4MU3A

The form a structure of an e21q catalytic mutant of a. thaliana igpd2 in complex with mn2+ and a mixture of its substrate, 2r3s-igp, and an inhibitor, 2s3s-igp, to 1.12 a resolution
Total Genus 58
204060801001201401601800102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
186
structure length
186
Chain Sequence
SARIGEVKRETKQTNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (19-22)AH2 (72-91)S1 (12-18)TIV1 (67-70)AH1 (43-56)S2 (22-29)TI2 (29-32)S3 (36-39)S4 (59-66)TIV2 (68-71)S8 (134-135)AH3 (141-154)TIV3 (106-109)S6 (110-118)TII'1 (91-94)AH4 (168-187)S10 (156-164)S7 (123-126)TIV4 (134-137)S5 (100-107)TII1 (94-97)O1 (117-119)S9 (138-139)Updating...
connected with : NaN
molecule tags Lyase/lyase inhibitor
source organism Arabidopsis thaliana
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 58
structure length 186
sequence length 186
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu3A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu3A02
4QNJA 5EL9A 5EKWA 4LPFA 4LOMA 4QNKA 2AE8A 2F1DA 5DNXA 4MU1A 4GQUA 4MU4A 4MU3A 4MU0A 5ELWA 1RHYA 5DNLA
chains in the Genus database with same CATH superfamily
2VF3A 3M85D 2NPFA 5C0XD 4DV5I 2BM1A 4LF4I 4JG4A 4JI3I 5BR8I 2NN6E 1ZM3A 1ZXNA 1N32E 1N0UA 5JEAA 4JI6I 2PO0A 4WUCA 2HHHE 4LF8I 2C38B 3GCMA 3CDIA 4JI0I 4B3RE 1Y6ZA 4IZJA 2PO1B 1DARA 4JI7E 4DR6I 2HFSA 4AQYI 4NXMI 1Z5AA 5C0XA 4DR1E 4B3TI 1Y5YA 2E1RA 4JI4I 3ZZUA 1S4EA 2WP8B 2R42A 1XNRE 2JEBA 5FLXC 3Q6MA 2PO2B 1D6TA 5DRRA 3D4JA 2UXBI 5LMUI 2UUBI 4JV5I 1RR9A 2DEJA 4DR3I 1ZM2A 3ZZTA 4X62E 1MG7A 2C39B 4X65I 1XMOE 4OKGA 4FW9A 4R1FA 4JI5I 4FW4A 4OO1E 1XNQI 3PYEA 2R3VA 2IOQA 1OYSA 4LF5I 1I94I 4NBQA 1HNXE 4NXNE 3PRYA 4B3MI 5IT9C 1UDSA 4DV3E 2V34A 1R6LA 2EFGA 2F4VE 3OTOE 3J7AM 4IFDC 1K47A 4LF9E 1N34I 1HR0I 1UDOA 2HFUA 4LFAE 1EI1A 4I3HA 4XTJA 1PVGA 5LMNE 4MYUA 4LF6I 3GONA 4KQVA 4EMDA 1HNZE 2GO4A 4URLA 4DV7E 5K36C 2HKEA 4DU8A 2V2ZA 2HKJA 3M85G 4HYMA 1N0VC 3T1YE 1OYRA 4P52A 4GKJI 4RPFA 3QT5A 4BA1B 4DV0E 5JEAE 2BA0D 4LFBI 4IFDD 1XMQE 3CDJA 4DR7I 2GS8A 1QZRA 4JI8E 3WU3A 4DV6E 3PYDA 4IFDF 2CGEA 2Z5CB 4FWGA 4DUYI 3J7AG 4DR2I 2WW4A 5C0XE 3QT7A 4YY3E 2ZBKB 4MU0A 2PNMA 4LOMA 4X64I 1IBLI 4UTGA 1Z0EA 3K17A 4IFDA 5K36D 4DPTA 5EL9A 4OZEA 1WUUA 1Z0GA 1BKNA 2A2CA 4K0KI 2Z5EA 4HACA 3PYGA 4KHPE 4GKKE 1R6MA 5JEAF 4AIMA 1Y4UA 2VQFI 3B82A 1NZ0A 1J5EE 2BM0A 5GMEA 2X7IA 5K36A 3PYFA 1Y60A 2HK2A 4MQYA 4DR5E 2NN6B 2HHHI 4LF7I 5C0XF 3HJCA 2Q2EB 4FW3A 4HXZA 2JE6A 2AE8A 4MU1A 2DEIA 2UUAI 2BR2A 4B3RI 2UUCI 2PNZA 2Z5BB 2HK3A 2J65A 4B3SE 1A6FA 4QNKA 4LCFA 2ZITA 3B8HA 2V2QA 2JEAA 4MYTA 2UXDI 3CWVA 3GMEA 4HY1A 5DRPA 4FW5A 4DV1I 2BA1D 4X66I 2O3ZA 2JT2A 4DV5E 2IERA 4JI3E 5BR8E 5ELWA 4AM3A 3JAMQ 1RREA 1S16A 3J81C 1Z59A 4LF8E 4AIDA 4ISAA 1RHYA 1YH8A 2V8PA 1ELOA 1XHKA 4JI0E 2VESA 3QT8A 5IWAI 4AQYE 3T1HI 3K1JA 1FI4A 3B78A 2WNRA 4B3TE 4JI4E 3P3EA 2UXCI 4NXNI 4OO1B 5FLXQ 2BA0G 2CZ9A 3PS2A 4DV3I 5DRQA 4U3DA 3ZZ0A 4IS9A 4DUZE 1KKHA 4LFCI 3M6AA 1VI7A 4LCGA 2CVEA 3L7ZB 1UDQA 5LMUE 4JV5E 4IZKB 3H1CA 4DR3E 2GQ0A 4DU7A 1H72C 4IFDE 4QNJA 3ZM7A 4J3DA 2GO3A 1EA6A 1XNQE 1MX0A 4JI1I 4WUBA 5A2QQ 2C38A 2Z5BA 4Z7YA 4LF5E 4DPWA 2IOPA 4B3ME 1IBMI 2PO1A 4BA2B 1N36E 1XXEA 1NHHA 3T1YI 5L3JA 5DNXA 3K85A 2V2VA 2CG9A 1N34E 1HR0E 5K36E 4WUDA 2WP8A 1E3HA 4M1KA 4Z7CA 1P42A 5JEAB 2PO0B 4DV6I 4DPUA 4FW6A 2PO2A 2PNLA 4DR4I 4U3BA 4N3OA 5EKWA 1FJGI 1HNWI 2ZM6I 2O1TA 5C0XB 4DV4I 3UHMA 2C39A 4PRXA 4LCHA 1USUA 1E3PA 3WU6A 3J80C 2E5LE 4OX9I 4GKJE 2JEBB 1Z0TA 3HKMA 4GKKI 4KHPI 4MU4A 5K36F 1UEKA 3PS1A 1H73A 4YHHI 2J7KA 1IBKI 1N33I 4DV2I 1ZM4A 4DPYA 3V5RA 3U1KA 4DUYE 4DR2E 4LPFA 4FN5A 4JI2E 3F0NA 1ZM9A 3Q1QA 1N32I 4DR5I 2VQEE 5DNLA 4JYAE 3KRNA 1YHCA 2XEXA 4FW7A 1H7SA 4X64E 1IBLE 2O1UA 2UU9E 1H7UA 1KVKA 4JI7I 3P3CA 4DR1I 2NN6C 3HULA 4BA2A 1KIJA 1OJ4A 4P7AA 4FWHA 5GMDA 4DXLA 2VQFE 2C37B 1XNRI 5FWKA 1H74A 4BA1A 4LF4E 1Z0VA 4LF7E 3LNUA 4FWDA 4JI6E 5LL6R 3JAMC 1Z5BA 2UUAE 2AJ4A 2UUCE 2Z5CA 1Z0WA 1Z5CA 1Y4SA 1KTVA 3WU4A 4X62I 1XMOI 3ZKBA 4DR6E 1USVA 4NXME 2UXDE 3H4LA 1HNXI 3M7ND 4DV1E 3J81Q 4X66E 2NN6D 4DUZI 2F4VI 3V2UC 3OTOI 2NN6F 1VISA 4LF9I 1ZXMA 4OO1C 2UXBE 5DROA 2UUBE 4LFAI 2LJPA 5LMNI 5IWAE 2O1VA 3T1HE 4X65E 4IFDB 3Q6NA 2NN6A 4DPXA 1FKAE 4JI5E 5IT9Q 2UXCE 4USKA 1HNZI 1FNMA 4DV7I 1I94E 3B4TA 4HACB 4PU9A 1N36I 5A2QC 1FWKA 4LFCE 2BV3A 4DV0I 2C37A 5K36B 1PKPA 1XMQI 2JE6B 3P06A 3P76A 4JI8I 4OO1D 2X36A 2BR2B 4PRVA 4LF6E 2PNZB 1B62A 1NHJA 1U2RA 3WU5A 4JI1E 4IZJB 4OO1F 4YY3I 4ZVIA 4GQUA 2JEAB 1IBME 5JEAC 3NZKA 2E5LI 3GLLA 4UT4A 1Z0CA 2IESA 2OI2A 2BA1G 3DD6A 4OO1A 1OYPA 3LPSA 2A2DA 4USMA 5C0XC 4LFBE 4DR7E 3PS3A 3U1YA 3L7ZA 1J5EI 4JI2I 1NHIA 3ZKDA 4ED4A 4DR4E 4MDTA 1FJGE 1HK7A 3LTOA 1HNWE 2F1DA 2ZM6E 4IZKA 2VQEI 2WNRB 3J80Q 4JYAI 4DV4E 1B63A 1Z0BA 2UU9I 3M7NG 4MU3A 4B3SI 4OX9E 5JEAD 1MU5A 1FWLA 2O1WA 3P3GA 4K0KE 1UDNA 4IZJD 4YHHE 1PIEA 1IBKE 1N33E 4DV2E 3QT6A
chains in the Genus database with same CATH topology
4QNJA 5EL9A 5EKWA 4LPFA 4LOMA 4QNKA 2AE8A 2F1DA 5DNXA 4MU1A 4GQUA 4MU4A 4MU3A 4MU0A 5ELWA 1RHYA 5DNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNJ A;  5EL9 A;  5EKW A;  4LPF A;  4LOM A;  4QNK A;  2AE8 A;  2F1D A;  5DNX A;  4MU1 A;  4GQU A;  4MU4 A;  4MU3 A;  4MU0 A;  5ELW A;  1RHY A;  5DNL A; 
#chains in the Genus database with same CATH topology
 2VF3 A;  3M85 D;  2NPF A;  5C0X D;  4DV5 I;  2BM1 A;  4LF4 I;  4JG4 A;  4JI3 I;  5BR8 I;  2NN6 E;  1ZM3 A;  1ZXN A;  1N32 E;  1N0U A;  5JEA A;  4JI6 I;  2PO0 A;  4WUC A;  2HHH E;  4LF8 I;  2C38 B;  3GCM A;  3CDI A;  4JI0 I;  4B3R E;  1Y6Z A;  4IZJ A;  2PO1 B;  1DAR A;  4JI7 E;  4DR6 I;  2HFS A;  4AQY I;  4NXM I;  1Z5A A;  5C0X A;  4DR1 E;  4B3T I;  1Y5Y A;  2E1R A;  4JI4 I;  3ZZU A;  1S4E A;  2WP8 B;  2R42 A;  1XNR E;  2JEB A;  5FLX C;  3Q6M A;  2PO2 B;  1D6T A;  5DRR A;  3D4J A;  2UXB I;  5LMU I;  2UUB I;  4JV5 I;  1RR9 A;  2DEJ A;  4DR3 I;  1ZM2 A;  3ZZT A;  4X62 E;  1MG7 A;  2C39 B;  4X65 I;  1XMO E;  4OKG A;  4FW9 A;  4R1F A;  4JI5 I;  4FW4 A;  4OO1 E;  1XNQ I;  3PYE A;  2R3V A;  2IOQ A;  1OYS A;  4LF5 I;  1I94 I;  4NBQ A;  1HNX E;  4NXN E;  3PRY A;  4B3M I;  5IT9 C;  1UDS A;  4DV3 E;  2V34 A;  1R6L A;  2EFG A;  2F4V E;  3OTO E;  3J7A M;  4IFD C;  1K47 A;  4LF9 E;  1N34 I;  1HR0 I;  1UDO A;  2HFU A;  4LFA E;  1EI1 A;  4I3H A;  4XTJ A;  1PVG A;  5LMN E;  4MYU A;  4LF6 I;  3GON A;  4KQV A;  4EMD A;  1HNZ E;  2GO4 A;  4URL A;  4DV7 E;  5K36 C;  2HKE A;  4DU8 A;  2V2Z A;  2HKJ A;  3M85 G;  4HYM A;  1N0V C;  3T1Y E;  1OYR A;  4P52 A;  4GKJ I;  4RPF A;  3QT5 A;  4BA1 B;  4DV0 E;  5JEA E;  2BA0 D;  4LFB I;  4IFD D;  1XMQ E;  3CDJ A;  4DR7 I;  2GS8 A;  1QZR A;  4JI8 E;  3WU3 A;  4DV6 E;  3PYD A;  4IFD F;  2CGE A;  2Z5C B;  4FWG A;  4DUY I;  3J7A G;  4DR2 I;  2WW4 A;  5C0X E;  3QT7 A;  4YY3 E;  2ZBK B;  4MU0 A;  2PNM A;  4LOM A;  4X64 I;  1IBL I;  4UTG A;  1Z0E A;  3K17 A;  4IFD A;  5K36 D;  4DPT A;  5EL9 A;  4OZE A;  1WUU A;  1Z0G A;  1BKN A;  2A2C A;  4K0K I;  2Z5E A;  4HAC A;  3PYG A;  4KHP E;  4GKK E;  1R6M A;  5JEA F;  4AIM A;  1Y4U A;  2VQF I;  3B82 A;  1NZ0 A;  1J5E E;  2BM0 A;  5GME A;  2X7I A;  5K36 A;  3PYF A;  1Y60 A;  2HK2 A;  4MQY A;  4DR5 E;  2NN6 B;  2HHH I;  4LF7 I;  5C0X F;  3HJC A;  2Q2E B;  4FW3 A;  4HXZ A;  2JE6 A;  2AE8 A;  4MU1 A;  2DEI A;  2UUA I;  2BR2 A;  4B3R I;  2UUC I;  2PNZ A;  2Z5B B;  2HK3 A;  2J65 A;  4B3S E;  1A6F A;  4QNK A;  4LCF A;  2ZIT A;  3B8H A;  2V2Q A;  2JEA A;  4MYT A;  2UXD I;  3CWV A;  3GME A;  4HY1 A;  5DRP A;  4FW5 A;  4DV1 I;  2BA1 D;  4X66 I;  2O3Z A;  2JT2 A;  4DV5 E;  2IER A;  4JI3 E;  5BR8 E;  5ELW A;  4AM3 A;  3JAM Q;  1RRE A;  1S16 A;  3J81 C;  1Z59 A;  4LF8 E;  4AID A;  4ISA A;  1RHY A;  1YH8 A;  2V8P A;  1ELO A;  1XHK A;  4JI0 E;  2VES A;  3QT8 A;  5IWA I;  4AQY E;  3T1H I;  3K1J A;  1FI4 A;  3B78 A;  2WNR A;  4B3T E;  4JI4 E;  3P3E A;  2UXC I;  4NXN I;  4OO1 B;  5FLX Q;  2BA0 G;  2CZ9 A;  3PS2 A;  4DV3 I;  5DRQ A;  4U3D A;  3ZZ0 A;  4IS9 A;  4DUZ E;  1KKH A;  4LFC I;  3M6A A;  1VI7 A;  4LCG A;  2CVE A;  3L7Z B;  1UDQ A;  5LMU E;  4JV5 E;  4IZK B;  3H1C A;  4DR3 E;  2GQ0 A;  4DU7 A;  1H72 C;  4IFD E;  4QNJ A;  3ZM7 A;  4J3D A;  2GO3 A;  1EA6 A;  1XNQ E;  1MX0 A;  4JI1 I;  4WUB A;  5A2Q Q;  2C38 A;  2Z5B A;  4Z7Y A;  4LF5 E;  4DPW A;  2IOP A;  4B3M E;  1IBM I;  2PO1 A;  4BA2 B;  1N36 E;  1XXE A;  1NHH A;  3T1Y I;  5L3J A;  5DNX A;  3K85 A;  2V2V A;  2CG9 A;  1N34 E;  1HR0 E;  5K36 E;  4WUD A;  2WP8 A;  1E3H A;  4M1K A;  4Z7C A;  1P42 A;  5JEA B;  2PO0 B;  4DV6 I;  4DPU A;  4FW6 A;  2PO2 A;  2PNL A;  4DR4 I;  4U3B A;  4N3O A;  5EKW A;  1FJG I;  1HNW I;  2ZM6 I;  2O1T A;  5C0X B;  4DV4 I;  3UHM A;  2C39 A;  4PRX A;  4LCH A;  1USU A;  1E3P A;  3WU6 A;  3J80 C;  2E5L E;  4OX9 I;  4GKJ E;  2JEB B;  1Z0T A;  3HKM A;  4GKK I;  4KHP I;  4MU4 A;  5K36 F;  1UEK A;  3PS1 A;  1H73 A;  4YHH I;  2J7K A;  1IBK I;  1N33 I;  4DV2 I;  1ZM4 A;  4DPY A;  3V5R A;  3U1K A;  4DUY E;  4DR2 E;  4LPF A;  4FN5 A;  4JI2 E;  3F0N A;  1ZM9 A;  3Q1Q A;  1N32 I;  4DR5 I;  2VQE E;  5DNL A;  4JYA E;  3KRN A;  1YHC A;  2XEX A;  4FW7 A;  1H7S A;  4X64 E;  1IBL E;  2O1U A;  2UU9 E;  1H7U A;  1KVK A;  4JI7 I;  3P3C A;  4DR1 I;  2NN6 C;  3HUL A;  4BA2 A;  1KIJ A;  1OJ4 A;  4P7A A;  4FWH A;  5GMD A;  4DXL A;  2VQF E;  2C37 B;  1XNR I;  5FWK A;  1H74 A;  4BA1 A;  4LF4 E;  1Z0V A;  4LF7 E;  3LNU A;  4FWD A;  4JI6 E;  5LL6 R;  3JAM C;  1Z5B A;  2UUA E;  2AJ4 A;  2UUC E;  2Z5C A;  1Z0W A;  1Z5C A;  1Y4S A;  1KTV A;  3WU4 A;  4X62 I;  1XMO I;  3ZKB A;  4DR6 E;  1USV A;  4NXM E;  2UXD E;  3H4L A;  1HNX I;  3M7N D;  4DV1 E;  3J81 Q;  4X66 E;  2NN6 D;  4DUZ I;  2F4V I;  3V2U C;  3OTO I;  2NN6 F;  1VIS A;  4LF9 I;  1ZXM A;  4OO1 C;  2UXB E;  5DRO A;  2UUB E;  4LFA I;  2LJP A;  5LMN I;  5IWA E;  2O1V A;  3T1H E;  4X65 E;  4IFD B;  3Q6N A;  2NN6 A;  4DPX A;  1FKA E;  4JI5 E;  5IT9 Q;  2UXC E;  4USK A;  1HNZ I;  1FNM A;  4DV7 I;  1I94 E;  3B4T A;  4HAC B;  4PU9 A;  1N36 I;  5A2Q C;  1FWK A;  4LFC E;  2BV3 A;  4DV0 I;  2C37 A;  5K36 B;  1PKP A;  1XMQ I;  2JE6 B;  3P06 A;  3P76 A;  4JI8 I;  4OO1 D;  2X36 A;  2BR2 B;  4PRV A;  4LF6 E;  2PNZ B;  1B62 A;  1NHJ A;  1U2R A;  3WU5 A;  4JI1 E;  4IZJ B;  4OO1 F;  4YY3 I;  4ZVI A;  4GQU A;  2JEA B;  1IBM E;  5JEA C;  3NZK A;  2E5L I;  3GLL A;  4UT4 A;  1Z0C A;  2IES A;  2OI2 A;  2BA1 G;  3DD6 A;  4OO1 A;  1OYP A;  3LPS A;  2A2D A;  4USM A;  5C0X C;  4LFB E;  4DR7 E;  3PS3 A;  3U1Y A;  3L7Z A;  1J5E I;  4JI2 I;  1NHI A;  3ZKD A;  4ED4 A;  4DR4 E;  4MDT A;  1FJG E;  1HK7 A;  3LTO A;  1HNW E;  2F1D A;  2ZM6 E;  4IZK A;  2VQE I;  2WNR B;  3J80 Q;  4JYA I;  4DV4 E;  1B63 A;  1Z0B A;  2UU9 I;  3M7N G;  4MU3 A;  4B3S I;  4OX9 E;  5JEA D;  1MU5 A;  1FWL A;  2O1W A;  3P3G A;  4K0K E;  1UDN A;  4IZJ D;  4YHH E;  1PIE A;  1IBK E;  1N33 E;  4DV2 E;  3QT6 A; 
#chains in the Genus database with same CATH homology
 4QNJ A;  5EL9 A;  5EKW A;  4LPF A;  4LOM A;  4QNK A;  2AE8 A;  2F1D A;  5DNX A;  4MU1 A;  4GQU A;  4MU4 A;  4MU3 A;  4MU0 A;  5ELW A;  1RHY A;  5DNL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.