2F1DA

X-ray structure of imidazoleglycerol-phosphate dehydratase
Total Genus 54
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
183
structure length
183
Chain Sequence
GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (19-22)S2 (22-29)3H1 (68-70)S1 (12-19)AH1 (43-56)S3 (36-39)TIV1 (29-32)AH4 (168-187)O1 (66-68)S4 (59-65)AH2 (72-91)AH3 (141-154)TII'1 (91-94)S5 (100-107)TII1 (94-97)S6 (110-118)TII'2 (107-110)S7 (123-127)S10 (156-164)S8 (134-135)S9 (138-139)TIV2 (134-137)Updating...
connected with : NaN
molecule tags Lyase
source organism Arabidopsis thaliana
publication title Structure and mechanism of imidazoleglycerol-phosphate dehydratase.
pubmed doi rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase 1
total genus 54
structure length 183
sequence length 183
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA02
4GQUA 4LPFA 4QNKA 1RHYA 4MU0A 4MU4A 2AE8A 4MU3A 5EL9A 4MU1A 4LOMA 5DNLA 5EKWA 5DNXA 5ELWA 2F1DA 4QNJA
chains in the Genus database with same CATH superfamily
4OX9I 3GLLA 4JI0I 3P3CA 4DPTA 4ZVIA 4DV2I 2E1RA 4DUYE 2IERA 1YHCA 1XNQI 1IBMI 4LF4I 2BM0A 3PYGA 4MQYA 2CG9A 5FWKA 4FW7A 2UXDE 4URLA 5EKWA 1H72C 4X64I 3HKMA 2BR2A 3PYFA 5JEAF 2WNRA 3P76A 3UHMA 4JI2I 4LCGA 3T1YI 4DPUA 3KRNA 4MDTA 4DUZI 4YHHI 5K36D 3M85G 1XMOE 4BA2B 5C0XF 2ZBKB 4FW5A 1U2RA 2HHHE 5FLXC 4LF7E 4DUYI 1Y5YA 2ZITA 4BA1A 4HYMA 4IFDB 4HACA 3U1YA 3U1KA 2VESA 2E5LE 2GQ0A 2UXDI 1Y4SA 3QT6A 5DROA 3QT5A 4PRVA 2O1WA 4DPYA 1PKPA 2Z5BA 4AIDA 3WU6A 5BR8E 4P7AA 4DV6E 4B3ME 2UUCE 5K36E 3ZZ0A 1PIEA 2HFSA 4IFDF 5DRRA 4MU0A 1XMOI 1A6FA 3M6AA 2HHHI 4K0KE 1NHJA 4LF7I 2R42A 4LPFA 1IBLE 2BA0G 1XNRE 4PRXA 4X62E 2NN6D 2E5LI 3GONA 4JYAE 4DU7A 3LPSA 2JEAB 4N3OA 4Z7CA 2UXBE 1FWLA 5EL9A 2V8PA 5BR8I 2NN6B 4DV6I 4B3MI 2UUCI 4B3RE 4OO1E 2DEJA 3V2UC 3PYEA 2HK3A 1FI4A 1VI7A 3B82A 1I94E 2Z5CA 5IWAE 4ISAA 3J80Q 4DXLA 5JEAC 4K0KI 1IBLI 4DPWA 2NN6E 1ELOA 4WUBA 5IT9C 1XNRI 1XHKA 4KHPE 1Z0TA 4X62I 1Z0GA 1J5EI 3P06A 2NN6F 2HKEA 2C37A 4B3SE 3NZKA 4USKA 2GO3A 3L7ZB 2VQFI 1HR0E 1N33E 4NBQA 2C38A 2UXBI 1Z59A 2O1VA 1RR9A 5JEAA 4B3RI 3WU3A 2AE8A 4JI3E 1I94I 4DR1I 2PO0A 3B8HA 5LL6R 5IWAI 1S16A 1XMQE 5C0XA 2JEBA 2PNZB 1IBKI 4ED4A 3P3GA 4KHPI 1E3PA 1Z0BA 4IFDC 4LF5E 2O1UA 3M7NG 3Q1QA 2HFUA 1H73A 1HR0I 4X66E 2WP8B 1N33I 3DD6A 1BKNA 4DV5E 4LFBI 5GMEA 4DV3E 2F4VE 4LF9E 2R3VA 4EMDA 3J7AG 1R6MA 2A2DA 4JI3I 2PO1B 1K47A 4IFDA 3M85D 1UEKA 2CVEA 4X65E 1WUUA 2X7IA 1XMQI 4DR5E 2PO2A 4LCHA 4LF5I 3H4LA 1OJ4A 1Y4UA 3F0NA 1ZM3A 1ZM2A 4MYTA 3J81C 4JI1E 1Z0EA 4X66I 5K36B 2JT2A 5A2QC 4KQVA 4DV5I 1MG7A 3PRYA 4DV3I 2F4VI 1N34E 2VF3A 4LF9I 2NN6C 3K85A 1UDNA 1DARA 3P3EA 5DNLA 1NHIA 1OYRA 1UDSA 2WNRB 1P42A 3PS1A 4LF8E 4X65I 4GQUA 4UTGA 4IS9A 4DR5I 4NXNE 4MU3A 4OO1D 5K36F 1H7SA 4B3TE 2BA0D 3T1HE 2BV3A 3QT7A 5L3JA 1HK7A 4JI1I 2JE6B 2NN6A 3J7AM 4OO1B 2PNMA 1N36E 4DV7E 4IZJD 2UUAE 4FW3A 4RPFA 1USUA 4QNJA 3K17A 2C39B 1N34I 3CDJA 1Z5BA 2BA1D 4DPXA 1D6TA 4FW4A 4DR7E 4JI8E 2OI2A 1R6LA 4IZJB 4M1KA 4JI6E 4JV5E 2Z5BB 5FLXQ 2HK2A 3J81Q 2V2QA 4LF8I 3QT8A 4NXNI 1HNZE 2CZ9A 4DR4E 4OO1F 4P52A 1ZM4A 1N0UA 4B3TI 3L7ZA 4U3DA 1FNMA 4DV1E 4AM3A 2GS8A 3CWVA 4UT4A 4LF6E 1B63A 1N36I 4DR3E 4DV7I 2UUAI 4JYAI 3Q6MA 1Z0CA 1PVGA 3ZM7A 3GMEA 4FN5A 1B62A 3CDIA 5LMUE 4DR7I 4JI8I 4DR2E 1S4EA 4IZKB 3OTOE 1Y60A 4JI6I 2V2VA 2HKJA 4LCFA 1FKAE 4JV5I 1H74A 2LJPA 3H1CA 1HNZI 4DR4I 1UDQA 2J7KA 4AIMA 2PNLA 3ZKDA 1Z5AA 2Z5CB 4DV1I 2X36A 4USMA 2UUBE 1XNQE 3M7ND 4DR3I 5K36C 3D4JA 4B3SI 3WU5A 4GKKE 1QZRA 2PO1A 3WU4A 2C37B 5LMUI 4DR2I 3B78A 3OTOI 2C38B 5DRPA 4BA2A 4DUZE 1H7UA 5DRQA 4WUCA 3PS2A 4LFAE 5IT9Q 4FWHA 5C0XD 2AJ4A 2IESA 1EI1A 5K36A 3JAMC 2PO0B 3ZZTA 4FW9A 2UUBI 1RREA 2V34A 3K1JA 5GMDA 5C0XB 2JEBB 4I3HA 4OO1C 5JEAE 1N32E 4GKKI 4DV4E 4DV0E 3B4TA 1Z0WA 2XEXA 2A2CA 5DNXA 4JI5E 3PS3A 4LOMA 1VISA 5C0XE 4FWGA 4IFDD 4J3DA 4LFAI 4DU8A 2BR2B 2JE6A 4OO1A 2VQEE 4PU9A 2JEAA 4AQYE 1HNWE 2C39A 3J80C 2PO2B 2Z5EA 1N32I 1ZXNA 4DV4I 4DV0I 4OZEA 4IZJA 5ELWA 1OYSA 2IOPA 4Z7YA 1ZXMA 2J65A 4JI5I 4BA1B 4HACB 1NZ0A 4IFDE 4U3BA 4HY1A 1N0VC 2UU9E 3JAMQ 2ZM6E 3LTOA 1NHHA 2O1TA 1MX0A 4MU4A 4MU1A 2O3ZA 4HXZA 1KVKA 2VQEI 4AQYI 1HNWI 4LFCE 3T1HI 5A2QQ 3GCMA 2GO4A 1J5EE 4NXME 2WW4A 2DEIA 2VQFE 4IZKA 2F1DA 1Z0VA 3Q6NA 5LMNE 1Z5CA 4FWDA 1KKHA 1YH8A 2BA1G 4JI4E 1HNXE 1E3HA 2UU9I 2UXCE 4R1FA 2BM1A 2ZM6I 4DR6E 4YY3E 1OYPA 4JI7E 4DR1E 3ZKBA 2PNZA 2NPFA 3PYDA 3HULA 2EFGA 3V5RA 1FJGE 4GKJE 1KTVA 1IBKE 4JG4A 4OX9E 4JI0E 4LFCI 1EA6A 4OKGA 1XXEA 2WP8A 4DV2E 4NXMI 2CGEA 5C0XC 3LNUA 2V2ZA 4LF6I 1KIJA 4MYUA 1IBME 5LMNI 4LF4E 2IOQA 4FW6A 4QNKA 3HJCA 4JI4I 1HNXI 4LFBE 1ZM9A 4X64E 2UXCI 1USVA 1FWKA 4DR6I 1UDOA 4YY3I 5JEAD 1Y6ZA 1RHYA 2Q2EB 1MU5A 4JI7I 4JI2E 3T1YE 3ZZUA 4YHHE 4GKJI 1FJGI 4XTJA 5JEAB 4WUDA
chains in the Genus database with same CATH topology
4GQUA 4LPFA 4QNKA 1RHYA 4MU0A 4MU4A 2AE8A 4MU3A 5EL9A 4MU1A 4LOMA 5DNLA 5EKWA 5DNXA 5ELWA 2F1DA 4QNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  4LPF A;  4QNK A;  1RHY A;  4MU0 A;  4MU4 A;  2AE8 A;  4MU3 A;  5EL9 A;  4MU1 A;  4LOM A;  5DNL A;  5EKW A;  5DNX A;  5ELW A;  2F1D A;  4QNJ A; 
#chains in the Genus database with same CATH topology
 4OX9 I;  3GLL A;  4JI0 I;  3P3C A;  4DPT A;  4ZVI A;  4DV2 I;  2E1R A;  4DUY E;  2IER A;  1YHC A;  1XNQ I;  1IBM I;  4LF4 I;  2BM0 A;  3PYG A;  4MQY A;  2CG9 A;  5FWK A;  4FW7 A;  2UXD E;  4URL A;  5EKW A;  1H72 C;  4X64 I;  3HKM A;  2BR2 A;  3PYF A;  5JEA F;  2WNR A;  3P76 A;  3UHM A;  4JI2 I;  4LCG A;  3T1Y I;  4DPU A;  3KRN A;  4MDT A;  4DUZ I;  4YHH I;  5K36 D;  3M85 G;  1XMO E;  4BA2 B;  5C0X F;  2ZBK B;  4FW5 A;  1U2R A;  2HHH E;  5FLX C;  4LF7 E;  4DUY I;  1Y5Y A;  2ZIT A;  4BA1 A;  4HYM A;  4IFD B;  4HAC A;  3U1Y A;  3U1K A;  2VES A;  2E5L E;  2GQ0 A;  2UXD I;  1Y4S A;  3QT6 A;  5DRO A;  3QT5 A;  4PRV A;  2O1W A;  4DPY A;  1PKP A;  2Z5B A;  4AID A;  3WU6 A;  5BR8 E;  4P7A A;  4DV6 E;  4B3M E;  2UUC E;  5K36 E;  3ZZ0 A;  1PIE A;  2HFS A;  4IFD F;  5DRR A;  4MU0 A;  1XMO I;  1A6F A;  3M6A A;  2HHH I;  4K0K E;  1NHJ A;  4LF7 I;  2R42 A;  4LPF A;  1IBL E;  2BA0 G;  1XNR E;  4PRX A;  4X62 E;  2NN6 D;  2E5L I;  3GON A;  4JYA E;  4DU7 A;  3LPS A;  2JEA B;  4N3O A;  4Z7C A;  2UXB E;  1FWL A;  5EL9 A;  2V8P A;  5BR8 I;  2NN6 B;  4DV6 I;  4B3M I;  2UUC I;  4B3R E;  4OO1 E;  2DEJ A;  3V2U C;  3PYE A;  2HK3 A;  1FI4 A;  1VI7 A;  3B82 A;  1I94 E;  2Z5C A;  5IWA E;  4ISA A;  3J80 Q;  4DXL A;  5JEA C;  4K0K I;  1IBL I;  4DPW A;  2NN6 E;  1ELO A;  4WUB A;  5IT9 C;  1XNR I;  1XHK A;  4KHP E;  1Z0T A;  4X62 I;  1Z0G A;  1J5E I;  3P06 A;  2NN6 F;  2HKE A;  2C37 A;  4B3S E;  3NZK A;  4USK A;  2GO3 A;  3L7Z B;  2VQF I;  1HR0 E;  1N33 E;  4NBQ A;  2C38 A;  2UXB I;  1Z59 A;  2O1V A;  1RR9 A;  5JEA A;  4B3R I;  3WU3 A;  2AE8 A;  4JI3 E;  1I94 I;  4DR1 I;  2PO0 A;  3B8H A;  5LL6 R;  5IWA I;  1S16 A;  1XMQ E;  5C0X A;  2JEB A;  2PNZ B;  1IBK I;  4ED4 A;  3P3G A;  4KHP I;  1E3P A;  1Z0B A;  4IFD C;  4LF5 E;  2O1U A;  3M7N G;  3Q1Q A;  2HFU A;  1H73 A;  1HR0 I;  4X66 E;  2WP8 B;  1N33 I;  3DD6 A;  1BKN A;  4DV5 E;  4LFB I;  5GME A;  4DV3 E;  2F4V E;  4LF9 E;  2R3V A;  4EMD A;  3J7A G;  1R6M A;  2A2D A;  4JI3 I;  2PO1 B;  1K47 A;  4IFD A;  3M85 D;  1UEK A;  2CVE A;  4X65 E;  1WUU A;  2X7I A;  1XMQ I;  4DR5 E;  2PO2 A;  4LCH A;  4LF5 I;  3H4L A;  1OJ4 A;  1Y4U A;  3F0N A;  1ZM3 A;  1ZM2 A;  4MYT A;  3J81 C;  4JI1 E;  1Z0E A;  4X66 I;  5K36 B;  2JT2 A;  5A2Q C;  4KQV A;  4DV5 I;  1MG7 A;  3PRY A;  4DV3 I;  2F4V I;  1N34 E;  2VF3 A;  4LF9 I;  2NN6 C;  3K85 A;  1UDN A;  1DAR A;  3P3E A;  5DNL A;  1NHI A;  1OYR A;  1UDS A;  2WNR B;  1P42 A;  3PS1 A;  4LF8 E;  4X65 I;  4GQU A;  4UTG A;  4IS9 A;  4DR5 I;  4NXN E;  4MU3 A;  4OO1 D;  5K36 F;  1H7S A;  4B3T E;  2BA0 D;  3T1H E;  2BV3 A;  3QT7 A;  5L3J A;  1HK7 A;  4JI1 I;  2JE6 B;  2NN6 A;  3J7A M;  4OO1 B;  2PNM A;  1N36 E;  4DV7 E;  4IZJ D;  2UUA E;  4FW3 A;  4RPF A;  1USU A;  4QNJ A;  3K17 A;  2C39 B;  1N34 I;  3CDJ A;  1Z5B A;  2BA1 D;  4DPX A;  1D6T A;  4FW4 A;  4DR7 E;  4JI8 E;  2OI2 A;  1R6L A;  4IZJ B;  4M1K A;  4JI6 E;  4JV5 E;  2Z5B B;  5FLX Q;  2HK2 A;  3J81 Q;  2V2Q A;  4LF8 I;  3QT8 A;  4NXN I;  1HNZ E;  2CZ9 A;  4DR4 E;  4OO1 F;  4P52 A;  1ZM4 A;  1N0U A;  4B3T I;  3L7Z A;  4U3D A;  1FNM A;  4DV1 E;  4AM3 A;  2GS8 A;  3CWV A;  4UT4 A;  4LF6 E;  1B63 A;  1N36 I;  4DR3 E;  4DV7 I;  2UUA I;  4JYA I;  3Q6M A;  1Z0C A;  1PVG A;  3ZM7 A;  3GME A;  4FN5 A;  1B62 A;  3CDI A;  5LMU E;  4DR7 I;  4JI8 I;  4DR2 E;  1S4E A;  4IZK B;  3OTO E;  1Y60 A;  4JI6 I;  2V2V A;  2HKJ A;  4LCF A;  1FKA E;  4JV5 I;  1H74 A;  2LJP A;  3H1C A;  1HNZ I;  4DR4 I;  1UDQ A;  2J7K A;  4AIM A;  2PNL A;  3ZKD A;  1Z5A A;  2Z5C B;  4DV1 I;  2X36 A;  4USM A;  2UUB E;  1XNQ E;  3M7N D;  4DR3 I;  5K36 C;  3D4J A;  4B3S I;  3WU5 A;  4GKK E;  1QZR A;  2PO1 A;  3WU4 A;  2C37 B;  5LMU I;  4DR2 I;  3B78 A;  3OTO I;  2C38 B;  5DRP A;  4BA2 A;  4DUZ E;  1H7U A;  5DRQ A;  4WUC A;  3PS2 A;  4LFA E;  5IT9 Q;  4FWH A;  5C0X D;  2AJ4 A;  2IES A;  1EI1 A;  5K36 A;  3JAM C;  2PO0 B;  3ZZT A;  4FW9 A;  2UUB I;  1RRE A;  2V34 A;  3K1J A;  5GMD A;  5C0X B;  2JEB B;  4I3H A;  4OO1 C;  5JEA E;  1N32 E;  4GKK I;  4DV4 E;  4DV0 E;  3B4T A;  1Z0W A;  2XEX A;  2A2C A;  5DNX A;  4JI5 E;  3PS3 A;  4LOM A;  1VIS A;  5C0X E;  4FWG A;  4IFD D;  4J3D A;  4LFA I;  4DU8 A;  2BR2 B;  2JE6 A;  4OO1 A;  2VQE E;  4PU9 A;  2JEA A;  4AQY E;  1HNW E;  2C39 A;  3J80 C;  2PO2 B;  2Z5E A;  1N32 I;  1ZXN A;  4DV4 I;  4DV0 I;  4OZE A;  4IZJ A;  5ELW A;  1OYS A;  2IOP A;  4Z7Y A;  1ZXM A;  2J65 A;  4JI5 I;  4BA1 B;  4HAC B;  1NZ0 A;  4IFD E;  4U3B A;  4HY1 A;  1N0V C;  2UU9 E;  3JAM Q;  2ZM6 E;  3LTO A;  1NHH A;  2O1T A;  1MX0 A;  4MU4 A;  4MU1 A;  2O3Z A;  4HXZ A;  1KVK A;  2VQE I;  4AQY I;  1HNW I;  4LFC E;  3T1H I;  5A2Q Q;  3GCM A;  2GO4 A;  1J5E E;  4NXM E;  2WW4 A;  2DEI A;  2VQF E;  4IZK A;  2F1D A;  1Z0V A;  3Q6N A;  5LMN E;  1Z5C A;  4FWD A;  1KKH A;  1YH8 A;  2BA1 G;  4JI4 E;  1HNX E;  1E3H A;  2UU9 I;  2UXC E;  4R1F A;  2BM1 A;  2ZM6 I;  4DR6 E;  4YY3 E;  1OYP A;  4JI7 E;  4DR1 E;  3ZKB A;  2PNZ A;  2NPF A;  3PYD A;  3HUL A;  2EFG A;  3V5R A;  1FJG E;  4GKJ E;  1KTV A;  1IBK E;  4JG4 A;  4OX9 E;  4JI0 E;  4LFC I;  1EA6 A;  4OKG A;  1XXE A;  2WP8 A;  4DV2 E;  4NXM I;  2CGE A;  5C0X C;  3LNU A;  2V2Z A;  4LF6 I;  1KIJ A;  4MYU A;  1IBM E;  5LMN I;  4LF4 E;  2IOQ A;  4FW6 A;  4QNK A;  3HJC A;  4JI4 I;  1HNX I;  4LFB E;  1ZM9 A;  4X64 E;  2UXC I;  1USV A;  1FWK A;  4DR6 I;  1UDO A;  4YY3 I;  5JEA D;  1Y6Z A;  1RHY A;  2Q2E B;  1MU5 A;  4JI7 I;  4JI2 E;  3T1Y E;  3ZZU A;  4YHH E;  4GKJ I;  1FJG I;  4XTJ A;  5JEA B;  4WUD A; 
#chains in the Genus database with same CATH homology
 4GQU A;  4LPF A;  4QNK A;  1RHY A;  4MU0 A;  4MU4 A;  2AE8 A;  4MU3 A;  5EL9 A;  4MU1 A;  4LOM A;  5DNL A;  5EKW A;  5DNX A;  5ELW A;  2F1D A;  4QNJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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