2J65 | Genus

Total Genus 92

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	267
structure length	267
Chain Sequence	GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Aquifex aeolicus
publication title	The Nucleotide-Binding Site of Aquifex Aeolicus Lpxc. pubmed doi rcsb
molecule keywords	UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
total genus	92
structure length	267
sequence length	267
chains with identical sequence	B
ec nomenclature	ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date	2006-09-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03331	LpxC	UDP-3-O-acyl N-acetylglycosamine deacetylase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.230.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	lpxc deacetylase, domain 1	2j65A01
3.30.1700.10	Alpha Beta	2-Layer Sandwich	lpxc deacetylase, domain 1	lpxc deacetylase, domain 2	2j65A02

4OKGA 2O3ZA 4LCHA 5DROA 4LCGA 3UHMA 4FW4A 4FW3A 4J3DA 3NZKA 4MDTA 2IESA 4OZEA 4U3BA 3P3GA 4U3DA 4IS9A 5DRPA 3U1YA 4FW7A 1YH8A 2GO3A 1XXEA 1YHCA 3P76A 4ISAA 4FW6A 2IERA 3PS1A 4LCFA 4MQYA 2VESA 2GO4A 2J65A 1P42A 5DRRA 3P3EA 2JT2A 3P3CA 3PS3A 3PS2A 4FW5A 5DRQA
chains in the Genus database with same CATH superfamily

4BA1B 2C39A 2JEAA 1EA6A 5DROA 2BA1G 3GONA 4IFDB 2PNLA 1HR0E 4FW9A 3ZKDA 4JI7E 4DPWA 2ZM6E 4DR3E 5C0XF 2UUAI 3M7ND 4P7AA 1YHCA 4PRVA 3V2UC 1I94I 1PIEA 1R6LA 2DEIA 4JI8E 2O1WA 4B3SI 4DPUA 4LFBE 5C0XC 4DV2I 3PRYA 4JI1E 2C38B 4DR4I 2JE6B 4FWDA 4WUDA 4I3HA 2OI2A 4FWGA 5K36B 5LMUI 1VISA 4DPTA 2UUCI 4DV3E 4DUZI 1RR9A 4U3BA 1N34I 4IZJB 4DUYE 1Z5CA 2F4VI 5IWAI 4OO1B 1ZM9A 4DV4E 2GO4A 4JI5E 3WU5A 3ZKBA 4P52A 4IFDD 2Z5EA 1HNXE 1IBMI 4B3RE 2ZITA 1IBLI 3J7AG 2UU9E 4JI3E 2BM0A 1Z5AA 5LMNE 2BA0D 1Z0BA 4IZKA 2ZM6I 3HKMA 4FN5A 1J5EE 5ELWA 2VQEE 4IS9A 3QT6A 3QT5A 4UT4A 2NN6B 1OJ4A 1N0VC 4JI8I 2J7KA 2LJPA 4AQYI 3CDJA 5K36D 1ZM4A 2Z5BA 4HACB 2PO1A 4IFDC 1Y4UA 4QNKA 2BR2B 4WUBA 2A2DA 4IZJD 3LTOA 4LF9E 2ZBKB 4NBQA 3UHMA 4OO1D 2VF3A 4DV3I 2C39B 2O1UA 2JEAB 2R3VA 4DUYI 1XMQE 4DV5E 1YH8A 3QT8A 4JI4E 2XEXA 1KTVA 1HK7A 4MU3A 1NHJA 1FWLA 4JI5I 3LNUA 3WU6A 4Z7YA 2PO2A 1HNXI 1UDOA 4B3RI 4OO1F 1XNRE 1N33E 3ZZ0A 3J81C 4GQUA 2UU9I 4JI3I 1FI4A 1H72C 3ZZUA 3T1HE 2NN6D 3L7ZA 1J5EI 4OO1C 2HKEA 4DR7E 4LFCE 1XMOE 2CGEA 2CVEA 3PS1A 1H73A 1P42A 4Z7CA 4YY3E 3P3EA 2A2CA 1NHIA 2NN6F 3P3CA 1NHHA 3GMEA 2VQFI 5DNLA 5JEAE 3PYGA 2PNZA 1Y4SA 4LF9I 4B3TI 2V2QA 2NN6C 4MYUA 1FJGI 2HK3A 4U3DA 3WU3A 1XMQI 2CZ9A 3LPSA 4DV5I 1U2RA 4ISAA 5BR8E 2UXCI 2HFUA 2V34A 4IZKB 4FW6A 4HY1A 2HHHE 1KKHA 2C37A 1XNRI 4AM3A 1N33I 3PS2A 4DV7E 3PYFA 2Z5BB 3J81Q 4NXNI 3T1HI 2PO1B 2PO0A 4J3DA 5L3JA 1Z0VA 1OYSA 4YHHI 4HYMA 4OZEA 4LFCI 4JI2E 4X66I 4FW7A 4GKKE 5EL9A 3M85D 4JYAE 4YY3I 2EFGA 4USKA 1UEKA 3GLLA 1Y6ZA 2Z5CA 5FLXQ 2PO2B 1N32E 4JI6E 1RREA 5FWKA 1HR0I 1UDSA 4DR3I 4JI7I 4DXLA 4X65E 2AE8A 5DRPA 3Q6MA 4LFAE 3L7ZB 4DR5E 2GS8A 4JG4A 2HHHI 1UDNA 1XNQE 4DV6E 4DPXA 2WNRA 5JEAA 2BA1D 4LFBI 4JI1I 4X62E 4DV7I 1MG7A 1WUUA 1H74A 1Z5BA 5C0XE 1N36E 1H7UA 3F0NA 4LF6E 5JEAF 4B3ME 4M1KA 1EI1A 4DR6E 2BV3A 5EKWA 1B62A 1HNZE 4LF5E 4JI2I 1VI7A 1OYPA 2PNZB 4PRXA 4GKKI 4X64E 1K47A 4DU7A 4DV4I 2R42A 5JEAC 2V8PA 5GMEA 3ZZTA 5K36A 4DV1E 2UUBE 4MYTA 2IOQA 2WP8A 2F1DA 3J80C 2UXDE 1FKAE 1ZXNA 4LF4E 1N32I 4ZVIA 5LMNI 2C37B 1ZXMA 4JI6I 1ELOA 4FWHA 1MX0A 3NZKA 1HNWE 2VQEI 4BA2A 2PO0B 4DR5I 2IERA 2O1VA 4HXZA 1FNMA 4DV6I 2Q2EB 1IBKE 3KRNA 1NZ0A 4DR4E 1UDQA 2BM1A 4X62I 5FLXC 4UTGA 4LCHA 4RPFA 5A2QQ 1ZM3A 2X7IA 1N36I 3CWVA 4LCGA 2GQ0A 4DV0E 3PYDA 4FW4A 1KIJA 2JEBA 3M6AA 2UUCE 1HNZI 4IFDE 2DEJA 2HKJA 2Z5CB 3ZM7A 4DUZE 4LF5I 3U1YA 3PYEA 4JI4I 4X64I 4HACA 2VESA 4MU0A 2NPFA 2PNMA 2V2ZA 5C0XA 3K17A 1Z0EA 4URLA 1Y5YA 2UUBI 3T1YE 1IBME 1Z0CA 2UXDI 5JEAB 2WNRB 4NXME 3K1JA 1IBLE 4JI0E 1B63A 4LF4I 3J80Q 3H1CA 5K36E 5IT9Q 1HNWI 2IESA 1ZM2A 4DR7I 3P3GA 3B4TA 4WUCA 1XMOI 3GCMA 1R6MA 4OO1E 4AQYE 1IBKI 1QZRA 4OX9E 4DR2E 4LF8E 3PS3A 4AIMA 4XTJA 1OYRA 1Z0WA 4DV0I 4USMA 2WP8B 1Y60A 4MDTA 4MU4A 3P06A 4GKJE 2GO3A 1XXEA 3U1KA 3JAMQ 5BR8I 4LCFA 4MQYA 5JEAD 2NN6E 4KHPE 4LF7E 5LL6R 1BKNA 4BA2B 4BA1A 4K0KE 1D6TA 3T1YI 4JV5E 1H7SA 4LOMA 4IFDA 3Q1QA 5DRRA 3HJCA 5A2QC 4NXMI 3J7AM 4JI0I 2O3ZA 2E1RA 3OTOE 1A6FA 4DR1E 4ED4A 1FWKA 1E3PA 2E5LE 4IFDF 3H4LA 2JEBB 4PU9A 2C38A 2WW4A 2JE6A 4JYAI 4OX9I 3M7NG 4DR2I 2UXBE 4LF8I 1PKPA 1USVA 5C0XB 4OKGA 3QT7A 2VQFE 1RHYA 1Z0TA 4IZJA 4B3TE 4MU1A 4FW3A 1KVKA 3D4JA 5GMDA 5IT9C 4OO1A 1FJGE 5K36F 5DNXA 2UUAE 1PVGA 4X65I 4GKJI 2HFSA 4LFAI 2UXCE 4KQVA 2O1TA 3V5RA 3B8HA 2X36A 4KHPI 1I94E 4LF7I 1XNQI 4B3SE 4K0KI 1Z0GA 4DV2E 5K36C 4JV5I 2AJ4A 1N0UA 3Q6NA 4DPYA 3M85G 1USUA 4AIDA 2IOPA 4DU8A 3OTOI 4DR1I 4NXNE 3HULA 1MU5A 2HK2A 5LMUE 4LF6I 2NN6A 4B3MI 2CG9A 4YHHE 3WU4A 4DR6I 3B78A 3DD6A 4N3OA 2E5LI 4EMDA 4X66E 1N34E 3JAMC 3P76A 1DARA 2F4VE 4LPFA 5IWAE 2BA0G 2J65A 5C0XD 1E3HA 4R1FA 1Z59A 2BR2A 1XHKA 3B82A 2UXBI 3CDIA 2JT2A 3K85A 1S4EA 4DV1I 1S16A 4QNJA 4FW5A 5DRQA 2V2VA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4OKG A;  2O3Z A;  4LCH A;  5DRO A;  4LCG A;  3UHM A;  4FW4 A;  4FW3 A;  4J3D A;  3NZK A;  4MDT A;  2IES A;  4OZE A;  4U3B A;  3P3G A;  4U3D A;  4IS9 A;  5DRP A;  3U1Y A;  4FW7 A;  1YH8 A;  2GO3 A;  1XXE A;  1YHC A;  3P76 A;  4ISA A;  4FW6 A;  2IER A;  3PS1 A;  4LCF A;  4MQY A;  2VES A;  2GO4 A;  2J65 A;  1P42 A;  5DRR A;  3P3E A;  2JT2 A;  3P3C A;  3PS3 A;  3PS2 A;  4FW5 A;  5DRQ A; 
#chains in the Genus database with same CATH topology
 4BA1 B;  2C39 A;  2JEA A;  1EA6 A;  5DRO A;  2BA1 G;  3GON A;  4IFD B;  2PNL A;  1HR0 E;  4FW9 A;  3ZKD A;  4JI7 E;  4DPW A;  2ZM6 E;  4DR3 E;  5C0X F;  2UUA I;  3M7N D;  4P7A A;  1YHC A;  4PRV A;  3V2U C;  1I94 I;  1PIE A;  1R6L A;  2DEI A;  4JI8 E;  2O1W A;  4B3S I;  4DPU A;  4LFB E;  5C0X C;  4DV2 I;  3PRY A;  4JI1 E;  2C38 B;  4DR4 I;  2JE6 B;  4FWD A;  4WUD A;  4I3H A;  2OI2 A;  4FWG A;  5K36 B;  5LMU I;  1VIS A;  4DPT A;  2UUC I;  4DV3 E;  4DUZ I;  1RR9 A;  4U3B A;  1N34 I;  4IZJ B;  4DUY E;  1Z5C A;  2F4V I;  5IWA I;  4OO1 B;  1ZM9 A;  4DV4 E;  2GO4 A;  4JI5 E;  3WU5 A;  3ZKB A;  4P52 A;  4IFD D;  2Z5E A;  1HNX E;  1IBM I;  4B3R E;  2ZIT A;  1IBL I;  3J7A G;  2UU9 E;  4JI3 E;  2BM0 A;  1Z5A A;  5LMN E;  2BA0 D;  1Z0B A;  4IZK A;  2ZM6 I;  3HKM A;  4FN5 A;  1J5E E;  5ELW A;  2VQE E;  4IS9 A;  3QT6 A;  3QT5 A;  4UT4 A;  2NN6 B;  1OJ4 A;  1N0V C;  4JI8 I;  2J7K A;  2LJP A;  4AQY I;  3CDJ A;  5K36 D;  1ZM4 A;  2Z5B A;  4HAC B;  2PO1 A;  4IFD C;  1Y4U A;  4QNK A;  2BR2 B;  4WUB A;  2A2D A;  4IZJ D;  3LTO A;  4LF9 E;  2ZBK B;  4NBQ A;  3UHM A;  4OO1 D;  2VF3 A;  4DV3 I;  2C39 B;  2O1U A;  2JEA B;  2R3V A;  4DUY I;  1XMQ E;  4DV5 E;  1YH8 A;  3QT8 A;  4JI4 E;  2XEX A;  1KTV A;  1HK7 A;  4MU3 A;  1NHJ A;  1FWL A;  4JI5 I;  3LNU A;  3WU6 A;  4Z7Y A;  2PO2 A;  1HNX I;  1UDO A;  4B3R I;  4OO1 F;  1XNR E;  1N33 E;  3ZZ0 A;  3J81 C;  4GQU A;  2UU9 I;  4JI3 I;  1FI4 A;  1H72 C;  3ZZU A;  3T1H E;  2NN6 D;  3L7Z A;  1J5E I;  4OO1 C;  2HKE A;  4DR7 E;  4LFC E;  1XMO E;  2CGE A;  2CVE A;  3PS1 A;  1H73 A;  1P42 A;  4Z7C A;  4YY3 E;  3P3E A;  2A2C A;  1NHI A;  2NN6 F;  3P3C A;  1NHH A;  3GME A;  2VQF I;  5DNL A;  5JEA E;  3PYG A;  2PNZ A;  1Y4S A;  4LF9 I;  4B3T I;  2V2Q A;  2NN6 C;  4MYU A;  1FJG I;  2HK3 A;  4U3D A;  3WU3 A;  1XMQ I;  2CZ9 A;  3LPS A;  4DV5 I;  1U2R A;  4ISA A;  5BR8 E;  2UXC I;  2HFU A;  2V34 A;  4IZK B;  4FW6 A;  4HY1 A;  2HHH E;  1KKH A;  2C37 A;  1XNR I;  4AM3 A;  1N33 I;  3PS2 A;  4DV7 E;  3PYF A;  2Z5B B;  3J81 Q;  4NXN I;  3T1H I;  2PO1 B;  2PO0 A;  4J3D A;  5L3J A;  1Z0V A;  1OYS A;  4YHH I;  4HYM A;  4OZE A;  4LFC I;  4JI2 E;  4X66 I;  4FW7 A;  4GKK E;  5EL9 A;  3M85 D;  4JYA E;  4YY3 I;  2EFG A;  4USK A;  1UEK A;  3GLL A;  1Y6Z A;  2Z5C A;  5FLX Q;  2PO2 B;  1N32 E;  4JI6 E;  1RRE A;  5FWK A;  1HR0 I;  1UDS A;  4DR3 I;  4JI7 I;  4DXL A;  4X65 E;  2AE8 A;  5DRP A;  3Q6M A;  4LFA E;  3L7Z B;  4DR5 E;  2GS8 A;  4JG4 A;  2HHH I;  1UDN A;  1XNQ E;  4DV6 E;  4DPX A;  2WNR A;  5JEA A;  2BA1 D;  4LFB I;  4JI1 I;  4X62 E;  4DV7 I;  1MG7 A;  1WUU A;  1H74 A;  1Z5B A;  5C0X E;  1N36 E;  1H7U A;  3F0N A;  4LF6 E;  5JEA F;  4B3M E;  4M1K A;  1EI1 A;  4DR6 E;  2BV3 A;  5EKW A;  1B62 A;  1HNZ E;  4LF5 E;  4JI2 I;  1VI7 A;  1OYP A;  2PNZ B;  4PRX A;  4GKK I;  4X64 E;  1K47 A;  4DU7 A;  4DV4 I;  2R42 A;  5JEA C;  2V8P A;  5GME A;  3ZZT A;  5K36 A;  4DV1 E;  2UUB E;  4MYT A;  2IOQ A;  2WP8 A;  2F1D A;  3J80 C;  2UXD E;  1FKA E;  1ZXN A;  4LF4 E;  1N32 I;  4ZVI A;  5LMN I;  2C37 B;  1ZXM A;  4JI6 I;  1ELO A;  4FWH A;  1MX0 A;  3NZK A;  1HNW E;  2VQE I;  4BA2 A;  2PO0 B;  4DR5 I;  2IER A;  2O1V A;  4HXZ A;  1FNM A;  4DV6 I;  2Q2E B;  1IBK E;  3KRN A;  1NZ0 A;  4DR4 E;  1UDQ A;  2BM1 A;  4X62 I;  5FLX C;  4UTG A;  4LCH A;  4RPF A;  5A2Q Q;  1ZM3 A;  2X7I A;  1N36 I;  3CWV A;  4LCG A;  2GQ0 A;  4DV0 E;  3PYD A;  4FW4 A;  1KIJ A;  2JEB A;  3M6A A;  2UUC E;  1HNZ I;  4IFD E;  2DEJ A;  2HKJ A;  2Z5C B;  3ZM7 A;  4DUZ E;  4LF5 I;  3U1Y A;  3PYE A;  4JI4 I;  4X64 I;  4HAC A;  2VES A;  4MU0 A;  2NPF A;  2PNM A;  2V2Z A;  5C0X A;  3K17 A;  1Z0E A;  4URL A;  1Y5Y A;  2UUB I;  3T1Y E;  1IBM E;  1Z0C A;  2UXD I;  5JEA B;  2WNR B;  4NXM E;  3K1J A;  1IBL E;  4JI0 E;  1B63 A;  4LF4 I;  3J80 Q;  3H1C A;  5K36 E;  5IT9 Q;  1HNW I;  2IES A;  1ZM2 A;  4DR7 I;  3P3G A;  3B4T A;  4WUC A;  1XMO I;  3GCM A;  1R6M A;  4OO1 E;  4AQY E;  1IBK I;  1QZR A;  4OX9 E;  4DR2 E;  4LF8 E;  3PS3 A;  4AIM A;  4XTJ A;  1OYR A;  1Z0W A;  4DV0 I;  4USM A;  2WP8 B;  1Y60 A;  4MDT A;  4MU4 A;  3P06 A;  4GKJ E;  2GO3 A;  1XXE A;  3U1K A;  3JAM Q;  5BR8 I;  4LCF A;  4MQY A;  5JEA D;  2NN6 E;  4KHP E;  4LF7 E;  5LL6 R;  1BKN A;  4BA2 B;  4BA1 A;  4K0K E;  1D6T A;  3T1Y I;  4JV5 E;  1H7S A;  4LOM A;  4IFD A;  3Q1Q A;  5DRR A;  3HJC A;  5A2Q C;  4NXM I;  3J7A M;  4JI0 I;  2O3Z A;  2E1R A;  3OTO E;  1A6F A;  4DR1 E;  4ED4 A;  1FWK A;  1E3P A;  2E5L E;  4IFD F;  3H4L A;  2JEB B;  4PU9 A;  2C38 A;  2WW4 A;  2JE6 A;  4JYA I;  4OX9 I;  3M7N G;  4DR2 I;  2UXB E;  4LF8 I;  1PKP A;  1USV A;  5C0X B;  4OKG A;  3QT7 A;  2VQF E;  1RHY A;  1Z0T A;  4IZJ A;  4B3T E;  4MU1 A;  4FW3 A;  1KVK A;  3D4J A;  5GMD A;  5IT9 C;  4OO1 A;  1FJG E;  5K36 F;  5DNX A;  2UUA E;  1PVG A;  4X65 I;  4GKJ I;  2HFS A;  4LFA I;  2UXC E;  4KQV A;  2O1T A;  3V5R A;  3B8H A;  2X36 A;  4KHP I;  1I94 E;  4LF7 I;  1XNQ I;  4B3S E;  4K0K I;  1Z0G A;  4DV2 E;  5K36 C;  4JV5 I;  2AJ4 A;  1N0U A;  3Q6N A;  4DPY A;  3M85 G;  1USU A;  4AID A;  2IOP A;  4DU8 A;  3OTO I;  4DR1 I;  4NXN E;  3HUL A;  1MU5 A;  2HK2 A;  5LMU E;  4LF6 I;  2NN6 A;  4B3M I;  2CG9 A;  4YHH E;  3WU4 A;  4DR6 I;  3B78 A;  3DD6 A;  4N3O A;  2E5L I;  4EMD A;  4X66 E;  1N34 E;  3JAM C;  3P76 A;  1DAR A;  2F4V E;  4LPF A;  5IWA E;  2BA0 G;  2J65 A;  5C0X D;  1E3H A;  4R1F A;  1Z59 A;  2BR2 A;  1XHK A;  3B82 A;  2UXB I;  3CDI A;  2JT2 A;  3K85 A;  1S4E A;  4DV1 I;  1S16 A;  4QNJ A;  4FW5 A;  5DRQ A;  2V2V A; 
#chains in the Genus database with same CATH homology
 4OKG A;  2O3Z A;  4LCH A;  5DRO A;  4LCG A;  3UHM A;  4FW4 A;  4FW3 A;  4J3D A;  3NZK A;  4MDT A;  2IES A;  4OZE A;  4U3B A;  3P3G A;  4U3D A;  4IS9 A;  5DRP A;  3U1Y A;  4FW7 A;  1YH8 A;  2GO3 A;  1XXE A;  1YHC A;  3P76 A;  4ISA A;  4FW6 A;  2IER A;  3PS1 A;  4LCF A;  4MQY A;  2VES A;  2GO4 A;  2J65 A;  1P42 A;  5DRR A;  3P3E A;  2JT2 A;  3P3C A;  3PS3 A;  3PS2 A;  4FW5 A;  5DRQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2J65A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations