4MU1 | Genus

Total Genus 54

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	185
structure length	184
Chain Sequence	SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Arabidopsis thaliana
publication title	Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination. pubmed doi rcsb
molecule keywords	Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus	54
structure length	184
sequence length	185
ec nomenclature	ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date	2013-09-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00475	IGPD	Imidazoleglycerol-phosphate dehydratase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.230.40	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	Imidazole glycerol phosphate dehydratase; domain 1	4mu1A01
3.30.230.40	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	Imidazole glycerol phosphate dehydratase; domain 1	4mu1A02

5ELWA 5DNLA 4GQUA 4QNKA 5EKWA 1RHYA 4QNJA 5DNXA 4LOMA 4MU4A 4MU3A 2F1DA 4LPFA 4MU0A 5EL9A 2AE8A 4MU1A
chains in the Genus database with same CATH superfamily

2CVEA 4LFAE 2PO1A 2IOPA 3CWVA 3M85G 4WUDA 4DR1I 1XHKA 2F4VI 4BA2B 4LF5E 2UXDE 4DR4E 2Q2EB 2Z5CB 2DEJA 3QT5A 5JEAC 1BKNA 4IZJD 3J7AM 4MDTA 4DR7I 4JI7E 3PS2A 2JE6A 4ISAA 4JI3E 3OTOE 2C38B 5K36C 2UU9E 5K36D 2PNLA 4DR6E 4ED4A 1KIJA 1KTVA 2EFGA 3T1HE 3PYDA 3M85D 2ZM6E 3B4TA 2BR2A 1ZXMA 2NN6A 4DR3I 5FLXQ 4OX9I 5DNLA 3D4JA 3J81C 4P52A 1FKAE 4LOMA 1FJGI 2PO2B 4LPFA 4DPTA 1Z5AA 4JYAI 3H4LA 5JEAE 4UT4A 3HJCA 4IFDB 1B63A 1Y6ZA 2AE8A 2UXCI 4YHHI 4DV5I 4J3DA 2UXBE 2PO0B 4DR2I 1Y60A 2V2QA 4ZVIA 5FWKA 3B8HA 4YY3E 5C0XB 3PYGA 1E3PA 1N32E 3QT8A 4R1FA 1MG7A 1HK7A 1PKPA 1PVGA 1XNQI 2F4VE 2E1RA 4DV1E 2LJPA 2VQFI 4GKJI 4AIMA 3L7ZA 4DUYI 1N33E 4PRVA 4K0KE 2F1DA 2JT2A 4FWGA 4DR7E 4OKGA 1FNMA 2A2DA 4M1KA 1E3HA 4DV3I 2HKEA 4WUBA 3UHMA 2C39A 4JV5I 2WNRA 3M6AA 2V8PA 4AQYI 2GO3A 4FW3A 1OYRA 4JI2E 2IOQA 3M7NG 4X62I 2WP8B 2UUCI 4BA1B 4B3TI 2NN6E 2UUBI 4X66I 4DUZI 4OX9E 2V2VA 5A2QC 1RREA 4JI4I 1FJGE 3ZKBA 2A2CA 4DPXA 4LCHA 2VQEE 1Z0EA 2X7IA 3K17A 1Z5BA 4LCGA 3PYEA 1RHYA 3J80Q 4DR2E 1XNRI 4IFDF 1XMOI 1QZRA 2O3ZA 4IZJA 4B3RE 1H74A 4HXZA 4I3HA 4MU3A 4IZKA 1USVA 2UUAI 4JI6I 4Z7CA 4LF8I 1Z0BA 1XNQE 2HK2A 5C0XF 5IT9C 1H7UA 2V2ZA 2VQFE 1N34E 5K36A 4DV6E 1I94I 2JEAB 1WUUA 4LFBI 3PS1A 2NPFA 4JI5I 1S16A 3U1YA 1HNXI 4DV2E 1N0VC 3L7ZB 1HNWI 4NXNI 4NBQA 2VESA 2CZ9A 4FW4A 4JV5E 2J7KA 4DR5E 1IBME 3ZZUA 2HHHE 1MX0A 4OO1C 4IS9A 3V2UC 4OO1D 4X62E 5LMNE 1KKHA 4IFDC 4IFDD 1PIEA 1H72C 2IERA 4JI1I 4B3TE 3Q1QA 2UUBE 4DUZE 4U3DA 4JI0E 4XTJA 3ZKDA 3J81Q 3JAMQ 1XMQI 1K47A 5C0XD 5BR8I 2E5LE 1NHHA 1YHCA 1Z0WA 5DRQA 5EL9A 3H1CA 1NZ0A 1XXEA 1XMOE 1FWLA 2Z5BA 1YH8A 1EI1A 4NXMI 4X65I 4FWHA 1Y4SA 2UUAE 4JI6E 4HACB 2HKJA 5JEAB 4LF6I 5GMEA 4B3SI 4OO1E 1UDQA 5K36E 4KHPE 4DV7I 4JG4A 2CG9A 3F0NA 1IBKI 2PNZA 4DR1E 5FLXC 4DU7A 4LF4I 2WW4A 1KVKA 2C37A 4DPWA 2GS8A 4B3MI 1HNWE 2PO1B 3LPSA 4UTGA 4FW5A 5IWAI 4HY1A 2X36A 1NHJA 1Z0GA 3GMEA 3Q6NA 4AIDA 4DV4I 4USMA 2XEXA 4BA2A 3DD6A 2OI2A 3Q6MA 2R42A 2Z5CA 1RR9A 4GKKI 2HHHI 2JE6B 1OYPA 2AJ4A 1ZM3A 2GQ0A 5DROA 1XMQE 5A2QQ 4DR3E 1A6FA 4X64I 4MQYA 2BA1G 2UXDI 4DR4I 3WU3A 2HK3A 4FW6A 3K1JA 2C38A 1R6MA 4JYAE 4DPUA 2BR2B 3WU5A 3B82A 3P3GA 2NN6B 4DV0I 3P76A 4JI7I 4NXME 4JI3I 2UXCE 5DRPA 4YHHE 4DV5E 3OTOI 3LTOA 4LF6E 4URLA 4PU9A 2V34A 2ZBKB 3T1HI 3M7ND 2PO2A 5JEAF 3P3CA 2ZM6I 1ZM4A 4OO1A 1HNZI 4LF4E 4KQVA 4IFDA 1DARA 4GKJE 4DUYE 3CDIA 4USKA 4LF9I 2PNMA 1D6TA 4OZEA 1H73A 1UDSA 4DV3E 3HKMA 2UXBI 1N36I 2IESA 4MYUA 2O1VA 1EA6A 1ZXNA 4YY3I 5DRRA 3K85A 2VF3A 3NZKA 4GKKE 4Z7YA 3GCMA 4AQYE 5LL6R 5EKWA 4MU4A 4DV1I 4WUCA 2UUCE 4X64E 4X66E 2C39B 3CDJA 4JI8I 1HR0I 2WNRB 4JI4E 1N33I 5JEAD 1Y4UA 4DPYA 4K0KI 5C0XC 4FWDA 4LF7I 1Y5YA 4DV0E 4HYMA 1Z0TA 2O1WA 2BM1A 4MU0A 3PRYA 4U3BA 1J5EI 3WU6A 1H7SA 3T1YI 2NN6F 2ZITA 1XNRE 1FI4A 2WP8A 5GMDA 4BA1A 1Z59A 2JEBA 4LF8E 4LFCI 5DNXA 1IBLI 4JI2I 4MU1A 1FWKA 1HNZE 1OJ4A 4P7AA 1I94E 4IZJB 4LFBE 4IFDE 2BA0G 5LMUI 4JI5E 3JAMC 4IZKB 4LF9E 4GQUA 1ELOA 4AM3A 2HFUA 2J65A 1HNXE 4OO1B 1P42A 2VQEI 2O1TA 4FW7A 5K36B 3GONA 5C0XE 3J7AG 1Z0CA 4NXNE 1Z0VA 1U2RA 1VISA 1VI7A 1N36E 1B62A 2JEAA 4B3RI 3ZM7A 3HULA 1NHIA 2NN6C 1Z5CA 2NN6D 3V5RA 4JI1E 1N34I 2BA0D 4DV6I 4PRXA 1HR0E 4JI8E 4LCFA 3PS3A 1R6LA 4DU8A 2O1UA 4FN5A 4LFAI 4MYTA 3LNUA 4LF7E 5BR8E 4LF5I 4DV2I 1J5EE 1MU5A 3T1YE 1USUA 5ELWA 1UEKA 4RPFA 1ZM2A 4X65E 4DR5I 1IBMI 4FW9A 3QT6A 1UDOA 4LFCE 1IBLE 1ZM9A 2BV3A 3P06A 5LMNI 2UU9I 4B3SE 4DR6I 2R3VA 5L3JA 2HFSA 4DV7E 1UDNA 2Z5BB 5IT9Q 4JI0I 5LMUE 1IBKE 2JEBB 3WU4A 2BA1D 1OYSA 2E5LI 1S4EA 3B78A 3P3EA 2PO0A 4DXLA 4B3ME 4OO1F 4HACA 4N3OA 3U1KA 5JEAA 2PNZB 5K36F 2Z5EA 3PYFA 2CGEA 5C0XA 3ZZTA 4EMDA 3QT7A 3J80C 4QNKA 2C37B 5IWAE 4QNJA 4DV4E 3ZZ0A 2GO4A 2DEIA 2BM0A 1N0UA 3KRNA 4KHPI 3GLLA 1N32I
chains in the Genus database with same CATH topology

5ELWA 5DNLA 4GQUA 4QNKA 5EKWA 1RHYA 4QNJA 5DNXA 4LOMA 4MU4A 4MU3A 2F1DA 4LPFA 4MU0A 5EL9A 2AE8A 4MU1A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5ELW A;  5DNL A;  4GQU A;  4QNK A;  5EKW A;  1RHY A;  4QNJ A;  5DNX A;  4LOM A;  4MU4 A;  4MU3 A;  2F1D A;  4LPF A;  4MU0 A;  5EL9 A;  2AE8 A;  4MU1 A; 
#chains in the Genus database with same CATH topology
 2CVE A;  4LFA E;  2PO1 A;  2IOP A;  3CWV A;  3M85 G;  4WUD A;  4DR1 I;  1XHK A;  2F4V I;  4BA2 B;  4LF5 E;  2UXD E;  4DR4 E;  2Q2E B;  2Z5C B;  2DEJ A;  3QT5 A;  5JEA C;  1BKN A;  4IZJ D;  3J7A M;  4MDT A;  4DR7 I;  4JI7 E;  3PS2 A;  2JE6 A;  4ISA A;  4JI3 E;  3OTO E;  2C38 B;  5K36 C;  2UU9 E;  5K36 D;  2PNL A;  4DR6 E;  4ED4 A;  1KIJ A;  1KTV A;  2EFG A;  3T1H E;  3PYD A;  3M85 D;  2ZM6 E;  3B4T A;  2BR2 A;  1ZXM A;  2NN6 A;  4DR3 I;  5FLX Q;  4OX9 I;  5DNL A;  3D4J A;  3J81 C;  4P52 A;  1FKA E;  4LOM A;  1FJG I;  2PO2 B;  4LPF A;  4DPT A;  1Z5A A;  4JYA I;  3H4L A;  5JEA E;  4UT4 A;  3HJC A;  4IFD B;  1B63 A;  1Y6Z A;  2AE8 A;  2UXC I;  4YHH I;  4DV5 I;  4J3D A;  2UXB E;  2PO0 B;  4DR2 I;  1Y60 A;  2V2Q A;  4ZVI A;  5FWK A;  3B8H A;  4YY3 E;  5C0X B;  3PYG A;  1E3P A;  1N32 E;  3QT8 A;  4R1F A;  1MG7 A;  1HK7 A;  1PKP A;  1PVG A;  1XNQ I;  2F4V E;  2E1R A;  4DV1 E;  2LJP A;  2VQF I;  4GKJ I;  4AIM A;  3L7Z A;  4DUY I;  1N33 E;  4PRV A;  4K0K E;  2F1D A;  2JT2 A;  4FWG A;  4DR7 E;  4OKG A;  1FNM A;  2A2D A;  4M1K A;  1E3H A;  4DV3 I;  2HKE A;  4WUB A;  3UHM A;  2C39 A;  4JV5 I;  2WNR A;  3M6A A;  2V8P A;  4AQY I;  2GO3 A;  4FW3 A;  1OYR A;  4JI2 E;  2IOQ A;  3M7N G;  4X62 I;  2WP8 B;  2UUC I;  4BA1 B;  4B3T I;  2NN6 E;  2UUB I;  4X66 I;  4DUZ I;  4OX9 E;  2V2V A;  5A2Q C;  1RRE A;  4JI4 I;  1FJG E;  3ZKB A;  2A2C A;  4DPX A;  4LCH A;  2VQE E;  1Z0E A;  2X7I A;  3K17 A;  1Z5B A;  4LCG A;  3PYE A;  1RHY A;  3J80 Q;  4DR2 E;  1XNR I;  4IFD F;  1XMO I;  1QZR A;  2O3Z A;  4IZJ A;  4B3R E;  1H74 A;  4HXZ A;  4I3H A;  4MU3 A;  4IZK A;  1USV A;  2UUA I;  4JI6 I;  4Z7C A;  4LF8 I;  1Z0B A;  1XNQ E;  2HK2 A;  5C0X F;  5IT9 C;  1H7U A;  2V2Z A;  2VQF E;  1N34 E;  5K36 A;  4DV6 E;  1I94 I;  2JEA B;  1WUU A;  4LFB I;  3PS1 A;  2NPF A;  4JI5 I;  1S16 A;  3U1Y A;  1HNX I;  4DV2 E;  1N0V C;  3L7Z B;  1HNW I;  4NXN I;  4NBQ A;  2VES A;  2CZ9 A;  4FW4 A;  4JV5 E;  2J7K A;  4DR5 E;  1IBM E;  3ZZU A;  2HHH E;  1MX0 A;  4OO1 C;  4IS9 A;  3V2U C;  4OO1 D;  4X62 E;  5LMN E;  1KKH A;  4IFD C;  4IFD D;  1PIE A;  1H72 C;  2IER A;  4JI1 I;  4B3T E;  3Q1Q A;  2UUB E;  4DUZ E;  4U3D A;  4JI0 E;  4XTJ A;  3ZKD A;  3J81 Q;  3JAM Q;  1XMQ I;  1K47 A;  5C0X D;  5BR8 I;  2E5L E;  1NHH A;  1YHC A;  1Z0W A;  5DRQ A;  5EL9 A;  3H1C A;  1NZ0 A;  1XXE A;  1XMO E;  1FWL A;  2Z5B A;  1YH8 A;  1EI1 A;  4NXM I;  4X65 I;  4FWH A;  1Y4S A;  2UUA E;  4JI6 E;  4HAC B;  2HKJ A;  5JEA B;  4LF6 I;  5GME A;  4B3S I;  4OO1 E;  1UDQ A;  5K36 E;  4KHP E;  4DV7 I;  4JG4 A;  2CG9 A;  3F0N A;  1IBK I;  2PNZ A;  4DR1 E;  5FLX C;  4DU7 A;  4LF4 I;  2WW4 A;  1KVK A;  2C37 A;  4DPW A;  2GS8 A;  4B3M I;  1HNW E;  2PO1 B;  3LPS A;  4UTG A;  4FW5 A;  5IWA I;  4HY1 A;  2X36 A;  1NHJ A;  1Z0G A;  3GME A;  3Q6N A;  4AID A;  4DV4 I;  4USM A;  2XEX A;  4BA2 A;  3DD6 A;  2OI2 A;  3Q6M A;  2R42 A;  2Z5C A;  1RR9 A;  4GKK I;  2HHH I;  2JE6 B;  1OYP A;  2AJ4 A;  1ZM3 A;  2GQ0 A;  5DRO A;  1XMQ E;  5A2Q Q;  4DR3 E;  1A6F A;  4X64 I;  4MQY A;  2BA1 G;  2UXD I;  4DR4 I;  3WU3 A;  2HK3 A;  4FW6 A;  3K1J A;  2C38 A;  1R6M A;  4JYA E;  4DPU A;  2BR2 B;  3WU5 A;  3B82 A;  3P3G A;  2NN6 B;  4DV0 I;  3P76 A;  4JI7 I;  4NXM E;  4JI3 I;  2UXC E;  5DRP A;  4YHH E;  4DV5 E;  3OTO I;  3LTO A;  4LF6 E;  4URL A;  4PU9 A;  2V34 A;  2ZBK B;  3T1H I;  3M7N D;  2PO2 A;  5JEA F;  3P3C A;  2ZM6 I;  1ZM4 A;  4OO1 A;  1HNZ I;  4LF4 E;  4KQV A;  4IFD A;  1DAR A;  4GKJ E;  4DUY E;  3CDI A;  4USK A;  4LF9 I;  2PNM A;  1D6T A;  4OZE A;  1H73 A;  1UDS A;  4DV3 E;  3HKM A;  2UXB I;  1N36 I;  2IES A;  4MYU A;  2O1V A;  1EA6 A;  1ZXN A;  4YY3 I;  5DRR A;  3K85 A;  2VF3 A;  3NZK A;  4GKK E;  4Z7Y A;  3GCM A;  4AQY E;  5LL6 R;  5EKW A;  4MU4 A;  4DV1 I;  4WUC A;  2UUC E;  4X64 E;  4X66 E;  2C39 B;  3CDJ A;  4JI8 I;  1HR0 I;  2WNR B;  4JI4 E;  1N33 I;  5JEA D;  1Y4U A;  4DPY A;  4K0K I;  5C0X C;  4FWD A;  4LF7 I;  1Y5Y A;  4DV0 E;  4HYM A;  1Z0T A;  2O1W A;  2BM1 A;  4MU0 A;  3PRY A;  4U3B A;  1J5E I;  3WU6 A;  1H7S A;  3T1Y I;  2NN6 F;  2ZIT A;  1XNR E;  1FI4 A;  2WP8 A;  5GMD A;  4BA1 A;  1Z59 A;  2JEB A;  4LF8 E;  4LFC I;  5DNX A;  1IBL I;  4JI2 I;  4MU1 A;  1FWK A;  1HNZ E;  1OJ4 A;  4P7A A;  1I94 E;  4IZJ B;  4LFB E;  4IFD E;  2BA0 G;  5LMU I;  4JI5 E;  3JAM C;  4IZK B;  4LF9 E;  4GQU A;  1ELO A;  4AM3 A;  2HFU A;  2J65 A;  1HNX E;  4OO1 B;  1P42 A;  2VQE I;  2O1T A;  4FW7 A;  5K36 B;  3GON A;  5C0X E;  3J7A G;  1Z0C A;  4NXN E;  1Z0V A;  1U2R A;  1VIS A;  1VI7 A;  1N36 E;  1B62 A;  2JEA A;  4B3R I;  3ZM7 A;  3HUL A;  1NHI A;  2NN6 C;  1Z5C A;  2NN6 D;  3V5R A;  4JI1 E;  1N34 I;  2BA0 D;  4DV6 I;  4PRX A;  1HR0 E;  4JI8 E;  4LCF A;  3PS3 A;  1R6L A;  4DU8 A;  2O1U A;  4FN5 A;  4LFA I;  4MYT A;  3LNU A;  4LF7 E;  5BR8 E;  4LF5 I;  4DV2 I;  1J5E E;  1MU5 A;  3T1Y E;  1USU A;  5ELW A;  1UEK A;  4RPF A;  1ZM2 A;  4X65 E;  4DR5 I;  1IBM I;  4FW9 A;  3QT6 A;  1UDO A;  4LFC E;  1IBL E;  1ZM9 A;  2BV3 A;  3P06 A;  5LMN I;  2UU9 I;  4B3S E;  4DR6 I;  2R3V A;  5L3J A;  2HFS A;  4DV7 E;  1UDN A;  2Z5B B;  5IT9 Q;  4JI0 I;  5LMU E;  1IBK E;  2JEB B;  3WU4 A;  2BA1 D;  1OYS A;  2E5L I;  1S4E A;  3B78 A;  3P3E A;  2PO0 A;  4DXL A;  4B3M E;  4OO1 F;  4HAC A;  4N3O A;  3U1K A;  5JEA A;  2PNZ B;  5K36 F;  2Z5E A;  3PYF A;  2CGE A;  5C0X A;  3ZZT A;  4EMD A;  3QT7 A;  3J80 C;  4QNK A;  2C37 B;  5IWA E;  4QNJ A;  4DV4 E;  3ZZ0 A;  2GO4 A;  2DEI A;  2BM0 A;  1N0U A;  3KRN A;  4KHP I;  3GLL A;  1N32 I; 
#chains in the Genus database with same CATH homology
 5ELW A;  5DNL A;  4GQU A;  4QNK A;  5EKW A;  1RHY A;  4QNJ A;  5DNX A;  4LOM A;  4MU4 A;  4MU3 A;  2F1D A;  4LPF A;  4MU0 A;  5EL9 A;  2AE8 A;  4MU1 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4MU1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations