The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
186
|
structure length |
176
|
Chain Sequence |
VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structures of catalytic and regulatory subunits of rat protein kinase CK2
doi rcsb |
| molecule tags |
Metal binding protein
|
| source organism |
Rattus norvegicus
|
| molecule keywords |
Casein kinase II subunit beta
|
| total genus |
44
|
| structure length |
176
|
| sequence length |
186
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-09-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01214 | CK_II_beta | Casein kinase II regulatory subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | protein kinase ck2 holoenzyme, chain C, domain 1 | protein kinase ck2 holoenzyme, chain C, domain 1 | ||
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb |
#chains in the Genus database with same CATH superfamily 2JMO A; 2M6N A; 1RQF A; 4MD8 A; 1JWH C; 1QF8 A; 4MD9 A; 4DGL A; 2RT9 A; 4NH1 C; 3EED A; 4MD7 A; 2M48 A; 2R6M A; #chains in the Genus database with same CATH topology 2B63 I; 2VPX A; 3CC7 Z; 2JIM A; 1YHQ 1; 1USP A; 3HOY I; 1I6H I; 1ZH1 A; 3CCM 1; 4S1T A; 3CCE Z; 1K8A 1; 1YJW 1; 3HOZ I; 1VQ5 1; 3CCJ Z; 2VUM I; 2K3R A; 2GTH A; 2Y0S A; 4E31 A; 1VQM Z; 3G4S Z; 4NH1 C; 1N8R 1; 1QVG Z; 1VQ9 Z; 4CL1 A; 3NDJ A; 2E2H I; 3HOV I; 3J81 b; 1VQO Z; 2V3V A; 1FDI A; 4HGY A; 3CC2 1; 1S72 1; 3GTO I; 4RVG A; 1YHQ Z; 5C4X I; 2AYD A; 2VF1 A; 1VQ4 Z; 2OTL 1; 3HOW I; 1K83 I; 1Q81 2; 2E7Z A; 4Y7N I; 1VQ5 Z; 1KQS Y; 2JNY A; 1RLY A; 4QTT A; 3TE5 B; 2VPY A; 3MON A; 3CXC Y; 1TWG I; 1Y1V S; 3J81 f; 2P3Y A; 2W04 A; 3D9X A; 1JJ2 Z; 2OZK A; 2I3C A; 2NAP A; 3CC2 Z; 1S72 Z; 4A3L I; 4E2W A; 3QWU A; 3I4N I; 2M6N A; 4BY7 I; 3U50 C; 1W2B Y; 3G6E 1; 1Y1V I; 3VMH A; 2QRE B; 2OTL Z; 1YIJ 1; 2NVX I; 4RS4 A; 5C3E I; 3HOX I; 4MD8 A; 3M4O I; 4NFR A; 2JMO A; 2IV2 X; 3F3F C; 2QA4 1; 3CPW Z; 1KD1 2; 1Q81 1; 1WCM I; 1YJ9 1; 2P28 A; 3VMG A; 3CD6 1; 3CCS 1; 3J80 b; 3CCU 1; 1QF8 A; 4X6A I; 2RHB A; 3G6E Z; 4DQY B; 1ZB8 A; 4E2Y A; 4QTU A; 5FLX f; 1YIJ Z; 2IZ3 A; 2R92 I; 1TFI A; 3OW2 Z; 4HH4 A; 3RZO I; 3P5J B; 4MH4 A; 3CC4 1; 4DGL A; 2JA8 I; 4XX2 A; 1TWF I; 4NBG A; 1VQ7 Z; 1WJ2 A; 3LUS A; 2QA4 Z; 2GU2 A; 5T67 A; 1X0T A; 1N2F A; 3D2L A; 3S17 I; 2OTJ 1; 1WW9 A; 5A2Q b; 4A3J I; 2JIP A; 2DE7 A; 3CCS Z; 3CD6 Z; 1I50 I; 2F4M A; 3CCU Z; 2VPW A; 3I56 Z; 2DE6 A; 4MD9 A; 5IT9 b; 5AN9 F; 3S1M I; 3H0G I; 3BG0 B; 2M48 A; 1R9T I; 2R6M A; 1VQP 1; 1KD1 1; 2WB1 A; 3FQM A; 3CC4 Z; 2O53 A; 3I55 1; 4A3F I; 4NBD A; 4Y52 I; 3JAM b; 3G71 1; 2G2K A; 3CQZ I; 1QYP A; 2JIR A; 1ML8 A; 3CCM Z; 4HGZ A; 3IFU A; 1KQS Z; 3J7A 4; 1YJW Z; 1YI2 1; 3CXC Z; 1RO2 A; 2QRD B; 1VQP Z; 3Q87 A; 5T6B A; 2RT9 A; 3H3V J; 1TWC I; 1ZB9 A; 3S2H I; 2ZAE B; 3CCQ 1; 1Q16 A; 3K7A I; 2Q51 A; 3CME 1; 3G71 Z; 1W2B Z; 5LL6 f; 3CMA 1; 1DL6 A; 2W03 A; 2O4H A; 2OOY B; 1Y8C A; 5D1O B; 3S1R I; 4NBE A; 2E2I I; 3PO3 S; 1KRL A; 3CCV 1; 3NH5 A; 2LFU A; 4RV9 A; 1X3W A; 1VQ8 1; 2IZ4 A; 3NDI A; 2QLV B; 1YI2 Z; 3TDH B; 3GTL I; 3I4M I; 3S15 I; 4MRI A; 5FLM I; 4MD7 A; 3PO3 I; 4RVD A; 5D1O A; 1Q82 2; 2V45 A; 1RO0 A; 3CCQ Z; 2WAQ A; 4BBR I; 4A3E I; 3CME Z; 1VQ6 1; 3CMA Z; 1TWA I; 2J6A A; 2HU9 A; 3S1N I; 3CCV Z; 2R93 I; 2QR1 B; 2RIQ A; 1K73 2; 1VQ8 Z; 1NP6 A; 2NVQ I; 1YUA A; 2V8J A; 3IX0 A; 3GKQ A; 4A93 I; 1QXF A; 3GTP I; 1WZN A; 5C44 I; 3KIF A; 3GTK I; 1Q86 2; 1WII A; 2RPR A; 2V8K A; 1QVF Y; 3IF8 A; 2LEX A; 1LQL A; 1Z03 A; 2AKL A; 3J80 f; 3HKZ A; 1VQ6 Z; 1YJ9 Z; 3M3Y I; 2H85 A; 3KIH A; 3FKI I; 2EGT A; 1AA6 A; 5IP7 I; 1FDO A; 3PO2 I; 1Q82 1; 1Q7Y 2; 4A3I I; 1VQ9 1; 2R7Z I; 3D6W A; 3VTN A; 3CCR 1; 1VQK 1; 2DE5 A; 2KI7 B; 5IP9 I; 5D1P A; 2JA7 I; 4A3G I; 2PMZ A; 4MXU A; 2V8I A; 3S2D I; 4A3C I; 2JS4 A; 2JUB A; 1Y1W I; 5A2Q f; 1VQ4 1; 1K73 1; 4DK1 A; 2NVT I; 3F3P C; 1M90 2; 1L1O C; 1VQN 1; 3GTJ I; 3CCL 1; 2F4O A; 2OTJ Z; 5IT9 f; 3NFZ A; 4A3M I; 1KC8 2; 3VMI A; 1Q86 1; 2BJO A; 4NBH A; 3NH4 A; 4MON A; 3IR7 A; 1YUK A; 3CCR Z; 1VQK Z; 1TWH I; 3GTM S; 3NH8 A; 1M1K 2; 1QVG Y; 1I3Q I; 2QKD A; 3GCF A; 3JAM f; 2YAD A; 2PK7 A; 4NB9 A; 3I55 Z; 4RVF A; 1NJI 2; 1RNI A; 2JR6 A; 5CM2 M; 1Q7Y 1; 3GTM I; 4E2X A; 2QEX 1; 1VQN Z; 3S1Q I; 4E2Z A; 1JWH C; 3CCL Z; 4BXX I; 1SFO I; 5T64 A; 3RZD I; 1X3Z A; 2RBL A; 4E33 A; 1RQF A; 1NUI A; 2E9H A; 1K9M 2; 1RO4 A; 3GTG I; 3HOU I; 3ESW A; 1M90 1; 1Z02 A; 4TNU A; 3VB9 A; 4EWC A; 3T4N B; 2VUG A; 2QRC B; 2NVY I; 1VQL 1; 4NBB A; 3S14 I; 1JJ2 Y; 2PM9 A; 1KC8 1; 3I07 A; 3EED A; 4RVH A; 3FQQ A; 3MZL B; 1PFT A; 4A3D I; 2QEX Z; 2OOX B; 4BBS I; 4NB8 A; 4A3K I; 3BG1 B; 1YIT 1; 1M1K 1; 5FLX b; 1Z01 A; 4E30 A; 1VQ7 1; 2VPZ A; 5C4J I; 1YJN 1; 4NBF A; 1K8A 2; 1SIW A; 1NJI 1; 1QVF Z; 3CC7 1; 2K5R A; 4NOZ A; 4BY1 I; 1N8R 2; 3CPW Y; 4NBA A; 2LIY A; 2HF1 A; 3I56 1; 1VQL Z; 3MZK B; 3CCE 1; 2GTI A; 2JIQ A; 1K9M 1; 4E32 A; 3CCJ 1; 4NBC A; 2E2J I; 4AYB A; 1VQM 1; 1S7M A; 3S16 I; 2KPI A; 3GTQ I; 1USP B; 3G4S 1; 1YIT Z; 3EER A; 1YJN Z; 3OW2 Y; 1VLA A; 2Q4Z A; 2JIO A; 2YU9 I; 4A3B I; 2JA5 I; 1P9N A; 1VQO 1; 2JA6 I; #chains in the Genus database with same CATH homology 2B63 I; 3CC7 Z; 1YHQ 1; 1USP A; 3HOY I; 1I6H I; 1ZH1 A; 3CCM 1; 4S1T A; 3CCE Z; 1K8A 1; 1YJW 1; 3HOZ I; 1VQ5 1; 3CCJ Z; 2VUM I; 2K3R A; 2GTH A; 2Y0S A; 4E31 A; 1VQM Z; 3G4S Z; 4NH1 C; 1N8R 1; 1QVG Z; 1VQ9 Z; 4CL1 A; 3NDJ A; 2E2H I; 3HOV I; 3J81 b; 1VQO Z; 4HGY A; 3CC2 1; 1S72 1; 3GTO I; 4RVG A; 1YHQ Z; 5C4X I; 2VF1 A; 1VQ4 Z; 2OTL 1; 3HOW I; 1K83 I; 1Q81 2; 4Y7N I; 1VQ5 Z; 1KQS Y; 2JNY A; 1RLY A; 4QTT A; 3TE5 B; 3MON A; 3CXC Y; 1TWG I; 1Y1V S; 3J81 f; 2P3Y A; 2W04 A; 3D9X A; 1JJ2 Z; 2OZK A; 2I3C A; 3CC2 Z; 1S72 Z; 4A3L I; 4E2W A; 3QWU A; 3I4N I; 2M6N A; 4BY7 I; 3U50 C; 1W2B Y; 3G6E 1; 1Y1V I; 3VMH A; 2QRE B; 2OTL Z; 1YIJ 1; 2NVX I; 4RS4 A; 5C3E I; 3HOX I; 4MD8 A; 3M4O I; 4NFR A; 2JMO A; 2QA4 1; 3F3F C; 3CPW Z; 1KD1 2; 1Q81 1; 1WCM I; 1YJ9 1; 2P28 A; 3VMG A; 3CD6 1; 3CCS 1; 3J80 b; 3CCU 1; 1QF8 A; 4X6A I; 2RHB A; 3G6E Z; 4DQY B; 1ZB8 A; 4E2Y A; 4QTU A; 5FLX f; 1YIJ Z; 2IZ3 A; 2R92 I; 1TFI A; 3OW2 Z; 4HH4 A; 3RZO I; 3P5J B; 4MH4 A; 3CC4 1; 4DGL A; 2JA8 I; 4XX2 A; 1TWF I; 4NBG A; 1VQ7 Z; 3LUS A; 2QA4 Z; 2GU2 A; 5T67 A; 1X0T A; 1N2F A; 3S17 I; 2OTJ 1; 1WW9 A; 5A2Q b; 4A3J I; 2DE7 A; 3CCS Z; 3CD6 Z; 1I50 I; 2F4M A; 3CCU Z; 3I56 Z; 2DE6 A; 4MD9 A; 5IT9 b; 5AN9 F; 3S1M I; 3H0G I; 3BG0 B; 2M48 A; 1R9T I; 2R6M A; 1VQP 1; 1KD1 1; 2WB1 A; 3FQM A; 3CC4 Z; 2O53 A; 3I55 1; 4A3F I; 4NBD A; 4Y52 I; 3JAM b; 3G71 1; 2G2K A; 3CQZ I; 1QYP A; 1ML8 A; 3CCM Z; 4HGZ A; 3IFU A; 1KQS Z; 3J7A 4; 1YJW Z; 1YI2 1; 3CXC Z; 1RO2 A; 2QRD B; 1VQP Z; 3Q87 A; 5T6B A; 2RT9 A; 3H3V J; 1TWC I; 1ZB9 A; 3S2H I; 2ZAE B; 3CCQ 1; 3K7A I; 2Q51 A; 3CME 1; 3G71 Z; 1W2B Z; 5LL6 f; 3CMA 1; 1DL6 A; 2W03 A; 2O4H A; 2OOY B; 5D1O B; 3S1R I; 4NBE A; 2E2I I; 3PO3 S; 1KRL A; 3CCV 1; 3NH5 A; 2LFU A; 4RV9 A; 1X3W A; 1VQ8 1; 2IZ4 A; 3NDI A; 2QLV B; 1YI2 Z; 3TDH B; 3GTL I; 3I4M I; 3S15 I; 4MRI A; 5FLM I; 4MD7 A; 3PO3 I; 4RVD A; 5D1O A; 1Q82 2; 1RO0 A; 3CCQ Z; 2WAQ A; 4A3E I; 4BBR I; 3CME Z; 1VQ6 1; 3CMA Z; 1TWA I; 2J6A A; 2HU9 A; 3S1N I; 3CCV Z; 2R93 I; 2QR1 B; 2RIQ A; 1K73 2; 1VQ8 Z; 1NP6 A; 2NVQ I; 1YUA A; 2V8J A; 3IX0 A; 3GKQ A; 4A93 I; 3GTP I; 5C44 I; 3KIF A; 3GTK I; 1Q86 2; 1WII A; 2RPR A; 2V8K A; 1QVF Y; 3IF8 A; 1LQL A; 1Z03 A; 2AKL A; 3J80 f; 3HKZ A; 1VQ6 Z; 1YJ9 Z; 3M3Y I; 2H85 A; 3KIH A; 3FKI I; 2EGT A; 5IP7 I; 3PO2 I; 1Q82 1; 1Q7Y 2; 4A3I I; 1VQ9 1; 2R7Z I; 3D6W A; 3VTN A; 3CCR 1; 1VQK 1; 2DE5 A; 2KI7 B; 5IP9 I; 5D1P A; 2JA7 I; 4A3G I; 2PMZ A; 4MXU A; 2V8I A; 3S2D I; 4A3C I; 2JS4 A; 2JUB A; 1Y1W I; 5A2Q f; 1VQ4 1; 1K73 1; 4DK1 A; 2NVT I; 3F3P C; 1M90 2; 1L1O C; 1VQN 1; 3GTJ I; 3CCL 1; 2F4O A; 2OTJ Z; 5IT9 f; 3NFZ A; 4A3M I; 1KC8 2; 3VMI A; 1Q86 1; 2BJO A; 4NBH A; 3NH4 A; 4MON A; 1YUK A; 3CCR Z; 1VQK Z; 1TWH I; 3GTM S; 3NH8 A; 1M1K 2; 1QVG Y; 1I3Q I; 2QKD A; 3GCF A; 3JAM f; 2YAD A; 2PK7 A; 4NB9 A; 3I55 Z; 4RVF A; 1NJI 2; 1RNI A; 2JR6 A; 5CM2 M; 1Q7Y 1; 3GTM I; 4E2X A; 2QEX 1; 1VQN Z; 3S1Q I; 4E2Z A; 1JWH C; 3CCL Z; 4BXX I; 1SFO I; 5T64 A; 3RZD I; 1X3Z A; 2RBL A; 4E33 A; 1RQF A; 1NUI A; 2E9H A; 1K9M 2; 1RO4 A; 3GTG I; 3HOU I; 3ESW A; 1M90 1; 1Z02 A; 4TNU A; 3VB9 A; 4EWC A; 3T4N B; 2VUG A; 2QRC B; 2NVY I; 1VQL 1; 4NBB A; 3S14 I; 1JJ2 Y; 2PM9 A; 1KC8 1; 3I07 A; 3EED A; 4RVH A; 3FQQ A; 3MZL B; 1PFT A; 4A3D I; 2QEX Z; 2OOX B; 4BBS I; 4NB8 A; 4A3K I; 3BG1 B; 1YIT 1; 1M1K 1; 5FLX b; 1Z01 A; 4E30 A; 1VQ7 1; 5C4J I; 1YJN 1; 4NBF A; 1K8A 2; 1NJI 1; 1QVF Z; 3CC7 1; 2K5R A; 4NOZ A; 4BY1 I; 1N8R 2; 3CPW Y; 4NBA A; 2LIY A; 2HF1 A; 3I56 1; 1VQL Z; 3MZK B; 3CCE 1; 2GTI A; 1K9M 1; 4E32 A; 3CCJ 1; 4NBC A; 2E2J I; 4AYB A; 1VQM 1; 1S7M A; 3S16 I; 2KPI A; 3GTQ I; 1USP B; 3G4S 1; 1YIT Z; 3EER A; 1YJN Z; 3OW2 Y; 1VLA A; 2Q4Z A; 2YU9 I; 4A3B I; 2JA5 I; 1P9N A; 1VQO 1; 2JA6 I;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
