The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
46
|
sequence length |
201
|
structure length |
201
|
Chain Sequence |
VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAASNF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Active Form of the Protein Kinase CK2 alpha 2 beta 2 Holoenzyme Is a Strong Complex with Symmetric Architecture.
pubmed doi rcsb |
| molecule keywords |
Casein kinase II subunit beta
|
| molecule tags |
Transferase
|
| source organism |
Homo sapiens
|
| total genus |
46
|
| structure length |
201
|
| sequence length |
201
|
| chains with identical sequence |
B, C, D, I, J, N, O
|
| ec nomenclature | |
| pdb deposition date | 2013-08-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01214 | CK_II_beta | Casein kinase II regulatory subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | protein kinase ck2 holoenzyme, chain C, domain 1 | protein kinase ck2 holoenzyme, chain C, domain 1 | ||
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb |
#chains in the Genus database with same CATH superfamily 2M6N A; 1RQF A; 2JMO A; 2RT9 A; 1JWH C; 1QF8 A; 3EED A; 4MD7 A; 4MD8 A; 2M48 A; 2R6M A; 4MD9 A; 4NH1 C; 4DGL A; #chains in the Genus database with same CATH topology 3H0G I; 5D1O A; 3I55 1; 1W2B Z; 4X6A I; 3D6W A; 5D1P A; 1VQN Z; 3MZL B; 4HH4 A; 1YHQ 1; 4QTU A; 4EWC A; 3I55 Z; 3CCL 1; 2OOY B; 2QRD B; 4MH4 A; 5LL6 f; 1YHQ Z; 1YJN 1; 1K73 1; 2Q51 A; 1Q81 2; 4NFR A; 3F3P C; 3CCL Z; 2JIR A; 2WB1 A; 1NUI A; 1ML8 A; 3PO3 I; 5FLM I; 1Q16 A; 1YJN Z; 2QRE B; 4S1T A; 2OZK A; 4MRI A; 4NBG A; 3IX0 A; 1YUA A; 1N2F A; 2W03 A; 2VF1 A; 3G71 1; 2QEX Z; 2JA5 I; 4A3G I; 3CCV 1; 4E31 A; 2E9H A; 4A93 I; 2VPW A; 3KIH A; 3F3F C; 2QA4 1; 2JIO A; 4A3I I; 2R93 I; 3NH4 A; 3GTL I; 3TE5 B; 3G71 Z; 3CXC Z; 2HF1 A; 1LQL A; 4MD9 A; 2QA4 Z; 1N8R 1; 4RVG A; 5C4X I; 1AA6 A; 4E33 A; 3QWU A; 2OTL 1; 2WAQ A; 2V8I A; 1Z03 A; 2QKD A; 1Q81 1; 4NBA A; 5C4J I; 2OTL Z; 1QVG Z; 5CM2 M; 3I4M I; 2R92 I; 2DE6 A; 3CCM 1; 5T6B A; 2LIY A; 1QVF Y; 2KI7 B; 3CC4 1; 1VQ7 1; 5C3E I; 2J6A A; 1M1K 2; 3CCM Z; 3CQZ I; 3NDJ A; 2JA6 I; 5IT9 f; 2R7Z I; 1NJI 1; 3I56 1; 3JAM b; 3PO3 S; 2PK7 A; 3CC4 Z; 1VQ7 Z; 3FQM A; 1SFO I; 1ZH1 A; 1QF8 A; 3PO2 I; 2K3R A; 3CD6 1; 4MD8 A; 2VPY A; 3I56 Z; 2RIQ A; 2OTJ 1; 1TWA I; 1JWH C; 1YUK A; 1JJ2 Y; 1R9T I; 4NOZ A; 3CD6 Z; 3J80 f; 2JR6 A; 3FQQ A; 4NB8 A; 1KC8 1; 2OTJ Z; 4XX2 A; 2HU9 A; 3HOY I; 3EER A; 2JA8 I; 2H85 A; 4CL1 A; 4Y7N I; 1YIJ 1; 4NBD A; 1VQM 1; 2RHB A; 1VQ9 1; 5FLX f; 3CC7 Z; 3CCE Z; 1QVF Z; 5A2Q b; 3J81 f; 2JIQ A; 1YIJ Z; 2LEX A; 3J80 b; 1VQ5 1; 3S17 I; 1VQM Z; 4DGL A; 2AYD A; 1VQ9 Z; 2YAD A; 1VQO 1; 3HOV I; 3EED A; 4E2X A; 5C44 I; 1L1O C; 1M1K 1; 1I6H I; 1TWC I; 1ZB9 A; 1WJ2 A; 3GTM S; 1RNI A; 1K8A 1; 1VQO Z; 5FLX b; 1JJ2 Z; 1VQ6 1; 3HKZ A; 1K9M 2; 3MON A; 2GTH A; 2E2I I; 2NVT I; 1VQ6 Z; 4AYB A; 1RLY A; 2NVY I; 4NB9 A; 3GTJ I; 2E7Z A; 2M48 A; 1KRL A; 2Q4Z A; 4A3D I; 3VMH A; 3NH8 A; 3D2L A; 3CCV Z; 2JIM A; 1QYP A; 4E2Y A; 4A3E I; 2RT9 A; 2V3V A; 1DL6 A; 2F4M A; 4E32 A; 4MXU A; 1VQ8 1; 2E2J I; 1P9N A; 3ESW A; 2JNY A; 2LFU A; 2O4H A; 4NBB A; 4RV9 A; 3RZD I; 2B63 I; 2AKL A; 3S1Q I; 4BY7 I; 2JUB A; 2VPZ A; 2Y0S A; 1VQ8 Z; 4A3M I; 3P5J B; 2JS4 A; 1FDO A; 3GTM I; 1PFT A; 2V8J A; 2QR1 B; 2DE5 A; 3KIF A; 2P3Y A; 5IP7 I; 1Q7Y 2; 3IFU A; 3GTP I; 3S15 I; 3VB9 A; 3S2D I; 4BBS I; 2NAP A; 3NDI A; 3CCQ 1; 1VQL 1; 1KQS Y; 3CC2 1; 1Q86 2; 1VQK 1; 4A3C I; 3NH5 A; 2K5R A; 1S7M A; 2QLV B; 3CCQ Z; 1RO0 A; 1VQL Z; 3CC2 Z; 4DQY B; 4RVH A; 1VQK Z; 3S14 I; 3G4S 1; 1K83 I; 5IT9 b; 1K73 2; 3HOU I; 1X3Z A; 4A3J I; 2JIP A; 1Z02 A; 1TFI A; 3GKQ A; 1I3Q I; 3LUS A; 1S72 1; 1RO4 A; 3GTO I; 4Y52 I; 3GTQ I; 3CCJ 1; 4NBF A; 3J7A 4; 1VQ4 1; 1NP6 A; 3S2H I; 1USP B; 2RBL A; 1YJW 1; 2GTI A; 1FDI A; 3I4N I; 3CCJ Z; 4BBR I; 4BY1 I; 5T67 A; 1KQS Z; 3MZK B; 1VQ4 Z; 2PMZ A; 3HOZ I; 4TNU A; 1TWF I; 2NVX I; 1YJW Z; 3G6E 1; 1VQ5 Z; 2W04 A; 4NBC A; 3RZO I; 1YJ9 1; 1YI2 1; 1N8R 2; 1Q86 1; 2JA7 I; 2GU2 A; 1X0T A; 4MON A; 1TWH I; 3J81 b; 3VMI A; 3G6E Z; 3CXC Y; 5D1O B; 2KPI A; 2IZ4 A; 1YJ9 Z; 1YI2 Z; 3CPW Y; 2M6N A; 3U50 C; 4MD7 A; 1YIT 1; 4NH1 C; 1RO2 A; 3OW2 Y; 3IR7 A; 1Y1V S; 4RVD A; 2JMO A; 3TDH B; 4A3B I; 3H3V J; 4A3F I; 1YIT Z; 1WCM I; 2QEX 1; 1QVG Y; 3IF8 A; 1RQF A; 2V8K A; 1M90 2; 3CMA 1; 2G2K A; 3BG0 B; 4NBH A; 3CME 1; 5AN9 F; 4E2Z A; 2NVQ I; 1Q82 2; 1I50 I; 4NBE A; 4RVF A; 3NFZ A; 1NJI 2; 3GTK I; 1Y1W I; 3CMA Z; 4QTT A; 3S1M I; 3BG1 B; 1Z01 A; 3CME Z; 1WZN A; 1ZB8 A; 1X3W A; 1TWG I; 3CCR 1; 1KD1 2; 5T64 A; 1WII A; 3CPW Z; 2PM9 A; 3CCS 1; 3CCR Z; 2V45 A; 4E30 A; 3VTN A; 1K9M 1; 1KC8 2; 3OW2 Z; 2RPR A; 1WW9 A; 1QXF A; 3CCS Z; 4E2W A; 2IV2 X; 2VUM I; 3VMG A; 2VPX A; 1SIW A; 1VQP 1; 3JAM f; 3S1N I; 1Y1V I; 3FKI I; 1Y8C A; 3HOX I; 2O53 A; 1VQP Z; 2F4O A; 2I3C A; 1W2B Y; 1M90 1; 2R6M A; 2E2H I; 3HOW I; 3CCU 1; 4DK1 A; 1Q82 1; 2OOX B; 3T4N B; 3I07 A; 2YU9 I; 1K8A 2; 3S1R I; 4HGY A; 2DE7 A; 3CCU Z; 3S16 I; 2P28 A; 2VUG A; 3G4S Z; 1KD1 1; 4A3L I; 4BXX I; 1USP A; 3GTG I; 3Q87 A; 3D9X A; 3M3Y I; 5A2Q f; 4A3K I; 5IP9 I; 1VLA A; 1S72 Z; 2ZAE B; 2BJO A; 4HGZ A; 1Q7Y 1; 3K7A I; 3M4O I; 4RS4 A; 2EGT A; 3CC7 1; 3CCE 1; 2QRC B; 3GCF A; 1VQN 1; 2IZ3 A; #chains in the Genus database with same CATH homology 3H0G I; 5D1O A; 3I55 1; 1W2B Z; 4X6A I; 3D6W A; 5D1P A; 1VQN Z; 3MZL B; 4HH4 A; 1YHQ 1; 4QTU A; 4EWC A; 3I55 Z; 3CCL 1; 2OOY B; 2QRD B; 4MH4 A; 5LL6 f; 1YHQ Z; 1YJN 1; 1K73 1; 2Q51 A; 1Q81 2; 4NFR A; 3F3P C; 3CCL Z; 2WB1 A; 1NUI A; 1ML8 A; 3PO3 I; 5FLM I; 1YJN Z; 2QRE B; 4S1T A; 2OZK A; 4MRI A; 4NBG A; 3IX0 A; 1YUA A; 1N2F A; 2W03 A; 2VF1 A; 3G71 1; 2QEX Z; 2JA5 I; 4A3G I; 3CCV 1; 4E31 A; 2E9H A; 4A93 I; 3KIH A; 3F3F C; 2QA4 1; 4A3I I; 2R93 I; 3NH4 A; 3GTL I; 3TE5 B; 3G71 Z; 3CXC Z; 2HF1 A; 1LQL A; 4MD9 A; 2QA4 Z; 1N8R 1; 4RVG A; 5C4X I; 4E33 A; 3QWU A; 2OTL 1; 2WAQ A; 2V8I A; 1Z03 A; 2QKD A; 1Q81 1; 4NBA A; 5C4J I; 2OTL Z; 1QVG Z; 5CM2 M; 3I4M I; 2R92 I; 2DE6 A; 3CCM 1; 5T6B A; 2LIY A; 1QVF Y; 2KI7 B; 3CC4 1; 1VQ7 1; 5C3E I; 2J6A A; 1M1K 2; 3CCM Z; 3CQZ I; 3NDJ A; 2JA6 I; 5IT9 f; 2R7Z I; 1NJI 1; 3I56 1; 3JAM b; 3PO3 S; 2PK7 A; 3CC4 Z; 1VQ7 Z; 3FQM A; 1SFO I; 1ZH1 A; 1QF8 A; 3PO2 I; 2K3R A; 3CD6 1; 4MD8 A; 3I56 Z; 2RIQ A; 2OTJ 1; 1TWA I; 1JWH C; 1YUK A; 1JJ2 Y; 1R9T I; 4NOZ A; 3CD6 Z; 3J80 f; 2JR6 A; 3FQQ A; 4NB8 A; 1KC8 1; 2OTJ Z; 4XX2 A; 2HU9 A; 3HOY I; 3EER A; 2JA8 I; 2H85 A; 4CL1 A; 4Y7N I; 1YIJ 1; 4NBD A; 1VQM 1; 2RHB A; 1VQ9 1; 5FLX f; 3CC7 Z; 3CCE Z; 1QVF Z; 5A2Q b; 3J81 f; 1YIJ Z; 3S17 I; 3J80 b; 1VQ5 1; 1VQM Z; 4DGL A; 1VQ9 Z; 2YAD A; 1VQO 1; 3HOV I; 3EED A; 4E2X A; 5C44 I; 1L1O C; 1M1K 1; 1I6H I; 1TWC I; 1ZB9 A; 3GTM S; 1RNI A; 1K8A 1; 1VQO Z; 5FLX b; 1JJ2 Z; 1VQ6 1; 3HKZ A; 1K9M 2; 3MON A; 2GTH A; 2E2I I; 2NVT I; 1VQ6 Z; 4AYB A; 1RLY A; 2NVY I; 4NB9 A; 3GTJ I; 2M48 A; 1KRL A; 2Q4Z A; 4A3D I; 3VMH A; 3NH8 A; 3CCV Z; 1QYP A; 4E2Y A; 4A3E I; 2RT9 A; 1DL6 A; 2F4M A; 4E32 A; 4MXU A; 1VQ8 1; 2E2J I; 1P9N A; 3ESW A; 2JNY A; 2LFU A; 3RZD I; 2O4H A; 4NBB A; 4RV9 A; 2B63 I; 2AKL A; 3S1Q I; 4BY7 I; 2JUB A; 2Y0S A; 1VQ8 Z; 4A3M I; 3P5J B; 2JS4 A; 3GTM I; 1PFT A; 2V8J A; 2QR1 B; 2DE5 A; 3KIF A; 2P3Y A; 5IP7 I; 1Q7Y 2; 3IFU A; 3GTP I; 3S15 I; 3VB9 A; 3S2D I; 4BBS I; 3NDI A; 3CCQ 1; 1VQL 1; 1KQS Y; 3CC2 1; 1Q86 2; 1VQK 1; 4A3C I; 3NH5 A; 2K5R A; 1S7M A; 2QLV B; 3CCQ Z; 1RO0 A; 1VQL Z; 3CC2 Z; 4DQY B; 4RVH A; 1VQK Z; 3S14 I; 3G4S 1; 1K83 I; 5IT9 b; 1K73 2; 3HOU I; 1X3Z A; 4A3J I; 1Z02 A; 1TFI A; 3GKQ A; 1I3Q I; 3LUS A; 1S72 1; 1RO4 A; 3GTO I; 4Y52 I; 3GTQ I; 3CCJ 1; 4NBF A; 3J7A 4; 1VQ4 1; 1NP6 A; 3S2H I; 1USP B; 2RBL A; 1YJW 1; 2GTI A; 3I4N I; 3CCJ Z; 4BBR I; 4BY1 I; 5T67 A; 1KQS Z; 3MZK B; 1VQ4 Z; 2PMZ A; 3HOZ I; 4TNU A; 1TWF I; 2NVX I; 1YJW Z; 3G6E 1; 1VQ5 Z; 2W04 A; 4NBC A; 3RZO I; 1YJ9 1; 1YI2 1; 1N8R 2; 1Q86 1; 2JA7 I; 2GU2 A; 1X0T A; 4MON A; 1TWH I; 3J81 b; 3VMI A; 3G6E Z; 3CXC Y; 5D1O B; 2KPI A; 2IZ4 A; 1YJ9 Z; 1YI2 Z; 3CPW Y; 2M6N A; 3U50 C; 4MD7 A; 1YIT 1; 4NH1 C; 1RO2 A; 3OW2 Y; 1Y1V S; 4RVD A; 2JMO A; 3TDH B; 4A3B I; 3H3V J; 4A3F I; 1YIT Z; 1WCM I; 2QEX 1; 1QVG Y; 3IF8 A; 1RQF A; 2V8K A; 1M90 2; 3CMA 1; 2G2K A; 3BG0 B; 4NBH A; 3CME 1; 5AN9 F; 4E2Z A; 2NVQ I; 1Q82 2; 1I50 I; 4NBE A; 4RVF A; 3NFZ A; 1NJI 2; 3GTK I; 1Y1W I; 3CMA Z; 4QTT A; 3S1M I; 3BG1 B; 1Z01 A; 3CME Z; 1ZB8 A; 1X3W A; 1TWG I; 3CCR 1; 1KD1 2; 5T64 A; 1WII A; 3CPW Z; 2PM9 A; 3CCS 1; 3CCR Z; 4E30 A; 3VTN A; 1K9M 1; 1KC8 2; 3OW2 Z; 2RPR A; 1WW9 A; 3CCS Z; 4E2W A; 2VUM I; 3VMG A; 1VQP 1; 3JAM f; 3S1N I; 1Y1V I; 3FKI I; 3HOX I; 2O53 A; 1VQP Z; 2F4O A; 2I3C A; 1W2B Y; 1M90 1; 2R6M A; 2E2H I; 3HOW I; 3CCU 1; 4DK1 A; 1Q82 1; 2OOX B; 3T4N B; 3I07 A; 2YU9 I; 1K8A 2; 3S1R I; 4HGY A; 2DE7 A; 3CCU Z; 3S16 I; 2P28 A; 2VUG A; 3G4S Z; 1KD1 1; 4A3L I; 4BXX I; 1USP A; 3GTG I; 3Q87 A; 3D9X A; 3M3Y I; 5A2Q f; 4A3K I; 5IP9 I; 1VLA A; 1S72 Z; 2ZAE B; 2BJO A; 4HGZ A; 1Q7Y 1; 3K7A I; 3M4O I; 4RS4 A; 2EGT A; 3CC7 1; 3CCE 1; 2QRC B; 3GCF A; 1VQN 1; 2IZ3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
