2AYDA

Crystal structure of the c-terminal wrky domainof atwrky1, an sa-induced and partially npr1-dependent transcription factor
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
76
structure length
76
Chain Sequence
SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords WRKY transcription factor 1
publication title DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 15
structure length 76
sequence length 76
ec nomenclature
pdb deposition date 2005-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03106 WRKY WRKY DNA -binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.25.80 Mainly Beta Single Sheet N-terminal domain of TfIIb WRKY domain 2aydA01
2LEXA 2AYDA 1WJ2A
chains in the Genus database with same CATH superfamily
2NAPA 2R93I 2P3YA 5C44I 1USPB 1P9NA 2J6AA 3HOUI 4A3EI 3D6WA 3CCQ1 5C4XI 1FDOA 1KRLA 4NBGA 5D1OA 5C3EI 3TE5B 3BG1B 5D1PA 2NVYI 1TWGI 1TWAI 4NOZA 1RO2A 1VQN1 1Y1WI 4A3LI 1Q861 2LEXA 1YIT1 1TWHI 2VUMI 3GKQA 4Y7NI 1K8A2 2YU9I 4RS4A 4BBSI 4A93I 3D2LA 1YJNZ 2V8KA 1WW9A 1Z03A 3JAMb 1YIJ1 3CMAZ 1VQO1 1KC82 2IZ4A 2QREB 1M1K2 3MONA 1VQKZ 3I56Z 2JA6I 2G2KA 2DE6A 2GU2A 4E2ZA 2JIQA 2QA4Z 2B63I 3CPWZ 4NFRA 5A2Qb 3CCRZ 4A3CI 3CCMZ 1RQFA 3FQMA 2PMZA 2M6NA 2LIYA 1M901 5AN9F 3KIFA 2JIRA 3NDJA 1YUAA 3MZKB 4A3FI 3S14I 3I07A 1QVFZ 2JMOA 2K3RA 3OW2Z 3HOXI 3IFUA 2JA5I 2NVTI 1Y1VS 1YJW1 3F3PC 3M3YI 4A3JI 1VQL1 1Q862 3CQZI 1ZH1A 1KQSZ 2QR1B 3H0GI 2V3VA 2H85A 1Q811 1Q821 3EERA 1WIIA 1TWFI 2WB1A 1N8R2 3J81b 1YJN1 2QLVB 4XX2A 1YHQ1 5CM2M 1W2BZ 1QVFY 2GTHA 3S16I 1ZB9A 3TDHB 3CMA1 2ZAEB 3I4NI 2PM9A 1I3QI 1VQM1 3CME1 3JAMf 1KQSY 1VQOZ 3HKZA 1X3ZA 4RV9A 2DE5A 4E33A 1VQ71 1ZB8A 1KC81 2QA41 1R9TI 2KPIA 3CCSZ 1KD11 4BXXI 1WZNA 4DK1A 4MD7A 1NJI1 2I3CA 4NBEA 1M902 1W2BY 3IX0A 2RIQA 2W03A 3S1MI 1VLAA 4HGYA 3EEDA 5A2Qf 1YJ91 4HH4A 2LFUA 2R92I 2KI7B 3CD6Z 1VQ81 4NH1C 3GTMS 2EGTA 1RLYA 2V8IA 1Q812 1Q822 2RPRA 1I6HI 1YJWZ 1VQLZ 1QYPA 3VMGA 3MZLB 5FLXb 2W04A 4MD9A 5IP9I 3T4NB 3J80b 1SIWA 3BG0B 1NUIA 3NH5A 3J81f 1Z02A 2RHBA 1YHQZ 1N8R1 3GTKI 2QEXZ 4A3MI 1QVGZ 3HOWI 4CL1A 2RT9A 5IT9f 2V45A 2PK7A 3CCS1 1VQMZ 3CMEZ 1NJI2 1Z01A 1YI21 1JJ2Z 2RBLA 1VQ7Z 1S7MA 3GTPI 4NBDA 3IR7A 3CCJ1 1Q7Y1 2O4HA 1Y1VI 1VQ91 1VQ41 4MD8A 4DQYB 3KIHA 2NVXI 1QF8A 3HOZI 4E32A 4E31A 4MXUA 1QVGY 1YJ9Z 1VQPZ 5D1OB 3CD61 4NBAA 3FKII 2IZ3A 1JJ2Y 1SFOI 4MRIA 1VQ8Z 3G4SZ 2M48A 4NBBA 4E2WA 4NBCA 2E2II 2Y0SA 3CXCY 3VB9A 3S1RI 4A3DI 1USPA 2VF1A 2E2JI 5T67A 4A3GI 5FLXf 2QRCB 2QEX1 1DL6A 4HGZA 3QWUA 3J80f 4A3II 1S721 2R7ZI 1I50I 3HOYI 3PO3S 4RVGA 4QTUA 1FDIA 3NH8A 2VPYA 1Q7Y2 2OOYB 5T64A 3PO2I 1Y8CA 5T6BA 3Q87A 3D9XA 1YI2Z 3NFZA 4RVDA 3NH4A 3LUSA 3GTMI 3RZOI 1K9M2 2JA7I 4BY7I 2HF1A 3S17I 3CCJZ 1VQ51 4RVHA 1VQP1 2JIMA 1VQ9Z 1WJ2A 1VQ4Z 3I55Z 2OZKA 3RZDI 4DGLA 2JS4A 2QKDA 1VQ6Z 3GTQI 2P28A 3CCE1 2VPWA 5LL6f 2F4OA 3G4S1 1L1OC 1TWCI 1LQLA 1X0TA 1YUKA 4E2YA 3S1NI 2OTL1 2VPXA 2VPZA 2K5RA 2R6MA 3GTJI 3CC4Z 4AYBA 3CCU1 1AA6A 2OTJZ 4E30A 4NB9A 2E2HI 3HOVI 2V8JA 4BY1I 3CCV1 1N2FA 3CCLZ 1K732 3I4MI 2AYDA 3G6EZ 1S72Z 4A3BI 1ML8A 5IP7I 2OOXB 1TFIA 2JUBA 4EWCA 3J7A4 3GCFA 4NBFA 3I551 2VUGA 2AKLA 3CC71 2NVQI 3CXCZ 3M4OI 3U50C 3K7AI 2WAQA 2JIOA 1VQ5Z 1X3WA 3CC2Z 3ESWA 1K9M1 4Y52I 3FQQA 5C4JI 4BBRI 1VQ61 1KD12 3F3FC 3H3VJ 3S2DI 3CCEZ 2E9HA 4QTTA 2JR6A 3G71Z 2JA8I 1RNIA 2Q4ZA 3GTOI 3IF8A 3PO3I 2JNYA 2OTLZ 1WCMI 2JIPA 3CC41 2OTJ1 3GTLI 2GTIA 3CCQZ 2DE7A 3P5JB 4A3KI 3CCL1 3CCUZ 2F4MA 4TNUA 3G6E1 3VMHA 3CPWY 3CCVZ 3VMIA 2HU9A 3VTNA 4RVFA 2O53A 1JWHC 4NBHA 1K731 1VQNZ 2E7ZA 3S1QI 1YITZ 4MONA 3S2HI 1QXFA 3NDIA 1RO4A 3OW2Y 1K83I 1K8A1 2IV2X 1VQK1 1RO0A 5IT9b 3I561 3CC21 2QRDB 1YIJZ 3CC7Z 5FLMI 3GTGI 4S1TA 2BJOA 1M1K1 2Q51A 4NB8A 3S15I 4E2XA 4X6AI 1PFTA 3G711 1NP6A 3CCR1 4MH4A 3CCM1 2YADA 1Q16A
chains in the Genus database with same CATH topology
2LEXA 2AYDA 1WJ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LEX A;  2AYD A;  1WJ2 A; 
#chains in the Genus database with same CATH topology
 2NAP A;  2R93 I;  2P3Y A;  5C44 I;  1USP B;  1P9N A;  2J6A A;  3HOU I;  4A3E I;  3D6W A;  3CCQ 1;  5C4X I;  1FDO A;  1KRL A;  4NBG A;  5D1O A;  5C3E I;  3TE5 B;  3BG1 B;  5D1P A;  2NVY I;  1TWG I;  1TWA I;  4NOZ A;  1RO2 A;  1VQN 1;  1Y1W I;  4A3L I;  1Q86 1;  2LEX A;  1YIT 1;  1TWH I;  2VUM I;  3GKQ A;  4Y7N I;  1K8A 2;  2YU9 I;  4RS4 A;  4BBS I;  4A93 I;  3D2L A;  1YJN Z;  2V8K A;  1WW9 A;  1Z03 A;  3JAM b;  1YIJ 1;  3CMA Z;  1VQO 1;  1KC8 2;  2IZ4 A;  2QRE B;  1M1K 2;  3MON A;  1VQK Z;  3I56 Z;  2JA6 I;  2G2K A;  2DE6 A;  2GU2 A;  4E2Z A;  2JIQ A;  2QA4 Z;  2B63 I;  3CPW Z;  4NFR A;  5A2Q b;  3CCR Z;  4A3C I;  3CCM Z;  1RQF A;  3FQM A;  2PMZ A;  2M6N A;  2LIY A;  1M90 1;  5AN9 F;  3KIF A;  2JIR A;  3NDJ A;  1YUA A;  3MZK B;  4A3F I;  3S14 I;  3I07 A;  1QVF Z;  2JMO A;  2K3R A;  3OW2 Z;  3HOX I;  3IFU A;  2JA5 I;  2NVT I;  1Y1V S;  1YJW 1;  3F3P C;  3M3Y I;  4A3J I;  1VQL 1;  1Q86 2;  3CQZ I;  1ZH1 A;  1KQS Z;  2QR1 B;  3H0G I;  2V3V A;  2H85 A;  1Q81 1;  1Q82 1;  3EER A;  1WII A;  1TWF I;  2WB1 A;  1N8R 2;  3J81 b;  1YJN 1;  2QLV B;  4XX2 A;  1YHQ 1;  5CM2 M;  1W2B Z;  1QVF Y;  2GTH A;  3S16 I;  1ZB9 A;  3TDH B;  3CMA 1;  2ZAE B;  3I4N I;  2PM9 A;  1I3Q I;  1VQM 1;  3CME 1;  3JAM f;  1KQS Y;  1VQO Z;  3HKZ A;  1X3Z A;  4RV9 A;  2DE5 A;  4E33 A;  1VQ7 1;  1ZB8 A;  1KC8 1;  2QA4 1;  1R9T I;  2KPI A;  3CCS Z;  1KD1 1;  4BXX I;  1WZN A;  4DK1 A;  4MD7 A;  1NJI 1;  2I3C A;  4NBE A;  1M90 2;  1W2B Y;  3IX0 A;  2RIQ A;  2W03 A;  3S1M I;  1VLA A;  4HGY A;  3EED A;  5A2Q f;  1YJ9 1;  4HH4 A;  2LFU A;  2R92 I;  2KI7 B;  3CD6 Z;  1VQ8 1;  4NH1 C;  3GTM S;  2EGT A;  1RLY A;  2V8I A;  1Q81 2;  1Q82 2;  2RPR A;  1I6H I;  1YJW Z;  1VQL Z;  1QYP A;  3VMG A;  3MZL B;  5FLX b;  2W04 A;  4MD9 A;  5IP9 I;  3T4N B;  3J80 b;  1SIW A;  3BG0 B;  1NUI A;  3NH5 A;  3J81 f;  1Z02 A;  2RHB A;  1YHQ Z;  1N8R 1;  3GTK I;  2QEX Z;  4A3M I;  1QVG Z;  3HOW I;  4CL1 A;  2RT9 A;  5IT9 f;  2V45 A;  2PK7 A;  3CCS 1;  1VQM Z;  3CME Z;  1NJI 2;  1Z01 A;  1YI2 1;  1JJ2 Z;  2RBL A;  1VQ7 Z;  1S7M A;  3GTP I;  4NBD A;  3IR7 A;  3CCJ 1;  1Q7Y 1;  2O4H A;  1Y1V I;  1VQ9 1;  1VQ4 1;  4MD8 A;  4DQY B;  3KIH A;  2NVX I;  1QF8 A;  3HOZ I;  4E32 A;  4E31 A;  4MXU A;  1QVG Y;  1YJ9 Z;  1VQP Z;  5D1O B;  3CD6 1;  4NBA A;  3FKI I;  2IZ3 A;  1JJ2 Y;  1SFO I;  4MRI A;  1VQ8 Z;  3G4S Z;  2M48 A;  4NBB A;  4E2W A;  4NBC A;  2E2I I;  2Y0S A;  3CXC Y;  3VB9 A;  3S1R I;  4A3D I;  1USP A;  2VF1 A;  2E2J I;  5T67 A;  4A3G I;  5FLX f;  2QRC B;  2QEX 1;  1DL6 A;  4HGZ A;  3QWU A;  3J80 f;  4A3I I;  1S72 1;  2R7Z I;  1I50 I;  3HOY I;  3PO3 S;  4RVG A;  4QTU A;  1FDI A;  3NH8 A;  2VPY A;  1Q7Y 2;  2OOY B;  5T64 A;  3PO2 I;  1Y8C A;  5T6B A;  3Q87 A;  3D9X A;  1YI2 Z;  3NFZ A;  4RVD A;  3NH4 A;  3LUS A;  3GTM I;  3RZO I;  1K9M 2;  2JA7 I;  4BY7 I;  2HF1 A;  3S17 I;  3CCJ Z;  1VQ5 1;  4RVH A;  1VQP 1;  2JIM A;  1VQ9 Z;  1WJ2 A;  1VQ4 Z;  3I55 Z;  2OZK A;  3RZD I;  4DGL A;  2JS4 A;  2QKD A;  1VQ6 Z;  3GTQ I;  2P28 A;  3CCE 1;  2VPW A;  5LL6 f;  2F4O A;  3G4S 1;  1L1O C;  1TWC I;  1LQL A;  1X0T A;  1YUK A;  4E2Y A;  3S1N I;  2OTL 1;  2VPX A;  2VPZ A;  2K5R A;  2R6M A;  3GTJ I;  3CC4 Z;  4AYB A;  3CCU 1;  1AA6 A;  2OTJ Z;  4E30 A;  4NB9 A;  2E2H I;  3HOV I;  2V8J A;  4BY1 I;  3CCV 1;  1N2F A;  3CCL Z;  1K73 2;  3I4M I;  2AYD A;  3G6E Z;  1S72 Z;  4A3B I;  1ML8 A;  5IP7 I;  2OOX B;  1TFI A;  2JUB A;  4EWC A;  3J7A 4;  3GCF A;  4NBF A;  3I55 1;  2VUG A;  2AKL A;  3CC7 1;  2NVQ I;  3CXC Z;  3M4O I;  3U50 C;  3K7A I;  2WAQ A;  2JIO A;  1VQ5 Z;  1X3W A;  3CC2 Z;  3ESW A;  1K9M 1;  4Y52 I;  3FQQ A;  5C4J I;  4BBR I;  1VQ6 1;  1KD1 2;  3F3F C;  3H3V J;  3S2D I;  3CCE Z;  2E9H A;  4QTT A;  2JR6 A;  3G71 Z;  2JA8 I;  1RNI A;  2Q4Z A;  3GTO I;  3IF8 A;  3PO3 I;  2JNY A;  2OTL Z;  1WCM I;  2JIP A;  3CC4 1;  2OTJ 1;  3GTL I;  2GTI A;  3CCQ Z;  2DE7 A;  3P5J B;  4A3K I;  3CCL 1;  3CCU Z;  2F4M A;  4TNU A;  3G6E 1;  3VMH A;  3CPW Y;  3CCV Z;  3VMI A;  2HU9 A;  3VTN A;  4RVF A;  2O53 A;  1JWH C;  4NBH A;  1K73 1;  1VQN Z;  2E7Z A;  3S1Q I;  1YIT Z;  4MON A;  3S2H I;  1QXF A;  3NDI A;  1RO4 A;  3OW2 Y;  1K83 I;  1K8A 1;  2IV2 X;  1VQK 1;  1RO0 A;  5IT9 b;  3I56 1;  3CC2 1;  2QRD B;  1YIJ Z;  3CC7 Z;  5FLM I;  3GTG I;  4S1T A;  2BJO A;  1M1K 1;  2Q51 A;  4NB8 A;  3S15 I;  4E2X A;  4X6A I;  1PFT A;  3G71 1;  1NP6 A;  3CCR 1;  4MH4 A;  3CCM 1;  2YAD A;  1Q16 A; 
#chains in the Genus database with same CATH homology
 2LEX A;  2AYD A;  1WJ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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