1B62A 4BA2B 1N0VC 5DROA 1VISA 4BA1B 1N33E 2UXCE 2AJ4A 3CDJA 1ELOA 5LL6R 4DPXA 4DV5E 5GMDA 4FWDA 4KHPI 4XTJA 3V2UC 3T1HE 4HACB 4DV4I 2PNZA 3L7ZA 4DV3I 4RPFA 1R6LA 3WU4A 2OI2A 2NN6D 3D4JA 1Y4UA 4MYTA 1Z0BA 1HNZI 3PYDA 1H73A 1HNWI 1WUUA 1J5EE 2IESA
chains in the Genus database with same CATH topology
4MU3A 4LOMA 2F1DA 4QNJA 4LPFA 5DNLA 5ELWA 2AE8A 4QNKA 4MU1A 4MU0A 5EL9A 5DNXA 5EKWA 4MU4A 1RHYA 4GQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU3 A;  4LOM A;  2F1D A;  4QNJ A;  4LPF A;  5DNL A;  5ELW A;  2AE8 A;  4QNK A;  4MU1 A;  4MU0 A;  5EL9 A;  5DNX A;  5EKW A;  4MU4 A;  1RHY A;  4GQU A; 
#chains in the Genus database with same CATH topology
 2BA1 D;  4LF4 I;  4DPW A;  1PIE A;  2X7I A;  4OX9 I;  4X65 I;  1HNX E;  1N36 I;  1ZM9 A;  3ZM7 A;  3M6A A;  5C0X F;  4IFD D;  4JI8 I;  2UXB I;  2JE6 B;  4U3D A;  4Z7Y A;  4JI0 I;  4YY3 E;  2C39 A;  4MU3 A;  5K36 D;  4JI7 E;  1Y5Y A;  4QNJ A;  4YHH E;  2WW4 A;  4DV7 I;  4AIM A;  2PO0 B;  3GME A;  4MDT A;  4DR6 I;  1Y4S A;  2HFS A;  5JEA B;  2WNR A;  4DV2 I;  4JI5 E;  2UUB I;  4DR7 E;  4K0K I;  4DV0 I;  4IZJ A;  5FLX Q;  1XNQ I;  4P7A A;  5BR8 E;  3OTO E;  2BA0 G;  1Z0C A;  4MYU A;  1HR0 I;  2UU9 E;  4EMD A;  2NPF A;  2V2Z A;  1BKN A;  3P06 A;  3GCM A;  4NXM I;  1E3P A;  1H7S A;  4KHP E;  1RR9 A;  3M7N D;  4DR3 E;  2VF3 A;  4B3S I;  5C0X E;  4DXL A;  4HXZ A;  3M85 G;  2E1R A;  3T1Y I;  4JV5 E;  4KQV A;  4LPF A;  5LMN I;  4DV3 E;  5IT9 C;  4JI4 I;  3ZKD A;  1OYP A;  1Y6Z A;  2V34 A;  2ZM6 I;  1KVK A;  1EA6 A;  4GKJ I;  1H72 C;  3WU5 A;  5DRR A;  1Z0W A;  1YHC A;  5IWA I;  4MU1 A;  5LMU I;  4MQY A;  4FW5 A;  4ISA A;  1U2R A;  3KRN A;  1HNW E;  4R1F A;  4LFA I;  4B3M I;  5C0X A;  4LF4 E;  4LF9 I;  4X64 I;  3HUL A;  2O1V A;  5JEA D;  4X65 E;  1MX0 A;  3Q6M A;  3J81 Q;  4B3R I;  4WUB A;  4DV1 I;  4AQY I;  1R6M A;  3QT6 A;  1XMO I;  1KKH A;  4WUD A;  3K85 A;  2IER A;  1PKP A;  3DD6 A;  3CDI A;  2E5L E;  4JI0 E;  1KIJ A;  4JI1 I;  4U3B A;  4DV7 E;  2J65 A;  4DR5 I;  4FWH A;  3HJC A;  2C39 B;  1ZM4 A;  3J81 C;  4DV6 I;  4DR4 E;  4B3T I;  4OO1 D;  3B4T A;  1UDS A;  4DPY A;  2O1U A;  4FW6 A;  1NHJ A;  1QZR A;  4K0K E;  1RHY A;  4DV0 E;  4LOM A;  2CG9 A;  2WNR B;  4LCF A;  1IBK E;  2R3V A;  2CGE A;  2GQ0 A;  2HHH I;  1XMQ E;  2VES A;  4IZJ B;  1HR0 E;  5C0X C;  4NXN I;  1MU5 A;  3LPS A;  1Z0T A;  2BM0 A;  1ZXM A;  2UUA I;  2C37 A;  2O3Z A;  2V2V A;  3P3G A;  4DR2 I;  2BA0 D;  2GO4 A;  2V8P A;  4JI6 E;  5DRQ A;  5GME A;  1IBM I;  1EI1 A;  1PVG A;  4LF6 I;  1Z0G A;  2C38 A;  2XEX A;  3ZZT A;  2JEB A;  5EL9 A;  5A2Q C;  5LMN E;  2BR2 A;  1HK7 A;  3H1C A;  1I94 I;  3J7A G;  4DUZ I;  1S4E A;  4LF8 E;  4DPT A;  2ZM6 E;  3LNU A;  4ZVI A;  1UDO A;  4FW7 A;  4GKJ E;  2Z5B A;  2GO3 A;  2IOQ A;  2R42 A;  5JEA F;  5LMU E;  3PS2 A;  1FJG I;  4DR1 I;  4LFA E;  4B3M E;  4FW9 A;  4X64 E;  2Z5C A;  4X62 I;  4B3R E;  2VQE E;  4URL A;  3J80 Q;  4DV1 E;  5C0X B;  1Y60 A;  4GKK I;  2UXD I;  3GON A;  1N32 E;  1Z0E A;  1XNR E;  3J7A M;  5EKW A;  3ZZU A;  1ZM2 A;  1VI7 A;  2ZIT A;  1N33 I;  4JI1 E;  4IZJ D;  4JI2 I;  2UXC I;  4OO1 F;  3P76 A;  5IT9 Q;  4FW4 A;  4DV6 E;  3PRY A;  3Q1Q A;  2WP8 A;  3J80 C;  3WU6 A;  3U1Y A;  3QT7 A;  4LF7 I;  4I3H A;  4IZK A;  4DV4 E;  2X36 A;  3HKM A;  3B8H A;  2NN6 F;  2O1W A;  3ZZ0 A;  2PNZ B;  1NHI A;  5ELW A;  2VQF I;  4M1K A;  3L7Z B;  4N3O A;  4NXN E;  2V2Q A;  4LF5 I;  5JEA E;  2UUA E;  4WUC A;  1RRE A;  4PRX A;  4JYA I;  1HNZ E;  1IBL I;  2UUC I;  2BV3 A;  1H7U A;  1ZXN A;  3QT8 A;  4NBQ A;  1IBM E;  2CZ9 A;  4IFD F;  4LF6 E;  4OX9 E;  3PS1 A;  4X66 I;  1N36 E;  4HYM A;  5K36 F;  2HKE A;  5C0X D;  2PO1 A;  4DUZ E;  2C38 B;  3NZK A;  4JI8 E;  2UXB E;  4OO1 E;  2PO0 A;  1Z0V A;  2HK2 A;  2BR2 B;  1KTV A;  1Z5C A;  5JEA A;  3JAM Q;  4ED4 A;  3PYE A;  3F0N A;  1FJG E;  2F1D A;  2Z5B B;  4DR1 E;  2IOP A;  4USK A;  2PO2 A;  4DR6 E;  4UT4 A;  4DR7 I;  4DV2 E;  2Z5E A;  4LCG A;  4X62 E;  1OYS A;  1H74 A;  2UUB E;  5BR8 I;  3OTO I;  2HK3 A;  2NN6 E;  4AM3 A;  4GKK E;  1XNQ E;  4PU9 A;  2Z5C B;  5L3J A;  4OO1 A;  3JAM C;  2UU9 I;  2LJP A;  2F4V I;  2HFU A;  4JI2 E;  2DEJ A;  5A2Q Q;  4NXM E;  4DR3 I;  4USM A;  4Z7C A;  2Q2E B;  4LFC I;  1FKA E;  4IFD E;  2A2C A;  4FN5 A;  4LF7 E;  4B3S E;  2DEI A;  5K36 E;  2WP8 B;  2NN6 A;  4JV5 I;  1NHH A;  5JEA C;  3U1K A;  1K47 A;  4JI3 I;  3T1Y E;  1S16 A;  2A2D A;  3H4L A;  1Z5A A;  4JI4 E;  2PNM A;  1Z59 A;  4IZK B;  1YH8 A;  2VQF E;  1USV A;  5DNL A;  4LFB I;  4HY1 A;  4LF5 E;  3ZKB A;  3M85 D;  1B63 A;  1N34 I;  3B78 A;  1XXE A;  1OJ4 A;  4JYA E;  2GS8 A;  5IWA E;  3PYG A;  4IFD A;  4OO1 C;  1IBL E;  2UUC E;  2JEA A;  1UDN A;  4LF9 E;  5K36 A;  4P52 A;  3PS3 A;  4IS9 A;  4BA2 A;  4X66 E;  4DU7 A;  3Q6N A;  4BA1 A;  1UEK A;  4AQY E;  4DUY I;  2E5L I;  1P42 A;  1XMO E;  5FWK A;  2CVE A;  3P3C A;  1MG7 A;  1D6T A;  4HAC A;  2PO1 B;  4DV5 I;  1OYR A;  3UHM A;  4DR5 E;  2NN6 C;  4DR4 I;  2AE8 A;  4QNK A;  3T1H I;  2BM1 A;  1XHK A;  4B3T E;  3QT5 A;  1FWL A;  5DRP A;  2O1T A;  4LCH A;  4OZE A;  1IBK I;  2PO2 B;  2ZBK B;  1UDQ A;  1XMQ I;  4JG4 A;  3K17 A;  2BA1 G;  2HHH E;  2JT2 A;  2F4V E;  4IFD C;  5K36 C;  3CWV A;  3K1J A;  4DPU A;  4GQU A;  4OO1 B;  5FLX C;  3PYF A;  4JI6 I;  1J5E I;  4DR2 E;  4LFC E;  2PNL A;  3P3E A;  4DU8 A;  1DAR A;  1E3H A;  1USU A;  2C37 B;  2JE6 A;  1HNX I;  4MU0 A;  4J3D A;  3GLL A;  3LTO A;  3B82 A;  4FW3 A;  4JI3 E;  4OKG A;  3V5R A;  1FNM A;  1I94 E;  4YY3 I;  2J7K A;  4JI7 I;  2NN6 B;  4LF8 I;  4YHH I;  2JEB B;  1Z5B A;  3WU3 A;  5DNX A;  4MU4 A;  4LFB E;  2EFG A;  1N34 E;  1NZ0 A;  2HKJ A;  1ZM3 A;  1FWK A;  4PRV A;  4JI5 I;  2VQE I;  4FWG A;  1N0U A;  4AID A;  4IFD B;  1XNR I;  1N32 I;  2JEA B;  1FI4 A;  4UTG A;  4DUY E;  1A6F A;  2UXD E;  5K36 B;  3M7N G;  1B62 A;  4BA2 B;  1N0V C;  5DRO A;  1VIS A;  4BA1 B;  1N33 E;  2UXC E;  2AJ4 A;  3CDJ A;  1ELO A;  5LL6 R;  4DPX A;  4DV5 E;  5GMD A;  4FWD A;  4KHP I;  4XTJ A;  3V2U C;  3T1H E;  4HAC B;  4DV4 I;  2PNZ A;  3L7Z A;  4DV3 I;  4RPF A;  1R6L A;  3WU4 A;  2OI2 A;  2NN6 D;  3D4J A;  1Y4U A;  4MYT A;  1Z0B A;  1HNZ I;  3PYD A;  1H73 A;  1HNW I;  1WUU A;  1J5E E;  2IES A; 
#chains in the Genus database with same CATH homology
 4MU3 A;  4LOM A;  2F1D A;  4QNJ A;  4LPF A;  5DNL A;  5ELW A;  2AE8 A;  4QNK A;  4MU1 A;  4MU0 A;  5EL9 A;  5DNX A;  5EKW A;  4MU4 A;  1RHY A;  4GQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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