2AYD | Genus

Total Genus 15

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	76
structure length	76
Chain Sequence	SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription
source organism	Arabidopsis thaliana
publication title	DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein. pubmed doi rcsb
molecule keywords	WRKY transcription factor 1
total genus	15
structure length	76
sequence length	76
ec nomenclature
pdb deposition date	2005-09-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03106	WRKY	WRKY DNA -binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.25.80	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	WRKY domain	2aydA01

2LEXA 1WJ2A 2AYDA
chains in the Genus database with same CATH superfamily

2NVXI 3CXCY 5D1OB 4MXUA 3G711 1W2BY 4X6AI 1QVGY 1SIWA 1N8R2 4RVDA 3GTLI 3KIHA 1RLYA 1I6HI 4E32A 4E31A 3EEDA 4A3MI 1VQ41 3GTOI 3M4OI 1Z02A 2F4MA 1JJ2Z 3LUSA 4EWCA 1VQN1 5T64A 1QVFY 3I55Z 1VLAA 4RV9A 2OTJ1 4A3KI 1Q16A 3FQMA 2QRCB 4MD8A 5D1PA 3D9XA 1I50I 3HOXI 3NH5A 3G4SZ 3PO3I 2YADA 4CL1A 3J81f 1X0TA 4NBFA 1VQ6Z 3I56Z 3QWUA 1VQ5Z 2Q4ZA 1JJ2Y 2HF1A 3CCUZ 3VB9A 3CD61 4NB8A 3CC41 3CCLZ 2QR1B 1M902 1Y1VI 4BBRI 3S15I 2RT9A 2IV2X 3RZOI 1JWHC 4DQYB 4RVGA 2DE7A 1K9M1 2NVYI 4RVHA 5C4XI 2JIMA 4XX2A 3NH4A 1YI2Z 2P3YA 4HGZA 4QTUA 2O4HA 4NFRA 3NDIA 3CCMZ 5T67A 4BBSI 3CCE1 2V45A 3S16I 1VQ7Z 3S2DI 3G6E1 3S1MI 3I4MI 1VQM1 4NBBA 3FKII 4QTTA 4DK1A 1VQL1 2JA6I 3GTPI 3OW2Z 1M1K2 1VQ81 2H85A 1K732 2LFUA 1YJW1 3CCVZ 3P5JB 3I07A 1WW9A 1YIT1 1Z01A 3CC7Z 1VQO1 1YJWZ 2LIYA 1TWCI 2JR6A 2R6MA 2QA41 1TWFI 3JAMb 2OOXB 2AKLA 3IFUA 2R7ZI 3CCQ1 1Q811 3CCJZ 1TFIA 1USPB 4HGYA 1YIJ1 3FQQA 3VMIA 2JUBA 1YJN1 3OW2Y 3G71Z 1USPA 3CC21 1Q822 1SFOI 3CCR1 2JIRA 2GTHA 1DL6A 1NUIA 2RIQA 1KC82 3CCRZ 1FDOA 5IP9I 2KI7B 2Q51A 3IR7A 3RZDI 1VQ4Z 4AYBA 1WIIA 1RO2A 1PFTA 1VQNZ 2QLVB 1VQ91 2O53A 1WZNA 2VPYA 2JIOA 1NJI2 2E2JI 1Q7Y2 2OTJZ 2R92I 3NFZA 2JIQA 4E30A 5FLXf 1Z03A 1VQK1 2PM9A 1K8A1 4A3JI 2JA5I 1M901 2M48A 2JMOA 3NDJA 3GKQA 2B63I 3VTNA 3D6WA 3KIFA 4A3DI 1R9TI 1RO4A 1YUKA 3IF8A 3GCFA 3CD6Z 2V3VA 3HOWI 2AYDA 3CC4Z 3JAMf 1Q861 3IX0A 4Y52I 3HOYI 3GTGI 3D2LA 2JA7I 2JIPA 2VUGA 3CMA1 2YU9I 2VUMI 3HOVI 2IZ3A 2JS4A 5IT9f 3GTMS 2V8KA 2RPRA 2E7ZA 4NBAA 5A2Qf 3PO2I 5LL6f 5FLMI 1ML8A 3U50C 3S14I 2NAPA 4BY7I 3CCEZ 1VQP1 3HOZI 2OTL1 2PK7A 5FLXb 3BG1B 3G6EZ 3S2HI 3HOUI 1K731 1TWGI 3J80f 3GTQI 4E2ZA 1K9M2 1VQMZ 2K3RA 3CME1 1VQLZ 5AN9F 2RBLA 3H3VJ 2E9HA 4NOZA 2WB1A 2KPIA 1VQ8Z 4NBGA 4E2XA 3I4NI 3TDHB 2DE6A 1YITZ 3HKZA 3GTMI 3S17I 2V8IA 1VQOZ 2J6AA 2K5RA 2QA4Z 1N8R1 2HU9A 1TWAI 4MRIA 1N2FA 3ESWA 4BXXI 1Y8CA 3CCQZ 3TE5B 3M3YI 3K7AI 3MZLB 1NP6A 3CQZI 1YIJZ 3CCS1 5IT9b 2QREB 5A2Qb 1YJNZ 1KD12 3EERA 3CC2Z 1FDIA 5C4JI 2DE5A 4E2WA 2VPZA 1TWHI 5CM2M 3PO3S 1NJI1 4A3EI 1RQFA 1AA6A 1Q812 2WAQA 4TNUA 2OZKA 1Q7Y1 3J80b 5D1OA 2G2KA 5IP7I 4BY1I 4RVFA 1ZB8A 3Q87A 2GU2A 1VQ9Z 1QF8A 2BJOA 4NBDA 1Y1VS 3CPWZ 3BG0B 3I551 2NVTI 1KQSZ 2PMZA 3GTKI 1QYPA 1VQKZ 4A3BI 2QEX1 3F3FC 2W03A 4A93I 2R93I 3G4S1 4E33A 2QEXZ 4NBHA 1VQ61 3I561 2JNYA 1VQ51 3VMGA 3J7A4 2NVQI 2QKDA 2QRDB 3CCU1 1LQLA 4MD9A 2ZAEB 1YJ91 3CCL1 4NB9A 4A3LI 3CPWY 1ZB9A 1K83I 1RNIA 1YJ9Z 2VPWA 4MD7A 1K8A2 3CMAZ 1S721 1KQSY 1I3QI 2V8JA 2JA8I 3MZKB 3VMHA 4MH4A 4NBEA 1P9NA 1S72Z 1X3WA 1ZH1A 3NH8A 4A3FI 4HH4A 1M1K1 1YI21 2E2HI 1Q862 1VQPZ 2IZ4A 1YHQ1 3CCM1 2F4OA 1Y1WI 2M6NA 3S1NI 2OTLZ 4DGLA 4Y7NI 3GTJI 1YHQZ 1VQ71 4A3GI 2OOYB 4A3CI 4RS4A 2LEXA 3S1RI 2W04A 2Y0SA 3CMEZ 4NH1C 2E2II 5C3EI 3CXCZ 1W2BZ 1WCMI 2I3CA 2EGTA 5C44I 1QVGZ 3J81b 1S7MA 4A3II 4MONA 2VPXA 2VF1A 3CCV1 1Q821 1L1OC 1KRLA 3H0GI 1WJ2A 1KD11 3CC71 2RHBA 1QXFA 1KC81 4E2YA 2GTIA 3MONA 4S1TA 5T6BA 4NBCA 1X3ZA 3CCJ1 1QVFZ 2P28A 3CCSZ 1RO0A 3F3PC 1YUAA 3T4NB 3S1QI
chains in the Genus database with same CATH topology

2LEXA 1WJ2A 2AYDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LEX A;  1WJ2 A;  2AYD A; 
#chains in the Genus database with same CATH topology
 2NVX I;  3CXC Y;  5D1O B;  4MXU A;  3G71 1;  1W2B Y;  4X6A I;  1QVG Y;  1SIW A;  1N8R 2;  4RVD A;  3GTL I;  3KIH A;  1RLY A;  1I6H I;  4E32 A;  4E31 A;  3EED A;  4A3M I;  1VQ4 1;  3GTO I;  3M4O I;  1Z02 A;  2F4M A;  1JJ2 Z;  3LUS A;  4EWC A;  1VQN 1;  5T64 A;  1QVF Y;  3I55 Z;  1VLA A;  4RV9 A;  2OTJ 1;  4A3K I;  1Q16 A;  3FQM A;  2QRC B;  4MD8 A;  5D1P A;  3D9X A;  1I50 I;  3HOX I;  3NH5 A;  3G4S Z;  3PO3 I;  2YAD A;  4CL1 A;  3J81 f;  1X0T A;  4NBF A;  1VQ6 Z;  3I56 Z;  3QWU A;  1VQ5 Z;  2Q4Z A;  1JJ2 Y;  2HF1 A;  3CCU Z;  3VB9 A;  3CD6 1;  4NB8 A;  3CC4 1;  3CCL Z;  2QR1 B;  1M90 2;  1Y1V I;  4BBR I;  3S15 I;  2RT9 A;  2IV2 X;  3RZO I;  1JWH C;  4DQY B;  4RVG A;  2DE7 A;  1K9M 1;  2NVY I;  4RVH A;  5C4X I;  2JIM A;  4XX2 A;  3NH4 A;  1YI2 Z;  2P3Y A;  4HGZ A;  4QTU A;  2O4H A;  4NFR A;  3NDI A;  3CCM Z;  5T67 A;  4BBS I;  3CCE 1;  2V45 A;  3S16 I;  1VQ7 Z;  3S2D I;  3G6E 1;  3S1M I;  3I4M I;  1VQM 1;  4NBB A;  3FKI I;  4QTT A;  4DK1 A;  1VQL 1;  2JA6 I;  3GTP I;  3OW2 Z;  1M1K 2;  1VQ8 1;  2H85 A;  1K73 2;  2LFU A;  1YJW 1;  3CCV Z;  3P5J B;  3I07 A;  1WW9 A;  1YIT 1;  1Z01 A;  3CC7 Z;  1VQO 1;  1YJW Z;  2LIY A;  1TWC I;  2JR6 A;  2R6M A;  2QA4 1;  1TWF I;  3JAM b;  2OOX B;  2AKL A;  3IFU A;  2R7Z I;  3CCQ 1;  1Q81 1;  3CCJ Z;  1TFI A;  1USP B;  4HGY A;  1YIJ 1;  3FQQ A;  3VMI A;  2JUB A;  1YJN 1;  3OW2 Y;  3G71 Z;  1USP A;  3CC2 1;  1Q82 2;  1SFO I;  3CCR 1;  2JIR A;  2GTH A;  1DL6 A;  1NUI A;  2RIQ A;  1KC8 2;  3CCR Z;  1FDO A;  5IP9 I;  2KI7 B;  2Q51 A;  3IR7 A;  3RZD I;  1VQ4 Z;  4AYB A;  1WII A;  1RO2 A;  1PFT A;  1VQN Z;  2QLV B;  1VQ9 1;  2O53 A;  1WZN A;  2VPY A;  2JIO A;  1NJI 2;  2E2J I;  1Q7Y 2;  2OTJ Z;  2R92 I;  3NFZ A;  2JIQ A;  4E30 A;  5FLX f;  1Z03 A;  1VQK 1;  2PM9 A;  1K8A 1;  4A3J I;  2JA5 I;  1M90 1;  2M48 A;  2JMO A;  3NDJ A;  3GKQ A;  2B63 I;  3VTN A;  3D6W A;  3KIF A;  4A3D I;  1R9T I;  1RO4 A;  1YUK A;  3IF8 A;  3GCF A;  3CD6 Z;  2V3V A;  3HOW I;  2AYD A;  3CC4 Z;  3JAM f;  1Q86 1;  3IX0 A;  4Y52 I;  3HOY I;  3GTG I;  3D2L A;  2JA7 I;  2JIP A;  2VUG A;  3CMA 1;  2YU9 I;  2VUM I;  3HOV I;  2IZ3 A;  2JS4 A;  5IT9 f;  3GTM S;  2V8K A;  2RPR A;  2E7Z A;  4NBA A;  5A2Q f;  3PO2 I;  5LL6 f;  5FLM I;  1ML8 A;  3U50 C;  3S14 I;  2NAP A;  4BY7 I;  3CCE Z;  1VQP 1;  3HOZ I;  2OTL 1;  2PK7 A;  5FLX b;  3BG1 B;  3G6E Z;  3S2H I;  3HOU I;  1K73 1;  1TWG I;  3J80 f;  3GTQ I;  4E2Z A;  1K9M 2;  1VQM Z;  2K3R A;  3CME 1;  1VQL Z;  5AN9 F;  2RBL A;  3H3V J;  2E9H A;  4NOZ A;  2WB1 A;  2KPI A;  1VQ8 Z;  4NBG A;  4E2X A;  3I4N I;  3TDH B;  2DE6 A;  1YIT Z;  3HKZ A;  3GTM I;  3S17 I;  2V8I A;  1VQO Z;  2J6A A;  2K5R A;  2QA4 Z;  1N8R 1;  2HU9 A;  1TWA I;  4MRI A;  1N2F A;  3ESW A;  4BXX I;  1Y8C A;  3CCQ Z;  3TE5 B;  3M3Y I;  3K7A I;  3MZL B;  1NP6 A;  3CQZ I;  1YIJ Z;  3CCS 1;  5IT9 b;  2QRE B;  5A2Q b;  1YJN Z;  1KD1 2;  3EER A;  3CC2 Z;  1FDI A;  5C4J I;  2DE5 A;  4E2W A;  2VPZ A;  1TWH I;  5CM2 M;  3PO3 S;  1NJI 1;  4A3E I;  1RQF A;  1AA6 A;  1Q81 2;  2WAQ A;  4TNU A;  2OZK A;  1Q7Y 1;  3J80 b;  5D1O A;  2G2K A;  5IP7 I;  4BY1 I;  4RVF A;  1ZB8 A;  3Q87 A;  2GU2 A;  1VQ9 Z;  1QF8 A;  2BJO A;  4NBD A;  1Y1V S;  3CPW Z;  3BG0 B;  3I55 1;  2NVT I;  1KQS Z;  2PMZ A;  3GTK I;  1QYP A;  1VQK Z;  4A3B I;  2QEX 1;  3F3F C;  2W03 A;  4A93 I;  2R93 I;  3G4S 1;  4E33 A;  2QEX Z;  4NBH A;  1VQ6 1;  3I56 1;  2JNY A;  1VQ5 1;  3VMG A;  3J7A 4;  2NVQ I;  2QKD A;  2QRD B;  3CCU 1;  1LQL A;  4MD9 A;  2ZAE B;  1YJ9 1;  3CCL 1;  4NB9 A;  4A3L I;  3CPW Y;  1ZB9 A;  1K83 I;  1RNI A;  1YJ9 Z;  2VPW A;  4MD7 A;  1K8A 2;  3CMA Z;  1S72 1;  1KQS Y;  1I3Q I;  2V8J A;  2JA8 I;  3MZK B;  3VMH A;  4MH4 A;  4NBE A;  1P9N A;  1S72 Z;  1X3W A;  1ZH1 A;  3NH8 A;  4A3F I;  4HH4 A;  1M1K 1;  1YI2 1;  2E2H I;  1Q86 2;  1VQP Z;  2IZ4 A;  1YHQ 1;  3CCM 1;  2F4O A;  1Y1W I;  2M6N A;  3S1N I;  2OTL Z;  4DGL A;  4Y7N I;  3GTJ I;  1YHQ Z;  1VQ7 1;  4A3G I;  2OOY B;  4A3C I;  4RS4 A;  2LEX A;  3S1R I;  2W04 A;  2Y0S A;  3CME Z;  4NH1 C;  2E2I I;  5C3E I;  3CXC Z;  1W2B Z;  1WCM I;  2I3C A;  2EGT A;  5C44 I;  1QVG Z;  3J81 b;  1S7M A;  4A3I I;  4MON A;  2VPX A;  2VF1 A;  3CCV 1;  1Q82 1;  1L1O C;  1KRL A;  3H0G I;  1WJ2 A;  1KD1 1;  3CC7 1;  2RHB A;  1QXF A;  1KC8 1;  4E2Y A;  2GTI A;  3MON A;  4S1T A;  5T6B A;  4NBC A;  1X3Z A;  3CCJ 1;  1QVF Z;  2P28 A;  3CCS Z;  1RO0 A;  3F3P C;  1YUA A;  3T4N B;  3S1Q I; 
#chains in the Genus database with same CATH homology
 2LEX A;  1WJ2 A;  2AYD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2AYDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations