4LPFA

Crystal structure of mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
Total Genus 60
204060801001201401601800102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
190
structure length
190
Chain Sequence
SRRARIERRTRESDIVIELDLDGTGQVAVDTGVPFYDHMLTALGSHASFDLTVRATGDVEIEAHHTIEDTAIALGTALGQALGDKRGIRRFGDAFIPMDETLAHAAVDLSGRPYCVHTGEPDHLQHTTIAGSSVPYHTVINRHVFESLAANARIALHVRVLYGRDPHHITEAQYKAVARALRQAVEPDPR
2040608010012014016018015010050
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (22-29)S1 (12-18)TI2 (67-70)TI1 (19-22)AH1 (43-56)TIV1 (29-32)TIV2 (32-35)S3 (36-39)AH4 (175-194)S4 (59-66)TIV3 (68-71)AH2 (72-91)TII'1 (91-94)S5 (100-107)TII1 (94-97)O1 (98-100)AH3 (148-161)TII'2 (107-110)TI3 (117-120)S10 (164-171)S6 (110-117)S7 (123-127)S8 (137-138)S9 (145-146)Updating...
connected with : NaN
molecule tags Lyase
source organism Mycobacterium tuberculosis h37rv
publication title Crystal structures of the native, substrate- bound and inhibited forms of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase
rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase
total genus 60
structure length 190
sequence length 190
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-07-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4lpfA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4lpfA02
2F1DA 4MU3A 4MU0A 4MU4A 5DNLA 5EL9A 5EKWA 4LOMA 2AE8A 5ELWA 4QNJA 4QNKA 5DNXA 4GQUA 4MU1A 4LPFA 1RHYA
chains in the Genus database with same CATH superfamily
4AQYI 2Q2EB 5K36D 4MDTA 1N34E 2UUCI 1HR0I 1OYPA 4IFDD 2BA0G 3QT5A 4GKKE 4LFCI 4OZEA 1Z0TA 5IWAI 4JI2I 1ZM9A 4FW9A 4DV7I 2HHHI 2UXBI 2R3VA 2XEXA 2JEAA 3JAMQ 4LF4I 2UU9I 4JYAI 5FLXQ 2DEIA 2IESA 2BA1D 2R42A 4IZKB 3ZKBA 1IBKI 3WU4A 3M7NG 3GLLA 5C0XC 4X62I 5C0XA 4GQUA 2O1UA 3GMEA 4OO1D 2AJ4A 2PNZB 3M85D 2ZM6E 4RPFA 4X65E 2BM0A 1R6MA 3ZKDA 1E3PA 1N32E 1EA6A 4DR3I 2E1RA 1FI4A 1HNXI 4B3SI 5A2QC 2CGEA 4LFBI 3OTOI 4JI0E 4JI5E 3PYGA 2BR2B 2NN6C 3KRNA 2NN6A 1MX0A 2JE6B 5BR8I 2O1WA 3B82A 3ZZTA 1MU5A 4Z7YA 1I94E 2HKJA 1VI7A 4PRXA 4DUZE 1HNWI 1FWKA 2VQFI 1HK7A 3Q6MA 4MU4A 1FJGI 4DUYE 1FWLA 5GMEA 4IZJB 4DU7A 1Z0EA 4DV5I 1XNRI 1P42A 2GS8A 4EMDA 4JI4E 2C39A 4WUDA 2UXDI 4U3BA 1Z59A 1IBME 4DPXA 2UXCI 4ZVIA 1Y4UA 1ZM3A 4JI6E 4J3DA 3V2UC 1J5EE 2ZBKB 1UDSA 2NN6F 2PO0A 2ZITA 4MU3A 2X36A 1Z0GA 4AM3A 2JEAB 1H73A 5A2QQ 4R1FA 2C37A 2O3ZA 4LF7I 3WU5A 1USVA 4DR2I 4LF5E 4JI8E 3T1YE 2VQEI 4Z7CA 3K17A 5C0XB 3DD6A 2F4VE 1VISA 4MYTA 2GO4A 3ZM7A 4YY3I 1XHKA 2CZ9A 1MG7A 4DV3E 1XMQI 1UDOA 4LCGA 4MYUA 2V8PA 3U1KA 3WU6A 1RREA 1NHHA 4YHHE 3J7AM 4LF9E 2NN6B 4OX9I 4DV6E 1UDNA 1N33I 1R6LA 3M6AA 2GO3A 1K47A 2BM1A 2HK2A 2E5LI 2C39B 4LF6E 2NPFA 4BA1A 5LMUE 4P7AA 4FW6A 1OJ4A 1Z5CA 1B62A 4DV2I 2PO0B 3P76A 4ED4A 4OKGA 5L3JA 4JV5I 4B3RI 2C37B 2VESA 2Z5BA 4DR7E 4JI3E 4X66E 4LPFA 2X7IA 1H7SA 4DPYA 4FN5A 3Q6NA 3K85A 4X64E 4JI1E 1N34I 4NXME 1ZM4A 4KHPE 4LF8I 4GKKI 5K36C 4DPTA 1Y6ZA 5K36A 3LTOA 4DR4E 4DV1E 5EKWA 4IFDC 4HXZA 4IFDA 1YHCA 3P3GA 4JG4A 4DV4E 3GONA 4M1KA 1XMOE 4UT4A 2HKEA 4DXLA 4DPWA 4GKJE 2ZM6I 4X65I 4MU0A 4P52A 4LOMA 2HFUA 5JEAC 5JEAA 1N32I 4DR5E 2C38A 1A6FA 4OO1C 2V2QA 4OO1A 2Z5EA 2A2DA 5K36F 5C0XF 4BA1B 1IBLE 4MQYA 4JI5I 2F1DA 2UUAE 1XNRE 3GCMA 4HYMA 1ZXMA 4PRVA 2UUBE 3LNUA 4U3DA 3HULA 3D4JA 4URLA 3Q1QA 1I94I 2Z5BB 1N0UA 4UTGA 4B3TE 3CWVA 4DUZI 4DR1E 3K1JA 3PRYA 1PIEA 5EL9A 4DUYI 4JI7E 1D6TA 4JI4I 5JEAF 4K0KE 2NN6E 2LJPA 4OO1F 5ELWA 1IBMI 4NXNE 5K36B 2IERA 5LMNE 5DNLA 4JI6I 3T1HE 2AE8A 4USKA 4BA2A 1J5EI 4IFDB 2A2CA 3QT7A 5DROA 1H7UA 1WUUA 3PYDA 3J81C 4B3ME 1XNQE 3LPSA 4LFAE 4LF5I 4LCFA 3PYFA 4JI8I 1U2RA 1N0VC 2F4VI 3J80C 4LCHA 2IOQA 2WNRA 5JEAB 1N36E 2PNMA 2C38B 4OO1B 5LL6R 3L7ZA 4DV3I 2JT2A 4DU8A 4QNJA 1FKAE 3B78A 4FW3A 1HNZE 3B4TA 1ZM2A 4DV0E 4FW5A 1Z0CA 4YHHI 2CG9A 4LF9I 1NHIA 4IZJD 1ELOA 4DV6I 2DEJA 4QNKA 1EI1A 1QZRA 1RHYA 5DRQA 4AQYE 1KTVA 4HACA 3J81Q 4DR6I 4KQVA 4WUBA 1Y60A 2UUCE 1HR0E 4USMA 4ISAA 2J7KA 2BA1G 1OYRA 2WP8A 3P06A 3PS2A 2JEBA 4LFCE 4LF6I 5IWAE 1H74A 5LMUI 4JI2E 1OYSA 4DV7E 2HHHE 5GMDA 1Y5YA 2UXBE 4BA2B 2PNLA 5DRPA 3M85G 3H4LA 1YH8A 5C0XD 2UU9E 4LF4E 1PKPA 4JYAE 1Z5BA 2V2VA 4LF8E 1IBKE 4N3OA 1KIJA 4XTJA 2V34A 1PVGA 1S4EA 4X62E 4DR7I 4FWGA 4JI3I 4X66I 4FW4A 3P3CA 1B63A 2BA0D 3QT6A 4X64I 4DR3E 4JI1I 2WNRB 1BKNA 4NXMI 1H72C 2NN6D 2OI2A 4KHPI 4B3SE 2PO2A 1HNXE 3L7ZB 4LFBE 3ZZUA 3OTOE 4WUCA 4DR4I 5JEAD 4DV1I 4I3HA 2O1TA 5BR8E 2HFSA 4DV4I 3M7ND 3HKMA 1XMOI 1HNWE 2V2ZA 2VQFE 4IFDF 4JI0I 1FJGE 2Z5CA 5K36E 4DV5E 5C0XE 4AIMA 4HACB 3CDJA 4GKJI 3B8HA 4IFDE 1FNMA 3PYEA 1NHJA 2UXDE 4DR5I 2WP8B 2JEBB 4FW7A 2UXCE 3U1YA 1IBLI 1Z0VA 2PO1A 2VF3A 2UUAI 2WW4A 3PS3A 2UUBI 5DRRA 4LF7E 1USUA 1Z5AA 4DR2E 5JEAE 1E3HA 4NBQA 4HY1A 2VQEE 4AIDA 4OO1E 4B3TI 3V5RA 4DR1I 2EFGA 2HK3A 5FWKA 3J7AG 1UEKA 4JI7I 4YY3E 4K0KI 1XMQE 5IT9C 3PS1A 3HJCA 3T1YI 2PO2B 3CDIA 1UDQA 4NXNI 5LMNI 3T1HI 1RR9A 2GQ0A 4OX9E 1KVKA 1N33E 4IZKA 2BV3A 4B3MI 2J65A 4IS9A 1XNQI 4LFAI 4FWHA 3F0NA 2Z5CB 2PNZA 5DNXA 1DARA 2E5LE 1S16A 3NZKA 2IOPA 1Y4SA 1N36I 3P3EA 3UHMA 4PU9A 3JAMC 4DPUA 5FLXC 1Z0WA 1KKHA 3H1CA 4DV2E 4MU1A 1HNZI 2PO1B 4DV0I 2BR2A 2CVEA 5IT9Q 1ZXNA 2JE6A 4DR6E 4JV5E 1Z0BA 2O1VA 4B3RE 4FWDA 1XXEA 3ZZ0A 3QT8A 3J80Q 1NZ0A 3WU3A 4IZJA
chains in the Genus database with same CATH topology
2F1DA 4MU3A 4MU0A 4MU4A 5DNLA 5EL9A 5EKWA 4LOMA 2AE8A 5ELWA 4QNJA 4QNKA 5DNXA 4GQUA 4MU1A 4LPFA 1RHYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1D A;  4MU3 A;  4MU0 A;  4MU4 A;  5DNL A;  5EL9 A;  5EKW A;  4LOM A;  2AE8 A;  5ELW A;  4QNJ A;  4QNK A;  5DNX A;  4GQU A;  4MU1 A;  4LPF A;  1RHY A; 
#chains in the Genus database with same CATH topology
 4AQY I;  2Q2E B;  5K36 D;  4MDT A;  1N34 E;  2UUC I;  1HR0 I;  1OYP A;  4IFD D;  2BA0 G;  3QT5 A;  4GKK E;  4LFC I;  4OZE A;  1Z0T A;  5IWA I;  4JI2 I;  1ZM9 A;  4FW9 A;  4DV7 I;  2HHH I;  2UXB I;  2R3V A;  2XEX A;  2JEA A;  3JAM Q;  4LF4 I;  2UU9 I;  4JYA I;  5FLX Q;  2DEI A;  2IES A;  2BA1 D;  2R42 A;  4IZK B;  3ZKB A;  1IBK I;  3WU4 A;  3M7N G;  3GLL A;  5C0X C;  4X62 I;  5C0X A;  4GQU A;  2O1U A;  3GME A;  4OO1 D;  2AJ4 A;  2PNZ B;  3M85 D;  2ZM6 E;  4RPF A;  4X65 E;  2BM0 A;  1R6M A;  3ZKD A;  1E3P A;  1N32 E;  1EA6 A;  4DR3 I;  2E1R A;  1FI4 A;  1HNX I;  4B3S I;  5A2Q C;  2CGE A;  4LFB I;  3OTO I;  4JI0 E;  4JI5 E;  3PYG A;  2BR2 B;  2NN6 C;  3KRN A;  2NN6 A;  1MX0 A;  2JE6 B;  5BR8 I;  2O1W A;  3B82 A;  3ZZT A;  1MU5 A;  4Z7Y A;  1I94 E;  2HKJ A;  1VI7 A;  4PRX A;  4DUZ E;  1HNW I;  1FWK A;  2VQF I;  1HK7 A;  3Q6M A;  4MU4 A;  1FJG I;  4DUY E;  1FWL A;  5GME A;  4IZJ B;  4DU7 A;  1Z0E A;  4DV5 I;  1XNR I;  1P42 A;  2GS8 A;  4EMD A;  4JI4 E;  2C39 A;  4WUD A;  2UXD I;  4U3B A;  1Z59 A;  1IBM E;  4DPX A;  2UXC I;  4ZVI A;  1Y4U A;  1ZM3 A;  4JI6 E;  4J3D A;  3V2U C;  1J5E E;  2ZBK B;  1UDS A;  2NN6 F;  2PO0 A;  2ZIT A;  4MU3 A;  2X36 A;  1Z0G A;  4AM3 A;  2JEA B;  1H73 A;  5A2Q Q;  4R1F A;  2C37 A;  2O3Z A;  4LF7 I;  3WU5 A;  1USV A;  4DR2 I;  4LF5 E;  4JI8 E;  3T1Y E;  2VQE I;  4Z7C A;  3K17 A;  5C0X B;  3DD6 A;  2F4V E;  1VIS A;  4MYT A;  2GO4 A;  3ZM7 A;  4YY3 I;  1XHK A;  2CZ9 A;  1MG7 A;  4DV3 E;  1XMQ I;  1UDO A;  4LCG A;  4MYU A;  2V8P A;  3U1K A;  3WU6 A;  1RRE A;  1NHH A;  4YHH E;  3J7A M;  4LF9 E;  2NN6 B;  4OX9 I;  4DV6 E;  1UDN A;  1N33 I;  1R6L A;  3M6A A;  2GO3 A;  1K47 A;  2BM1 A;  2HK2 A;  2E5L I;  2C39 B;  4LF6 E;  2NPF A;  4BA1 A;  5LMU E;  4P7A A;  4FW6 A;  1OJ4 A;  1Z5C A;  1B62 A;  4DV2 I;  2PO0 B;  3P76 A;  4ED4 A;  4OKG A;  5L3J A;  4JV5 I;  4B3R I;  2C37 B;  2VES A;  2Z5B A;  4DR7 E;  4JI3 E;  4X66 E;  4LPF A;  2X7I A;  1H7S A;  4DPY A;  4FN5 A;  3Q6N A;  3K85 A;  4X64 E;  4JI1 E;  1N34 I;  4NXM E;  1ZM4 A;  4KHP E;  4LF8 I;  4GKK I;  5K36 C;  4DPT A;  1Y6Z A;  5K36 A;  3LTO A;  4DR4 E;  4DV1 E;  5EKW A;  4IFD C;  4HXZ A;  4IFD A;  1YHC A;  3P3G A;  4JG4 A;  4DV4 E;  3GON A;  4M1K A;  1XMO E;  4UT4 A;  2HKE A;  4DXL A;  4DPW A;  4GKJ E;  2ZM6 I;  4X65 I;  4MU0 A;  4P52 A;  4LOM A;  2HFU A;  5JEA C;  5JEA A;  1N32 I;  4DR5 E;  2C38 A;  1A6F A;  4OO1 C;  2V2Q A;  4OO1 A;  2Z5E A;  2A2D A;  5K36 F;  5C0X F;  4BA1 B;  1IBL E;  4MQY A;  4JI5 I;  2F1D A;  2UUA E;  1XNR E;  3GCM A;  4HYM A;  1ZXM A;  4PRV A;  2UUB E;  3LNU A;  4U3D A;  3HUL A;  3D4J A;  4URL A;  3Q1Q A;  1I94 I;  2Z5B B;  1N0U A;  4UTG A;  4B3T E;  3CWV A;  4DUZ I;  4DR1 E;  3K1J A;  3PRY A;  1PIE A;  5EL9 A;  4DUY I;  4JI7 E;  1D6T A;  4JI4 I;  5JEA F;  4K0K E;  2NN6 E;  2LJP A;  4OO1 F;  5ELW A;  1IBM I;  4NXN E;  5K36 B;  2IER A;  5LMN E;  5DNL A;  4JI6 I;  3T1H E;  2AE8 A;  4USK A;  4BA2 A;  1J5E I;  4IFD B;  2A2C A;  3QT7 A;  5DRO A;  1H7U A;  1WUU A;  3PYD A;  3J81 C;  4B3M E;  1XNQ E;  3LPS A;  4LFA E;  4LF5 I;  4LCF A;  3PYF A;  4JI8 I;  1U2R A;  1N0V C;  2F4V I;  3J80 C;  4LCH A;  2IOQ A;  2WNR A;  5JEA B;  1N36 E;  2PNM A;  2C38 B;  4OO1 B;  5LL6 R;  3L7Z A;  4DV3 I;  2JT2 A;  4DU8 A;  4QNJ A;  1FKA E;  3B78 A;  4FW3 A;  1HNZ E;  3B4T A;  1ZM2 A;  4DV0 E;  4FW5 A;  1Z0C A;  4YHH I;  2CG9 A;  4LF9 I;  1NHI A;  4IZJ D;  1ELO A;  4DV6 I;  2DEJ A;  4QNK A;  1EI1 A;  1QZR A;  1RHY A;  5DRQ A;  4AQY E;  1KTV A;  4HAC A;  3J81 Q;  4DR6 I;  4KQV A;  4WUB A;  1Y60 A;  2UUC E;  1HR0 E;  4USM A;  4ISA A;  2J7K A;  2BA1 G;  1OYR A;  2WP8 A;  3P06 A;  3PS2 A;  2JEB A;  4LFC E;  4LF6 I;  5IWA E;  1H74 A;  5LMU I;  4JI2 E;  1OYS A;  4DV7 E;  2HHH E;  5GMD A;  1Y5Y A;  2UXB E;  4BA2 B;  2PNL A;  5DRP A;  3M85 G;  3H4L A;  1YH8 A;  5C0X D;  2UU9 E;  4LF4 E;  1PKP A;  4JYA E;  1Z5B A;  2V2V A;  4LF8 E;  1IBK E;  4N3O A;  1KIJ A;  4XTJ A;  2V34 A;  1PVG A;  1S4E A;  4X62 E;  4DR7 I;  4FWG A;  4JI3 I;  4X66 I;  4FW4 A;  3P3C A;  1B63 A;  2BA0 D;  3QT6 A;  4X64 I;  4DR3 E;  4JI1 I;  2WNR B;  1BKN A;  4NXM I;  1H72 C;  2NN6 D;  2OI2 A;  4KHP I;  4B3S E;  2PO2 A;  1HNX E;  3L7Z B;  4LFB E;  3ZZU A;  3OTO E;  4WUC A;  4DR4 I;  5JEA D;  4DV1 I;  4I3H A;  2O1T A;  5BR8 E;  2HFS A;  4DV4 I;  3M7N D;  3HKM A;  1XMO I;  1HNW E;  2V2Z A;  2VQF E;  4IFD F;  4JI0 I;  1FJG E;  2Z5C A;  5K36 E;  4DV5 E;  5C0X E;  4AIM A;  4HAC B;  3CDJ A;  4GKJ I;  3B8H A;  4IFD E;  1FNM A;  3PYE A;  1NHJ A;  2UXD E;  4DR5 I;  2WP8 B;  2JEB B;  4FW7 A;  2UXC E;  3U1Y A;  1IBL I;  1Z0V A;  2PO1 A;  2VF3 A;  2UUA I;  2WW4 A;  3PS3 A;  2UUB I;  5DRR A;  4LF7 E;  1USU A;  1Z5A A;  4DR2 E;  5JEA E;  1E3H A;  4NBQ A;  4HY1 A;  2VQE E;  4AID A;  4OO1 E;  4B3T I;  3V5R A;  4DR1 I;  2EFG A;  2HK3 A;  5FWK A;  3J7A G;  1UEK A;  4JI7 I;  4YY3 E;  4K0K I;  1XMQ E;  5IT9 C;  3PS1 A;  3HJC A;  3T1Y I;  2PO2 B;  3CDI A;  1UDQ A;  4NXN I;  5LMN I;  3T1H I;  1RR9 A;  2GQ0 A;  4OX9 E;  1KVK A;  1N33 E;  4IZK A;  2BV3 A;  4B3M I;  2J65 A;  4IS9 A;  1XNQ I;  4LFA I;  4FWH A;  3F0N A;  2Z5C B;  2PNZ A;  5DNX A;  1DAR A;  2E5L E;  1S16 A;  3NZK A;  2IOP A;  1Y4S A;  1N36 I;  3P3E A;  3UHM A;  4PU9 A;  3JAM C;  4DPU A;  5FLX C;  1Z0W A;  1KKH A;  3H1C A;  4DV2 E;  4MU1 A;  1HNZ I;  2PO1 B;  4DV0 I;  2BR2 A;  2CVE A;  5IT9 Q;  1ZXN A;  2JE6 A;  4DR6 E;  4JV5 E;  1Z0B A;  2O1V A;  4B3R E;  4FWD A;  1XXE A;  3ZZ0 A;  3QT8 A;  3J80 Q;  1NZ0 A;  3WU3 A;  4IZJ A; 
#chains in the Genus database with same CATH homology
 2F1D A;  4MU3 A;  4MU0 A;  4MU4 A;  5DNL A;  5EL9 A;  5EKW A;  4LOM A;  2AE8 A;  5ELW A;  4QNJ A;  4QNK A;  5DNX A;  4GQU A;  4MU1 A;  4LPF A;  1RHY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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