1RHYA

Crystal structure of imidazole glycerol phosphate dehydratase
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
186
structure length
180
Chain Sequence
SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLTAEDCALALGEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGENNHHIAESAFKALALAIRMAISR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazole glycerol phosphate dehydratase
publication title Crystal structure of imidazole glycerol-phosphate dehydratase: duplication of an unusual fold
pubmed doi rcsb
source organism Filobasidiella neoformans
total genus 55
structure length 180
sequence length 186
chains with identical sequence B
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2003-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 1rhyA02
2AE8A 4LOMA 5DNXA 4MU1A 5EKWA 4LPFA 5ELWA 4QNKA 5EL9A 4GQUA 1RHYA 4QNJA 4MU4A 5DNLA 4MU0A 4MU3A 2F1DA
chains in the Genus database with same CATH superfamily
4LF8I 3D4JA 5GMEA 1QZRA 2UU9E 4I3HA 4OO1D 3B4TA 2NN6D 2NN6C 4DR7I 4DV0I 2PO1B 4HYMA 1HNWI 4LF4E 4AIDA 3PYDA 1H73A 5EKWA 5GMDA 2IOPA 4LCHA 1PKPA 4JG4A 3T1HE 3GONA 2PO0B 1XMQI 2HFSA 2GO4A 1MG7A 2GS8A 3HULA 1IBKE 4IFDB 2ZBKB 3M85D 4GKKE 2VQEE 4DV2I 1D6TA 2UXDE 2C37B 4FW7A 1K47A 4IFDC 2BR2B 2UXBI 4X62E 1HR0I 4LF6I 3V2UC 2UUBI 2O1UA 4OO1A 2NN6A 2VQFE 1N33I 5JEAD 5LMNI 1N32I 2AJ4A 5JEAC 4PRVA 2CGEA 1VI7A 4JV5E 4KHPI 2BM0A 2HKJA 2BA1G 1ZM2A 4DR5E 3WU5A 1Z5BA 4DU8A 3WU6A 4UTGA 4DPXA 2X36A 2O3ZA 5BR8I 2F4VI 5K36F 5EL9A 4JI0E 4X64I 4Z7YA 3LPSA 2NPFA 4JI5I 3M7NG 2DEIA 4B3MI 4DR6E 3CDIA 4LF5E 5JEAA 1U2RA 3V5RA 3GLLA 4XTJA 5K36E 2X7IA 3L7ZB 5L3JA 2WNRA 4MYTA 3K17A 3LNUA 1HNXI 4JI1I 4JI4E 2WP8B 1XNQI 4JI7I 1E3HA 4LF7E 2HKEA 1B63A 2UUCI 1PVGA 4FWHA 4FW9A 2HFUA 3OTOI 4DUZI 2EFGA 4LPFA 4IZKB 4WUBA 5C0XF 4DR3I 2Z5EA 4OZEA 3QT8A 3B8HA 2PNZA 1Z0WA 4URLA 4B3ME 2IERA 4BA1A 1USUA 3PYGA 3H1CA 2E1RA 3U1YA 5LMUE 4DUYE 2PNMA 5C0XE 3J80C 2HHHE 3J81C 3L7ZA 2UUAI 4EMDA 4NXME 2UXCI 4DV7I 1IBME 1N34I 1XNRE 4DR4E 2GO3A 4DV6E 5K36B 4PRXA 3Q6NA 4LF9I 3JAMC 4JI3E 4X66E 4KQVA 2UUCE 2A2CA 4IZKA 2JEAA 5K36D 4IZJD 1N0UA 2BV3A 4NXNI 4DV3I 4MDTA 5K36C 4JI8E 4MYUA 2E5LE 1H74A 2VF3A 4YHHE 4OO1B 1KTVA 4JI6I 1NZ0A 3PS2A 4LFAI 4K0KI 1Y4SA 4DV5I 1VISA 3PYEA 1FWLA 4OO1C 4ZVIA 3P3GA 4MQYA 1R6LA 3P3EA 4DR2E 2UUAE 4OX9E 4NBQA 4DV1E 1FKAE 2O1WA 4HXZA 5K36A 2JE6A 4IZJA 4HY1A 2O1VA 1IBLE 5FWKA 1N36E 5C0XD 2J65A 5JEAB 4ED4A 5LL6R 4DXLA 4BA2A 4X65E 1FI4A 1H7SA 1NHJA 1I94E 4LFBE 3PS3A 5IT9C 1HNZE 4JI2E 3P76A 4LF8E 4LCGA 4WUCA 2WNRB 4LFAE 4DR1I 1B62A 1E3PA 4DU7A 4DR7E 4DV0E 1HNWE 3UHMA 3ZZUA 3B78A 3P06A 5C0XA 1ZM4A 1XMQE 1USVA 5A2QC 1A6FA 2PNZB 3ZZTA 3Q1QA 4R1FA 4DV2E 4GQUA 3J7AG 4BA1B 3F0NA 2F1DA 2ZM6I 2V2QA 1Z0BA 3KRNA 2Q2EB 2UXBE 1HR0E 1XXEA 2UUBE 4LF6E 4DPWA 5IWAI 4B3SI 2C39A 1N33E 3T1YI 5LMNE 4P7AA 1N32E 1Z5CA 4DPTA 1KKHA 2PO2A 4GKJI 4KHPE 2HK3A 2Z5CA 2HK2A 3B82A 1FJGI 3H4LA 4DV4I 4MU1A 4U3BA 1XMOI 5BR8E 4OKGA 4AQYI 2F4VE 5FLXC 2JEAB 4X64E 4FW4A 1YH8A 2PNLA 1UDQA 4YY3I 2LJPA 4JI5E 4LFCI 3M6AA 1Y4UA 4B3RI 1OYPA 1J5EI 1Z5AA 3J7AM 3ZZ0A 3M85G 2C38B 5DRQA 4Z7CA 2OI2A 4JYAI 1HK7A 4MU3A 4IFDF 4B3TI 1DARA 3DD6A 3GMEA 2BA1D 3U1KA 2IESA 1HNXE 4JI1E 2JE6B 1XNQE 4IZJB 4JI7E 2UU9I 3PYFA 3OTOE 4DUZE 4HACA 4IFDE 3J80Q 4LF4I 3J81Q 2IOQA 4DR3E 4DPYA 4BA2B 1KVKA 3M7ND 1R6MA 4FWGA 3T1HI 3PS1A 1Y60A 2V8PA 4J3DA 2CG9A 1OYRA 1Z0CA 2C38A 1IBKI 4GKKI 2VQEI 2J7KA 2UXDI 3JAMQ 1Y5YA 1ZM9A 4FW6A 1P42A 2CZ9A 4X62I 2UXCE 4DV7E 1N34E 1MX0A 3HJCA 1N0VC 2VQFI 4FWDA 1Z0GA 5C0XB 5DNLA 2Z5BA 4LF9E 4JV5I 1EA6A 3ZKBA 4UT4A 4DR5I 4QNJA 3CWVA 4NXNE 5C0XC 4DV3E 3NZKA 4IS9A 2BA0D 4USKA 5DNXA 4JI0I 4JI6E 2C39B 4K0KE 4DV5E 1ZXNA 4WUDA 4DR6I 2JEBA 2PO2B 1KIJA 2Z5CB 2CVEA 1RREA 4RPFA 1S16A 4LF5I 3ZM7A 4IFDD 2XEXA 4N3OA 1NHIA 1RHYA 1PIEA 5IT9Q 1Y6ZA 2PO1A 4JI4I 4USMA 3LTOA 4LF7I 2V34A 1YHCA 1S4EA 3Q6MA 3ZKDA 2A2DA 4DPUA 2PO0A 1Z0EA 4LOMA 4IFDA 4DR1E 5A2QQ 1ELOA 2C37A 1OJ4A 1H72C 3K1JA 3WU3A 5DRPA 2BR2A 1ZXMA 4AIMA 1H7UA 4U3DA 5DRRA 5LMUI 4OO1F 4DUYI 2NN6F 1ZM3A 2HHHI 4HACB 3CDJA 3K85A 3P3CA 4NXMI 1EI1A 1IBMI 1XNRI 4DR4I 4DV6I 1WUUA 5DROA 2DEJA 4M1KA 2WW4A 4ISAA 4MU0A 2ZM6E 2ZITA 4OO1E 2NN6E 4JI3I 4X66I 1UEKA 1FNMA 3QT6A 4B3SE 5IWAE 3T1YE 5FLXQ 4JI8I 2V2ZA 1FWKA 2E5LI 2GQ0A 3WU4A 4YHHI 2BA0G 5ELWA 4GKJE 2JT2A 1Z59A 1UDNA 5JEAF 3QT5A 1FJGE 4DV4E 4AM3A 3HKMA 2Z5BB 1XMOE 1OYSA 4AQYE 4MU4A 4DR2I 2V2VA 3QT7A 4FW3A 4YY3E 4P52A 4LFCE 4OX9I 4FW5A 4PU9A 4DV1I 5JEAE 2R42A 1BKNA 2WP8A 4B3RE 1J5EE 4FN5A 4QNKA 1UDOA 1IBLI 1XHKA 1Z0VA 2JEBB 2O1TA 3GCMA 2BM1A 1MU5A 1N36I 1RR9A 1UDSA 4JYAE 1NHHA 4X65I 4B3TE 2AE8A 3PRYA 4LCFA 1I94I 4LFBI 1Z0TA 2VESA 1HNZI 2R3VA 2NN6B 4JI2I
chains in the Genus database with same CATH topology
2AE8A 4LOMA 5DNXA 4MU1A 5EKWA 4LPFA 5ELWA 4QNKA 5EL9A 4GQUA 1RHYA 4QNJA 4MU4A 5DNLA 4MU0A 4MU3A 2F1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AE8 A;  4LOM A;  5DNX A;  4MU1 A;  5EKW A;  4LPF A;  5ELW A;  4QNK A;  5EL9 A;  4GQU A;  1RHY A;  4QNJ A;  4MU4 A;  5DNL A;  4MU0 A;  4MU3 A;  2F1D A; 
#chains in the Genus database with same CATH topology
 4LF8 I;  3D4J A;  5GME A;  1QZR A;  2UU9 E;  4I3H A;  4OO1 D;  3B4T A;  2NN6 D;  2NN6 C;  4DR7 I;  4DV0 I;  2PO1 B;  4HYM A;  1HNW I;  4LF4 E;  4AID A;  3PYD A;  1H73 A;  5EKW A;  5GMD A;  2IOP A;  4LCH A;  1PKP A;  4JG4 A;  3T1H E;  3GON A;  2PO0 B;  1XMQ I;  2HFS A;  2GO4 A;  1MG7 A;  2GS8 A;  3HUL A;  1IBK E;  4IFD B;  2ZBK B;  3M85 D;  4GKK E;  2VQE E;  4DV2 I;  1D6T A;  2UXD E;  2C37 B;  4FW7 A;  1K47 A;  4IFD C;  2BR2 B;  2UXB I;  4X62 E;  1HR0 I;  4LF6 I;  3V2U C;  2UUB I;  2O1U A;  4OO1 A;  2NN6 A;  2VQF E;  1N33 I;  5JEA D;  5LMN I;  1N32 I;  2AJ4 A;  5JEA C;  4PRV A;  2CGE A;  1VI7 A;  4JV5 E;  4KHP I;  2BM0 A;  2HKJ A;  2BA1 G;  1ZM2 A;  4DR5 E;  3WU5 A;  1Z5B A;  4DU8 A;  3WU6 A;  4UTG A;  4DPX A;  2X36 A;  2O3Z A;  5BR8 I;  2F4V I;  5K36 F;  5EL9 A;  4JI0 E;  4X64 I;  4Z7Y A;  3LPS A;  2NPF A;  4JI5 I;  3M7N G;  2DEI A;  4B3M I;  4DR6 E;  3CDI A;  4LF5 E;  5JEA A;  1U2R A;  3V5R A;  3GLL A;  4XTJ A;  5K36 E;  2X7I A;  3L7Z B;  5L3J A;  2WNR A;  4MYT A;  3K17 A;  3LNU A;  1HNX I;  4JI1 I;  4JI4 E;  2WP8 B;  1XNQ I;  4JI7 I;  1E3H A;  4LF7 E;  2HKE A;  1B63 A;  2UUC I;  1PVG A;  4FWH A;  4FW9 A;  2HFU A;  3OTO I;  4DUZ I;  2EFG A;  4LPF A;  4IZK B;  4WUB A;  5C0X F;  4DR3 I;  2Z5E A;  4OZE A;  3QT8 A;  3B8H A;  2PNZ A;  1Z0W A;  4URL A;  4B3M E;  2IER A;  4BA1 A;  1USU A;  3PYG A;  3H1C A;  2E1R A;  3U1Y A;  5LMU E;  4DUY E;  2PNM A;  5C0X E;  3J80 C;  2HHH E;  3J81 C;  3L7Z A;  2UUA I;  4EMD A;  4NXM E;  2UXC I;  4DV7 I;  1IBM E;  1N34 I;  1XNR E;  4DR4 E;  2GO3 A;  4DV6 E;  5K36 B;  4PRX A;  3Q6N A;  4LF9 I;  3JAM C;  4JI3 E;  4X66 E;  4KQV A;  2UUC E;  2A2C A;  4IZK A;  2JEA A;  5K36 D;  4IZJ D;  1N0U A;  2BV3 A;  4NXN I;  4DV3 I;  4MDT A;  5K36 C;  4JI8 E;  4MYU A;  2E5L E;  1H74 A;  2VF3 A;  4YHH E;  4OO1 B;  1KTV A;  4JI6 I;  1NZ0 A;  3PS2 A;  4LFA I;  4K0K I;  1Y4S A;  4DV5 I;  1VIS A;  3PYE A;  1FWL A;  4OO1 C;  4ZVI A;  3P3G A;  4MQY A;  1R6L A;  3P3E A;  4DR2 E;  2UUA E;  4OX9 E;  4NBQ A;  4DV1 E;  1FKA E;  2O1W A;  4HXZ A;  5K36 A;  2JE6 A;  4IZJ A;  4HY1 A;  2O1V A;  1IBL E;  5FWK A;  1N36 E;  5C0X D;  2J65 A;  5JEA B;  4ED4 A;  5LL6 R;  4DXL A;  4BA2 A;  4X65 E;  1FI4 A;  1H7S A;  1NHJ A;  1I94 E;  4LFB E;  3PS3 A;  5IT9 C;  1HNZ E;  4JI2 E;  3P76 A;  4LF8 E;  4LCG A;  4WUC A;  2WNR B;  4LFA E;  4DR1 I;  1B62 A;  1E3P A;  4DU7 A;  4DR7 E;  4DV0 E;  1HNW E;  3UHM A;  3ZZU A;  3B78 A;  3P06 A;  5C0X A;  1ZM4 A;  1XMQ E;  1USV A;  5A2Q C;  1A6F A;  2PNZ B;  3ZZT A;  3Q1Q A;  4R1F A;  4DV2 E;  4GQU A;  3J7A G;  4BA1 B;  3F0N A;  2F1D A;  2ZM6 I;  2V2Q A;  1Z0B A;  3KRN A;  2Q2E B;  2UXB E;  1HR0 E;  1XXE A;  2UUB E;  4LF6 E;  4DPW A;  5IWA I;  4B3S I;  2C39 A;  1N33 E;  3T1Y I;  5LMN E;  4P7A A;  1N32 E;  1Z5C A;  4DPT A;  1KKH A;  2PO2 A;  4GKJ I;  4KHP E;  2HK3 A;  2Z5C A;  2HK2 A;  3B82 A;  1FJG I;  3H4L A;  4DV4 I;  4MU1 A;  4U3B A;  1XMO I;  5BR8 E;  4OKG A;  4AQY I;  2F4V E;  5FLX C;  2JEA B;  4X64 E;  4FW4 A;  1YH8 A;  2PNL A;  1UDQ A;  4YY3 I;  2LJP A;  4JI5 E;  4LFC I;  3M6A A;  1Y4U A;  4B3R I;  1OYP A;  1J5E I;  1Z5A A;  3J7A M;  3ZZ0 A;  3M85 G;  2C38 B;  5DRQ A;  4Z7C A;  2OI2 A;  4JYA I;  1HK7 A;  4MU3 A;  4IFD F;  4B3T I;  1DAR A;  3DD6 A;  3GME A;  2BA1 D;  3U1K A;  2IES A;  1HNX E;  4JI1 E;  2JE6 B;  1XNQ E;  4IZJ B;  4JI7 E;  2UU9 I;  3PYF A;  3OTO E;  4DUZ E;  4HAC A;  4IFD E;  3J80 Q;  4LF4 I;  3J81 Q;  2IOQ A;  4DR3 E;  4DPY A;  4BA2 B;  1KVK A;  3M7N D;  1R6M A;  4FWG A;  3T1H I;  3PS1 A;  1Y60 A;  2V8P A;  4J3D A;  2CG9 A;  1OYR A;  1Z0C A;  2C38 A;  1IBK I;  4GKK I;  2VQE I;  2J7K A;  2UXD I;  3JAM Q;  1Y5Y A;  1ZM9 A;  4FW6 A;  1P42 A;  2CZ9 A;  4X62 I;  2UXC E;  4DV7 E;  1N34 E;  1MX0 A;  3HJC A;  1N0V C;  2VQF I;  4FWD A;  1Z0G A;  5C0X B;  5DNL A;  2Z5B A;  4LF9 E;  4JV5 I;  1EA6 A;  3ZKB A;  4UT4 A;  4DR5 I;  4QNJ A;  3CWV A;  4NXN E;  5C0X C;  4DV3 E;  3NZK A;  4IS9 A;  2BA0 D;  4USK A;  5DNX A;  4JI0 I;  4JI6 E;  2C39 B;  4K0K E;  4DV5 E;  1ZXN A;  4WUD A;  4DR6 I;  2JEB A;  2PO2 B;  1KIJ A;  2Z5C B;  2CVE A;  1RRE A;  4RPF A;  1S16 A;  4LF5 I;  3ZM7 A;  4IFD D;  2XEX A;  4N3O A;  1NHI A;  1RHY A;  1PIE A;  5IT9 Q;  1Y6Z A;  2PO1 A;  4JI4 I;  4USM A;  3LTO A;  4LF7 I;  2V34 A;  1YHC A;  1S4E A;  3Q6M A;  3ZKD A;  2A2D A;  4DPU A;  2PO0 A;  1Z0E A;  4LOM A;  4IFD A;  4DR1 E;  5A2Q Q;  1ELO A;  2C37 A;  1OJ4 A;  1H72 C;  3K1J A;  3WU3 A;  5DRP A;  2BR2 A;  1ZXM A;  4AIM A;  1H7U A;  4U3D A;  5DRR A;  5LMU I;  4OO1 F;  4DUY I;  2NN6 F;  1ZM3 A;  2HHH I;  4HAC B;  3CDJ A;  3K85 A;  3P3C A;  4NXM I;  1EI1 A;  1IBM I;  1XNR I;  4DR4 I;  4DV6 I;  1WUU A;  5DRO A;  2DEJ A;  4M1K A;  2WW4 A;  4ISA A;  4MU0 A;  2ZM6 E;  2ZIT A;  4OO1 E;  2NN6 E;  4JI3 I;  4X66 I;  1UEK A;  1FNM A;  3QT6 A;  4B3S E;  5IWA E;  3T1Y E;  5FLX Q;  4JI8 I;  2V2Z A;  1FWK A;  2E5L I;  2GQ0 A;  3WU4 A;  4YHH I;  2BA0 G;  5ELW A;  4GKJ E;  2JT2 A;  1Z59 A;  1UDN A;  5JEA F;  3QT5 A;  1FJG E;  4DV4 E;  4AM3 A;  3HKM A;  2Z5B B;  1XMO E;  1OYS A;  4AQY E;  4MU4 A;  4DR2 I;  2V2V A;  3QT7 A;  4FW3 A;  4YY3 E;  4P52 A;  4LFC E;  4OX9 I;  4FW5 A;  4PU9 A;  4DV1 I;  5JEA E;  2R42 A;  1BKN A;  2WP8 A;  4B3R E;  1J5E E;  4FN5 A;  4QNK A;  1UDO A;  1IBL I;  1XHK A;  1Z0V A;  2JEB B;  2O1T A;  3GCM A;  2BM1 A;  1MU5 A;  1N36 I;  1RR9 A;  1UDS A;  4JYA E;  1NHH A;  4X65 I;  4B3T E;  2AE8 A;  3PRY A;  4LCF A;  1I94 I;  4LFB I;  1Z0T A;  2VES A;  1HNZ I;  2R3V A;  2NN6 B;  4JI2 I; 
#chains in the Genus database with same CATH homology
 2AE8 A;  4LOM A;  5DNX A;  4MU1 A;  5EKW A;  4LPF A;  5ELW A;  4QNK A;  5EL9 A;  4GQU A;  1RHY A;  4QNJ A;  4MU4 A;  5DNL A;  4MU0 A;  4MU3 A;  2F1D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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