1WJ2A

Solution structure of the c-terminal wrky domain of atwrky4
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
71
structure length
71
Chain Sequence
VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Probable WRKY transcription factor 4
publication title Solution structure of an Arabidopsis WRKY DNA binding domain.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Dna binding protein
total genus 5
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03106 WRKY WRKY DNA -binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.25.80 Mainly Beta Single Sheet N-terminal domain of TfIIb WRKY domain 1wj2A00
2AYDA 1WJ2A 2LEXA
chains in the Genus database with same CATH superfamily
1RO2A 5FLXf 2NVXI 5FLXb 3PO3S 4E2YA 1NJI2 1AA6A 3S15I 1TWCI 3NDJA 1K8A1 1K8A2 1QF8A 3IR7A 3HOXI 3CCV1 4NFRA 3J80f 3J80b 2PM9A 2JA7I 1YJN1 2RBLA 3CD61 3HOVI 1VQ61 3NH8A 3ESWA 2V45A 1YUKA 2VF1A 1X3ZA 4NBHA 4A3MI 3CCRZ 4AYBA 3I55Z 5D1OB 3CC2Z 2OOXB 3BG0B 4NBEA 3GTQI 5T6BA 3MONA 4NBFA 5A2Qf 5A2Qb 1M902 1Q861 1Q862 4QTTA 4QTUA 2YU9I 2NVTI 1Z02A 4E2WA 1I50I 3MZLB 1Y1VI 1TWHI 1N8R1 3NH5A 2F4OA 2ZAEB 1RO0A 2K5RA 3CPWZ 1YHQZ 2Y0SA 3CCR1 2V3VA 3KIFA 4HH4A 3I551 2JIQA 3GTKI 4RS4A 3CC21 3GTJI 3K7AI 1TWGI 1YUAA 2JA5I 4E2ZA 4S1TA 3IFUA 1KQSZ 4DQYB 3T4NB 4NOZA 2QRDB 4MH4A 3S2DI 4NBGA 1S72Z 5D1PA 1YHQ1 1JJ2Z 1Y1VS 3H3VJ 3RZDI 1KD12 2B63I 3S1QI 2JIPA 3S14I 4A3DI 3FKII 4BY7I 1WW9A 3QWUA 1L1OC 1S721 2QRCB 2W03A 2RT9A 3H0GI 4NBAA 2PMZA 1Z01A 2E2II 2V8IA 4HGYA 2K3RA 3CPWY 3GTLI 1VQKZ 2GU2A 4A3KI 1YJWZ 3G4SZ 2V8KA 1WJ2A 3F3PC 4NB8A 4XX2A 4EWCA 5FLMI 2WB1A 1VQ7Z 2VPYA 3CCUZ 1KQSY 1WCMI 3VMIA 2P28A 1NP6A 2GTIA 2O53A 1RQFA 3HOWI 4MXUA 1VQM1 1NJI1 1TWAI 2LFUA 1RO4A 3OW2Y 2LIYA 4A3EI 1YITZ 3RZOI 3CCE1 1JJ2Y 3HKZA 2IZ4A 2AYDA 4X6AI 5T64A 5C3EI 3G6EZ 3EEDA 4TNUA 1M1K2 1SIWA 4MONA 2E2JI 3PO2I 1K9M1 3U50C 1K9M2 1N2FA 3NFZA 2NVYI 1VQPZ 3CQZI 3CCQZ 1VQNZ 4RVGA 2QREB 1M901 3GTPI 2RPRA 3GKQA 4E32A 1USPB 3J7A4 1K83I 1PFTA 2NAPA 3CMAZ 3NH4A 3HOYI 2G2KA 1K731 3HOUI 1NUIA 3VB9A 1K732 2R93I 1R9TI 1ZH1A 2GTHA 3CXCZ 3GTMI 2NVQI 2BJOA 1Y8CA 2AKLA 4A3FI 3CCQ1 3I4MI 1VQLZ 1VQN1 2I3CA 3TDHB 2W04A 2R6MA 2IV2X 2JIRA 5IP7I 3IF8A 4RVFA 3CMA1 2OTJZ 3NDIA 1I3QI 3S2HI 3OW2Z 3JAMf 4A3LI 3CCSZ 3JAMb 3D9XA 3S17I 1KC82 1Q822 1KD11 1YI2Z 3CC4Z 1VQL1 4NH1C 3GTMS 2RIQA 3CCLZ 1QXFA 3CC7Z 4MD7A 1VQOZ 5AN9F 2OTJ1 2JNYA 2KPIA 4RV9A 3I56Z 4A3II 2PK7A 4MD8A 2JUBA 3I07A 3M3YI 3CCS1 1Q7Y2 3HOZI 1Z03A 3IX0A 3CCJZ 2E9HA 2J6AA 3CXCY 4E33A 2VPXA 2V8JA 5T67A 2YADA 3J81f 3S1RI 3CC41 1YI21 2KI7B 3J81b 3CCL1 1W2BZ 3CC71 3GTGI 2LEXA 2JIOA 3KIHA 4BBRI 2O4HA 1Q812 1VQO1 1TFIA 3MZKB 2DE5A 3VTNA 2JR6A 5C4JI 5C4XI 3Q87A 3S1NI 1YJNZ 1VQK1 5D1OA 1JWHC 1YJW1 2HU9A 2E2HI 3CD6Z 4NBCA 4DGLA 3G4S1 1Q16A 4BY1I 1ZB8A 1S7MA 1VQ71 2P3YA 1M1K1 3CCU1 2M6NA 1USPA 2JA8I 4NBBA 2QR1B 5IP9I 3FQMA 2VUGA 1FDOA 3GCFA 2QKDA 2IZ3A 1YJ9Z 3TE5B 3F3FC 4BXXI 1QVGZ 1VQ5Z 1WZNA 2QEXZ 1YIT1 1YIJZ 1VQ8Z 1I6HI 2OZKA 3G6E1 2QA4Z 4A3CI 1W2BY 2E7ZA 4BBSI 3G71Z 4Y52I 2VPWA 1TWFI 1QVFZ 3M4OI 2F4MA 2OTLZ 1YJ91 3P5JB 5CM2M 2JMOA 2Q51A 1VQP1 1VQ51 2HF1A 1DL6A 2QEX1 1VQ9Z 2OOYB 1YIJ1 1VQ81 1N8R2 2QA41 2QLVB 4NBDA 3G711 3S1MI 1WIIA 4MRIA 4DK1A 3VMGA 3CMEZ 1KRLA 4E30A 2OTL1 1KC81 1Q821 2JA6I 1VQ4Z 2DE6A 5C44I 2JIMA 4NB9A 1RLYA 2WAQA 1QVGY 3GTOI 1VQ91 1SFOI 1X0TA 4A3JI 3CCMZ 2RHBA 1ML8A 2DE7A 2M48A 4E2XA 2JS4A 1Q7Y1 3CME1 2Q4ZA 3FQQA 1X3WA 1QVFY 2R92I 2VUMI 1RNIA 4A93I 3PO3I 1VQ41 3S16I 5IT9f 2EGTA 4RVHA 5IT9b 1Y1WI 1P9NA 1VQMZ 4CL1A 4A3BI 4A3GI 1Q811 1VLAA 3EERA 1ZB9A 4RVDA 3CCM1 4MD9A 3D2LA 3I561 4Y7NI 3CCVZ 3I4NI 3CCEZ 3VMHA 1LQLA 3BG1B 3D6WA 4E31A 3CCJ1 1QYPA 2VPZA 2H85A 3LUSA 2R7ZI 1FDIA 4HGZA 5LL6f 1VQ6Z
chains in the Genus database with same CATH topology
2AYDA 1WJ2A 2LEXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AYD A;  1WJ2 A;  2LEX A; 
#chains in the Genus database with same CATH topology
 1RO2 A;  5FLX f;  2NVX I;  5FLX b;  3PO3 S;  4E2Y A;  1NJI 2;  1AA6 A;  3S15 I;  1TWC I;  3NDJ A;  1K8A 1;  1K8A 2;  1QF8 A;  3IR7 A;  3HOX I;  3CCV 1;  4NFR A;  3J80 f;  3J80 b;  2PM9 A;  2JA7 I;  1YJN 1;  2RBL A;  3CD6 1;  3HOV I;  1VQ6 1;  3NH8 A;  3ESW A;  2V45 A;  1YUK A;  2VF1 A;  1X3Z A;  4NBH A;  4A3M I;  3CCR Z;  4AYB A;  3I55 Z;  5D1O B;  3CC2 Z;  2OOX B;  3BG0 B;  4NBE A;  3GTQ I;  5T6B A;  3MON A;  4NBF A;  5A2Q f;  5A2Q b;  1M90 2;  1Q86 1;  1Q86 2;  4QTT A;  4QTU A;  2YU9 I;  2NVT I;  1Z02 A;  4E2W A;  1I50 I;  3MZL B;  1Y1V I;  1TWH I;  1N8R 1;  3NH5 A;  2F4O A;  2ZAE B;  1RO0 A;  2K5R A;  3CPW Z;  1YHQ Z;  2Y0S A;  3CCR 1;  2V3V A;  3KIF A;  4HH4 A;  3I55 1;  2JIQ A;  3GTK I;  4RS4 A;  3CC2 1;  3GTJ I;  3K7A I;  1TWG I;  1YUA A;  2JA5 I;  4E2Z A;  4S1T A;  3IFU A;  1KQS Z;  4DQY B;  3T4N B;  4NOZ A;  2QRD B;  4MH4 A;  3S2D I;  4NBG A;  1S72 Z;  5D1P A;  1YHQ 1;  1JJ2 Z;  1Y1V S;  3H3V J;  3RZD I;  1KD1 2;  2B63 I;  3S1Q I;  2JIP A;  3S14 I;  4A3D I;  3FKI I;  4BY7 I;  1WW9 A;  3QWU A;  1L1O C;  1S72 1;  2QRC B;  2W03 A;  2RT9 A;  3H0G I;  4NBA A;  2PMZ A;  1Z01 A;  2E2I I;  2V8I A;  4HGY A;  2K3R A;  3CPW Y;  3GTL I;  1VQK Z;  2GU2 A;  4A3K I;  1YJW Z;  3G4S Z;  2V8K A;  1WJ2 A;  3F3P C;  4NB8 A;  4XX2 A;  4EWC A;  5FLM I;  2WB1 A;  1VQ7 Z;  2VPY A;  3CCU Z;  1KQS Y;  1WCM I;  3VMI A;  2P28 A;  1NP6 A;  2GTI A;  2O53 A;  1RQF A;  3HOW I;  4MXU A;  1VQM 1;  1NJI 1;  1TWA I;  2LFU A;  1RO4 A;  3OW2 Y;  2LIY A;  4A3E I;  1YIT Z;  3RZO I;  3CCE 1;  1JJ2 Y;  3HKZ A;  2IZ4 A;  2AYD A;  4X6A I;  5T64 A;  5C3E I;  3G6E Z;  3EED A;  4TNU A;  1M1K 2;  1SIW A;  4MON A;  2E2J I;  3PO2 I;  1K9M 1;  3U50 C;  1K9M 2;  1N2F A;  3NFZ A;  2NVY I;  1VQP Z;  3CQZ I;  3CCQ Z;  1VQN Z;  4RVG A;  2QRE B;  1M90 1;  3GTP I;  2RPR A;  3GKQ A;  4E32 A;  1USP B;  3J7A 4;  1K83 I;  1PFT A;  2NAP A;  3CMA Z;  3NH4 A;  3HOY I;  2G2K A;  1K73 1;  3HOU I;  1NUI A;  3VB9 A;  1K73 2;  2R93 I;  1R9T I;  1ZH1 A;  2GTH A;  3CXC Z;  3GTM I;  2NVQ I;  2BJO A;  1Y8C A;  2AKL A;  4A3F I;  3CCQ 1;  3I4M I;  1VQL Z;  1VQN 1;  2I3C A;  3TDH B;  2W04 A;  2R6M A;  2IV2 X;  2JIR A;  5IP7 I;  3IF8 A;  4RVF A;  3CMA 1;  2OTJ Z;  3NDI A;  1I3Q I;  3S2H I;  3OW2 Z;  3JAM f;  4A3L I;  3CCS Z;  3JAM b;  3D9X A;  3S17 I;  1KC8 2;  1Q82 2;  1KD1 1;  1YI2 Z;  3CC4 Z;  1VQL 1;  4NH1 C;  3GTM S;  2RIQ A;  3CCL Z;  1QXF A;  3CC7 Z;  4MD7 A;  1VQO Z;  5AN9 F;  2OTJ 1;  2JNY A;  2KPI A;  4RV9 A;  3I56 Z;  4A3I I;  2PK7 A;  4MD8 A;  2JUB A;  3I07 A;  3M3Y I;  3CCS 1;  1Q7Y 2;  3HOZ I;  1Z03 A;  3IX0 A;  3CCJ Z;  2E9H A;  2J6A A;  3CXC Y;  4E33 A;  2VPX A;  2V8J A;  5T67 A;  2YAD A;  3J81 f;  3S1R I;  3CC4 1;  1YI2 1;  2KI7 B;  3J81 b;  3CCL 1;  1W2B Z;  3CC7 1;  3GTG I;  2LEX A;  2JIO A;  3KIH A;  4BBR I;  2O4H A;  1Q81 2;  1VQO 1;  1TFI A;  3MZK B;  2DE5 A;  3VTN A;  2JR6 A;  5C4J I;  5C4X I;  3Q87 A;  3S1N I;  1YJN Z;  1VQK 1;  5D1O A;  1JWH C;  1YJW 1;  2HU9 A;  2E2H I;  3CD6 Z;  4NBC A;  4DGL A;  3G4S 1;  1Q16 A;  4BY1 I;  1ZB8 A;  1S7M A;  1VQ7 1;  2P3Y A;  1M1K 1;  3CCU 1;  2M6N A;  1USP A;  2JA8 I;  4NBB A;  2QR1 B;  5IP9 I;  3FQM A;  2VUG A;  1FDO A;  3GCF A;  2QKD A;  2IZ3 A;  1YJ9 Z;  3TE5 B;  3F3F C;  4BXX I;  1QVG Z;  1VQ5 Z;  1WZN A;  2QEX Z;  1YIT 1;  1YIJ Z;  1VQ8 Z;  1I6H I;  2OZK A;  3G6E 1;  2QA4 Z;  4A3C I;  1W2B Y;  2E7Z A;  4BBS I;  3G71 Z;  4Y52 I;  2VPW A;  1TWF I;  1QVF Z;  3M4O I;  2F4M A;  2OTL Z;  1YJ9 1;  3P5J B;  5CM2 M;  2JMO A;  2Q51 A;  1VQP 1;  1VQ5 1;  2HF1 A;  1DL6 A;  2QEX 1;  1VQ9 Z;  2OOY B;  1YIJ 1;  1VQ8 1;  1N8R 2;  2QA4 1;  2QLV B;  4NBD A;  3G71 1;  3S1M I;  1WII A;  4MRI A;  4DK1 A;  3VMG A;  3CME Z;  1KRL A;  4E30 A;  2OTL 1;  1KC8 1;  1Q82 1;  2JA6 I;  1VQ4 Z;  2DE6 A;  5C44 I;  2JIM A;  4NB9 A;  1RLY A;  2WAQ A;  1QVG Y;  3GTO I;  1VQ9 1;  1SFO I;  1X0T A;  4A3J I;  3CCM Z;  2RHB A;  1ML8 A;  2DE7 A;  2M48 A;  4E2X A;  2JS4 A;  1Q7Y 1;  3CME 1;  2Q4Z A;  3FQQ A;  1X3W A;  1QVF Y;  2R92 I;  2VUM I;  1RNI A;  4A93 I;  3PO3 I;  1VQ4 1;  3S16 I;  5IT9 f;  2EGT A;  4RVH A;  5IT9 b;  1Y1W I;  1P9N A;  1VQM Z;  4CL1 A;  4A3B I;  4A3G I;  1Q81 1;  1VLA A;  3EER A;  1ZB9 A;  4RVD A;  3CCM 1;  4MD9 A;  3D2L A;  3I56 1;  4Y7N I;  3CCV Z;  3I4N I;  3CCE Z;  3VMH A;  1LQL A;  3BG1 B;  3D6W A;  4E31 A;  3CCJ 1;  1QYP A;  2VPZ A;  2H85 A;  3LUS A;  2R7Z I;  1FDI A;  4HGZ A;  5LL6 f;  1VQ6 Z; 
#chains in the Genus database with same CATH homology
 2AYD A;  1WJ2 A;  2LEX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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