4MU4A

The form b structure of an e21q catalytic mutant of a. thaliana igpd2 in complex with mn2+ and its substrate, 2r3s-igp, to 1.41 a resolution
Total Genus 63
204060801001201401601800102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
199
structure length
199
Chain Sequence
SARIGEVKRETKQTNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS
2040608010012014016018015010050
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (19-22)S1 (12-19)S4 (59-66)TI3 (67-70)S2 (22-29)AH1 (43-56)TI2 (29-32)S3 (36-39)AH4 (168-187)TIV1 (68-71)S8 (134-135)AH2 (72-91)TII'1 (91-94)TIV2 (106-109)S6 (110-117)TI4 (190-193)O1 (98-100)S5 (100-107)AH3 (141-154)S10 (157-164)S7 (123-126)TIV3 (134-137)O2 (197-199)TI5 (199-202)TII1 (94-97)S9 (138-139)TI'1 (193-196)Updating...
connected with : NaN
molecule tags Lyase
source organism Arabidopsis thaliana
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 63
structure length 199
sequence length 199
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu4A02
2F1DA 4QNKA 4MU4A 5DNXA 4MU1A 2AE8A 1RHYA 4LPFA 5ELWA 4LOMA 4MU3A 4QNJA 5DNLA 5EL9A 5EKWA 4GQUA 4MU0A
chains in the Genus database with same CATH superfamily
1HNWE 2JT2A 3HKMA 3HULA 3KRNA 1FKAE 4MU4A 4DPUA 3GLLA 1H72C 4LFCE 2X36A 2V2ZA 4JI5E 1RR9A 4ZVIA 1XMQE 4RPFA 3Q1QA 4JI4I 2A2CA 2UUCE 3B8HA 3LPSA 4DR6E 4UTGA 2NPFA 5IWAI 3CDJA 3PYEA 4IFDF 2IESA 4X64I 5C0XB 4GKJE 1MU5A 2WP8A 1HNZI 1OYRA 4DR7I 4DV2I 4JYAE 1U2RA 3B82A 3JAMQ 4JI1E 4DXLA 1RHYA 4OO1B 3OTOE 5A2QQ 1N33I 4WUBA 4HYMA 4DUYI 4JI2I 4HXZA 1Z0VA 2E5LI 2HK3A 2NN6C 1K47A 4FN5A 1KVKA 4BA2B 1N34E 3QT8A 2PO2A 3J81C 2JE6B 4JI8I 5K36F 2NN6A 3K85A 1PIEA 3L7ZA 4GKKE 2A2DA 4LCFA 4X65I 2JEBA 5IT9Q 3ZKBA 1J5EI 3V5RA 4USKA 4XTJA 4IZJD 3WU3A 4JI3I 3P3GA 4JI7E 4OZEA 4PRXA 4B3TI 2GO4A 2C37B 5K36E 4IFDB 4LF4E 4B3RE 3NZKA 1PVGA 4OKGA 2ZBKB 5DNXA 4DR1E 1UDSA 1EI1A 5GMDA 2UUBE 1FWKA 2HHHE 4NXME 2Z5BA 3J80C 4LFAE 3WU5A 4Z7YA 1E3HA 1I94E 5C0XA 1ZM3A 4LCHA 1N36E 3T1HE 1NHHA 2O1VA 2ZM6I 1R6MA 1Z5AA 2V2VA 4AQYI 3DD6A 1UDOA 3GMEA 1Y5YA 4JI0I 4LPFA 4DV7E 4NBQA 2GQ0A 1IBMI 3WU6A 3UHMA 2V8PA 4IZKB 4JG4A 3PS3A 1IBKI 1A6FA 1Z5BA 1HNXE 4MYTA 2C38A 4LF9E 2UUAE 2PO1B 3P76A 4QNKA 3PYGA 5FWKA 4B3SE 3B78A 4FW6A 4DV0I 2BR2B 1XMOE 2JE6A 2F1DA 2WNRB 4JI6E 4DR2I 2C39B 4OO1F 5JEAB 5EL9A 1Z59A 2F4VI 4DV6E 2JEAB 4NXNI 5A2QC 4DV1I 4DV5E 4JV5I 5C0XE 2WW4A 1FJGE 1Y60A 4MU3A 4LF5E 3F0NA 4YHHI 2C37A 2UXCI 5LMNI 4U3DA 4IFDA 4OO1E 2UXDE 1KKHA 3M7ND 4DV3I 2V34A 1H7UA 3P3EA 1E3PA 1HNWI 2O1WA 1S16A 3ZM7A 2IOPA 1Z5CA 2BV3A 2IERA 3GONA 3M7NG 3PYDA 5DNLA 4DR4I 2HFUA 5K36C 1P42A 2BM1A 1ZM2A 4JI4E 4LF6I 1MG7A 1HR0I 4BA1B 1HK7A 4QNJA 4FWHA 2UUCI 4LF8I 2PNMA 1NHIA 3U1KA 1XNQE 4KQVA 5IWAE 3H1CA 4DR6I 4HACB 1YHCA 4DU7A 5K36A 4AM3A 3ZZ0A 4X66I 2Z5EA 4DPYA 1PKPA 4X64E 4GKJI 1UDNA 2AJ4A 1Z0BA 1HNZE 4DR7E 4DV2E 2Q2EB 3GCMA 2PO1A 4JYAI 4FW5A 1ELOA 3B4TA 4DPTA 4IFDE 2O1UA 3K1JA 1H74A 1H73A 1N33E 2BM0A 2C39A 5K36D 4K0KE 1VISA 5LMUI 4DUYE 4JI2E 1ZM4A 1EA6A 3CWVA 2PO0B 3PRYA 5DRQA 2LJPA 4KHPI 1N34I 2DEJA 1FI4A 2CVEA 2VQEE 3T1YE 4I3HA 2EFGA 4GKKI 4X65E 3ZZUA 5JEAF 2AE8A 2NN6D 5L3JA 1XXEA 1BKNA 2VF3A 3CDIA 4JI3E 4B3ME 4FWDA 5C0XC 4DR5E 3P3CA 2VESA 4MYUA 4LF4I 4OO1C 5JEAE 1YH8A 4BA1A 2O1TA 1NZ0A 4DV4E 2UUBI 3J7AM 4HACA 3WU4A 4OO1A 4X62E 1I94I 4PU9A 4DU8A 1N36I 3T1HI 1N32I 4AQYE 1MX0A 4FW7A 3U1YA 5C0XD 4BA2A 1FWLA 4DR3I 2VQFE 4OO1D 1IBKE 2R42A 2WP8B 4UT4A 5DRRA 4OX9E 4DUZI 2PO0A 4YY3I 4FW9A 1QZRA 2CG9A 2UUAI 3JAMC 2BA1D 1D6TA 2UU9E 3PS1A 4J3DA 4LFBI 4JI6I 4LF7I 4IFDC 5BR8E 1Z0EA 1IBLI 3QT5A 4HY1A 2BA1G 4MQYA 4Z7CA 4IZJB 1XNRI 2UXBI 4DV1E 2OI2A 4JV5E 2HFSA 1Y4SA 1FJGI 2NN6B 4LOMA 4YHHE 2UXCE 1NHJA 3J80Q 1B63A 2GO3A 3HJCA 2JEBB 5IT9C 4LFCI 1VI7A 4JI5I 4DV3E 4IFDD 4MDTA 1XMQI 2V2QA 1KIJA 1Y6ZA 1OJ4A 4AIDA 4DR4E 2CGEA 4FW3A 1KTVA 2PNZB 3QT7A 4IZKA 4EMDA 4LF6E 1USUA 3D4JA 1HR0E 1ZM9A 2J65A 4LF8E 4URLA 2Z5BB 1XNQI 2Z5CB 3V2UC 5JEAC 4JI1I 4X66E 1B62A 1USVA 4WUCA 2BR2A 2IOQA 2WNRA 4ISAA 3OTOI 4PRVA 2CZ9A 5JEAA 2HKJA 5EKWA 2E5LE 1ZXMA 1DARA 2JEAA 1Z0WA 4DPXA 4P52A 4USMA 5FLXQ 5LMUE 4K0KI 4JI8E 4LCGA 4FW4A 1OYPA 4IZJA 2C38B 4KHPE 1R6LA 5JEAD 3ZKDA 1J5EE 5GMEA 2VQEI 3T1YI 2X7IA 4IS9A 4JI7I 1ZXNA 1S4EA 4B3TE 3M6AA 4AIMA 4B3RI 2PNLA 4GQUA 4MU0A 2O3ZA 3K17A 1XHKA 3LNUA 5DROA 1UDQA 2J7KA 4B3MI 4DR1I 5LL6R 2R3VA 4U3BA 1WUUA 2HHHI 4NXMI 1N0VC 1RREA 2NN6F 4DR5I 3P06A 4LFAI 2PNZA 2HK2A 3PYFA 5ELWA 4DV4I 2ZM6E 4ED4A 2Z5CA 1Y4UA 4P7AA 3PS2A 3J7AG 3Q6MA 4JI0E 4DV7I 2E1RA 2HKEA 4X62I 1IBME 1Z0GA 4FWGA 1OYSA 2NN6E 3M85D 3J81Q 1N32E 5DRPA 1HNXI 4LF9I 5K36B 4B3SI 4DV0E 3H4LA 3M85G 4DR3E 3Q6NA 1XMOI 2VQFI 2DEIA 3QT6A 4MU1A 1FNMA 3ZZTA 4DR2E 1UEKA 4N3OA 4DUZE 4DPWA 2GS8A 3LTOA 4YY3E 4OX9I 5C0XF 1H7SA 1N0UA 4R1FA 2BA0D 2UU9I 2F4VE 2ZITA 4DV6I 4LFBE 4NXNE 4DV5I 4LF7E 1Z0CA 2PO2B 5BR8I 1IBLE 4M1KA 2BA0G 1Z0TA 4LF5I 5LMNE 3L7ZB 4WUDA 1XNRE 2UXBE 2XEXA 2UXDI 5FLXC
chains in the Genus database with same CATH topology
2F1DA 4QNKA 4MU4A 5DNXA 4MU1A 2AE8A 1RHYA 4LPFA 5ELWA 4LOMA 4MU3A 4QNJA 5DNLA 5EL9A 5EKWA 4GQUA 4MU0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1D A;  4QNK A;  4MU4 A;  5DNX A;  4MU1 A;  2AE8 A;  1RHY A;  4LPF A;  5ELW A;  4LOM A;  4MU3 A;  4QNJ A;  5DNL A;  5EL9 A;  5EKW A;  4GQU A;  4MU0 A; 
#chains in the Genus database with same CATH topology
 1HNW E;  2JT2 A;  3HKM A;  3HUL A;  3KRN A;  1FKA E;  4MU4 A;  4DPU A;  3GLL A;  1H72 C;  4LFC E;  2X36 A;  2V2Z A;  4JI5 E;  1RR9 A;  4ZVI A;  1XMQ E;  4RPF A;  3Q1Q A;  4JI4 I;  2A2C A;  2UUC E;  3B8H A;  3LPS A;  4DR6 E;  4UTG A;  2NPF A;  5IWA I;  3CDJ A;  3PYE A;  4IFD F;  2IES A;  4X64 I;  5C0X B;  4GKJ E;  1MU5 A;  2WP8 A;  1HNZ I;  1OYR A;  4DR7 I;  4DV2 I;  4JYA E;  1U2R A;  3B82 A;  3JAM Q;  4JI1 E;  4DXL A;  1RHY A;  4OO1 B;  3OTO E;  5A2Q Q;  1N33 I;  4WUB A;  4HYM A;  4DUY I;  4JI2 I;  4HXZ A;  1Z0V A;  2E5L I;  2HK3 A;  2NN6 C;  1K47 A;  4FN5 A;  1KVK A;  4BA2 B;  1N34 E;  3QT8 A;  2PO2 A;  3J81 C;  2JE6 B;  4JI8 I;  5K36 F;  2NN6 A;  3K85 A;  1PIE A;  3L7Z A;  4GKK E;  2A2D A;  4LCF A;  4X65 I;  2JEB A;  5IT9 Q;  3ZKB A;  1J5E I;  3V5R A;  4USK A;  4XTJ A;  4IZJ D;  3WU3 A;  4JI3 I;  3P3G A;  4JI7 E;  4OZE A;  4PRX A;  4B3T I;  2GO4 A;  2C37 B;  5K36 E;  4IFD B;  4LF4 E;  4B3R E;  3NZK A;  1PVG A;  4OKG A;  2ZBK B;  5DNX A;  4DR1 E;  1UDS A;  1EI1 A;  5GMD A;  2UUB E;  1FWK A;  2HHH E;  4NXM E;  2Z5B A;  3J80 C;  4LFA E;  3WU5 A;  4Z7Y A;  1E3H A;  1I94 E;  5C0X A;  1ZM3 A;  4LCH A;  1N36 E;  3T1H E;  1NHH A;  2O1V A;  2ZM6 I;  1R6M A;  1Z5A A;  2V2V A;  4AQY I;  3DD6 A;  1UDO A;  3GME A;  1Y5Y A;  4JI0 I;  4LPF A;  4DV7 E;  4NBQ A;  2GQ0 A;  1IBM I;  3WU6 A;  3UHM A;  2V8P A;  4IZK B;  4JG4 A;  3PS3 A;  1IBK I;  1A6F A;  1Z5B A;  1HNX E;  4MYT A;  2C38 A;  4LF9 E;  2UUA E;  2PO1 B;  3P76 A;  4QNK A;  3PYG A;  5FWK A;  4B3S E;  3B78 A;  4FW6 A;  4DV0 I;  2BR2 B;  1XMO E;  2JE6 A;  2F1D A;  2WNR B;  4JI6 E;  4DR2 I;  2C39 B;  4OO1 F;  5JEA B;  5EL9 A;  1Z59 A;  2F4V I;  4DV6 E;  2JEA B;  4NXN I;  5A2Q C;  4DV1 I;  4DV5 E;  4JV5 I;  5C0X E;  2WW4 A;  1FJG E;  1Y60 A;  4MU3 A;  4LF5 E;  3F0N A;  4YHH I;  2C37 A;  2UXC I;  5LMN I;  4U3D A;  4IFD A;  4OO1 E;  2UXD E;  1KKH A;  3M7N D;  4DV3 I;  2V34 A;  1H7U A;  3P3E A;  1E3P A;  1HNW I;  2O1W A;  1S16 A;  3ZM7 A;  2IOP A;  1Z5C A;  2BV3 A;  2IER A;  3GON A;  3M7N G;  3PYD A;  5DNL A;  4DR4 I;  2HFU A;  5K36 C;  1P42 A;  2BM1 A;  1ZM2 A;  4JI4 E;  4LF6 I;  1MG7 A;  1HR0 I;  4BA1 B;  1HK7 A;  4QNJ A;  4FWH A;  2UUC I;  4LF8 I;  2PNM A;  1NHI A;  3U1K A;  1XNQ E;  4KQV A;  5IWA E;  3H1C A;  4DR6 I;  4HAC B;  1YHC A;  4DU7 A;  5K36 A;  4AM3 A;  3ZZ0 A;  4X66 I;  2Z5E A;  4DPY A;  1PKP A;  4X64 E;  4GKJ I;  1UDN A;  2AJ4 A;  1Z0B A;  1HNZ E;  4DR7 E;  4DV2 E;  2Q2E B;  3GCM A;  2PO1 A;  4JYA I;  4FW5 A;  1ELO A;  3B4T A;  4DPT A;  4IFD E;  2O1U A;  3K1J A;  1H74 A;  1H73 A;  1N33 E;  2BM0 A;  2C39 A;  5K36 D;  4K0K E;  1VIS A;  5LMU I;  4DUY E;  4JI2 E;  1ZM4 A;  1EA6 A;  3CWV A;  2PO0 B;  3PRY A;  5DRQ A;  2LJP A;  4KHP I;  1N34 I;  2DEJ A;  1FI4 A;  2CVE A;  2VQE E;  3T1Y E;  4I3H A;  2EFG A;  4GKK I;  4X65 E;  3ZZU A;  5JEA F;  2AE8 A;  2NN6 D;  5L3J A;  1XXE A;  1BKN A;  2VF3 A;  3CDI A;  4JI3 E;  4B3M E;  4FWD A;  5C0X C;  4DR5 E;  3P3C A;  2VES A;  4MYU A;  4LF4 I;  4OO1 C;  5JEA E;  1YH8 A;  4BA1 A;  2O1T A;  1NZ0 A;  4DV4 E;  2UUB I;  3J7A M;  4HAC A;  3WU4 A;  4OO1 A;  4X62 E;  1I94 I;  4PU9 A;  4DU8 A;  1N36 I;  3T1H I;  1N32 I;  4AQY E;  1MX0 A;  4FW7 A;  3U1Y A;  5C0X D;  4BA2 A;  1FWL A;  4DR3 I;  2VQF E;  4OO1 D;  1IBK E;  2R42 A;  2WP8 B;  4UT4 A;  5DRR A;  4OX9 E;  4DUZ I;  2PO0 A;  4YY3 I;  4FW9 A;  1QZR A;  2CG9 A;  2UUA I;  3JAM C;  2BA1 D;  1D6T A;  2UU9 E;  3PS1 A;  4J3D A;  4LFB I;  4JI6 I;  4LF7 I;  4IFD C;  5BR8 E;  1Z0E A;  1IBL I;  3QT5 A;  4HY1 A;  2BA1 G;  4MQY A;  4Z7C A;  4IZJ B;  1XNR I;  2UXB I;  4DV1 E;  2OI2 A;  4JV5 E;  2HFS A;  1Y4S A;  1FJG I;  2NN6 B;  4LOM A;  4YHH E;  2UXC E;  1NHJ A;  3J80 Q;  1B63 A;  2GO3 A;  3HJC A;  2JEB B;  5IT9 C;  4LFC I;  1VI7 A;  4JI5 I;  4DV3 E;  4IFD D;  4MDT A;  1XMQ I;  2V2Q A;  1KIJ A;  1Y6Z A;  1OJ4 A;  4AID A;  4DR4 E;  2CGE A;  4FW3 A;  1KTV A;  2PNZ B;  3QT7 A;  4IZK A;  4EMD A;  4LF6 E;  1USU A;  3D4J A;  1HR0 E;  1ZM9 A;  2J65 A;  4LF8 E;  4URL A;  2Z5B B;  1XNQ I;  2Z5C B;  3V2U C;  5JEA C;  4JI1 I;  4X66 E;  1B62 A;  1USV A;  4WUC A;  2BR2 A;  2IOQ A;  2WNR A;  4ISA A;  3OTO I;  4PRV A;  2CZ9 A;  5JEA A;  2HKJ A;  5EKW A;  2E5L E;  1ZXM A;  1DAR A;  2JEA A;  1Z0W A;  4DPX A;  4P52 A;  4USM A;  5FLX Q;  5LMU E;  4K0K I;  4JI8 E;  4LCG A;  4FW4 A;  1OYP A;  4IZJ A;  2C38 B;  4KHP E;  1R6L A;  5JEA D;  3ZKD A;  1J5E E;  5GME A;  2VQE I;  3T1Y I;  2X7I A;  4IS9 A;  4JI7 I;  1ZXN A;  1S4E A;  4B3T E;  3M6A A;  4AIM A;  4B3R I;  2PNL A;  4GQU A;  4MU0 A;  2O3Z A;  3K17 A;  1XHK A;  3LNU A;  5DRO A;  1UDQ A;  2J7K A;  4B3M I;  4DR1 I;  5LL6 R;  2R3V A;  4U3B A;  1WUU A;  2HHH I;  4NXM I;  1N0V C;  1RRE A;  2NN6 F;  4DR5 I;  3P06 A;  4LFA I;  2PNZ A;  2HK2 A;  3PYF A;  5ELW A;  4DV4 I;  2ZM6 E;  4ED4 A;  2Z5C A;  1Y4U A;  4P7A A;  3PS2 A;  3J7A G;  3Q6M A;  4JI0 E;  4DV7 I;  2E1R A;  2HKE A;  4X62 I;  1IBM E;  1Z0G A;  4FWG A;  1OYS A;  2NN6 E;  3M85 D;  3J81 Q;  1N32 E;  5DRP A;  1HNX I;  4LF9 I;  5K36 B;  4B3S I;  4DV0 E;  3H4L A;  3M85 G;  4DR3 E;  3Q6N A;  1XMO I;  2VQF I;  2DEI A;  3QT6 A;  4MU1 A;  1FNM A;  3ZZT A;  4DR2 E;  1UEK A;  4N3O A;  4DUZ E;  4DPW A;  2GS8 A;  3LTO A;  4YY3 E;  4OX9 I;  5C0X F;  1H7S A;  1N0U A;  4R1F A;  2BA0 D;  2UU9 I;  2F4V E;  2ZIT A;  4DV6 I;  4LFB E;  4NXN E;  4DV5 I;  4LF7 E;  1Z0C A;  2PO2 B;  5BR8 I;  1IBL E;  4M1K A;  2BA0 G;  1Z0T A;  4LF5 I;  5LMN E;  3L7Z B;  4WUD A;  1XNR E;  2UXB E;  2XEX A;  2UXD I;  5FLX C; 
#chains in the Genus database with same CATH homology
 2F1D A;  4QNK A;  4MU4 A;  5DNX A;  4MU1 A;  2AE8 A;  1RHY A;  4LPF A;  5ELW A;  4LOM A;  4MU3 A;  4QNJ A;  5DNL A;  5EL9 A;  5EKW A;  4GQU A;  4MU0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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