The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
52
|
structure length |
52
|
Chain Sequence |
TDEALKPCPRCQSPAKYQPHKKRGLCSRLACGFDFCVLCLCAYHGSEDCRRG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The zinc-binding region (ZBR) fragment of Emi2 can inhibit APC/C by targeting its association with the coactivator Cdc20 and UBE2C-mediated ubiquitylation
pubmed doi rcsb |
| molecule tags |
Metal binding protein
|
| source organism |
Mus musculus
|
| molecule keywords |
F-box only protein 43
|
| total genus |
10
|
| structure length |
52
|
| sequence length |
52
|
| ec nomenclature | |
| pdb deposition date | 2013-07-05 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb |
#chains in the Genus database with same CATH superfamily 4NH1 C; 2R6M A; 1RQF A; 2JMO A; 2M48 A; 4DGL A; 2RT9 A; 2M6N A; 3EED A; 4MD8 A; 4MD7 A; 4MD9 A; 1JWH C; 1QF8 A; #chains in the Genus database with same CATH topology 1YIT Z; 1Y1V S; 3FQM A; 5A2Q f; 3CCL Z; 2B63 I; 1YIT 1; 1VQL Z; 2VUM I; 4A3G I; 1VQL 1; 1R9T I; 1KC8 1; 3HOV I; 1X3W A; 3CCV Z; 4NBC A; 2QLV B; 3CME Z; 3CD6 1; 1VQ4 Z; 2R7Z I; 3CCU 1; 3S1M I; 1AA6 A; 2VPY A; 1Z03 A; 2IZ4 A; 3NH5 A; 3CME 1; 3CCE Z; 1ZB9 A; 1VQ8 Z; 1JWH C; 3VMG A; 3PO3 S; 4NOZ A; 3M4O I; 1RNI A; 2QA4 1; 1Z02 A; 3J80 b; 4MON A; 2F4O A; 2E2H I; 3J81 f; 2RIQ A; 2R92 I; 2GTH A; 4E33 A; 1YUK A; 5C44 I; 4QTU A; 1VQ6 1; 5FLX f; 3FKI I; 1NJI 1; 4AYB A; 3FQQ A; 1I50 I; 3ESW A; 4Y52 I; 4A3K I; 3S15 I; 3H0G I; 5T67 A; 1VQP Z; 4E2Z A; 3CCM Z; 2OTL Z; 4A3L I; 4NBD A; 2JS4 A; 1VQP 1; 3CPW Z; 2OTL 1; 1QVF Y; 5IP9 I; 1RQF A; 2AYD A; 2P3Y A; 1Q16 A; 4Y7N I; 3G6E Z; 2R93 I; 1VQ9 Z; 3GTP I; 3CCJ Z; 1TFI A; 3G6E 1; 1ZH1 A; 3CCQ 1; 4MD7 A; 4DK1 A; 4TNU A; 4A3J I; 3BG0 B; 4BBS I; 1YI2 Z; 2PK7 A; 1QXF A; 1L1O C; 1VQM 1; 1X3Z A; 2VUG A; 4MXU A; 2OTJ Z; 1TWC I; 3RZO I; 3NDI A; 2JIR A; 3H3V J; 3CXC Z; 1VLA A; 4DGL A; 2OTJ 1; 3LUS A; 4XX2 A; 3MZK B; 4RVH A; 1YJ9 Z; 2Q51 A; 5FLM I; 1WJ2 A; 3EER A; 1Q7Y 1; 1Q81 1; 1QVG Y; 3D9X A; 1K83 I; 3JAM b; 4A3E I; 5C3E I; 3CC7 Z; 3CMA Z; 2QRE B; 4HH4 A; 5CM2 M; 2PM9 A; 1YJW 1; 3CC7 1; 1TWH I; 3I56 1; 5IT9 f; 3CMA 1; 1VQO 1; 1Z01 A; 4RVG A; 4BXX I; 3TE5 B; 1I3Q I; 1N8R 2; 2O4H A; 3IR7 A; 3CCR Z; 2KPI A; 3MON A; 2JA7 I; 1W2B Y; 2YAD A; 1RO4 A; 3CCR 1; 2YU9 I; 1Q82 2; 4NBE A; 1WW9 A; 3NH4 A; 3CCL 1; 3I07 A; 1NJI 2; 2RHB A; 2E2I I; 4MD8 A; 3HOX I; 3J80 f; 3NFZ A; 4MD9 A; 1Y1V I; 3S1R I; 3CCS Z; 4NBF A; 3CCV 1; 4NBH A; 1VQ4 1; 3S2H I; 3S1N I; 1KQS Y; 3Q87 A; 4NB8 A; 4E2Y A; 3CCE 1; 1Y8C A; 3T4N B; 1VQ8 1; 2VF1 A; 2JIQ A; 2M6N A; 2W03 A; 2NVT I; 1JJ2 Z; 4CL1 A; 2NVQ I; 2G2K A; 1YIJ Z; 3U50 C; 2VPW A; 1M90 1; 1RLY A; 3G71 Z; 1WCM I; 3OW2 Z; 2BJO A; 4NBB A; 1QYP A; 4HGY A; 4E30 A; 3G71 1; 2Q4Z A; 3M3Y I; 3PO3 I; 2V3V A; 2QEX Z; 2V8K A; 2EGT A; 2QEX 1; 2IZ3 A; 2GTI A; 3CCM 1; 2V8J A; 4A3I I; 2JA5 I; 3D6W A; 2QR1 B; 1S72 Z; 2GU2 A; 1VQN Z; 1VQ7 Z; 3I4M I; 2NAP A; 1K8A 1; 1S72 1; 4A3C I; 1ZB8 A; 5IP7 I; 1VQ9 1; 3S2D I; 4RVF A; 4E32 A; 2LIY A; 2RT9 A; 3CCJ 1; 3EED A; 2RBL A; 2RPR A; 3J81 b; 1KD1 2; 2V8I A; 3S1Q I; 2H85 A; 4QTT A; 3JAM f; 4NBA A; 3IFU A; 3RZD I; 1SFO I; 1NUI A; 3IF8 A; 1YI2 1; 1S7M A; 2OOY B; 2O53 A; 1YJN Z; 2V45 A; 5D1O B; 5AN9 F; 1USP B; 1KC8 2; 3HOW I; 1YJN 1; 3PO2 I; 3F3F C; 1SIW A; 1X0T A; 4A3F I; 2NVY I; 5C4J I; 4BY1 I; 1YJ9 1; 3CC4 Z; 1I6H I; 2WAQ A; 2WB1 A; 1QF8 A; 1NP6 A; 4E31 A; 1Y1W I; 3S14 I; 1RO2 A; 2VPX A; 2DE6 A; 4A3M I; 3G4S Z; 3D2L A; 4A3B I; 4NB9 A; 4NFR A; 3TDH B; 3GTM S; 1TWA I; 4EWC A; 1Q86 1; 2NVX I; 3GCF A; 3I55 Z; 1VQK Z; 3CQZ I; 3CPW Y; 3HOZ I; 2E9H A; 2LFU A; 3I55 1; 1VQK 1; 1TWF I; 2E7Z A; 1QVF Z; 2JA6 I; 5T6B A; 2JNY A; 3HOY I; 2JIM A; 3GTL I; 5C4X I; 1N2F A; 3GTO I; 2W04 A; 2K3R A; 2QRD B; 1YHQ Z; 2QRC B; 3GTM I; 3CCS 1; 3NDJ A; 2DE5 A; 2JUB A; 1YHQ 1; 2F4M A; 2HF1 A; 2K5R A; 3VMI A; 5IT9 b; 5D1P A; 3CD6 Z; 3CCU Z; 4NBG A; 4NH1 C; 4HGZ A; 4S1T A; 2KI7 B; 2OZK A; 1K8A 2; 4BBR I; 1M1K 1; 4BY7 I; 2I3C A; 3CXC Y; 5A2Q b; 4E2X A; 3QWU A; 1TWG I; 1K73 1; 1YIJ 1; 2OOX B; 2QA4 Z; 1PFT A; 1K9M 1; 1N8R 1; 2QKD A; 1KRL A; 1FDI A; 3VMH A; 1QVG Z; 1VQ6 Z; 1YUA A; 4X6A I; 1P9N A; 2ZAE B; 4RVD A; 1Q82 1; 3IX0 A; 2JA8 I; 3KIH A; 2LEX A; 4MH4 A; 2R6M A; 3P5J B; 1Q81 2; 1Q7Y 2; 2P28 A; 1LQL A; 3CC2 Z; 1VQ5 Z; 1W2B Z; 3VTN A; 1VQN 1; 1RO0 A; 4MRI A; 1VQ7 1; 3CC2 1; 2Y0S A; 1VQ5 1; 5D1O A; 3GTJ I; 3HKZ A; 1USP A; 5FLX b; 4A93 I; 4RS4 A; 2M48 A; 3J7A 4; 2VPZ A; 3CCQ Z; 1Q86 2; 3F3P C; 3I4N I; 4RV9 A; 5LL6 f; 3VB9 A; 2DE7 A; 2JMO A; 4A3D I; 1KQS Z; 1VQM Z; 3HOU I; 1JJ2 Y; 1DL6 A; 1WZN A; 2JIO A; 3NH8 A; 2J6A A; 3OW2 Y; 3CC4 1; 3BG1 B; 1ML8 A; 3GTK I; 3GTQ I; 2IV2 X; 5T64 A; 3S17 I; 2JR6 A; 1WII A; 3MZL B; 2E2J I; 4DQY B; 2JIP A; 2PMZ A; 3K7A I; 2HU9 A; 3G4S 1; 3GKQ A; 3GTG I; 1YJW Z; 3I56 Z; 1FDO A; 2AKL A; 1VQO Z; 1M1K 2; 4E2W A; 3KIF A; 1M90 2; 1KD1 1; 1K73 2; 3S16 I; 1K9M 2; #chains in the Genus database with same CATH homology 1YIT Z; 1Y1V S; 3FQM A; 5A2Q f; 3CCL Z; 2B63 I; 1YIT 1; 1VQL Z; 2VUM I; 4A3G I; 1VQL 1; 1R9T I; 1KC8 1; 3HOV I; 1X3W A; 3CCV Z; 4NBC A; 2QLV B; 3CME Z; 3CD6 1; 1VQ4 Z; 2R7Z I; 3CCU 1; 3S1M I; 1Z03 A; 2IZ4 A; 3NH5 A; 3CME 1; 3CCE Z; 1ZB9 A; 1VQ8 Z; 1JWH C; 3VMG A; 3PO3 S; 4NOZ A; 3M4O I; 1RNI A; 2QA4 1; 1Z02 A; 3J80 b; 4MON A; 2F4O A; 2E2H I; 3J81 f; 2RIQ A; 2R92 I; 2GTH A; 4E33 A; 1YUK A; 5C44 I; 4QTU A; 1VQ6 1; 5FLX f; 3FKI I; 1NJI 1; 4AYB A; 3FQQ A; 1I50 I; 3ESW A; 4Y52 I; 4A3K I; 3S15 I; 3H0G I; 5T67 A; 1VQP Z; 4E2Z A; 3CCM Z; 2OTL Z; 4A3L I; 4NBD A; 2JS4 A; 1VQP 1; 3CPW Z; 2OTL 1; 1QVF Y; 5IP9 I; 1RQF A; 2P3Y A; 4Y7N I; 3G6E Z; 2R93 I; 1VQ9 Z; 3GTP I; 3CCJ Z; 1TFI A; 3G6E 1; 1ZH1 A; 3CCQ 1; 4MD7 A; 4DK1 A; 4TNU A; 4A3J I; 3BG0 B; 4BBS I; 1YI2 Z; 2PK7 A; 1VQM 1; 1L1O C; 1X3Z A; 2VUG A; 4MXU A; 2OTJ Z; 1TWC I; 3RZO I; 3NDI A; 3H3V J; 3CXC Z; 1VLA A; 4DGL A; 2OTJ 1; 3LUS A; 4XX2 A; 3MZK B; 4RVH A; 1YJ9 Z; 2Q51 A; 5FLM I; 3EER A; 1Q81 1; 1Q7Y 1; 1QVG Y; 3D9X A; 1K83 I; 3JAM b; 4A3E I; 5C3E I; 3CC7 Z; 3CMA Z; 2QRE B; 4HH4 A; 5CM2 M; 2PM9 A; 1YJW 1; 3CC7 1; 1TWH I; 3I56 1; 5IT9 f; 3CMA 1; 1VQO 1; 1Z01 A; 4RVG A; 4BXX I; 3TE5 B; 1I3Q I; 1N8R 2; 2O4H A; 3CCR Z; 2KPI A; 3MON A; 2JA7 I; 1W2B Y; 2YAD A; 1RO4 A; 3CCR 1; 2YU9 I; 1Q82 2; 4NBE A; 1WW9 A; 3NH4 A; 3CCL 1; 3I07 A; 1NJI 2; 2RHB A; 2E2I I; 4MD8 A; 3HOX I; 3J80 f; 3NFZ A; 4MD9 A; 1Y1V I; 3S1R I; 3CCS Z; 4NBF A; 3CCV 1; 4NBH A; 1VQ4 1; 3S2H I; 3S1N I; 1KQS Y; 3Q87 A; 4NB8 A; 4E2Y A; 3CCE 1; 3T4N B; 1VQ8 1; 2VF1 A; 2M6N A; 2W03 A; 2NVT I; 1JJ2 Z; 4CL1 A; 2NVQ I; 2G2K A; 1YIJ Z; 3U50 C; 1M90 1; 1RLY A; 3G71 Z; 1WCM I; 3OW2 Z; 2BJO A; 4NBB A; 1QYP A; 4HGY A; 4E30 A; 3G71 1; 2Q4Z A; 3M3Y I; 3PO3 I; 2QEX Z; 2V8K A; 2EGT A; 2QEX 1; 2IZ3 A; 2GTI A; 3CCM 1; 2V8J A; 4A3I I; 2JA5 I; 3D6W A; 2QR1 B; 1S72 Z; 2GU2 A; 1VQN Z; 1VQ7 Z; 3I4M I; 1K8A 1; 4A3C I; 1S72 1; 1ZB8 A; 5IP7 I; 1VQ9 1; 3S2D I; 4RVF A; 4E32 A; 2LIY A; 2RT9 A; 3CCJ 1; 3EED A; 2RBL A; 2RPR A; 3J81 b; 1KD1 2; 2V8I A; 3S1Q I; 2H85 A; 4QTT A; 3JAM f; 4NBA A; 3IFU A; 3RZD I; 1SFO I; 1NUI A; 3IF8 A; 1YI2 1; 1S7M A; 2OOY B; 2O53 A; 1YJN Z; 5D1O B; 5AN9 F; 1USP B; 1KC8 2; 3HOW I; 1YJN 1; 3PO2 I; 3F3F C; 1X0T A; 4A3F I; 2NVY I; 5C4J I; 4BY1 I; 1YJ9 1; 3CC4 Z; 1I6H I; 2WAQ A; 2WB1 A; 1QF8 A; 1NP6 A; 4E31 A; 1Y1W I; 3S14 I; 1RO2 A; 2DE6 A; 4A3M I; 3G4S Z; 4A3B I; 4NB9 A; 4NFR A; 3TDH B; 3GTM S; 1TWA I; 4EWC A; 1Q86 1; 2NVX I; 3GCF A; 3I55 Z; 1VQK Z; 3CQZ I; 3CPW Y; 3HOZ I; 2E9H A; 2LFU A; 3I55 1; 1VQK 1; 1TWF I; 1QVF Z; 2JA6 I; 5T6B A; 2JNY A; 3HOY I; 3GTL I; 5C4X I; 1N2F A; 3GTO I; 2W04 A; 2K3R A; 2QRD B; 1YHQ Z; 2QRC B; 3GTM I; 3CCS 1; 3NDJ A; 2DE5 A; 2JUB A; 1YHQ 1; 2F4M A; 2HF1 A; 2K5R A; 3VMI A; 5IT9 b; 5D1P A; 3CD6 Z; 3CCU Z; 4NBG A; 4NH1 C; 4HGZ A; 4S1T A; 2KI7 B; 2OZK A; 1K8A 2; 4BBR I; 1M1K 1; 4BY7 I; 2I3C A; 3CXC Y; 5A2Q b; 4E2X A; 3QWU A; 1TWG I; 1K73 1; 1YIJ 1; 2OOX B; 2QA4 Z; 1PFT A; 1K9M 1; 1N8R 1; 2QKD A; 1KRL A; 3VMH A; 1QVG Z; 1VQ6 Z; 1YUA A; 4X6A I; 1P9N A; 2ZAE B; 4RVD A; 1Q82 1; 3IX0 A; 2JA8 I; 3KIH A; 4MH4 A; 2R6M A; 3P5J B; 1Q81 2; 1Q7Y 2; 2P28 A; 1LQL A; 3CC2 Z; 1VQ5 Z; 1W2B Z; 3VTN A; 1VQN 1; 1RO0 A; 4MRI A; 1VQ7 1; 3CC2 1; 2Y0S A; 1VQ5 1; 5D1O A; 3GTJ I; 3HKZ A; 1USP A; 5FLX b; 4A93 I; 4RS4 A; 2M48 A; 3J7A 4; 3CCQ Z; 1Q86 2; 3F3P C; 3I4N I; 4RV9 A; 5LL6 f; 3VB9 A; 2DE7 A; 2JMO A; 4A3D I; 1KQS Z; 1VQM Z; 3HOU I; 1JJ2 Y; 1DL6 A; 3NH8 A; 2J6A A; 3OW2 Y; 3CC4 1; 3BG1 B; 1ML8 A; 3GTK I; 3GTQ I; 5T64 A; 3S17 I; 2JR6 A; 1WII A; 3MZL B; 2E2J I; 4DQY B; 2PMZ A; 3K7A I; 2HU9 A; 3G4S 1; 3GKQ A; 3GTG I; 1YJW Z; 3I56 Z; 2AKL A; 1VQO Z; 1M1K 2; 4E2W A; 3KIF A; 1M90 2; 1KD1 1; 1K73 2; 3S16 I; 1K9M 2;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
