The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
172
|
structure length |
172
|
Chain Sequence |
VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the regulatory subunit of CK2 in the presence of a p21WAF1 peptide demonstrates flexibility of the acidic loop.
pubmed doi rcsb |
| molecule keywords |
Casein kinase II beta chain
|
| molecule tags |
Transferase
|
| source organism |
Xenopus laevis
|
| total genus |
51
|
| structure length |
172
|
| sequence length |
172
|
| chains with identical sequence |
B, D, E, G, H, J, K
|
| ec nomenclature |
ec
2.7.1.37: Transferred entry: 2.7.11.1, 2.7.11.8, 2.7.11.9, 2.7.11.10, 2.7.11.11, |
| pdb deposition date | 2003-12-05 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | protein kinase ck2 holoenzyme, chain C, domain 1 | protein kinase ck2 holoenzyme, chain C, domain 1 | ||
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb |
#chains in the Genus database with same CATH superfamily 4DGL A; 4MD8 A; 2JMO A; 1JWH C; 4NH1 C; 2M48 A; 4MD7 A; 4MD9 A; 1QF8 A; 2M6N A; 1RQF A; 2RT9 A; 2R6M A; 3EED A; #chains in the Genus database with same CATH topology 1NP6 A; 4A3F I; 2DE5 A; 3HOV I; 1K83 I; 3VMG A; 2NVX I; 2Y0S A; 4NBD A; 1VQ7 Z; 2W04 A; 4MXU A; 4A93 I; 4QTT A; 2GU2 A; 1VQN 1; 2QLV B; 2ZAE B; 1YIJ 1; 2KPI A; 3NH4 A; 1VQP 1; 3PO3 I; 4E30 A; 2PMZ A; 1Y8C A; 2B63 I; 3CC7 1; 2OTL Z; 1TWH I; 4BBS I; 2HU9 A; 2IZ4 A; 4BBR I; 1M90 2; 1M1K 1; 4A3C I; 2VPZ A; 5T67 A; 1VQM Z; 3U50 C; 1QF8 A; 1S72 Z; 2E7Z A; 4A3G I; 3H3V J; 1ZB9 A; 1VQ7 1; 1WCM I; 3NH5 A; 1DL6 A; 1RO0 A; 3IFU A; 1N2F A; 3P5J B; 1USP A; 1RO2 A; 1YHQ 1; 5D1O B; 1RO4 A; 3GKQ A; 3CCL Z; 3IX0 A; 2JIO A; 2AYD A; 1Q81 1; 2BJO A; 2R92 I; 2RIQ A; 5D1O A; 3CCJ 1; 2QA4 Z; 1YJW 1; 4CL1 A; 1R9T I; 2IZ3 A; 3CXC Y; 3CMA Z; 2QEX 1; 1VQM 1; 4NBB A; 1K73 1; 1PFT A; 3CXC Z; 1VQ5 Z; 3G6E Z; 3CCR Z; 1SIW A; 4MD8 A; 5T6B A; 3ESW A; 3HOW I; 2QRC B; 4A3I I; 1N8R 2; 4RVD A; 2M48 A; 1Q7Y 2; 3BG0 B; 3KIF A; 2AKL A; 4HGZ A; 3PO2 I; 3MZL B; 3D2L A; 2IV2 X; 3FQQ A; 3H0G I; 4NBE A; 2K5R A; 2LEX A; 4RVG A; 3S1R I; 3HOZ I; 1P9N A; 1QVG Z; 3I07 A; 3PO3 S; 4NFR A; 2LFU A; 1TWF I; 2R7Z I; 3JAM f; 3CC2 1; 3J80 b; 4NBA A; 3CCR 1; 4NBG A; 2Q51 A; 1Q16 A; 3CME 1; 1I3Q I; 2R6M A; 4A3B I; 3GTP I; 2JA5 I; 3CCE 1; 1L1O C; 3I55 Z; 1KC8 1; 3CCU Z; 3FQM A; 1YI2 Z; 1S7M A; 1QXF A; 3RZO I; 1Y1V I; 4E32 A; 1NUI A; 2P3Y A; 1VQ6 1; 2JIM A; 1RNI A; 1KD1 2; 3CCV 1; 2WAQ A; 5IT9 b; 1VQL Z; 3VB9 A; 3D9X A; 4NBH A; 1X3W A; 2JA6 I; 3CD6 Z; 3CCS Z; 4NOZ A; 3EED A; 1YIT Z; 3S2H I; 2JMO A; 3I55 1; 4E2Z A; 2RBL A; 2JA8 I; 1YI2 1; 5C44 I; 2F4O A; 2JUB A; 3HOX I; 2W03 A; 4E33 A; 2OOX B; 3GCF A; 4NB9 A; 4MD7 A; 2JIP A; 4E2W A; 4A3K I; 3TDH B; 2OZK A; 1VQ4 Z; 3M4O I; 2OTJ Z; 1AA6 A; 2P28 A; 1NJI 1; 3CCM Z; 3GTK I; 3D6W A; 3I56 Z; 1VQK Z; 4A3E I; 4HH4 A; 3CD6 1; 2J6A A; 1ZB8 A; 1YIT 1; 4RS4 A; 2RPR A; 2QKD A; 3BG1 B; 1QYP A; 2F4M A; 3QWU A; 2VUG A; 1USP B; 3CQZ I; 1Y1W I; 4NB8 A; 4QTU A; 2H85 A; 1K8A 2; 2O4H A; 5A2Q f; 4A3M I; 4MON A; 1Q82 2; 1I6H I; 3S1M I; 5IP9 I; 3G71 Z; 1VQ8 Z; 1M90 1; 2OTL 1; 2V8K A; 2DE7 A; 3CCM 1; 4RVF A; 3CCQ Z; 4X6A I; 2JS4 A; 2EGT A; 3G4S Z; 1S72 1; 2M6N A; 1K9M 1; 2NVQ I; 2E2I I; 2HF1 A; 3CC4 Z; 4AYB A; 3GTM I; 3NFZ A; 3CCL 1; 2PM9 A; 2QA4 1; 4NBC A; 1QVG Y; 1YUA A; 1WW9 A; 4DGL A; 1WJ2 A; 3CMA 1; 1SFO I; 2NVY I; 1VQ5 1; 4E31 A; 2JIR A; 3G6E 1; 1Q7Y 1; 2VPY A; 3J80 f; 1VQ9 Z; 3J81 f; 4E2Y A; 1Z01 A; 5AN9 F; 3RZD I; 1YJ9 Z; 2JA7 I; 2G2K A; 4Y52 I; 3VMI A; 1LQL A; 2V3V A; 2YU9 I; 1Q86 2; 1Z02 A; 2RT9 A; 3JAM b; 2VPX A; 2QRD B; 1RLY A; 2PK7 A; 5FLX b; 3GTQ I; 1VQ9 1; 3HOU I; 1KRL A; 5C4J I; 2LIY A; 4DQY B; 1QVF Y; 4MD9 A; 1Z03 A; 3MON A; 5IT9 f; 1QVF Z; 1VQN Z; 1W2B Y; 1JWH C; 2NVT I; 1YIJ Z; 1VQP Z; 1JJ2 Y; 3CPW Y; 3CCU 1; 3OW2 Y; 1KQS Y; 3GTL I; 1VQO Z; 1W2B Z; 2NAP A; 3CC7 Z; 3CPW Z; 1JJ2 Z; 3OW2 Z; 2OOY B; 2WB1 A; 1KQS Z; 2VUM I; 3S14 I; 1KD1 1; 2YAD A; 3I4M I; 3S1Q I; 1WII A; 2GTI A; 1M1K 2; 3GTG I; 1VQL 1; 2VPW A; 3IR7 A; 4EWC A; 2JIQ A; 1FDO A; 4DK1 A; 2V45 A; 3CCS 1; 4BY1 I; 3M3Y I; 2O53 A; 5CM2 M; 1YHQ Z; 2E2J I; 3NDI A; 4NH1 C; 4A3J I; 4TNU A; 1VQO 1; 3CCJ Z; 1Q81 2; 1YJW Z; 5LL6 f; 1I50 I; 1X3Z A; 3K7A I; 1VQ4 1; 2OTJ 1; 1ZH1 A; 2QEX Z; 4BY7 I; 1ML8 A; 4E2X A; 2KI7 B; 3HOY I; 4MH4 A; 3I56 1; 2VF1 A; 1VQK 1; 1K73 2; 1VLA A; 5FLM I; 1TWC I; 1Y1V S; 1K9M 2; 2QR1 B; 5A2Q b; 1K8A 1; 1FDI A; 3TE5 B; 3VMH A; 2R93 I; 4S1T A; 4Y7N I; 4MRI A; 3KIH A; 1Q82 1; 3S16 I; 3EER A; 3G71 1; 1YJN Z; 3NDJ A; 1VQ8 1; 2V8I A; 3CCQ 1; 3CC2 Z; 3CME Z; 3G4S 1; 4XX2 A; 3IF8 A; 2RHB A; 3Q87 A; 1N8R 1; 5C4X I; 2V8J A; 3GTJ I; 1TWA I; 2JR6 A; 3S1N I; 2I3C A; 3CC4 1; 3CCE Z; 4RV9 A; 1WZN A; 5C3E I; 4BXX I; 1YJN 1; 4A3D I; 5IP7 I; 1KC8 2; 4A3L I; 4NBF A; 2Q4Z A; 3S17 I; 2E9H A; 3F3F C; 3MZK B; 5T64 A; 3I4N I; 1TWG I; 3LUS A; 3J81 b; 1TFI A; 5FLX f; 3GTO I; 1VQ6 Z; 4RVH A; 3NH8 A; 3T4N B; 3CCV Z; 1YJ9 1; 3S15 I; 3S2D I; 2QRE B; 4HGY A; 1YUK A; 3F3P C; 2JNY A; 3VTN A; 1Q86 1; 1RQF A; 3HKZ A; 3GTM S; 2GTH A; 5D1P A; 2DE6 A; 2K3R A; 1X0T A; 3FKI I; 2E2H I; 3J7A 4; 1NJI 2; #chains in the Genus database with same CATH homology 1NP6 A; 4A3F I; 2DE5 A; 3HOV I; 1K83 I; 3VMG A; 2NVX I; 2Y0S A; 4NBD A; 1VQ7 Z; 2W04 A; 4MXU A; 4A93 I; 4QTT A; 2GU2 A; 1VQN 1; 2QLV B; 2ZAE B; 1YIJ 1; 2KPI A; 3NH4 A; 1VQP 1; 3PO3 I; 4E30 A; 2PMZ A; 2B63 I; 3CC7 1; 2OTL Z; 1TWH I; 4BBS I; 2HU9 A; 2IZ4 A; 4BBR I; 1M90 2; 1M1K 1; 4A3C I; 5T67 A; 1VQM Z; 3U50 C; 1QF8 A; 1S72 Z; 4A3G I; 3H3V J; 1ZB9 A; 1VQ7 1; 1WCM I; 3NH5 A; 1DL6 A; 1RO0 A; 3IFU A; 1N2F A; 3P5J B; 1USP A; 1RO2 A; 1YHQ 1; 5D1O B; 1RO4 A; 3GKQ A; 3CCL Z; 3IX0 A; 1Q81 1; 2BJO A; 2R92 I; 2RIQ A; 5D1O A; 3CCJ 1; 2QA4 Z; 1YJW 1; 4CL1 A; 1R9T I; 2IZ3 A; 3CXC Y; 3CMA Z; 2QEX 1; 1VQM 1; 4NBB A; 1K73 1; 1PFT A; 3CXC Z; 1VQ5 Z; 3G6E Z; 3CCR Z; 4MD8 A; 5T6B A; 3ESW A; 3HOW I; 2QRC B; 4A3I I; 1N8R 2; 4RVD A; 2M48 A; 1Q7Y 2; 3BG0 B; 3KIF A; 2AKL A; 4HGZ A; 3PO2 I; 3MZL B; 3FQQ A; 3H0G I; 4NBE A; 2K5R A; 4RVG A; 3S1R I; 3HOZ I; 1P9N A; 1QVG Z; 3I07 A; 3PO3 S; 4NFR A; 2LFU A; 1TWF I; 2R7Z I; 3JAM f; 3CC2 1; 3J80 b; 4NBA A; 3CCR 1; 4NBG A; 2Q51 A; 3CME 1; 1I3Q I; 2R6M A; 4A3B I; 3GTP I; 2JA5 I; 3CCE 1; 1L1O C; 3I55 Z; 1KC8 1; 3CCU Z; 3FQM A; 1YI2 Z; 1S7M A; 3RZO I; 1Y1V I; 4E32 A; 1NUI A; 2P3Y A; 1VQ6 1; 1RNI A; 1KD1 2; 3CCV 1; 2WAQ A; 5IT9 b; 1VQL Z; 3VB9 A; 3D9X A; 4NBH A; 1X3W A; 2JA6 I; 3CD6 Z; 3CCS Z; 4NOZ A; 3EED A; 1YIT Z; 3S2H I; 2JMO A; 3I55 1; 4E2Z A; 2RBL A; 2JA8 I; 1YI2 1; 5C44 I; 2F4O A; 2JUB A; 3HOX I; 2W03 A; 4E33 A; 2OOX B; 3GCF A; 4NB9 A; 4MD7 A; 4E2W A; 4A3K I; 3TDH B; 2OZK A; 1VQ4 Z; 3M4O I; 2OTJ Z; 2P28 A; 1NJI 1; 3CCM Z; 3GTK I; 3D6W A; 3I56 Z; 1VQK Z; 4A3E I; 4HH4 A; 3CD6 1; 2J6A A; 1ZB8 A; 1YIT 1; 4RS4 A; 2RPR A; 2QKD A; 3BG1 B; 1QYP A; 2F4M A; 3QWU A; 2VUG A; 1USP B; 3CQZ I; 1Y1W I; 4NB8 A; 4QTU A; 2H85 A; 1K8A 2; 2O4H A; 5A2Q f; 4A3M I; 4MON A; 1Q82 2; 1I6H I; 3S1M I; 5IP9 I; 3G71 Z; 1VQ8 Z; 1M90 1; 2OTL 1; 2V8K A; 2DE7 A; 3CCM 1; 4RVF A; 3CCQ Z; 4X6A I; 2JS4 A; 2EGT A; 3G4S Z; 1S72 1; 2M6N A; 1K9M 1; 2NVQ I; 2E2I I; 2HF1 A; 3CC4 Z; 4AYB A; 3GTM I; 3NFZ A; 3CCL 1; 2PM9 A; 2QA4 1; 4NBC A; 1QVG Y; 1YUA A; 1WW9 A; 4DGL A; 3CMA 1; 1SFO I; 2NVY I; 1VQ5 1; 4E31 A; 3G6E 1; 1Q7Y 1; 3J80 f; 1VQ9 Z; 3J81 f; 4E2Y A; 1Z01 A; 5AN9 F; 3RZD I; 1YJ9 Z; 2JA7 I; 2G2K A; 4Y52 I; 3VMI A; 1LQL A; 2YU9 I; 1Q86 2; 1Z02 A; 2RT9 A; 3JAM b; 2QRD B; 1RLY A; 2PK7 A; 5FLX b; 3GTQ I; 1VQ9 1; 3HOU I; 1KRL A; 5C4J I; 2LIY A; 4DQY B; 1QVF Y; 4MD9 A; 1Z03 A; 3MON A; 5IT9 f; 1QVF Z; 1VQN Z; 1W2B Y; 1JWH C; 2NVT I; 1YIJ Z; 1VQP Z; 1JJ2 Y; 3CPW Y; 3CCU 1; 3OW2 Y; 1KQS Y; 3GTL I; 1VQO Z; 1W2B Z; 3CC7 Z; 3CPW Z; 1JJ2 Z; 3OW2 Z; 2OOY B; 2WB1 A; 1KQS Z; 2VUM I; 3S14 I; 1KD1 1; 2YAD A; 3I4M I; 3S1Q I; 1WII A; 2GTI A; 1M1K 2; 3GTG I; 1VQL 1; 4EWC A; 4DK1 A; 3CCS 1; 4BY1 I; 3M3Y I; 2O53 A; 5CM2 M; 1YHQ Z; 2E2J I; 3NDI A; 4NH1 C; 4A3J I; 4TNU A; 1VQO 1; 3CCJ Z; 1Q81 2; 1YJW Z; 5LL6 f; 1I50 I; 1X3Z A; 3K7A I; 1VQ4 1; 2OTJ 1; 1ZH1 A; 2QEX Z; 4BY7 I; 1ML8 A; 4E2X A; 2KI7 B; 3HOY I; 4MH4 A; 3I56 1; 2VF1 A; 1VQK 1; 1K73 2; 1VLA A; 5FLM I; 1TWC I; 1Y1V S; 1K9M 2; 2QR1 B; 5A2Q b; 1K8A 1; 3TE5 B; 3VMH A; 2R93 I; 4S1T A; 4Y7N I; 4MRI A; 3KIH A; 1Q82 1; 3S16 I; 3EER A; 3G71 1; 1YJN Z; 3NDJ A; 1VQ8 1; 2V8I A; 3CCQ 1; 3CC2 Z; 3CME Z; 3G4S 1; 4XX2 A; 3IF8 A; 2RHB A; 3Q87 A; 1N8R 1; 5C4X I; 2V8J A; 3GTJ I; 1TWA I; 2JR6 A; 3S1N I; 2I3C A; 3CC4 1; 3CCE Z; 4RV9 A; 5C3E I; 4BXX I; 1YJN 1; 4A3D I; 5IP7 I; 1KC8 2; 4A3L I; 4NBF A; 2Q4Z A; 3S17 I; 2E9H A; 3F3F C; 3MZK B; 5T64 A; 3I4N I; 1TWG I; 3LUS A; 3J81 b; 1TFI A; 5FLX f; 3GTO I; 1VQ6 Z; 4RVH A; 3NH8 A; 3T4N B; 3CCV Z; 1YJ9 1; 3S15 I; 3S2D I; 2QRE B; 4HGY A; 1YUK A; 3F3P C; 2JNY A; 3VTN A; 1Q86 1; 1RQF A; 3HKZ A; 3GTM S; 2GTH A; 5D1P A; 2DE6 A; 2K3R A; 1X0T A; 3FKI I; 2E2H I; 3J7A 4; 1NJI 2;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
