4LOM | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	191
structure length	191
Chain Sequence	SRRARIERRTRESDIVIELDLDGTGQVAVDTGVPFYDHMLTALGSHASFDLTVRATGDVEIEAHHTIEDTAIALGTALGQALGDKRGIRRFGDAFIPMDETLAHAAVDLSGRPYCVHTGEPDHLQHTTIAGSSVPYHTVINRHVFESLAANARIALHVRVLYGRDPHHITEAQYKAVARALRQAVEPDPRV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Mycobacterium tuberculosis
publication title	Crystal structures of the native, substrate- bound and inhibited forms of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase rcsb
molecule keywords	Imidazoleglycerol-phosphate dehydratase
total genus	57
structure length	191
sequence length	191
ec nomenclature	ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date	2013-07-13

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.230.40	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	Imidazole glycerol phosphate dehydratase; domain 1	4lomA01
3.30.230.40	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	Imidazole glycerol phosphate dehydratase; domain 1	4lomA02

5EKWA 5DNLA 4QNJA 5EL9A 2AE8A 4MU4A 2F1DA 4GQUA 1RHYA 4QNKA 4LPFA 5ELWA 4LOMA 4MU3A 4MU0A 4MU1A 5DNXA
chains in the Genus database with same CATH superfamily

4OZEA 3H4LA 2A2DA 4GKJI 4DV2E 1R6LA 4WUDA 4OO1B 4AQYE 1Y60A 2R42A 1YH8A 4JI2E 5K36C 4DR3I 4HXZA 5JEAF 4R1FA 1Z0WA 2EFGA 4GKJE 4YY3I 4DPYA 2X36A 5IWAE 4DPUA 3K17A 4J3DA 1UDNA 4LF5E 4X66E 1OYRA 5FLXQ 4YY3E 3GONA 4IZJD 2HK2A 5JEAA 1MU5A 4DR2I 1HK7A 1FJGI 4MU0A 4X62I 1QZRA 4FW6A 1RR9A 2UXDE 5C0XF 1HR0I 1N34E 3V2UC 4JI1I 2BM0A 2VQFI 4DR2E 2R3VA 4K0KE 4U3DA 5GMEA 4UT4A 1N0VC 2HFSA 1K47A 3U1YA 5JEAC 4AM3A 1FNMA 4JI0I 2WNRA 4FW9A 5C0XA 1IBKI 2UUAI 4B3RE 4JI2I 5DRRA 3ZM7A 4IFDF 2WW4A 1NZ0A 2ZITA 4BA2A 1HNXI 2AJ4A 4PRXA 4HACA 1Z0GA 5A2QC 3QT6A 2NN6E 4DUZE 1D6TA 1NHIA 5C0XD 4DR6E 5K36E 2F4VI 3B4TA 4FN5A 1XNRE 4IFDA 3T1YE 5LMUI 2CZ9A 4KQVA 3PS2A 4KHPI 2CG9A 3M85D 1Z59A 4X64E 2Z5CA 5LMUE 4OO1F 2Q2EB 2BA1D 1XMQE 1Z0BA 2C37B 3GLLA 2GO3A 1FKAE 1OYSA 4IFDC 3WU5A 4DPTA 3H1CA 1Z0CA 2Z5BB 3L7ZB 1USVA 4FW3A 2IERA 4OO1A 2GQ0A 4JI8I 4LF4E 2BR2A 2NPFA 1NHHA 2HFUA 1ZXNA 4X65I 2ZM6I 1PVGA 2WP8B 4DR4I 1Z5BA 3QT5A 2C39A 4OO1C 4LFAI 4OO1D 3GMEA 4NXMI 4X65E 1HNWI 4DV6I 3LPSA 2ZM6E 4DR1I 2UXBI 4LCGA 2JEAB 1N0UA 3HKMA 2IESA 2PO0B 3JAMC 4DV4I 4LFAE 3CWVA 4NXNE 1HNWE 4DR1E 2UXCI 2GS8A 1NHJA 2ZBKB 4JG4A 1KIJA 4FWHA 4AQYI 1PIEA 2V34A 4MQYA 3K85A 2UXCE 2PNLA 1IBLI 5IWAI 3J80C 4B3TI 2UU9I 4IZJA 3WU4A 3Q6NA 1UEKA 2JEBB 3P3GA 4LF5I 4X66I 3Q6MA 3M85G 2DEJA 1IBLE 4HY1A 4DPWA 1VI7A 4URLA 1UDQA 4U3BA 4B3TE 5LMNE 2UU9E 4RPFA 1XNQE 4DV0I 4FWGA 1RREA 4DUYE 2X7IA 3ZKBA 4DV7I 1J5EI 1R6MA 1N33E 2UXDI 1N34I 2O1VA 3GCMA 2JE6B 4LOMA 2NN6D 4BA1A 4DV0E 4K0KI 3PRYA 3CDJA 4Z7CA 4DV7E 1J5EE 4YHHE 4FW5A 2BV3A 2CVEA 4JYAE 3B82A 3QT8A 4DPXA 4DV5E 1Y5YA 2PO2B 2C37A 4JI5E 2Z5EA 4OX9E 2E5LE 4B3RI 2UUCE 3M6AA 5FWKA 2J65A 5GMDA 2Z5BA 3L7ZA 1IBME 2XEXA 4DR7E 2V2VA 2NN6B 4DUZI 3J80Q 1UDOA 5L3JA 2BA0G 5K36B 5DRPA 1OYPA 4LF8E 4DR6I 3PS3A 1MG7A 1U2RA 3M7ND 3V5RA 1XNRI 3T1YI 4GKKE 4AIDA 3D4JA 5C0XC 4LF9I 3ZZUA 4B3SI 1EI1A 2PNZB 4X64I 4LF7I 2VESA 4PRVA 1XMQI 1MX0A 4MYUA 4DU7A 4LF9E 2OI2A 2PO0A 3J81C 1I94E 4B3SE 1N32I 4B3MI 4LF7E 1EA6A 4WUBA 3CDIA 1FWKA 1N36E 4LFCE 1N32E 1KTVA 4B3ME 4LF4I 1Z5AA 4DV3I 5DRQA 3B78A 3P3EA 4JI6I 2AE8A 3UHMA 2JEBA 4DV3E 1HNZE 5JEAE 2PO1B 3QT7A 4JI7I 1XMOI 1OJ4A 5BR8I 4GQUA 4JI6E 2V2QA 1B62A 4JI7E 1XMOE 2HKJA 5A2QQ 2CGEA 5BR8E 4NXNI 4DXLA 4DV1E 3J7AM 4QNJA 2VQEE 3DD6A 2UUBE 2IOQA 1A6FA 5C0XE 1Z0EA 2DEIA 4HACB 1S16A 3J81Q 2NN6F 3M7NG 2PO2A 5DROA 5K36F 1H73A 4UTGA 4IFDB 2O1TA 4LCFA 1Y4SA 4IZKB 4JI4I 1RHYA 2A2CA 5LMNI 1XNQI 3ZZ0A 4DR5E 4ISAA 2NN6A 4DUYI 4IFDE 2Z5CB 1N33I 3T1HE 4JI4E 4I3HA 2O1UA 1Z0TA 2V8PA 2BA1G 4P7AA 1DARA 3PYFA 4JI3E 1Z0VA 4LFBE 2C38B 1E3PA 3KRNA 4YHHI 4JYAI 2NN6C 2PNZA 1E3HA 1H74A 2LJPA 5EL9A 4DV5I 2BR2B 4JI5I 5K36D 4OX9I 2E5LI 1VISA 4MU3A 1Y4UA 2UUCI 1FWLA 4LCHA 3JAMQ 2O3ZA 4OO1E 1Y6ZA 1KKHA 4AIMA 4DR3E 1IBMI 4DR7I 3WU6A 2C39B 3U1KA 1WUUA 1H72C 3ZZTA 4Z7YA 4LF8I 4MU4A 3HULA 1USUA 2IOPA 4GKKI 2J7KA 4MU1A 2PO1A 1FJGE 4X62E 2V2ZA 2HKEA 5DNLA 2HHHI 1HR0E 2WP8A 5JEAD 1Z5CA 4JI1E 2VQFE 4OKGA 4MYTA 3J7AG 3P06A 1I94I 1ZM3A 4N3OA 3HJCA 3WU3A 3K1JA 4IZJB 2HHHE 2JEAA 4LFCI 2PNMA 1N36I 1UDSA 4IS9A 3P3CA 4XTJA 4HYMA 5ELWA 4FW4A 4JI0E 2O1WA 1IBKE 4M1KA 2UUAE 5DNXA 1ELOA 4FW7A 3P76A 2VF3A 1FI4A 4NBQA 1HNXE 2JT2A 4DU8A 5JEAB 1HNZI 4BA1B 4IZKA 1H7SA 3NZKA 2HK3A 2E1RA 4JV5I 2GO4A 1YHCA 2F4VE 5IT9C 1S4EA 1B63A 1ZXMA 2F1DA 4KHPE 4JV5E 3PS1A 4DV1I 3ZKDA 2VQEI 4IFDD 2UUBI 3PYEA 3LNUA 2WNRB 2C38A 5C0XB 4USMA 1XXEA 4QNKA 4USKA 2JE6A 1BKNA 4BA2B 1XHKA 1P42A 4PU9A 5FLXC 3Q1QA 5LL6R 4P52A 3B8HA 3LTOA 4JI8E 1H7UA 4EMDA 3F0NA 4DR5I 1ZM2A 4WUCA 1KVKA 3T1HI 4LPFA 4LF6I 3OTOI 4DR4E 1ZM4A 4ED4A 4JI3I 5EKWA 2BM1A 1ZM9A 3PYGA 4ZVIA 4NXME 2BA0D 4DV6E 2UXBE 4LF6E 3OTOE 3PYDA 4LFBI 4MDTA 5K36A 4DV2I 5IT9Q 4DV4E 4FWDA 1PKPA
chains in the Genus database with same CATH topology

5EKWA 5DNLA 4QNJA 5EL9A 2AE8A 4MU4A 2F1DA 4GQUA 1RHYA 4QNKA 4LPFA 5ELWA 4LOMA 4MU3A 4MU0A 4MU1A 5DNXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5EKW A;  5DNL A;  4QNJ A;  5EL9 A;  2AE8 A;  4MU4 A;  2F1D A;  4GQU A;  1RHY A;  4QNK A;  4LPF A;  5ELW A;  4LOM A;  4MU3 A;  4MU0 A;  4MU1 A;  5DNX A; 
#chains in the Genus database with same CATH topology
 4OZE A;  3H4L A;  2A2D A;  4GKJ I;  4DV2 E;  1R6L A;  4WUD A;  4OO1 B;  4AQY E;  1Y60 A;  2R42 A;  1YH8 A;  4JI2 E;  5K36 C;  4DR3 I;  4HXZ A;  5JEA F;  4R1F A;  1Z0W A;  2EFG A;  4GKJ E;  4YY3 I;  4DPY A;  2X36 A;  5IWA E;  4DPU A;  3K17 A;  4J3D A;  1UDN A;  4LF5 E;  4X66 E;  1OYR A;  5FLX Q;  4YY3 E;  3GON A;  4IZJ D;  2HK2 A;  5JEA A;  1MU5 A;  4DR2 I;  1HK7 A;  1FJG I;  4MU0 A;  4X62 I;  1QZR A;  4FW6 A;  1RR9 A;  2UXD E;  5C0X F;  1HR0 I;  1N34 E;  3V2U C;  4JI1 I;  2BM0 A;  2VQF I;  4DR2 E;  2R3V A;  4K0K E;  4U3D A;  5GME A;  4UT4 A;  1N0V C;  2HFS A;  1K47 A;  3U1Y A;  5JEA C;  4AM3 A;  1FNM A;  4JI0 I;  2WNR A;  4FW9 A;  5C0X A;  1IBK I;  2UUA I;  4B3R E;  4JI2 I;  5DRR A;  3ZM7 A;  4IFD F;  2WW4 A;  1NZ0 A;  2ZIT A;  4BA2 A;  1HNX I;  2AJ4 A;  4PRX A;  4HAC A;  1Z0G A;  5A2Q C;  3QT6 A;  2NN6 E;  4DUZ E;  1D6T A;  1NHI A;  5C0X D;  4DR6 E;  5K36 E;  2F4V I;  3B4T A;  4FN5 A;  1XNR E;  4IFD A;  3T1Y E;  5LMU I;  2CZ9 A;  4KQV A;  3PS2 A;  4KHP I;  2CG9 A;  3M85 D;  1Z59 A;  4X64 E;  2Z5C A;  5LMU E;  4OO1 F;  2Q2E B;  2BA1 D;  1XMQ E;  1Z0B A;  2C37 B;  3GLL A;  2GO3 A;  1FKA E;  1OYS A;  4IFD C;  3WU5 A;  4DPT A;  3H1C A;  1Z0C A;  2Z5B B;  3L7Z B;  1USV A;  4FW3 A;  2IER A;  4OO1 A;  2GQ0 A;  4JI8 I;  4LF4 E;  2BR2 A;  2NPF A;  1NHH A;  2HFU A;  1ZXN A;  4X65 I;  2ZM6 I;  1PVG A;  2WP8 B;  4DR4 I;  1Z5B A;  3QT5 A;  2C39 A;  4OO1 C;  4LFA I;  4OO1 D;  3GME A;  4NXM I;  4X65 E;  1HNW I;  4DV6 I;  3LPS A;  2ZM6 E;  4DR1 I;  2UXB I;  4LCG A;  2JEA B;  1N0U A;  3HKM A;  2IES A;  2PO0 B;  3JAM C;  4DV4 I;  4LFA E;  3CWV A;  4NXN E;  1HNW E;  4DR1 E;  2UXC I;  2GS8 A;  1NHJ A;  2ZBK B;  4JG4 A;  1KIJ A;  4FWH A;  4AQY I;  1PIE A;  2V34 A;  4MQY A;  3K85 A;  2UXC E;  2PNL A;  1IBL I;  5IWA I;  3J80 C;  4B3T I;  2UU9 I;  4IZJ A;  3WU4 A;  3Q6N A;  1UEK A;  2JEB B;  3P3G A;  4LF5 I;  4X66 I;  3Q6M A;  3M85 G;  2DEJ A;  1IBL E;  4HY1 A;  4DPW A;  1VI7 A;  4URL A;  1UDQ A;  4U3B A;  4B3T E;  5LMN E;  2UU9 E;  4RPF A;  1XNQ E;  4DV0 I;  4FWG A;  1RRE A;  4DUY E;  2X7I A;  3ZKB A;  4DV7 I;  1J5E I;  1R6M A;  1N33 E;  2UXD I;  1N34 I;  2O1V A;  3GCM A;  2JE6 B;  4LOM A;  2NN6 D;  4BA1 A;  4DV0 E;  4K0K I;  3PRY A;  3CDJ A;  4Z7C A;  4DV7 E;  1J5E E;  4YHH E;  4FW5 A;  2BV3 A;  2CVE A;  4JYA E;  3B82 A;  3QT8 A;  4DPX A;  4DV5 E;  1Y5Y A;  2PO2 B;  2C37 A;  4JI5 E;  2Z5E A;  4OX9 E;  2E5L E;  4B3R I;  2UUC E;  3M6A A;  5FWK A;  2J65 A;  5GMD A;  2Z5B A;  3L7Z A;  1IBM E;  2XEX A;  4DR7 E;  2V2V A;  2NN6 B;  4DUZ I;  3J80 Q;  1UDO A;  5L3J A;  2BA0 G;  5K36 B;  5DRP A;  1OYP A;  4LF8 E;  4DR6 I;  3PS3 A;  1MG7 A;  1U2R A;  3M7N D;  3V5R A;  1XNR I;  3T1Y I;  4GKK E;  4AID A;  3D4J A;  5C0X C;  4LF9 I;  3ZZU A;  4B3S I;  1EI1 A;  2PNZ B;  4X64 I;  4LF7 I;  2VES A;  4PRV A;  1XMQ I;  1MX0 A;  4MYU A;  4DU7 A;  4LF9 E;  2OI2 A;  2PO0 A;  3J81 C;  1I94 E;  4B3S E;  1N32 I;  4B3M I;  4LF7 E;  1EA6 A;  4WUB A;  3CDI A;  1FWK A;  1N36 E;  4LFC E;  1N32 E;  1KTV A;  4B3M E;  4LF4 I;  1Z5A A;  4DV3 I;  5DRQ A;  3B78 A;  3P3E A;  4JI6 I;  2AE8 A;  3UHM A;  2JEB A;  4DV3 E;  1HNZ E;  5JEA E;  2PO1 B;  3QT7 A;  4JI7 I;  1XMO I;  1OJ4 A;  5BR8 I;  4GQU A;  4JI6 E;  2V2Q A;  1B62 A;  4JI7 E;  1XMO E;  2HKJ A;  5A2Q Q;  2CGE A;  5BR8 E;  4NXN I;  4DXL A;  4DV1 E;  3J7A M;  4QNJ A;  2VQE E;  3DD6 A;  2UUB E;  2IOQ A;  1A6F A;  5C0X E;  1Z0E A;  2DEI A;  4HAC B;  1S16 A;  3J81 Q;  2NN6 F;  3M7N G;  2PO2 A;  5DRO A;  5K36 F;  1H73 A;  4UTG A;  4IFD B;  2O1T A;  4LCF A;  1Y4S A;  4IZK B;  4JI4 I;  1RHY A;  2A2C A;  5LMN I;  1XNQ I;  3ZZ0 A;  4DR5 E;  4ISA A;  2NN6 A;  4DUY I;  4IFD E;  2Z5C B;  1N33 I;  3T1H E;  4JI4 E;  4I3H A;  2O1U A;  1Z0T A;  2V8P A;  2BA1 G;  4P7A A;  1DAR A;  3PYF A;  4JI3 E;  1Z0V A;  4LFB E;  2C38 B;  1E3P A;  3KRN A;  4YHH I;  4JYA I;  2NN6 C;  2PNZ A;  1E3H A;  1H74 A;  2LJP A;  5EL9 A;  4DV5 I;  2BR2 B;  4JI5 I;  5K36 D;  4OX9 I;  2E5L I;  1VIS A;  4MU3 A;  1Y4U A;  2UUC I;  1FWL A;  4LCH A;  3JAM Q;  2O3Z A;  4OO1 E;  1Y6Z A;  1KKH A;  4AIM A;  4DR3 E;  1IBM I;  4DR7 I;  3WU6 A;  2C39 B;  3U1K A;  1WUU A;  1H72 C;  3ZZT A;  4Z7Y A;  4LF8 I;  4MU4 A;  3HUL A;  1USU A;  2IOP A;  4GKK I;  2J7K A;  4MU1 A;  2PO1 A;  1FJG E;  4X62 E;  2V2Z A;  2HKE A;  5DNL A;  2HHH I;  1HR0 E;  2WP8 A;  5JEA D;  1Z5C A;  4JI1 E;  2VQF E;  4OKG A;  4MYT A;  3J7A G;  3P06 A;  1I94 I;  1ZM3 A;  4N3O A;  3HJC A;  3WU3 A;  3K1J A;  4IZJ B;  2HHH E;  2JEA A;  4LFC I;  2PNM A;  1N36 I;  1UDS A;  4IS9 A;  3P3C A;  4XTJ A;  4HYM A;  5ELW A;  4FW4 A;  4JI0 E;  2O1W A;  1IBK E;  4M1K A;  2UUA E;  5DNX A;  1ELO A;  4FW7 A;  3P76 A;  2VF3 A;  1FI4 A;  4NBQ A;  1HNX E;  2JT2 A;  4DU8 A;  5JEA B;  1HNZ I;  4BA1 B;  4IZK A;  1H7S A;  3NZK A;  2HK3 A;  2E1R A;  4JV5 I;  2GO4 A;  1YHC A;  2F4V E;  5IT9 C;  1S4E A;  1B63 A;  1ZXM A;  2F1D A;  4KHP E;  4JV5 E;  3PS1 A;  4DV1 I;  3ZKD A;  2VQE I;  4IFD D;  2UUB I;  3PYE A;  3LNU A;  2WNR B;  2C38 A;  5C0X B;  4USM A;  1XXE A;  4QNK A;  4USK A;  2JE6 A;  1BKN A;  4BA2 B;  1XHK A;  1P42 A;  4PU9 A;  5FLX C;  3Q1Q A;  5LL6 R;  4P52 A;  3B8H A;  3LTO A;  4JI8 E;  1H7U A;  4EMD A;  3F0N A;  4DR5 I;  1ZM2 A;  4WUC A;  1KVK A;  3T1H I;  4LPF A;  4LF6 I;  3OTO I;  4DR4 E;  1ZM4 A;  4ED4 A;  4JI3 I;  5EKW A;  2BM1 A;  1ZM9 A;  3PYG A;  4ZVI A;  4NXM E;  2BA0 D;  4DV6 E;  2UXB E;  4LF6 E;  3OTO E;  3PYD A;  4LFB I;  4MDT A;  5K36 A;  4DV2 I;  5IT9 Q;  4DV4 E;  4FWD A;  1PKP A; 
#chains in the Genus database with same CATH homology
 5EKW A;  5DNL A;  4QNJ A;  5EL9 A;  2AE8 A;  4MU4 A;  2F1D A;  4GQU A;  1RHY A;  4QNK A;  4LPF A;  5ELW A;  4LOM A;  4MU3 A;  4MU0 A;  4MU1 A;  5DNX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4LOMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN