1WJ2A

Solution structure of the c-terminal wrky domain of atwrky4
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
71
structure length
71
Chain Sequence
VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
source organism Arabidopsis thaliana
publication title Solution structure of an Arabidopsis WRKY DNA binding domain.
pubmed doi rcsb
molecule keywords Probable WRKY transcription factor 4
total genus 5
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03106 WRKY WRKY DNA -binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.25.80 Mainly Beta Single Sheet N-terminal domain of TfIIb WRKY domain 1wj2A00
2LEXA 1WJ2A 2AYDA
chains in the Genus database with same CATH superfamily
2J6AA 3HOXI 3KIFA 2F4MA 1Q811 3CCQ1 1WJ2A 1YJW1 1VQNZ 2DE6A 3K7AI 1Z03A 1VQLZ 3J81b 1TWGI 2R93I 2NVXI 3NDIA 5T67A 2M6NA 1I50I 2KPIA 1VQ51 1YIJ1 4MXUA 3I07A 4DK1A 4NFRA 3GTPI 2WB1A 5A2Qb 2RBLA 3GCFA 2O53A 2JS4A 2R92I 3ESWA 1I3QI 4QTUA 1QVGZ 3CCM1 4E2ZA 1KQSZ 2V3VA 1X3WA 1WIIA 1W2BZ 1S7MA 2VPYA 3CC41 4A3LI 3JAMb 3D2LA 2BJOA 4BY1I 4RVGA 2NVYI 1M902 1K9M2 1YUKA 3CCL1 3HKZA 4DGLA 3IF8A 2QA41 1VQ7Z 3F3FC 3CCV1 1Q862 2JIRA 5C4XI 4XX2A 2JA6I 3GTQI 5IT9b 2Q4ZA 3CQZI 2LIYA 3F3PC 3CCE1 1N8R1 2NVTI 4HGZA 2DE7A 1WW9A 2GU2A 3CMA1 2NAPA 2OTJ1 1N2FA 1L1OC 1Q7Y2 3G71Z 3VMHA 1YI2Z 3PO3I 1VQ61 3I4NI 3NH4A 1YJN1 4TNUA 1YIT1 2PM9A 4E2YA 1WCMI 3BG1B 3MONA 3G4S1 3S2DI 3CC2Z 2R6MA 3PO3S 3P5JB 4CL1A 1DL6A 4BXXI 1S72Z 3GTJI 1KC82 3M3YI 4A3GI 1JJ2Y 3CC71 1NJI2 3S17I 1ZB9A 5T64A 4AYBA 1YHQ1 2JIMA 4RVDA 1VQP1 3CME1 2ZAEB 1VQM1 4S1TA 2V8KA 3J7A4 4RVFA 4MD7A 4HH4A 2NVQI 5C3EI 3I561 4NBGA 3S1MI 3VMIA 2OTL1 3H0GI 5D1OB 5FLXb 3KIHA 5AN9F 4E32A 2Q51A 2OOXB 4NBEA 1K8A2 3Q87A 1KD12 2OZKA 3QWUA 4NH1C 1VQ81 2WAQA 5FLMI 3I551 1I6HI 3GKQA 1K83I 3IFUA 4BY7I 2AKLA 3VB9A 4BBRI 2E2HI 2HU9A 4BBSI 1K731 2OOYB 1M901 1K9M1 3CCQZ 2QEX1 1YJWZ 3IR7A 3J81f 4E2XA 1Q821 1VQ91 5C44I 3TE5B 1RO4A 1TWFI 2W03A 3CCJ1 1VQ5Z 4DQYB 1YIJZ 3NFZA 1USPA 1ML8A 1QF8A 2I3CA 1M1K2 2IZ4A 3FQQA 1NP6A 2VPWA 2IZ3A 4RV9A 1Q812 4A3MI 2E7ZA 3S2HI 4RVHA 3CCMZ 1VQK1 4HGYA 1R9TI 4E30A 3I4MI 3JAMf 3CC4Z 1NUIA 2RIQA 3T4NB 2QR1B 3BG0B 4E33A 3S1NI 1QXFA 4A3KI 3CCLZ 3CXCY 2QA4Z 5IT9f 3CCVZ 2G2KA 2P3YA 3S1QI 4A3DI 2VF1A 1Z01A 4MONA 2IV2X 3CCU1 1SIWA 3G6E1 2RHBA 5C4JI 3PO2I 3HOZI 3CCEZ 2JIOA 3CMAZ 1VQO1 2V8IA 2OTJZ 2V8JA 2LEXA 2JMOA 5LL6f 1Q16A 3CCS1 1VQ6Z 2O4HA 3CCR1 1FDIA 2VPZA 4NBAA 3CPWY 1YJNZ 1QVFY 1YITZ 1QYPA 2H85A 2JNYA 4NBBA 2QRCB 4A3JI 3G4SZ 3J80b 4NB9A 3HOYI 1TWCI 1Y1WI 1VQ41 2EGTA 1YJ91 3CD61 3CC7Z 1VLAA 2K3RA 4Y52I 3D9XA 3FKII 2P28A 3CXCZ 1YHQZ 4A93I 5IP9I 2DE5A 1ZB8A 3NDJA 1VQPZ 3CMEZ 2VPXA 1VQMZ 1KQSY 2QLVB 1VQN1 3I56Z 4NBDA 1VQL1 2OTLZ 5FLXf 2W04A 3RZOI 3GTOI 2JIQA 2E2II 1QVFZ 1JJ2Z 3CPWZ 4A3FI 2R7ZI 2JA5I 1VQ8Z 2VUMI 3MZKB 3I55Z 1RLYA 2YU9I 1WZNA 1Q861 3EEDA 3S15I 3S16I 2RPRA 1FDOA 1KRLA 3TDHB 3HOWI 1RNIA 4NBHA 3U50C 2JA7I 4EWCA 1X3ZA 3NH8A 2K5RA 4A3EI 4NB8A 3HOUI 2QEXZ 5A2Qf 1RO2A 3D6WA 4MD8A 2JUBA 5D1PA 1VQ9Z 2JR6A 3EERA 4QTTA 1Q7Y1 3FQMA 4NOZA 5CM2M 3LUSA 2B63I 1AA6A 4E31A 2GTIA 2LFUA 2M48A 1USPB 1VQ71 2VUGA 3M4OI 3CCJZ 1PFTA 4A3BI 3OW2Y 2PK7A 3VTNA 1KC81 2JIPA 1K732 1TWHI 2E2JI 4Y7NI 1NJI1 3MZLB 1Q822 1VQKZ 3G711 1RQFA 1YI21 2E9HA 1Y1VI 4NBFA 1TFIA 3CC21 1JWHC 4NBCA 3H3VJ 3HOVI 1Y1VS 2HF1A 5T6BA 2PMZA 2RT9A 3IX0A 1SFOI 2JA8I 1S721 3NH5A 1P9NA 1K8A1 3GTLI 3CCUZ 3G6EZ 4MD9A 1X0TA 2F4OA 4MH4A 4A3II 3GTMI 1KD11 1YUAA 1LQLA 1VQOZ 2QREB 1Z02A 3OW2Z 1N8R2 4E2WA 3GTMS 2KI7B 3CCSZ 3CCRZ 3J80f 2GTHA 4X6AI 4RS4A 2YADA 5IP7I 1TWAI 1Y8CA 1ZH1A 5D1OA 3GTGI 3VMGA 2V45A 1QVGY 1VQ4Z 3S14I 2Y0SA 4A3CI 1W2BY 2AYDA 4MRIA 2QRDB 1YJ9Z 3CD6Z 3S1RI 1RO0A 3GTKI 2QKDA 1M1K1 3RZDI
chains in the Genus database with same CATH topology
2LEXA 1WJ2A 2AYDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LEX A;  1WJ2 A;  2AYD A; 
#chains in the Genus database with same CATH topology
 2J6A A;  3HOX I;  3KIF A;  2F4M A;  1Q81 1;  3CCQ 1;  1WJ2 A;  1YJW 1;  1VQN Z;  2DE6 A;  3K7A I;  1Z03 A;  1VQL Z;  3J81 b;  1TWG I;  2R93 I;  2NVX I;  3NDI A;  5T67 A;  2M6N A;  1I50 I;  2KPI A;  1VQ5 1;  1YIJ 1;  4MXU A;  3I07 A;  4DK1 A;  4NFR A;  3GTP I;  2WB1 A;  5A2Q b;  2RBL A;  3GCF A;  2O53 A;  2JS4 A;  2R92 I;  3ESW A;  1I3Q I;  4QTU A;  1QVG Z;  3CCM 1;  4E2Z A;  1KQS Z;  2V3V A;  1X3W A;  1WII A;  1W2B Z;  1S7M A;  2VPY A;  3CC4 1;  4A3L I;  3JAM b;  3D2L A;  2BJO A;  4BY1 I;  4RVG A;  2NVY I;  1M90 2;  1K9M 2;  1YUK A;  3CCL 1;  3HKZ A;  4DGL A;  3IF8 A;  2QA4 1;  1VQ7 Z;  3F3F C;  3CCV 1;  1Q86 2;  2JIR A;  5C4X I;  4XX2 A;  2JA6 I;  3GTQ I;  5IT9 b;  2Q4Z A;  3CQZ I;  2LIY A;  3F3P C;  3CCE 1;  1N8R 1;  2NVT I;  4HGZ A;  2DE7 A;  1WW9 A;  2GU2 A;  3CMA 1;  2NAP A;  2OTJ 1;  1N2F A;  1L1O C;  1Q7Y 2;  3G71 Z;  3VMH A;  1YI2 Z;  3PO3 I;  1VQ6 1;  3I4N I;  3NH4 A;  1YJN 1;  4TNU A;  1YIT 1;  2PM9 A;  4E2Y A;  1WCM I;  3BG1 B;  3MON A;  3G4S 1;  3S2D I;  3CC2 Z;  2R6M A;  3PO3 S;  3P5J B;  4CL1 A;  1DL6 A;  4BXX I;  1S72 Z;  3GTJ I;  1KC8 2;  3M3Y I;  4A3G I;  1JJ2 Y;  3CC7 1;  1NJI 2;  3S17 I;  1ZB9 A;  5T64 A;  4AYB A;  1YHQ 1;  2JIM A;  4RVD A;  1VQP 1;  3CME 1;  2ZAE B;  1VQM 1;  4S1T A;  2V8K A;  3J7A 4;  4RVF A;  4MD7 A;  4HH4 A;  2NVQ I;  5C3E I;  3I56 1;  4NBG A;  3S1M I;  3VMI A;  2OTL 1;  3H0G I;  5D1O B;  5FLX b;  3KIH A;  5AN9 F;  4E32 A;  2Q51 A;  2OOX B;  4NBE A;  1K8A 2;  3Q87 A;  1KD1 2;  2OZK A;  3QWU A;  4NH1 C;  1VQ8 1;  2WAQ A;  5FLM I;  3I55 1;  1I6H I;  3GKQ A;  1K83 I;  3IFU A;  4BY7 I;  2AKL A;  3VB9 A;  4BBR I;  2E2H I;  2HU9 A;  4BBS I;  1K73 1;  2OOY B;  1M90 1;  1K9M 1;  3CCQ Z;  2QEX 1;  1YJW Z;  3IR7 A;  3J81 f;  4E2X A;  1Q82 1;  1VQ9 1;  5C44 I;  3TE5 B;  1RO4 A;  1TWF I;  2W03 A;  3CCJ 1;  1VQ5 Z;  4DQY B;  1YIJ Z;  3NFZ A;  1USP A;  1ML8 A;  1QF8 A;  2I3C A;  1M1K 2;  2IZ4 A;  3FQQ A;  1NP6 A;  2VPW A;  2IZ3 A;  4RV9 A;  1Q81 2;  4A3M I;  2E7Z A;  3S2H I;  4RVH A;  3CCM Z;  1VQK 1;  4HGY A;  1R9T I;  4E30 A;  3I4M I;  3JAM f;  3CC4 Z;  1NUI A;  2RIQ A;  3T4N B;  2QR1 B;  3BG0 B;  4E33 A;  3S1N I;  1QXF A;  4A3K I;  3CCL Z;  3CXC Y;  2QA4 Z;  5IT9 f;  3CCV Z;  2G2K A;  2P3Y A;  3S1Q I;  4A3D I;  2VF1 A;  1Z01 A;  4MON A;  2IV2 X;  3CCU 1;  1SIW A;  3G6E 1;  2RHB A;  5C4J I;  3PO2 I;  3HOZ I;  3CCE Z;  2JIO A;  3CMA Z;  1VQO 1;  2V8I A;  2OTJ Z;  2V8J A;  2LEX A;  2JMO A;  5LL6 f;  1Q16 A;  3CCS 1;  1VQ6 Z;  2O4H A;  3CCR 1;  1FDI A;  2VPZ A;  4NBA A;  3CPW Y;  1YJN Z;  1QVF Y;  1YIT Z;  1QYP A;  2H85 A;  2JNY A;  4NBB A;  2QRC B;  4A3J I;  3G4S Z;  3J80 b;  4NB9 A;  3HOY I;  1TWC I;  1Y1W I;  1VQ4 1;  2EGT A;  1YJ9 1;  3CD6 1;  3CC7 Z;  1VLA A;  2K3R A;  4Y52 I;  3D9X A;  3FKI I;  2P28 A;  3CXC Z;  1YHQ Z;  4A93 I;  5IP9 I;  2DE5 A;  1ZB8 A;  3NDJ A;  1VQP Z;  3CME Z;  2VPX A;  1VQM Z;  1KQS Y;  2QLV B;  1VQN 1;  3I56 Z;  4NBD A;  1VQL 1;  2OTL Z;  5FLX f;  2W04 A;  3RZO I;  3GTO I;  2JIQ A;  2E2I I;  1QVF Z;  1JJ2 Z;  3CPW Z;  4A3F I;  2R7Z I;  2JA5 I;  1VQ8 Z;  2VUM I;  3MZK B;  3I55 Z;  1RLY A;  2YU9 I;  1WZN A;  1Q86 1;  3EED A;  3S15 I;  3S16 I;  2RPR A;  1FDO A;  1KRL A;  3TDH B;  3HOW I;  1RNI A;  4NBH A;  3U50 C;  2JA7 I;  4EWC A;  1X3Z A;  3NH8 A;  2K5R A;  4A3E I;  4NB8 A;  3HOU I;  2QEX Z;  5A2Q f;  1RO2 A;  3D6W A;  4MD8 A;  2JUB A;  5D1P A;  1VQ9 Z;  2JR6 A;  3EER A;  4QTT A;  1Q7Y 1;  3FQM A;  4NOZ A;  5CM2 M;  3LUS A;  2B63 I;  1AA6 A;  4E31 A;  2GTI A;  2LFU A;  2M48 A;  1USP B;  1VQ7 1;  2VUG A;  3M4O I;  3CCJ Z;  1PFT A;  4A3B I;  3OW2 Y;  2PK7 A;  3VTN A;  1KC8 1;  2JIP A;  1K73 2;  1TWH I;  2E2J I;  4Y7N I;  1NJI 1;  3MZL B;  1Q82 2;  1VQK Z;  3G71 1;  1RQF A;  1YI2 1;  2E9H A;  1Y1V I;  4NBF A;  1TFI A;  3CC2 1;  1JWH C;  4NBC A;  3H3V J;  3HOV I;  1Y1V S;  2HF1 A;  5T6B A;  2PMZ A;  2RT9 A;  3IX0 A;  1SFO I;  2JA8 I;  1S72 1;  3NH5 A;  1P9N A;  1K8A 1;  3GTL I;  3CCU Z;  3G6E Z;  4MD9 A;  1X0T A;  2F4O A;  4MH4 A;  4A3I I;  3GTM I;  1KD1 1;  1YUA A;  1LQL A;  1VQO Z;  2QRE B;  1Z02 A;  3OW2 Z;  1N8R 2;  4E2W A;  3GTM S;  2KI7 B;  3CCS Z;  3CCR Z;  3J80 f;  2GTH A;  4X6A I;  4RS4 A;  2YAD A;  5IP7 I;  1TWA I;  1Y8C A;  1ZH1 A;  5D1O A;  3GTG I;  3VMG A;  2V45 A;  1QVG Y;  1VQ4 Z;  3S14 I;  2Y0S A;  4A3C I;  1W2B Y;  2AYD A;  4MRI A;  2QRD B;  1YJ9 Z;  3CD6 Z;  3S1R I;  1RO0 A;  3GTK I;  2QKD A;  1M1K 1;  3RZD I; 
#chains in the Genus database with same CATH homology
 2LEX A;  1WJ2 A;  2AYD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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