The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
2
|
sequence length |
58
|
structure length |
58
|
Chain Sequence |
MHSRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIKAEIIEYVDQIE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ribosome
|
| source organism |
Archaeoglobus fulgidus
|
| publication title |
The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold
pubmed doi rcsb |
| molecule keywords |
30S RIBOSOMAL PROTEIN S27E
|
| total genus |
2
|
| structure length |
58
|
| sequence length |
58
|
| ec nomenclature | |
| pdb deposition date | 2003-09-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01667 | Ribosomal_S27e | Ribosomal protein S27 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | Zn-binding ribosomal proteins |
#chains in the Genus database with same CATH superfamily 1QXF A; #chains in the Genus database with same CATH topology 1ZH1 A; 2YAD A; 3PO2 I; 2P3Y A; 1K8A 1; 1QYP A; 4E30 A; 2VUG A; 2P28 A; 2E2I I; 1DL6 A; 1VQ4 Z; 1K8A 2; 4E33 A; 1K83 I; 1NJI 1; 3HOY I; 3GTJ I; 3BG1 B; 2VPW A; 3S16 I; 4CL1 A; 1TWA I; 2AKL A; 2V8K A; 4DGL A; 4NBG A; 1Y1V I; 1VQK 1; 1FDO A; 1X3Z A; 1NJI 2; 1KQS Z; 4NB8 A; 4MRI A; 2JIR A; 3S1R I; 2K5R A; 3PO3 I; 1VQ8 1; 2IV2 X; 3CCS Z; 1TWC I; 3MZK B; 1ML8 A; 5A2Q f; 1VQ9 Z; 2O53 A; 3GTL I; 2JNY A; 3FQQ A; 2JA8 I; 1WII A; 2QRC B; 3F3P C; 4DK1 A; 4A3K I; 1YI2 Z; 2RBL A; 1QF8 A; 3MON A; 4A3I I; 2F4M A; 4AYB A; 3GTM I; 3CPW Y; 3IX0 A; 1YHQ Z; 1VQO Z; 4HH4 A; 3IFU A; 3CQZ I; 3NH8 A; 1Q7Y 1; 3LUS A; 2PK7 A; 4RV9 A; 3S1Q I; 5CM2 M; 3GCF A; 1Q7Y 2; 2NVQ I; 3GTP I; 3IR7 A; 2K3R A; 1Q81 1; 1TWG I; 2OTJ 1; 4A3J I; 5A2Q b; 1Q81 2; 1Q16 A; 2EGT A; 3CC7 1; 2E2H I; 3EER A; 1RLY A; 1Q86 1; 3G6E 1; 3NDJ A; 4NBD A; 2R6M A; 1AA6 A; 3MZL B; 2RHB A; 4RVD A; 3I56 Z; 2LFU A; 2W04 A; 1USP A; 3RZO I; 1YUK A; 4E2Z A; 2J6A A; 3CCQ 1; 3CMA 1; 2W03 A; 1I3Q I; 1VQ6 1; 1Q82 2; 3JAM f; 2WB1 A; 3NH5 A; 1JWH C; 4MH4 A; 5T6B A; 3GTG I; 2JIQ A; 1YJW 1; 1WZN A; 2LIY A; 1Y8C A; 3CME 1; 1YIT 1; 1W2B Z; 3CC2 1; 4NH1 C; 3CCM 1; 3CPW Z; 3NDI A; 1NUI A; 5T67 A; 4MD7 A; 1K73 2; 2OOY B; 4NBH A; 3P5J B; 3GTO I; 1KRL A; 1YIJ 1; 2E2J I; 2F4O A; 3U50 C; 3RZD I; 1VQ5 1; 2NVT I; 4NBA A; 4BY1 I; 1WW9 A; 4BY7 I; 4NBF A; 5D1O A; 1RQF A; 2JUB A; 4RVG A; 5C4J I; 3JAM b; 2ZAE B; 3I55 1; 3K7A I; 3J80 f; 4MON A; 1P9N A; 5T64 A; 1VQ7 1; 2QRE B; 3CD6 1; 2OTL Z; 2M6N A; 3D6W A; 3CC4 1; 3VTN A; 1VQL 1; 4HGZ A; 3CCE 1; 4X6A I; 2KPI A; 1X0T A; 1YUA A; 3CCR 1; 2VPY A; 4BBR I; 4A3G I; 4BXX I; 3CCL 1; 2DE7 A; 3G71 1; 5IT9 f; 1QVG Y; 3S2D I; 3NH4 A; 3CCJ Z; 1W2B Y; 1R9T I; 4NFR A; 2PM9 A; 1Y1V S; 2QKD A; 5FLM I; 2QR1 B; 1VQM 1; 3CCV 1; 3S14 I; 2R93 I; 3D2L A; 3CCU 1; 2G2K A; 1VQN 1; 4NBC A; 3CCQ Z; 3G4S Z; 1VQ4 1; 1S72 Z; 3J80 b; 2JS4 A; 3FQM A; 2QEX 1; 1QVF Y; 3HOU I; 4TNU A; 5D1P A; 1YJW Z; 1KD1 1; 2RPR A; 3S15 I; 4A3D I; 3HOZ I; 4MXU A; 3FKI I; 3VB9 A; 1KD1 2; 3CME Z; 3CC2 Z; 2NAP A; 1VQP 1; 2JIO A; 1YJ9 1; 3GTM S; 1VQ9 1; 5IT9 b; 1ZB8 A; 2QRD B; 1WJ2 A; 5FLX f; 1YJN Z; 2V8J A; 2V8I A; 1Q82 1; 2JA5 I; 4NBE A; 4E32 A; 1YIJ Z; 2HF1 A; 2V3V A; 2R7Z I; 3HOW I; 2M48 A; 3KIF A; 1VQ5 Z; 1YI2 1; 4A3M I; 2YU9 I; 3I4N I; 1QVG Z; 4MD8 A; 3J81 f; 1VQK Z; 4E31 A; 2OOX B; 1VQ7 Z; 1K73 1; 1USP B; 2VPZ A; 2IZ4 A; 1VQ8 Z; 3CD6 Z; 3CC4 Z; 1VQL Z; 2HU9 A; 4S1T A; 4A93 I; 1M90 1; 1PFT A; 1RNI A; 3CCL Z; 2JIM A; 3G71 Z; 4RVF A; 1M90 2; 5FLX b; 3ESW A; 1TFI A; 1QVF Z; 2JR6 A; 2QA4 1; 4A3B I; 2Y0S A; 3T4N B; 2RT9 A; 1N8R 1; 2DE6 A; 3I4M I; 1VQM Z; 3CCV Z; 1N8R 2; 4RVH A; 4Y7N I; 5IP9 I; 1LQL A; 3CCU Z; 1VQN Z; 2VF1 A; 3J81 b; 4E2W A; 5LL6 f; 4E2X A; 3S17 I; 2BJO A; 2AYD A; 2QEX Z; 3M3Y I; 2OTJ Z; 2E9H A; 3S1N I; 1NP6 A; 2V45 A; 5D1O B; 2JA6 I; 2NVX I; 3CC7 Z; 1FDI A; 1RO0 A; 3G6E Z; 2Q51 A; 1VQP Z; 1YJ9 Z; 4QTT A; 1QXF A; 1JJ2 Y; 3F3F C; 2KI7 B; 3VMI A; 2JMO A; 3HOX I; 3CXC Y; 3PO3 S; 4RS4 A; 2NVY I; 3CMA Z; 2JA7 I; 3H3V J; 1VQ6 Z; 3NFZ A; 1X3W A; 2PMZ A; 3GKQ A; 3Q87 A; 1SIW A; 3OW2 Y; 2QLV B; 4EWC A; 3GTK I; 2OZK A; 1Y1W I; 2GTI A; 3KIH A; 4NBB A; 2LEX A; 3IF8 A; 4QTU A; 4A3L I; 4E2Y A; 3HKZ A; 1RO4 A; 1YIT Z; 3J7A 4; 2IZ3 A; 2OTL 1; 3CCM Z; 3CCS 1; 3D9X A; 4DQY B; 3VMH A; 2GTH A; 3M4O I; 2B63 I; 1I6H I; 1WCM I; 3QWU A; 4HGY A; 1S7M A; 2JIP A; 4MD9 A; 1K9M 1; 2Q4Z A; 4NOZ A; 1ZB9 A; 3TDH B; 3CCJ 1; 1K9M 2; 1KQS Y; 1TWH I; 3TE5 B; 2QA4 Z; 1VLA A; 1Q86 2; 3GTQ I; 3S1M I; 1TWF I; 1YHQ 1; 1VQO 1; 3I07 A; 4XX2 A; 2RIQ A; 1SFO I; 2WAQ A; 3I55 Z; 4Y52 I; 2E7Z A; 1I50 I; 4BBS I; 1Z03 A; 1N2F A; 1M1K 1; 1JJ2 Z; 3G4S 1; 4A3F I; 1S72 1; 2H85 A; 2R92 I; 2VPX A; 1M1K 2; 1RO2 A; 3CXC Z; 2VUM I; 3CCE Z; 5AN9 F; 3H0G I; 2DE5 A; 3EED A; 1Z01 A; 3CCR Z; 2O4H A; 1KC8 1; 1Z02 A; 2GU2 A; 4A3E I; 5C4X I; 1L1O C; 3OW2 Z; 1KC8 2; 3S2H I; 5C3E I; 4A3C I; 2I3C A; 3BG0 B; 5C44 I; 5IP7 I; 3HOV I; 4NB9 A; 3I56 1; 3VMG A; 1YJN 1; #chains in the Genus database with same CATH homology 1QXF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
