The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
118
|
sequence length |
460
|
structure length |
460
|
Chain Sequence |
ETVVPSRVGDLKFESDFPTQETMKNMLNEMDFQRATQAYLWGIPASSIMEWLNVSRNDFKFEEGQMGFFNTLKQKQGIITANFTTPYVIGTWNLEKTGPLIINLPEAKMAGMMLDVHQRVLSDLSLLGPDKGKGGKYLIVPPGEKYKDLNPKGYYVIRPKTNVVYGGIRILEPDVDRVVKQVVPNITTQPYADGKLGRKIPVAQVPEIDWTHIPKDGLEYWKTIHQIIQENPVEERDRFVMAQLKFLGIEKGKPFNPTEEQKKILLEASKVGRAMAQSNDYTKRFTQPYWKGTNWKDAISVSLDQRSENYDELDERAAWFYEAITVSRGMKSTIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWSTTVYDENNRLMIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYENNWVQTNPGEGWFTYFRFYGPTEKMFDKSWTMGDIELV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Crystal structure of VPA0735 from Vibrio parahaemolyticus in monoclinic form, NorthEast Structural Genomics target VpR109
rcsb |
molecule tags |
Structural genomics, unknown function
|
source organism |
Vibrio parahaemolyticus
|
molecule keywords |
Uncharacterized protein VPA0735
|
total genus |
118
|
structure length |
460
|
sequence length |
460
|
chains with identical sequence |
B, C, D
|
ec nomenclature | |
pdb deposition date | 2011-12-31 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF06742 | DUF1214 | Protein of unknown function (DUF1214) |
A | PF06863 | DUF1254 | Protein of unknown function (DUF1254) |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | VPA0735-like fold | VPA0735-like domain | ||
Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Domain of unknown function DUF1254 | ||
Mainly Beta | Sandwich | Jelly Rolls | Domain of unknown function DUF1214, C-terminal domain |