The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
5
|
sequence length |
72
|
structure length |
72
|
Chain Sequence |
KKRKKKSCTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution
pubmed doi rcsb |
molecule keywords |
18S RRNA
|
molecule tags |
Ribosome
|
total genus |
5
|
structure length |
72
|
sequence length |
72
|
ec nomenclature | |
pdb deposition date | 2015-05-21 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
f | PF01599 | Ribosomal_S27 | Ribosomal protein S27a |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb |
#chains in the Genus database with same CATH superfamily 3J81 f; 5IT9 f; 3J80 f; 5FLX f; 3JAM f; 5A2Q f; #chains in the Genus database with same CATH topology 4E2Y A; 3CCU 1; 2P3Y A; 3I56 1; 4Y7N I; 3GTL I; 2RHB A; 2Q51 A; 4QTU A; 3CXC Z; 2VPZ A; 5FLM I; 1Q81 2; 1WJ2 A; 4RVD A; 4E33 A; 4Y52 I; 1I50 I; 2BJO A; 2V3V A; 2VF1 A; 2GTH A; 1KC8 1; 2HU9 A; 4HGZ A; 1WW9 A; 4NB8 A; 2VPW A; 3ESW A; 3MZL B; 4NBF A; 3CCR 1; 1WII A; 2HF1 A; 2OTL Z; 1KD1 2; 1JJ2 Y; 3I55 Z; 2PM9 A; 4A3J I; 3OW2 Z; 3S17 I; 1YHQ Z; 4DK1 A; 3VMH A; 2W03 A; 3U50 C; 2QEX 1; 1TWC I; 2F4M A; 2H85 A; 3CC7 1; 2GTI A; 4DGL A; 1QVF Y; 4E2Z A; 3G71 1; 5T67 A; 3S2H I; 2JR6 A; 1RLY A; 2JNY A; 3KIH A; 1VQO Z; 1M90 1; 4A3G I; 4A3M I; 1VQ9 Z; 1VQ7 1; 3FQM A; 3PO3 I; 3MON A; 3KIF A; 3CXC Y; 3D2L A; 4A3B I; 1TWF I; 2QLV B; 2B63 I; 2R7Z I; 3J80 f; 1YIJ Z; 2E2I I; 2NVX I; 1YJ9 Z; 2RT9 A; 3I07 A; 2JA8 I; 1VQ5 Z; 2LIY A; 1Z03 A; 3CCU Z; 1P9N A; 3I56 Z; 2R93 I; 5AN9 F; 1YJN 1; 2QRC B; 4NH1 C; 1VQK 1; 3HOY I; 4MH4 A; 3IF8 A; 1N8R 2; 1Z01 A; 3CC4 Z; 1L1O C; 2OOY B; 2JA7 I; 1VQL 1; 1Y1V S; 4EWC A; 1NJI 1; 3GTM S; 2DE7 A; 3CCE 1; 5IT9 f; 3F3P C; 3CPW Y; 2E2H I; 1YJW 1; 4MD8 A; 1Y8C A; 4A3I I; 1I3Q I; 1QVF Z; 2R92 I; 5C44 I; 1K73 2; 1M1K 2; 4E2W A; 4E32 A; 1Q81 1; 3CQZ I; 2VUG A; 1VQ4 1; 1X0T A; 3Q87 A; 3T4N B; 5D1O A; 1VQN Z; 4A93 I; 3J80 b; 1RO4 A; 1I6H I; 3CD6 Z; 3S1N I; 2QEX Z; 4HH4 A; 2WAQ A; 2JA6 I; 2QRD B; 1VQ8 Z; 5T64 A; 1VQ6 Z; 3CCJ 1; 3CCV Z; 4HGY A; 3VMG A; 2GU2 A; 4BXX I; 2M6N A; 2QRE B; 3CCQ 1; 1VQP 1; 1QXF A; 2IZ4 A; 1VQ7 Z; 1KD1 1; 3GCF A; 4NBG A; 4E30 A; 4NBB A; 3NH8 A; 3NH4 A; 1NP6 A; 2YU9 I; 5IP9 I; 2VPY A; 3CMA 1; 2P28 A; 3S1R I; 3CCS Z; 4A3F I; 2JUB A; 1K8A 2; 5IT9 b; 3S1M I; 2AKL A; 3CCM Z; 1VQM 1; 4AYB A; 3RZO I; 4NBE A; 5C4X I; 3I4N I; 4MON A; 2JIM A; 3VMI A; 3CPW Z; 2PMZ A; 1QF8 A; 4MD9 A; 2EGT A; 4RV9 A; 2QA4 1; 2WB1 A; 3I4M I; 3K7A I; 3HOZ I; 3BG1 B; 1LQL A; 1ZH1 A; 5FLX f; 3RZD I; 1SFO I; 5C3E I; 3S14 I; 3CCE Z; 1S72 1; 2JA5 I; 4NB9 A; 2K5R A; 3CC2 1; 1ML8 A; 3M3Y I; 1Q86 1; 2K3R A; 4A3D I; 3NFZ A; 4NBA A; 1K9M 2; 3EER A; 3CCL Z; 4S1T A; 2JIP A; 1QVG Y; 1Y1V I; 3G6E Z; 2I3C A; 3GTM I; 1N2F A; 1AA6 A; 4MD7 A; 1NUI A; 4X6A I; 4NFR A; 1PFT A; 1Q7Y 2; 2RIQ A; 4TNU A; 2O53 A; 1Q82 2; 1FDO A; 2QR1 B; 1R9T I; 3GTK I; 2RPR A; 5IP7 I; 2KPI A; 3H0G I; 1M90 2; 3NH5 A; 3VB9 A; 1K73 1; 3NDI A; 3S16 I; 2DE6 A; 4A3C I; 3CCQ Z; 1VQP Z; 1YHQ 1; 2G2K A; 3S1Q I; 2JMO A; 5FLX b; 2OTJ 1; 3GTP I; 3H3V J; 3CCR Z; 3GTO I; 1VQM Z; 2V8J A; 2V8I A; 3S2D I; 2AYD A; 4DQY B; 5CM2 M; 4NBD A; 1YUK A; 1WZN A; 2KI7 B; 1SIW A; 1USP A; 4NBH A; 3FKI I; 4E31 A; 1RNI A; 2QA4 Z; 2NVT I; 3CC7 Z; 3GKQ A; 3F3F C; 1YJ9 1; 3GTJ I; 1QVG Z; 3BG0 B; 3G71 Z; 2VUM I; 1NJI 2; 3QWU A; 1VQ5 1; 1K8A 1; 1YIT 1; 3CME 1; 3NDJ A; 2NAP A; 3MZK B; 3M4O I; 1S7M A; 1VLA A; 3G4S 1; 1KQS Z; 4NOZ A; 1K83 I; 2NVY I; 3FQQ A; 2OOX B; 1S72 Z; 3D6W A; 2DE5 A; 2E2J I; 3CC2 Z; 1X3W A; 3IX0 A; 2JS4 A; 3HKZ A; 3CC4 1; 2OZK A; 3JAM f; 5A2Q f; 2E7Z A; 1TWG I; 2LFU A; 2E9H A; 2ZAE B; 1RO0 A; 3TDH B; 4A3E I; 5D1O B; 2RBL A; 1YJN Z; 2QKD A; 3J7A 4; 1ZB9 A; 1JWH C; 4MRI A; 1VQK Z; 1USP B; 1KC8 2; 1YI2 1; 2R6M A; 5LL6 f; 3TE5 B; 1K9M 1; 1VQN 1; 4BBS I; 4RVG A; 4XX2 A; 5D1P A; 1VQL Z; 4BY7 I; 3CD6 1; 1YJW Z; 1VQ8 1; 2OTJ Z; 1RO2 A; 1Q7Y 1; 1VQ6 1; 3CCV 1; 1W2B Z; 1Q82 1; 5C4J I; 3J81 f; 1RQF A; 5T6B A; 2Y0S A; 4A3L I; 2IZ3 A; 2V45 A; 3IR7 A; 2W04 A; 1X3Z A; 4BBR I; 2YAD A; 1N8R 1; 1VQ4 Z; 1Q16 A; 2LEX A; 3LUS A; 1KQS Y; 1QYP A; 2F4O A; 2IV2 X; 3JAM b; 2NVQ I; 1TWA I; 5A2Q b; 2JIO A; 4NBC A; 3CCS 1; 3D9X A; 1YUA A; 3CCM 1; 4BY1 I; 3CCJ Z; 2OTL 1; 1Y1W I; 1WCM I; 1M1K 1; 2JIR A; 3I55 1; 2M48 A; 1YIT Z; 3CME Z; 1TFI A; 1ZB8 A; 2O4H A; 3HOW I; 3G4S Z; 1Q86 2; 3PO3 S; 4RVF A; 1FDI A; 2J6A A; 2VPX A; 4RVH A; 3P5J B; 3CMA Z; 3HOX I; 1Z02 A; 1DL6 A; 1VQO 1; 3VTN A; 4CL1 A; 3HOU I; 1JJ2 Z; 1VQ9 1; 4QTT A; 3GTG I; 2Q4Z A; 3OW2 Y; 2V8K A; 4E2X A; 3J81 b; 3S15 I; 1TWH I; 3EED A; 4RS4 A; 3IFU A; 4A3K I; 1YIJ 1; 4MXU A; 3CCL 1; 1W2B Y; 3HOV I; 3GTQ I; 2JIQ A; 3G6E 1; 1KRL A; 3PO2 I; 1YI2 Z; 2PK7 A; #chains in the Genus database with same CATH homology 4E2Y A; 3CCU 1; 2P3Y A; 3I56 1; 4Y7N I; 3GTL I; 2RHB A; 2Q51 A; 4QTU A; 3CXC Z; 5FLM I; 1Q81 2; 4RVD A; 4E33 A; 4Y52 I; 1I50 I; 2BJO A; 2VF1 A; 2GTH A; 1KC8 1; 2HU9 A; 4HGZ A; 1WW9 A; 4NB8 A; 3ESW A; 3MZL B; 4NBF A; 3CCR 1; 1WII A; 2HF1 A; 2OTL Z; 1KD1 2; 1JJ2 Y; 3I55 Z; 2PM9 A; 4A3J I; 3OW2 Z; 3S17 I; 1YHQ Z; 4DK1 A; 3VMH A; 2W03 A; 3U50 C; 2QEX 1; 1TWC I; 2F4M A; 2H85 A; 3CC7 1; 2GTI A; 4DGL A; 1QVF Y; 4E2Z A; 3G71 1; 5T67 A; 3S2H I; 2JR6 A; 2JNY A; 1RLY A; 3KIH A; 1VQO Z; 1M90 1; 4A3G I; 4A3M I; 1VQ9 Z; 1VQ7 1; 3FQM A; 3PO3 I; 3MON A; 3KIF A; 3CXC Y; 4A3B I; 1TWF I; 2QLV B; 2B63 I; 2R7Z I; 3J80 f; 1YIJ Z; 2E2I I; 2NVX I; 1YJ9 Z; 2RT9 A; 3I07 A; 2JA8 I; 1VQ5 Z; 2LIY A; 1Z03 A; 3CCU Z; 1P9N A; 3I56 Z; 2R93 I; 5AN9 F; 1YJN 1; 2QRC B; 4NH1 C; 1VQK 1; 3HOY I; 4MH4 A; 3IF8 A; 1N8R 2; 1Z01 A; 3CC4 Z; 1L1O C; 2OOY B; 2JA7 I; 1VQL 1; 1Y1V S; 4EWC A; 1NJI 1; 3GTM S; 2DE7 A; 3CCE 1; 5IT9 f; 3F3P C; 3CPW Y; 2E2H I; 1YJW 1; 4MD8 A; 4A3I I; 1I3Q I; 1QVF Z; 2R92 I; 5C44 I; 1K73 2; 1M1K 2; 4E2W A; 4E32 A; 1Q81 1; 3CQZ I; 2VUG A; 1VQ4 1; 1X0T A; 3Q87 A; 3T4N B; 5D1O A; 1VQN Z; 4A93 I; 3J80 b; 1RO4 A; 1I6H I; 3CD6 Z; 3S1N I; 2QEX Z; 4HH4 A; 2WAQ A; 2JA6 I; 2QRD B; 1VQ8 Z; 5T64 A; 1VQ6 Z; 3CCJ 1; 3CCV Z; 4HGY A; 3VMG A; 2GU2 A; 4BXX I; 2M6N A; 2QRE B; 3CCQ 1; 1VQP 1; 2IZ4 A; 1VQ7 Z; 1KD1 1; 3GCF A; 4NBG A; 4E30 A; 4NBB A; 3NH8 A; 3NH4 A; 1NP6 A; 2YU9 I; 5IP9 I; 3CMA 1; 2P28 A; 3S1R I; 3CCS Z; 4A3F I; 2JUB A; 1K8A 2; 5IT9 b; 3S1M I; 2AKL A; 3CCM Z; 1VQM 1; 4AYB A; 3RZO I; 4NBE A; 5C4X I; 3I4N I; 4MON A; 3VMI A; 3CPW Z; 2PMZ A; 1QF8 A; 4MD9 A; 2EGT A; 4RV9 A; 2QA4 1; 2WB1 A; 3I4M I; 3K7A I; 3HOZ I; 3BG1 B; 1LQL A; 1ZH1 A; 5FLX f; 3RZD I; 1SFO I; 5C3E I; 3S14 I; 3CCE Z; 1S72 1; 2JA5 I; 4NB9 A; 2K5R A; 3CC2 1; 1ML8 A; 3M3Y I; 1Q86 1; 2K3R A; 4A3D I; 3NFZ A; 4NBA A; 1K9M 2; 3EER A; 3CCL Z; 4S1T A; 1QVG Y; 1Y1V I; 3G6E Z; 2I3C A; 3GTM I; 1N2F A; 4MD7 A; 1NUI A; 4X6A I; 4NFR A; 1PFT A; 1Q7Y 2; 2RIQ A; 4TNU A; 2O53 A; 1Q82 2; 2QR1 B; 1R9T I; 3GTK I; 2RPR A; 5IP7 I; 2KPI A; 3H0G I; 1M90 2; 3NH5 A; 3VB9 A; 1K73 1; 3NDI A; 3S16 I; 2DE6 A; 4A3C I; 3CCQ Z; 1VQP Z; 1YHQ 1; 2G2K A; 3S1Q I; 2JMO A; 5FLX b; 2OTJ 1; 3GTP I; 3H3V J; 3CCR Z; 3GTO I; 1VQM Z; 2V8J A; 2V8I A; 3S2D I; 4DQY B; 5CM2 M; 4NBD A; 1YUK A; 2KI7 B; 1USP A; 4NBH A; 3FKI I; 4E31 A; 1RNI A; 2QA4 Z; 2NVT I; 3CC7 Z; 3GKQ A; 3F3F C; 1YJ9 1; 3GTJ I; 1QVG Z; 3BG0 B; 3G71 Z; 2VUM I; 1NJI 2; 3QWU A; 1VQ5 1; 1K8A 1; 1YIT 1; 3CME 1; 3NDJ A; 3MZK B; 3M4O I; 1S7M A; 1VLA A; 3G4S 1; 1KQS Z; 4NOZ A; 1K83 I; 2NVY I; 3FQQ A; 2OOX B; 1S72 Z; 3D6W A; 2DE5 A; 2E2J I; 3CC2 Z; 1X3W A; 3IX0 A; 2JS4 A; 3HKZ A; 3CC4 1; 2OZK A; 3JAM f; 5A2Q f; 1TWG I; 2LFU A; 2E9H A; 2ZAE B; 1RO0 A; 3TDH B; 4A3E I; 5D1O B; 2RBL A; 1YJN Z; 2QKD A; 3J7A 4; 1ZB9 A; 1JWH C; 4MRI A; 1VQK Z; 1USP B; 1KC8 2; 1YI2 1; 2R6M A; 5LL6 f; 3TE5 B; 1K9M 1; 1VQN 1; 4BBS I; 4RVG A; 4XX2 A; 5D1P A; 1VQL Z; 4BY7 I; 3CD6 1; 1YJW Z; 1VQ8 1; 2OTJ Z; 1RO2 A; 1Q7Y 1; 1VQ6 1; 3CCV 1; 1W2B Z; 1Q82 1; 5C4J I; 3J81 f; 1RQF A; 2Y0S A; 5T6B A; 4A3L I; 2IZ3 A; 4BBR I; 2W04 A; 1X3Z A; 2YAD A; 1N8R 1; 1VQ4 Z; 3LUS A; 1KQS Y; 1QYP A; 2F4O A; 3JAM b; 2NVQ I; 1TWA I; 5A2Q b; 4NBC A; 3CCS 1; 3D9X A; 1YUA A; 3CCM 1; 4BY1 I; 3CCJ Z; 2OTL 1; 1Y1W I; 1WCM I; 1M1K 1; 3I55 1; 2M48 A; 1YIT Z; 3CME Z; 1TFI A; 1ZB8 A; 2O4H A; 3HOW I; 3G4S Z; 1Q86 2; 3PO3 S; 4RVF A; 2J6A A; 4RVH A; 3P5J B; 3CMA Z; 3HOX I; 1Z02 A; 1DL6 A; 1VQO 1; 3VTN A; 4CL1 A; 3HOU I; 1JJ2 Z; 1VQ9 1; 4QTT A; 3GTG I; 2Q4Z A; 3OW2 Y; 2V8K A; 4E2X A; 3J81 b; 3S15 I; 1TWH I; 3EED A; 4RS4 A; 3IFU A; 4A3K I; 1YIJ 1; 4MXU A; 3CCL 1; 1W2B Y; 3HOV I; 3GTQ I; 3G6E 1; 1KRL A; 3PO2 I; 1YI2 Z; 2PK7 A;
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