The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
14
|
sequence length |
108
|
structure length |
77
|
Chain Sequence |
TTATFSIGSTGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRKVHNFQMECSLGMAVSTLCGEVPLYYI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Surfactant protein
|
| molecule keywords |
SURFACTANT PROTEIN C BRICHOS DOMAIN
|
| publication title |
High Resolution Structure of a Bricos Domain and its Implications for Anti-Amyloid Chaperone Activity on Lung Surgactant Protein C.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
14
|
| structure length |
77
|
| sequence length |
108
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2011-02-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04089 | BRICHOS | BRICHOS domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb |
#chains in the Genus database with same CATH superfamily 2YAD A; #chains in the Genus database with same CATH topology 3M4O I; 3CCR Z; 3VMG A; 2OTL Z; 3RZD I; 3S1M I; 3TE5 B; 3IR7 A; 2Q4Z A; 2LEX A; 2AKL A; 1N2F A; 4DK1 A; 5FLX f; 1TWH I; 3CCE Z; 1VQ9 Z; 1SIW A; 1N8R 2; 2RT9 A; 2PK7 A; 2V8J A; 4RV9 A; 2QA4 1; 1VQ6 1; 1YJW 1; 3CC2 1; 1NUI A; 3NDI A; 3CPW Y; 4RS4 A; 3CCQ 1; 2F4O A; 2V3V A; 1KC8 2; 2VPW A; 5T64 A; 3CMA 1; 2W04 A; 2PM9 A; 4RVH A; 1YIJ Z; 1L1O C; 3D6W A; 1Q82 2; 2R6M A; 1WW9 A; 3G4S 1; 1KD1 1; 3GTK I; 3IF8 A; 1VQO Z; 3G6E 1; 1NJI 2; 4NBG A; 3CCR 1; 2IZ4 A; 2OTL 1; 3S2H I; 1Q81 1; 1Y1V I; 1K73 1; 5AN9 F; 1VQP 1; 3CCL Z; 1VQN 1; 2VUM I; 3CME Z; 2NAP A; 4RVF A; 3HKZ A; 3CCM 1; 1WCM I; 1K83 I; 5D1O A; 4A3J I; 3HOU I; 1VQ5 1; 1TWA I; 5LL6 f; 2GTH A; 2JIP A; 2RHB A; 2R92 I; 4QTT A; 4HGY A; 1ZB8 A; 1S72 1; 3F3F C; 1Q86 1; 2QRC B; 2W03 A; 4A3E I; 1YHQ 1; 2P3Y A; 1K8A 2; 3CD6 1; 4BY1 I; 1Z03 A; 2JIQ A; 2QA4 Z; 1VQ8 1; 2VF1 A; 1VQ6 Z; 1YI2 Z; 3HOZ I; 2JUB A; 4S1T A; 4NB8 A; 3NH8 A; 5CM2 M; 1YJW Z; 1KRL A; 1KQS Z; 4A3M I; 3I4N I; 1TFI A; 3U50 C; 2O4H A; 5D1O B; 3TDH B; 2QKD A; 4BBS I; 4NBC A; 3I07 A; 3GTM I; 2E2I I; 2OOY B; 3CMA Z; 3GKQ A; 4A3B I; 1M90 1; 1W2B Z; 1YJ9 1; 1K9M 1; 3S1Q I; 3J80 f; 2E2H I; 4A3K I; 1QVG Y; 1S7M A; 4E2Z A; 3S1R I; 3GTO I; 2HU9 A; 3KIH A; 1WJ2 A; 2E9H A; 3G4S Z; 3NFZ A; 1YIT 1; 2JR6 A; 3LUS A; 3T4N B; 4NFR A; 3G6E Z; 1FDO A; 1P9N A; 2JS4 A; 2VUG A; 2DE7 A; 2NVQ I; 1VQM Z; 3GTJ I; 2NVX I; 3HOV I; 1VQP Z; 1X3Z A; 2V8I A; 3M3Y I; 1I6H I; 1AA6 A; 2ZAE B; 2GTI A; 1VQN Z; 4EWC A; 5FLM I; 3CCM Z; 1WII A; 2V8K A; 2JA6 I; 1YI2 1; 3JAM b; 4MD8 A; 4A3G I; 1VQ5 Z; 2VPX A; 2R93 I; 5IT9 b; 1RO0 A; 1YJN Z; 1QVF Y; 1QF8 A; 1Q7Y 2; 3S2D I; 1TWF I; 1VQ4 1; 2RPR A; 1S72 Z; 2M6N A; 3I55 1; 1ZH1 A; 3CCJ 1; 2QRD B; 1YHQ Z; 4E30 A; 5C3E I; 4AYB A; 3CD6 Z; 1VQ8 Z; 3BG0 B; 3VB9 A; 3CXC Z; 4A3D I; 2JIO A; 2JIR A; 2IV2 X; 2Y0S A; 1Y8C A; 4QTU A; 2G2K A; 3RZO I; 3D9X A; 1YUK A; 3CC7 Z; 1QXF A; 4MH4 A; 1VQM 1; 5A2Q f; 3J81 f; 3HOW I; 4NBA A; 5FLX b; 1TWG I; 3H0G I; 4HH4 A; 1YJ9 Z; 2OOX B; 2NVT I; 1N8R 1; 1Y1V S; 3PO3 I; 1YIT Z; 2WAQ A; 1Y1W I; 1JJ2 Y; 4RVG A; 2QEX 1; 2K5R A; 1YJN 1; 2BJO A; 4NBF A; 2RIQ A; 1X3W A; 1YUA A; 1KC8 1; 2Q51 A; 3BG1 B; 1ZB9 A; 3GTG I; 1USP A; 4MD9 A; 3OW2 Z; 1M1K 2; 4E33 A; 3GTQ I; 3CPW Z; 1Q82 1; 3J7A 4; 2VPZ A; 3MON A; 3NH5 A; 3HOX I; 4BY7 I; 2OZK A; 1NJI 1; 2YAD A; 2I3C A; 2VPY A; 3CC7 1; 3I4M I; 1VQK Z; 1TWC I; 3P5J B; 2OTJ 1; 5C4J I; 2RBL A; 1VQ4 Z; 3I55 Z; 5IP7 I; 1SFO I; 2QLV B; 3CCJ Z; 1JWH C; 4NB9 A; 3FQQ A; 4E31 A; 2E2J I; 2JMO A; 3GTM S; 1USP B; 4E2W A; 3FQM A; 1NP6 A; 1RQF A; 2JIM A; 3EER A; 1RO4 A; 3S17 I; 4DGL A; 3QWU A; 4MD7 A; 1FDI A; 5C4X I; 2K3R A; 1I3Q I; 2GU2 A; 5T67 A; 1VQ7 1; 2JA8 I; 2P28 A; 3K7A I; 1K8A 1; 3CCS 1; 4Y52 I; 2PMZ A; 5T6B A; 2NVY I; 1KD1 2; 3CQZ I; 5D1P A; 2AYD A; 4NBE A; 4NBD A; 2QEX Z; 1Q81 2; 1K73 2; 1VQK 1; 2QRE B; 2IZ3 A; 3CCV 1; 3PO2 I; 3J80 b; 1RLY A; 4NBH A; 4DQY B; 3OW2 Y; 4A3C I; 4A3F I; 3I56 1; 1R9T I; 2KPI A; 3S15 I; 2KI7 B; 3CCU 1; 4Y7N I; 3G71 1; 4NOZ A; 2YU9 I; 4HGZ A; 1KQS Y; 1X0T A; 3D2L A; 4X6A I; 2HF1 A; 4MON A; 2OTJ Z; 4RVD A; 1Q86 2; 5IP9 I; 1QVG Z; 2E7Z A; 3CC4 1; 1W2B Y; 1ML8 A; 2F4M A; 3VMI A; 2DE6 A; 1PFT A; 4MRI A; 3GTL I; 2LFU A; 3ESW A; 2H85 A; 3NDJ A; 1Q7Y 1; 3PO3 S; 2V45 A; 1VQL Z; 2O53 A; 2JA7 I; 1Z01 A; 1M90 2; 1VQ7 Z; 1VQ9 1; 4E2X A; 3CCE 1; 1LQL A; 1K9M 2; 3NH4 A; 2JNY A; 2JA5 I; 2R7Z I; 1DL6 A; 3CCS Z; 1WZN A; 4E32 A; 3H3V J; 1Q16 A; 1QVF Z; 2M48 A; 3FKI I; 3Q87 A; 3KIF A; 4NH1 C; 2QR1 B; 3S1N I; 3GTP I; 5A2Q b; 3J81 b; 4NBB A; 1Z02 A; 3CCV Z; 4E2Y A; 5C44 I; 1VLA A; 2WB1 A; 4MXU A; 3I56 Z; 1YIJ 1; 2LIY A; 3GCF A; 4CL1 A; 3CC2 Z; 1QYP A; 3JAM f; 3CCU Z; 3G71 Z; 4A3L I; 3CXC Y; 3CCQ Z; 3S16 I; 3S14 I; 4TNU A; 2J6A A; 1VQO 1; 4XX2 A; 5IT9 f; 1I50 I; 4BXX I; 2EGT A; 3MZK B; 1RNI A; 3F3P C; 4A3I I; 3IX0 A; 1VQL 1; 4A93 I; 3EED A; 3HOY I; 3VTN A; 3CCL 1; 3CC4 Z; 1M1K 1; 2B63 I; 3CME 1; 3IFU A; 4BBR I; 3VMH A; 2DE5 A; 3MZL B; 1RO2 A; 1JJ2 Z; #chains in the Genus database with same CATH homology 3M4O I; 3CCR Z; 3VMG A; 2OTL Z; 3RZD I; 3S1M I; 3TE5 B; 2Q4Z A; 2AKL A; 1N2F A; 4DK1 A; 5FLX f; 1TWH I; 3CCE Z; 1VQ9 Z; 1N8R 2; 2RT9 A; 2PK7 A; 2V8J A; 4RV9 A; 2QA4 1; 1VQ6 1; 1YJW 1; 3CC2 1; 1NUI A; 3NDI A; 3CPW Y; 4RS4 A; 3CCQ 1; 2F4O A; 1KC8 2; 5T64 A; 3CMA 1; 2W04 A; 2PM9 A; 4RVH A; 1YIJ Z; 1L1O C; 3D6W A; 1Q82 2; 2R6M A; 1WW9 A; 3G4S 1; 1KD1 1; 3GTK I; 3IF8 A; 1VQO Z; 3G6E 1; 1NJI 2; 4NBG A; 3CCR 1; 2IZ4 A; 2OTL 1; 3S2H I; 1Q81 1; 1Y1V I; 1K73 1; 5AN9 F; 1VQP 1; 3CCL Z; 1VQN 1; 2VUM I; 3CME Z; 4RVF A; 3HKZ A; 3CCM 1; 1WCM I; 1K83 I; 5D1O A; 4A3J I; 3HOU I; 1VQ5 1; 1TWA I; 5LL6 f; 2GTH A; 2RHB A; 2R92 I; 4QTT A; 4HGY A; 1ZB8 A; 1S72 1; 3F3F C; 1Q86 1; 2QRC B; 2W03 A; 4A3E I; 1YHQ 1; 2P3Y A; 1K8A 2; 3CD6 1; 4BY1 I; 1Z03 A; 2QA4 Z; 1VQ8 1; 2VF1 A; 1VQ6 Z; 1YI2 Z; 3HOZ I; 2JUB A; 4S1T A; 4NB8 A; 3NH8 A; 5CM2 M; 1YJW Z; 1KRL A; 1KQS Z; 4A3M I; 3I4N I; 1TFI A; 3U50 C; 2O4H A; 5D1O B; 3TDH B; 2QKD A; 4BBS I; 4NBC A; 3I07 A; 3GTM I; 2E2I I; 2OOY B; 3CMA Z; 3GKQ A; 4A3B I; 1M90 1; 1W2B Z; 1YJ9 1; 1K9M 1; 3S1Q I; 3J80 f; 2E2H I; 4A3K I; 1QVG Y; 1S7M A; 4E2Z A; 3S1R I; 3GTO I; 2HU9 A; 3KIH A; 2E9H A; 3G4S Z; 3NFZ A; 1YIT 1; 2JR6 A; 3LUS A; 3T4N B; 4NFR A; 3G6E Z; 1P9N A; 2JS4 A; 2VUG A; 2DE7 A; 2NVQ I; 1VQM Z; 3GTJ I; 2NVX I; 3HOV I; 1VQP Z; 1X3Z A; 2V8I A; 3M3Y I; 1I6H I; 2ZAE B; 2GTI A; 1VQN Z; 4EWC A; 5FLM I; 3CCM Z; 1WII A; 2V8K A; 2JA6 I; 1YI2 1; 3JAM b; 4MD8 A; 4A3G I; 1VQ5 Z; 2R93 I; 5IT9 b; 1RO0 A; 1YJN Z; 1QVF Y; 1QF8 A; 1Q7Y 2; 3S2D I; 1TWF I; 1VQ4 1; 2RPR A; 1S72 Z; 2M6N A; 3I55 1; 1ZH1 A; 3CCJ 1; 2QRD B; 1YHQ Z; 4E30 A; 5C3E I; 4AYB A; 3CD6 Z; 1VQ8 Z; 3BG0 B; 3VB9 A; 3CXC Z; 4A3D I; 2Y0S A; 4QTU A; 2G2K A; 3RZO I; 3D9X A; 1YUK A; 3CC7 Z; 4MH4 A; 1VQM 1; 5A2Q f; 3J81 f; 3HOW I; 4NBA A; 5FLX b; 1TWG I; 3H0G I; 4HH4 A; 1YJ9 Z; 2OOX B; 2NVT I; 1N8R 1; 1Y1V S; 3PO3 I; 1YIT Z; 2WAQ A; 1Y1W I; 1JJ2 Y; 4RVG A; 2QEX 1; 2K5R A; 1YJN 1; 2BJO A; 4NBF A; 2RIQ A; 1X3W A; 1YUA A; 1KC8 1; 2Q51 A; 3BG1 B; 1ZB9 A; 3GTG I; 1USP A; 4MD9 A; 3OW2 Z; 1M1K 2; 4E33 A; 3GTQ I; 3CPW Z; 1Q82 1; 3J7A 4; 3MON A; 3NH5 A; 3HOX I; 4BY7 I; 2OZK A; 1NJI 1; 2YAD A; 2I3C A; 3CC7 1; 3I4M I; 1VQK Z; 1TWC I; 3P5J B; 2OTJ 1; 5C4J I; 2RBL A; 1VQ4 Z; 3I55 Z; 5IP7 I; 1SFO I; 2QLV B; 3CCJ Z; 1JWH C; 4NB9 A; 3FQQ A; 4E31 A; 2E2J I; 2JMO A; 3GTM S; 1USP B; 4E2W A; 3FQM A; 1NP6 A; 1RQF A; 3EER A; 1RO4 A; 3S17 I; 4DGL A; 3QWU A; 4MD7 A; 5C4X I; 2K3R A; 1I3Q I; 2GU2 A; 5T67 A; 1VQ7 1; 2JA8 I; 2P28 A; 3K7A I; 1K8A 1; 3CCS 1; 4Y52 I; 2PMZ A; 5T6B A; 2NVY I; 1KD1 2; 3CQZ I; 5D1P A; 4NBE A; 4NBD A; 2QEX Z; 1Q81 2; 1K73 2; 1VQK 1; 2QRE B; 2IZ3 A; 3CCV 1; 3PO2 I; 3J80 b; 1RLY A; 4NBH A; 4DQY B; 3OW2 Y; 4A3C I; 4A3F I; 3I56 1; 1R9T I; 2KPI A; 3S15 I; 2KI7 B; 3CCU 1; 4Y7N I; 3G71 1; 4NOZ A; 2YU9 I; 4HGZ A; 1KQS Y; 1X0T A; 4X6A I; 2HF1 A; 4MON A; 2OTJ Z; 4RVD A; 1Q86 2; 5IP9 I; 1QVG Z; 3CC4 1; 1W2B Y; 1ML8 A; 2F4M A; 3VMI A; 2DE6 A; 1PFT A; 4MRI A; 3GTL I; 2LFU A; 3ESW A; 2H85 A; 3NDJ A; 1Q7Y 1; 3PO3 S; 1VQL Z; 2O53 A; 2JA7 I; 1Z01 A; 1M90 2; 1VQ7 Z; 1VQ9 1; 4E2X A; 3CCE 1; 1LQL A; 1K9M 2; 3NH4 A; 2JNY A; 2JA5 I; 2R7Z I; 1DL6 A; 3CCS Z; 4E32 A; 3H3V J; 1QVF Z; 2M48 A; 3FKI I; 3Q87 A; 3KIF A; 4NH1 C; 2QR1 B; 3S1N I; 3GTP I; 5A2Q b; 3J81 b; 4NBB A; 1Z02 A; 3CCV Z; 4E2Y A; 5C44 I; 1VLA A; 2WB1 A; 4MXU A; 3I56 Z; 1YIJ 1; 2LIY A; 3GCF A; 4CL1 A; 3CC2 Z; 1QYP A; 3JAM f; 3CCU Z; 3G71 Z; 4A3L I; 3CXC Y; 3CCQ Z; 3S16 I; 3S14 I; 4TNU A; 2J6A A; 1VQO 1; 4XX2 A; 5IT9 f; 1I50 I; 4BXX I; 2EGT A; 3MZK B; 1RNI A; 3F3P C; 4A3I I; 3IX0 A; 1VQL 1; 4A93 I; 3EED A; 3HOY I; 3VTN A; 3CCL 1; 3CC4 Z; 1M1K 1; 2B63 I; 3CME 1; 3IFU A; 4BBR I; 3VMH A; 2DE5 A; 3MZL B; 1RO2 A; 1JJ2 Z;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
