1QXF | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	58
structure length	58
Chain Sequence	MHSRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIKAEIIEYVDQIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
source organism	Archaeoglobus fulgidus
publication title	The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold pubmed doi rcsb
molecule keywords	30S RIBOSOMAL PROTEIN S27E
total genus	2
structure length	58
sequence length	58
ec nomenclature
pdb deposition date	2003-09-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01667	Ribosomal_S27e	Ribosomal protein S27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.25.100	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	Zn-binding ribosomal proteins	1qxfA00

1QXFA
chains in the Genus database with same CATH superfamily

3IX0A 3Q87A 3FQMA 1ZH1A 1Y1VI 3CPWZ 1K83I 2IZ3A 4NB8A 3GTQI 1VQ61 2JA8I 2DE6A 3CMAZ 2JA5I 3J80f 1QVFY 2P28A 2QRCB 3J81b 1VQ8Z 3CC4Z 3CMA1 1VQKZ 3BG1B 2EGTA 2R7ZI 2HU9A 1X3WA 1RLYA 2V8IA 4BY1I 3HOXI 3CCMZ 1VQ81 3CC41 2AKLA 3FQQA 1VQK1 1YIJZ 3EEDA 2LIYA 4A93I 3OW2Y 2JIRA 1RNIA 2AYDA 1X3ZA 3CCM1 2GU2A 2JMOA 1YJ9Z 2O53A 3D9XA 3S14I 3TDHB 3G6EZ 1YIJ1 1TWCI 2O4HA 5FLXf 1QXFA 5D1OB 1WZNA 3HOUI 3I55Z 3P5JB 1YJ91 4DK1A 3G6E1 4E2YA 3GKQA 2YADA 3KIFA 2RPRA 2BJOA 2JA7I 1QF8A 4HH4A 2VPWA 3I551 1RO4A 1Y1VS 4TNUA 3VMHA 2VPYA 2W03A 4MD9A 4BY7I 1NJI2 4BBSI 4RVDA 4X6AI 1K731 2K5RA 1NJI1 2NVXI 1VQPZ 3S2HI 2V3VA 1Q16A 3CCVZ 4E31A 2WB1A 3RZOI 4E2WA 2VF1A 1VQP1 3PO3I 1M902 2OOXB 4S1TA 3GTJI 2J6AA 1K8A2 5C4JI 4E30A 1M901 3CCV1 3RZDI 2Y0SA 1TFIA 4A3EI 3EERA 1VQ7Z 1Y1WI 2HF1A 3F3FC 3HOVI 1FDOA 2KPIA 3BG0B 1TWGI 3TE5B 3CCJZ 3OW2Z 3I4MI 2E2HI 3NFZA 1VQ71 4NBAA 4A3KI 4NBBA 1Q7Y2 5AN9F 2KI7B 3CCJ1 3S16I 2E7ZA 1ZB8A 1Q7Y1 4EWCA 1Z02A 1DL6A 2JIPA 2RHBA 5IP7I 1KD12 2V45A 2R6MA 1KD11 1KRLA 4DQYB 1YJNZ 2OTLZ 2JS4A 3J80b 1AA6A 3H3VJ 2E9HA 3GTPI 2JNYA 2RT9A 4NBDA 2F4OA 3J7A4 4A3MI 2R93I 1YJN1 2OTL1 4HGYA 4NBCA 3CCEZ 3M3YI 1WW9A 5IT9f 2QREB 1N8R2 3VB9A 3CCLZ 1KQSZ 1N8R1 2NVTI 3CC2Z 1VQNZ 4E2ZA 3D6WA 4NB9A 3CCE1 3GTMI 1S72Z 1SFOI 1TWFI 4RVGA 5IT9b 4NH1C 2Q4ZA 3NH8A 3CCL1 1M1K2 1KC82 4DGLA 5A2Qf 4A3BI 1M1K1 3CC21 2RIQA 3F3PC 1VQN1 2JA6I 2I3CA 5FLXb 4Y52I 2H85A 2ZAEB 1S721 1QVGY 3H0GI 2VPXA 4E32A 3QWUA 4A3CI 1JWHC 1ZB9A 3G4SZ 1NP6A 4RS4A 3ESWA 4E2XA 5D1PA 1USPA 1KQSY 2JIOA 3I4NI 4RVHA 1TWHI 3CCUZ 3GTLI 3GTGI 4A3GI 4CL1A 3S1NI 3K7AI 3G4S1 1WCMI 2LEXA 1YUKA 1K9M2 3CCRZ 2M6NA 2LFUA 3JAMf 1K9M1 3CCU1 1Z03A 3M4OI 2V8JA 4RVFA 2OOYB 3NH4A 3VMIA 1K8A1 2IZ4A 1Z01A 3IF8A 3CCR1 3KIHA 4A3JI 1VQMZ 2NVYI 2QRDB 4E33A 2QEXZ 4RV9A 2K3RA 4NBFA 2GTIA 2JIQA 5C4XI 3T4NB 1FDIA 5IP9I 1VQM1 3MZKB 4MD7A 4XX2A 1YUAA 3I56Z 2P3YA 2QR1B 3CD6Z 1Y8CA 3S15I 3S1MI 4NOZA 4HGZA 2F4MA 2JUBA 3NDJA 5T67A 2DE5A 1WIIA 4NBEA 2R92I 3CD61 3I561 3CCSZ 2NAPA 2V8KA 1JJ2Y 4AYBA 3S1RI 2PK7A 1R9TI 1VQ4Z 1YI2Z 1Q812 3J81f 3CCS1 1W2BZ 1Q862 1Q811 1VQ5Z 1QVGZ 1LQLA 1YJWZ 1Q861 1ML8A 4MH4A 1RO0A 1VQOZ 1VQ41 1YI21 3S1QI 3GTOI 1X0TA 3GCFA 4A3II 4A3LI 1I6HI 4Y7NI 3VMGA 1VQ51 1I3QI 1TWAI 1YJW1 3PO3S 2JIMA 3HOYI 1QYPA 3NDIA 1VQO1 1YHQZ 3U50C 1N2FA 3S17I 2QA4Z 2YU9I 2B63I 2JR6A 2PM9A 5LL6f 3NH5A 2QKDA 2E2II 2IV2X 1P9NA 4MONA 2RBLA 3D2LA 5CM2M 3CPWY 2VUMI 2OTJZ 1KC81 1YHQ1 2GTHA 1W2BY 2QA41 4NFRA 1RQFA 4MRIA 4NBHA 1USPB 2G2KA 2W04A 5T64A 1L1OC 5A2Qb 3I07A 2OTJ1 2DE7A 3VTNA 3CXCZ 2NVQI 3PO2I 4MXUA 5D1OA 3LUSA 3FKII 1VLAA 4QTTA 5FLMI 3HKZA 3GTKI 3IFUA 1SIWA 1K732 2OZKA 1PFTA 1VQLZ 3CC7Z 3G71Z 2Q51A 1WJ2A 4A3DI 1NUIA 1JJ2Z 5C3EI 4NBGA 3S2DI 3JAMb 5C44I 5T6BA 2E2JI 2VUGA 1VQL1 3CC71 1Q822 3MONA 3G711 1S7MA 1VQ9Z 2VPZA 1Q821 3CXCY 3CMEZ 2M48A 1I50I 1QVFZ 4BBRI 4QTUA 3GTMS 3CCQZ 4MD8A 1YITZ 2QEX1 1VQ91 1RO2A 3CME1 2PMZA 4A3FI 3HOWI 3MZLB 3IR7A 4BXXI 2QLVB 1VQ6Z 3CCQ1 3HOZI 3CQZI 1YIT1 2WAQA
chains in the Genus database with same CATH topology

1QXFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1QXF A; 
#chains in the Genus database with same CATH topology
 3IX0 A;  3Q87 A;  3FQM A;  1ZH1 A;  1Y1V I;  3CPW Z;  1K83 I;  2IZ3 A;  4NB8 A;  3GTQ I;  1VQ6 1;  2JA8 I;  2DE6 A;  3CMA Z;  2JA5 I;  3J80 f;  1QVF Y;  2P28 A;  2QRC B;  3J81 b;  1VQ8 Z;  3CC4 Z;  3CMA 1;  1VQK Z;  3BG1 B;  2EGT A;  2R7Z I;  2HU9 A;  1X3W A;  1RLY A;  2V8I A;  4BY1 I;  3HOX I;  3CCM Z;  1VQ8 1;  3CC4 1;  2AKL A;  3FQQ A;  1VQK 1;  1YIJ Z;  3EED A;  2LIY A;  4A93 I;  3OW2 Y;  2JIR A;  1RNI A;  2AYD A;  1X3Z A;  3CCM 1;  2GU2 A;  2JMO A;  1YJ9 Z;  2O53 A;  3D9X A;  3S14 I;  3TDH B;  3G6E Z;  1YIJ 1;  1TWC I;  2O4H A;  5FLX f;  1QXF A;  5D1O B;  1WZN A;  3HOU I;  3I55 Z;  3P5J B;  1YJ9 1;  4DK1 A;  3G6E 1;  4E2Y A;  3GKQ A;  2YAD A;  3KIF A;  2RPR A;  2BJO A;  2JA7 I;  1QF8 A;  4HH4 A;  2VPW A;  3I55 1;  1RO4 A;  1Y1V S;  4TNU A;  3VMH A;  2VPY A;  2W03 A;  4MD9 A;  4BY7 I;  1NJI 2;  4BBS I;  4RVD A;  4X6A I;  1K73 1;  2K5R A;  1NJI 1;  2NVX I;  1VQP Z;  3S2H I;  2V3V A;  1Q16 A;  3CCV Z;  4E31 A;  2WB1 A;  3RZO I;  4E2W A;  2VF1 A;  1VQP 1;  3PO3 I;  1M90 2;  2OOX B;  4S1T A;  3GTJ I;  2J6A A;  1K8A 2;  5C4J I;  4E30 A;  1M90 1;  3CCV 1;  3RZD I;  2Y0S A;  1TFI A;  4A3E I;  3EER A;  1VQ7 Z;  1Y1W I;  2HF1 A;  3F3F C;  3HOV I;  1FDO A;  2KPI A;  3BG0 B;  1TWG I;  3TE5 B;  3CCJ Z;  3OW2 Z;  3I4M I;  2E2H I;  3NFZ A;  1VQ7 1;  4NBA A;  4A3K I;  4NBB A;  1Q7Y 2;  5AN9 F;  2KI7 B;  3CCJ 1;  3S16 I;  2E7Z A;  1ZB8 A;  1Q7Y 1;  4EWC A;  1Z02 A;  1DL6 A;  2JIP A;  2RHB A;  5IP7 I;  1KD1 2;  2V45 A;  2R6M A;  1KD1 1;  1KRL A;  4DQY B;  1YJN Z;  2OTL Z;  2JS4 A;  3J80 b;  1AA6 A;  3H3V J;  2E9H A;  3GTP I;  2JNY A;  2RT9 A;  4NBD A;  2F4O A;  3J7A 4;  4A3M I;  2R93 I;  1YJN 1;  2OTL 1;  4HGY A;  4NBC A;  3CCE Z;  3M3Y I;  1WW9 A;  5IT9 f;  2QRE B;  1N8R 2;  3VB9 A;  3CCL Z;  1KQS Z;  1N8R 1;  2NVT I;  3CC2 Z;  1VQN Z;  4E2Z A;  3D6W A;  4NB9 A;  3CCE 1;  3GTM I;  1S72 Z;  1SFO I;  1TWF I;  4RVG A;  5IT9 b;  4NH1 C;  2Q4Z A;  3NH8 A;  3CCL 1;  1M1K 2;  1KC8 2;  4DGL A;  5A2Q f;  4A3B I;  1M1K 1;  3CC2 1;  2RIQ A;  3F3P C;  1VQN 1;  2JA6 I;  2I3C A;  5FLX b;  4Y52 I;  2H85 A;  2ZAE B;  1S72 1;  1QVG Y;  3H0G I;  2VPX A;  4E32 A;  3QWU A;  4A3C I;  1JWH C;  1ZB9 A;  3G4S Z;  1NP6 A;  4RS4 A;  3ESW A;  4E2X A;  5D1P A;  1USP A;  1KQS Y;  2JIO A;  3I4N I;  4RVH A;  1TWH I;  3CCU Z;  3GTL I;  3GTG I;  4A3G I;  4CL1 A;  3S1N I;  3K7A I;  3G4S 1;  1WCM I;  2LEX A;  1YUK A;  1K9M 2;  3CCR Z;  2M6N A;  2LFU A;  3JAM f;  1K9M 1;  3CCU 1;  1Z03 A;  3M4O I;  2V8J A;  4RVF A;  2OOY B;  3NH4 A;  3VMI A;  1K8A 1;  2IZ4 A;  1Z01 A;  3IF8 A;  3CCR 1;  3KIH A;  4A3J I;  1VQM Z;  2NVY I;  2QRD B;  4E33 A;  2QEX Z;  4RV9 A;  2K3R A;  4NBF A;  2GTI A;  2JIQ A;  5C4X I;  3T4N B;  1FDI A;  5IP9 I;  1VQM 1;  3MZK B;  4MD7 A;  4XX2 A;  1YUA A;  3I56 Z;  2P3Y A;  2QR1 B;  3CD6 Z;  1Y8C A;  3S15 I;  3S1M I;  4NOZ A;  4HGZ A;  2F4M A;  2JUB A;  3NDJ A;  5T67 A;  2DE5 A;  1WII A;  4NBE A;  2R92 I;  3CD6 1;  3I56 1;  3CCS Z;  2NAP A;  2V8K A;  1JJ2 Y;  4AYB A;  3S1R I;  2PK7 A;  1R9T I;  1VQ4 Z;  1YI2 Z;  1Q81 2;  3J81 f;  3CCS 1;  1W2B Z;  1Q86 2;  1Q81 1;  1VQ5 Z;  1QVG Z;  1LQL A;  1YJW Z;  1Q86 1;  1ML8 A;  4MH4 A;  1RO0 A;  1VQO Z;  1VQ4 1;  1YI2 1;  3S1Q I;  3GTO I;  1X0T A;  3GCF A;  4A3I I;  4A3L I;  1I6H I;  4Y7N I;  3VMG A;  1VQ5 1;  1I3Q I;  1TWA I;  1YJW 1;  3PO3 S;  2JIM A;  3HOY I;  1QYP A;  3NDI A;  1VQO 1;  1YHQ Z;  3U50 C;  1N2F A;  3S17 I;  2QA4 Z;  2YU9 I;  2B63 I;  2JR6 A;  2PM9 A;  5LL6 f;  3NH5 A;  2QKD A;  2E2I I;  2IV2 X;  1P9N A;  4MON A;  2RBL A;  3D2L A;  5CM2 M;  3CPW Y;  2VUM I;  2OTJ Z;  1KC8 1;  1YHQ 1;  2GTH A;  1W2B Y;  2QA4 1;  4NFR A;  1RQF A;  4MRI A;  4NBH A;  1USP B;  2G2K A;  2W04 A;  5T64 A;  1L1O C;  5A2Q b;  3I07 A;  2OTJ 1;  2DE7 A;  3VTN A;  3CXC Z;  2NVQ I;  3PO2 I;  4MXU A;  5D1O A;  3LUS A;  3FKI I;  1VLA A;  4QTT A;  5FLM I;  3HKZ A;  3GTK I;  3IFU A;  1SIW A;  1K73 2;  2OZK A;  1PFT A;  1VQL Z;  3CC7 Z;  3G71 Z;  2Q51 A;  1WJ2 A;  4A3D I;  1NUI A;  1JJ2 Z;  5C3E I;  4NBG A;  3S2D I;  3JAM b;  5C44 I;  5T6B A;  2E2J I;  2VUG A;  1VQL 1;  3CC7 1;  1Q82 2;  3MON A;  3G71 1;  1S7M A;  1VQ9 Z;  2VPZ A;  1Q82 1;  3CXC Y;  3CME Z;  2M48 A;  1I50 I;  1QVF Z;  4BBR I;  4QTU A;  3GTM S;  3CCQ Z;  4MD8 A;  1YIT Z;  2QEX 1;  1VQ9 1;  1RO2 A;  3CME 1;  2PMZ A;  4A3F I;  3HOW I;  3MZL B;  3IR7 A;  4BXX I;  2QLV B;  1VQ6 Z;  3CCQ 1;  3HOZ I;  3CQZ I;  1YIT 1;  2WAQ A; 
#chains in the Genus database with same CATH homology
 1QXF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QXFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations