1WJ2 | Genus

Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	5
sequence length	71
structure length	71
Chain Sequence	VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfc5a4c151889812f849366/pdb.gz

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Dna binding protein
source organism	Arabidopsis thaliana
publication title	Solution structure of an Arabidopsis WRKY DNA binding domain. pubmed doi rcsb
molecule keywords	Probable WRKY transcription factor 4
total genus	5
structure length	71
sequence length	71
ec nomenclature
pdb deposition date	2004-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03106	WRKY	WRKY DNA -binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.25.80	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	WRKY domain	1wj2A00

1WJ2A 2LEXA 2AYDA
chains in the Genus database with same CATH superfamily

1K732 4RVHA 4NH1C 4EWCA 3G4S1 2Q4ZA 4NB9A 4A3LI 1Q862 4RVGA 1VQN1 3S1NI 1P9NA 3S1MI 1AA6A 3CCV1 2QLVB 3CC7Z 1YIJ1 3KIHA 2VUMI 3VTNA 5A2Qb 3IX0A 2QR1B 3J81f 3T4NB 2I3CA 3S14I 4NBGA 1QYPA 1Y1VS 1K83I 2OOYB 2HU9A 3IFUA 2RBLA 3GTJI 1Z02A 2V3VA 1W2BY 1ZB9A 2NVYI 4MONA 5FLXb 3TE5B 3CCQ1 3BG0B 4A3BI 5T64A 3IF8A 4NBAA 2B63I 3CD61 3CC4Z 3I561 3CCJ1 5C3EI 3I07A 1WW9A 1SIWA 3D9XA 1FDIA 3G6EZ 3S1QI 1VQ51 3GKQA 4A3DI 4DK1A 1VQL1 2P3YA 1VQ41 5IP9I 2YADA 4RVFA 1N2FA 4BY1I 1JWHC 1RO0A 1VQNZ 3NDIA 1YJWZ 3RZOI 2JIMA 1ZB8A 4RV9A 3BG1B 3VMGA 2E2JI 2K3RA 2WB1A 5FLMI 2H85A 2IV2X 3S16I 1YI2Z 1Q7Y1 3GTPI 2RPRA 5IT9f 2GU2A 3CCU1 2JMOA 2Y0SA 3CCR1 3VMHA 3PO2I 1NP6A 4HH4A 1YITZ 2O53A 4A3MI 2OTJZ 4NBEA 4E31A 1YJ9Z 4BBRI 2W04A 3H0GI 2RHBA 3CME1 1M1K1 4E33A 1VQ6Z 3D2LA 5A2Qf 1YUKA 3HOXI 1LQLA 3I55Z 3GTOI 3G71Z 5LL6f 4Y52I 1YJN1 4NBDA 1USPB 4TNUA 3CPWY 2QRCB 3FQMA 4E2WA 3CCL1 4NFRA 2E2II 1KRLA 3VB9A 5FLXf 1QVFY 2P28A 1Q7Y2 1VQOZ 3JAMf 5IT9b 2KI7B 1Y1VI 2JR6A 2M48A 2OTLZ 2KPIA 2LEXA 2ZAEB 2R6MA 5C4XI 4A3FI 2NVXI 2R92I 2EGTA 2PMZA 5D1OB 2QA4Z 1I50I 2E7ZA 4A3II 1S72Z 3S15I 3HKZA 2VUGA 1Z03A 1M1K2 1VQMZ 3CXCZ 3GTMS 3PO3I 1QVGZ 3MZKB 1WIIA 4HGZA 2LIYA 4HGYA 1N8R1 1WJ2A 2G2KA 3KIFA 1VQ91 3HOZI 3CMEZ 4X6AI 3I4MI 2JIPA 1QF8A 3JAMb 3CCMZ 1TWGI 2VPXA 4A3JI 3CCE1 2V8JA 1VQPZ 2NVTI 1RNIA 3CC2Z 4A3KI 1W2BZ 1S7MA 1YUAA 4S1TA 1TWAI 2IZ4A 1YHQZ 1VQ71 4DGLA 3CQZI 2JIQA 4MH4A 5CM2M 1KQSY 1VQ81 3HOVI 2QEX1 3G4SZ 3S17I 2R93I 1Y8CA 3NH8A 2JIRA 1Q821 1Q16A 2RIQA 3CCVZ 1X3WA 1N8R2 2BJOA 2OOXB 3CCS1 1YIJZ 3QWUA 3NH5A 4MD7A 1KC81 1RO4A 2IZ3A 1KD11 1JJ2Z 4E2XA 5IP7I 3HOUI 3F3FC 2JA5I 2LFUA 3ESWA 4RS4A 2K5RA 3NDJA 3K7AI 1RO2A 3M3YI 3CCQZ 3NH4A 3OW2Z 2DE5A 3CD6Z 3EEDA 3I56Z 3CCJZ 3CC71 4NBBA 5T67A 4E32A 4NBCA 1FDOA 4A93I 2QREB 4NBHA 4E2ZA 2F4OA 1Q822 2VPYA 2GTHA 2O4HA 1Q812 1VQ5Z 2QEXZ 3P5JB 4Y7NI 1VQLZ 1KC82 4MD9A 1VQ4Z 1KD12 3GTMI 3NFZA 4BY7I 3I4NI 2JS4A 1TWFI 1I6HI 3J80b 1X0TA 3CC41 1RLYA 3Q87A 2VF1A 4E2YA 3CMA1 2E9HA 4A3EI 4NOZA 3VMIA 2QRDB 4E30A 1ML8A 2JA7I 3CCUZ 3GTKI 3CCRZ 2V8KA 4XX2A 2JA8I 3CXCY 4CL1A 1YJW1 1Y1WI 1QVGY 3GTQI 5C44I 1R9TI 2JIOA 4NBFA 1VLAA 2WAQA 4MXUA 1NUIA 1QXFA 3RZDI 2VPZA 4A3GI 1DL6A 1YI21 1YJNZ 2PM9A 5D1PA 3CCLZ 1Z01A 2JA6I 2OZKA 2HF1A 4BBSI 1TWCI 1USPA 2NVQI 1K8A1 2NAPA 3TDHB 3J7A4 1YIT1 3D6WA 2OTJ1 1YJ91 4AYBA 4QTTA 3HOYI 3S1RI 1KQSZ 1VQ61 1NJI1 2JNYA 3PO3S 3CMAZ 3FKII 3S2DI 3GTGI 1Q811 3I551 1VQK1 3G711 2W03A 4DQYB 2DE7A 2YU9I 2M6NA 2J6AA 3EERA 5D1OA 3J81b 1K9M1 3IR7A 1ZH1A 1TFIA 3FQQA 3M4OI 1I3QI 2Q51A 1JJ2Y 1VQO1 1M901 3J80f 4MD8A 2OTL1 4RVDA 2E2HI 3H3VJ 1VQ9Z 3GTLI 5T6BA 3GCFA 4MRIA 1K8A2 3CCEZ 1K731 4BXXI 2QA41 3LUSA 1TWHI 3OW2Y 1WZNA 2AYDA 2DE6A 1S721 2QKDA 1VQ7Z 5C4JI 1VQM1 1Q861 1SFOI 2V8IA 1NJI2 3MONA 1L1OC 1VQ8Z 1PFTA 3HOWI 2PK7A 2R7ZI 3MZLB 4A3CI 1X3ZA 2JUBA 1K9M2 2RT9A 3CCM1 4QTUA 1M902 2AKLA 3CPWZ 1VQP1 1VQKZ 3CC21 3CCSZ 5AN9F 2F4MA 2VPWA 3S2HI 3U50C 1WCMI 3F3PC 1QVFZ 3G6E1 1YHQ1 2GTIA 2V45A 1RQFA 4NB8A
chains in the Genus database with same CATH topology

1WJ2A 2LEXA 2AYDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1WJ2 A;  2LEX A;  2AYD A; 
#chains in the Genus database with same CATH topology
 1K73 2;  4RVH A;  4NH1 C;  4EWC A;  3G4S 1;  2Q4Z A;  4NB9 A;  4A3L I;  1Q86 2;  4RVG A;  1VQN 1;  3S1N I;  1P9N A;  3S1M I;  1AA6 A;  3CCV 1;  2QLV B;  3CC7 Z;  1YIJ 1;  3KIH A;  2VUM I;  3VTN A;  5A2Q b;  3IX0 A;  2QR1 B;  3J81 f;  3T4N B;  2I3C A;  3S14 I;  4NBG A;  1QYP A;  1Y1V S;  1K83 I;  2OOY B;  2HU9 A;  3IFU A;  2RBL A;  3GTJ I;  1Z02 A;  2V3V A;  1W2B Y;  1ZB9 A;  2NVY I;  4MON A;  5FLX b;  3TE5 B;  3CCQ 1;  3BG0 B;  4A3B I;  5T64 A;  3IF8 A;  4NBA A;  2B63 I;  3CD6 1;  3CC4 Z;  3I56 1;  3CCJ 1;  5C3E I;  3I07 A;  1WW9 A;  1SIW A;  3D9X A;  1FDI A;  3G6E Z;  3S1Q I;  1VQ5 1;  3GKQ A;  4A3D I;  4DK1 A;  1VQL 1;  2P3Y A;  1VQ4 1;  5IP9 I;  2YAD A;  4RVF A;  1N2F A;  4BY1 I;  1JWH C;  1RO0 A;  1VQN Z;  3NDI A;  1YJW Z;  3RZO I;  2JIM A;  1ZB8 A;  4RV9 A;  3BG1 B;  3VMG A;  2E2J I;  2K3R A;  2WB1 A;  5FLM I;  2H85 A;  2IV2 X;  3S16 I;  1YI2 Z;  1Q7Y 1;  3GTP I;  2RPR A;  5IT9 f;  2GU2 A;  3CCU 1;  2JMO A;  2Y0S A;  3CCR 1;  3VMH A;  3PO2 I;  1NP6 A;  4HH4 A;  1YIT Z;  2O53 A;  4A3M I;  2OTJ Z;  4NBE A;  4E31 A;  1YJ9 Z;  4BBR I;  2W04 A;  3H0G I;  2RHB A;  3CME 1;  1M1K 1;  4E33 A;  1VQ6 Z;  3D2L A;  5A2Q f;  1YUK A;  3HOX I;  1LQL A;  3I55 Z;  3GTO I;  3G71 Z;  5LL6 f;  4Y52 I;  1YJN 1;  4NBD A;  1USP B;  4TNU A;  3CPW Y;  2QRC B;  3FQM A;  4E2W A;  3CCL 1;  4NFR A;  2E2I I;  1KRL A;  3VB9 A;  5FLX f;  1QVF Y;  2P28 A;  1Q7Y 2;  1VQO Z;  3JAM f;  5IT9 b;  2KI7 B;  1Y1V I;  2JR6 A;  2M48 A;  2OTL Z;  2KPI A;  2LEX A;  2ZAE B;  2R6M A;  5C4X I;  4A3F I;  2NVX I;  2R92 I;  2EGT A;  2PMZ A;  5D1O B;  2QA4 Z;  1I50 I;  2E7Z A;  4A3I I;  1S72 Z;  3S15 I;  3HKZ A;  2VUG A;  1Z03 A;  1M1K 2;  1VQM Z;  3CXC Z;  3GTM S;  3PO3 I;  1QVG Z;  3MZK B;  1WII A;  4HGZ A;  2LIY A;  4HGY A;  1N8R 1;  1WJ2 A;  2G2K A;  3KIF A;  1VQ9 1;  3HOZ I;  3CME Z;  4X6A I;  3I4M I;  2JIP A;  1QF8 A;  3JAM b;  3CCM Z;  1TWG I;  2VPX A;  4A3J I;  3CCE 1;  2V8J A;  1VQP Z;  2NVT I;  1RNI A;  3CC2 Z;  4A3K I;  1W2B Z;  1S7M A;  1YUA A;  4S1T A;  1TWA I;  2IZ4 A;  1YHQ Z;  1VQ7 1;  4DGL A;  3CQZ I;  2JIQ A;  4MH4 A;  5CM2 M;  1KQS Y;  1VQ8 1;  3HOV I;  2QEX 1;  3G4S Z;  3S17 I;  2R93 I;  1Y8C A;  3NH8 A;  2JIR A;  1Q82 1;  1Q16 A;  2RIQ A;  3CCV Z;  1X3W A;  1N8R 2;  2BJO A;  2OOX B;  3CCS 1;  1YIJ Z;  3QWU A;  3NH5 A;  4MD7 A;  1KC8 1;  1RO4 A;  2IZ3 A;  1KD1 1;  1JJ2 Z;  4E2X A;  5IP7 I;  3HOU I;  3F3F C;  2JA5 I;  2LFU A;  3ESW A;  4RS4 A;  2K5R A;  3NDJ A;  3K7A I;  1RO2 A;  3M3Y I;  3CCQ Z;  3NH4 A;  3OW2 Z;  2DE5 A;  3CD6 Z;  3EED A;  3I56 Z;  3CCJ Z;  3CC7 1;  4NBB A;  5T67 A;  4E32 A;  4NBC A;  1FDO A;  4A93 I;  2QRE B;  4NBH A;  4E2Z A;  2F4O A;  1Q82 2;  2VPY A;  2GTH A;  2O4H A;  1Q81 2;  1VQ5 Z;  2QEX Z;  3P5J B;  4Y7N I;  1VQL Z;  1KC8 2;  4MD9 A;  1VQ4 Z;  1KD1 2;  3GTM I;  3NFZ A;  4BY7 I;  3I4N I;  2JS4 A;  1TWF I;  1I6H I;  3J80 b;  1X0T A;  3CC4 1;  1RLY A;  3Q87 A;  2VF1 A;  4E2Y A;  3CMA 1;  2E9H A;  4A3E I;  4NOZ A;  3VMI A;  2QRD B;  4E30 A;  1ML8 A;  2JA7 I;  3CCU Z;  3GTK I;  3CCR Z;  2V8K A;  4XX2 A;  2JA8 I;  3CXC Y;  4CL1 A;  1YJW 1;  1Y1W I;  1QVG Y;  3GTQ I;  5C44 I;  1R9T I;  2JIO A;  4NBF A;  1VLA A;  2WAQ A;  4MXU A;  1NUI A;  1QXF A;  3RZD I;  2VPZ A;  4A3G I;  1DL6 A;  1YI2 1;  1YJN Z;  2PM9 A;  5D1P A;  3CCL Z;  1Z01 A;  2JA6 I;  2OZK A;  2HF1 A;  4BBS I;  1TWC I;  1USP A;  2NVQ I;  1K8A 1;  2NAP A;  3TDH B;  3J7A 4;  1YIT 1;  3D6W A;  2OTJ 1;  1YJ9 1;  4AYB A;  4QTT A;  3HOY I;  3S1R I;  1KQS Z;  1VQ6 1;  1NJI 1;  2JNY A;  3PO3 S;  3CMA Z;  3FKI I;  3S2D I;  3GTG I;  1Q81 1;  3I55 1;  1VQK 1;  3G71 1;  2W03 A;  4DQY B;  2DE7 A;  2YU9 I;  2M6N A;  2J6A A;  3EER A;  5D1O A;  3J81 b;  1K9M 1;  3IR7 A;  1ZH1 A;  1TFI A;  3FQQ A;  3M4O I;  1I3Q I;  2Q51 A;  1JJ2 Y;  1VQO 1;  1M90 1;  3J80 f;  4MD8 A;  2OTL 1;  4RVD A;  2E2H I;  3H3V J;  1VQ9 Z;  3GTL I;  5T6B A;  3GCF A;  4MRI A;  1K8A 2;  3CCE Z;  1K73 1;  4BXX I;  2QA4 1;  3LUS A;  1TWH I;  3OW2 Y;  1WZN A;  2AYD A;  2DE6 A;  1S72 1;  2QKD A;  1VQ7 Z;  5C4J I;  1VQM 1;  1Q86 1;  1SFO I;  2V8I A;  1NJI 2;  3MON A;  1L1O C;  1VQ8 Z;  1PFT A;  3HOW I;  2PK7 A;  2R7Z I;  3MZL B;  4A3C I;  1X3Z A;  2JUB A;  1K9M 2;  2RT9 A;  3CCM 1;  4QTU A;  1M90 2;  2AKL A;  3CPW Z;  1VQP 1;  1VQK Z;  3CC2 1;  3CCS Z;  5AN9 F;  2F4M A;  2VPW A;  3S2H I;  3U50 C;  1WCM I;  3F3P C;  1QVF Z;  3G6E 1;  1YHQ 1;  2GTI A;  2V45 A;  1RQF A;  4NB8 A; 
#chains in the Genus database with same CATH homology
 1WJ2 A;  2LEX A;  2AYD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WJ2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations