4QNK | Genus

Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	185
structure length	185
Chain Sequence	SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Arabidopsis thaliana
publication title	Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination. pubmed doi rcsb
molecule keywords	Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus	58
structure length	185
sequence length	185
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature	ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date	2014-06-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00475	IGPD	Imidazoleglycerol-phosphate dehydratase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.230.40	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	Imidazole glycerol phosphate dehydratase; domain 1	4qnkA01
3.30.230.40	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5; domain 2	Imidazole glycerol phosphate dehydratase; domain 1	4qnkA02

5DNLA 1RHYA 4QNJA 4MU4A 5DNXA 4GQUA 5EL9A 4QNKA 4MU3A 4MU1A 4LOMA 2AE8A 5EKWA 2F1DA 4LPFA 5ELWA 4MU0A
chains in the Genus database with same CATH superfamily

4JI1E 2UXBE 1USUA 2BA1G 1H7SA 4GKJE 1EI1A 4IFDB 2GO4A 4FWGA 4HACA 2F4VE 1N36I 4MU1A 2A2CA 2PO2B 2JE6A 2LJPA 4PRVA 5IT9C 1H73A 1S16A 4DPTA 4ED4A 3J7AM 4DR6I 4JYAE 2PO0B 4JI0E 4NXMI 5K36D 4DV6I 2AE8A 2OI2A 1XNQI 2UUCE 4BA2A 3J7AG 4AQYI 5LMNI 3GLLA 1N32I 2HFUA 1QZRA 4DPYA 1N34E 5DROA 3V5RA 1XXEA 3NZKA 1Y4SA 4DV7E 5C0XF 1E3HA 2PO1B 4JI6E 2UXCI 4IZJA 4B3MI 2X36A 2UU9E 5JEAB 1ZM4A 3WU4A 4LF6E 4LPFA 4JI1I 4JI5I 3B8HA 3V2UC 2UXBI 1HNZE 4GKJI 1Y4UA 2VQFE 3J80C 2F4VI 2O1VA 4DPWA 4JI2E 3M7ND 2BV3A 4RPFA 4USMA 2UUBE 5K36B 4OO1A 3K85A 4DV2E 3B82A 1Z0GA 1FWKA 1ZXMA 4JYAI 3ZZUA 4P7AA 3K17A 1RR9A 3QT7A 4JI0I 1K47A 2V8PA 5EL9A 1OYSA 4FW3A 4U3DA 1WUUA 4LFAE 2NN6E 5C0XC 1Z0VA 4Z7YA 4DPXA 3WU5A 3JAMQ 4LF4E 2C39B 4DV7I 1KVKA 4JI6I 4DR2E 4FW9A 3M6AA 2V34A 3UHMA 3ZZ0A 2CVEA 2C38A 2UU9I 4X64E 4J3DA 1YH8A 3PYFA 3CWVA 2R42A 2WP8A 2VQFI 1B62A 1N36E 3WU3A 2DEJA 2BA0G 2UUBI 2Z5EA 2GQ0A 2GO3A 4UT4A 4IZKA 3M85D 1Y5YA 4JI4I 4DV2I 2CG9A 4WUBA 5DNXA 1HR0E 4WUCA 3Q1QA 2DEIA 2V2ZA 2HKEA 1H7UA 2J7KA 5C0XD 5LMNE 3ZKDA 4OO1F 4LFAI 1Z0CA 2BA1D 2R3VA 1UDSA 4JI8E 4LF4I 3PYGA 4IFDA 1Z0BA 4LCGA 4JI7E 2V2VA 4LF7I 2GS8A 2BM0A 1MG7A 4DR2I 1D6TA 4MYUA 4YHHE 4JI5E 3CDIA 5L3JA 4MQYA 4MDTA 2F1DA 3WU6A 1XHKA 2PNZB 4BA1B 1H74A 4X64I 4IFDE 1XMQE 1N0VC 2PO0A 4FW4A 1ZXNA 1H72C 3B4TA 2BM1A 5C0XB 2Z5BB 3J81Q 4OZEA 1OYPA 3P3CA 1HR0I 1Y60A 3ZKBA 4DV1E 4NXNE 4OO1C 5GMDA 1N33E 2PO1A 1FNMA 3L7ZB 4LF5E 4DV0E 5JEAA 4DR4E 2E5LE 1VI7A 2HKJA 2HHHE 2A2DA 4MU3A 4JI8I 4UTGA 5DNLA 4QNJA 4JI7I 4DR7I 5JEAE 3H1CA 1HK7A 4IZJD 4HACB 4YHHI 1PIEA 4MU0A 2Q2EB 3ZM7A 1XMQI 1NHHA 4X66E 5K36E 3P3GA 4URLA 5IT9Q 1RREA 1Z0WA 1ZM2A 4B3SE 4XTJA 2NN6A 4JI4E 3B78A 2CZ9A 4OO1D 3U1YA 4FN5A 1R6LA 2HFSA 4DV1I 4NXNI 4FW5A 1N33I 5A2QC 1IBLE 1HNWE 2O1UA 4LF5I 4DV0I 2HK2A 4DR4I 2E5LI 5FLXQ 4LFCE 2HHHI 3HJCA 4IZJB 1J5EE 1USVA 3PS1A 2NPFA 1UDQA 2JEAA 4JG4A 4DPUA 4LF7E 2BA0D 1UDNA 2BR2B 2WNRA 4DV4E 1P42A 2JEBB 4LF9E 4DR3E 3J80Q 4OO1B 1Y6ZA 1RHYA 1IBKE 4DXLA 4X66I 2AJ4A 4GQUA 4B3RE 2C37B 4DV3E 3QT8A 2IOPA 4B3SI 3Q6MA 1B63A 1EA6A 1VISA 2Z5CB 4X65E 2VQEE 2V2QA 4MU4A 4QNKA 4I3HA 4EMDA 1IBLI 1HNWI 1KIJA 1A6FA 2NN6F 4LFCI 1UEKA 1XMOE 2ZBKB 1OJ4A 3GMEA 4BA1A 1J5EI 2C38B 4K0KE 3OTOE 1N0UA 3ZZTA 4DR7E 1FWLA 1Z0TA 3QT6A 4DU8A 4FWDA 2PO2A 4NBQA 4AIMA 4DV4I 4FW6A 4LF9I 4DR3I 2X7IA 2HK3A 3LPSA 4IZKB 3PS3A 1IBMI 1IBKI 4KQVA 4PU9A 4B3RI 2UXDE 5C0XE 4LF8I 4DV3I 5LMUE 4OX9E 4HY1A 1ELOA 4OKGA 4U3BA 4X65I 2VQEI 2NN6C 1ZM9A 2IESA 2E1RA 1PVGA 1HNXI 2EFGA 4B3TE 1Z59A 3LTOA 4LCFA 5JEAD 4DV5E 1XMOI 1DARA 4HYMA 4JV5E 3K1JA 4K0KI 4R1FA 4USKA 3OTOI 4P52A 1ZM3A 5K36A 3GCMA 2IOQA 4LCHA 5BR8E 1FJGE 4DR1E 4DR5E 1FI4A 4AM3A 4IFDF 5IWAI 2JE6B 1NHJA 4DUZE 3P76A 3LNUA 2ZM6E 2ZITA 5EKWA 5FLXC 2UUAI 1MU5A 3DD6A 3CDJA 4JI3I 2UXDI 4GKKI 3JAMC 3D4JA 5LMUI 4BA2B 4OX9I 2J65A 2CGEA 4AIDA 4DUYE 5FWKA 4YY3E 2NN6D 4Z7CA 5GMEA 2C39A 3T1HI 3GONA 2WW4A 1KTVA 1XNRE 4ISAA 5ELWA 2PNMA 2BR2A 1U2RA 1FKAE 4LFBE 4B3TI 3T1YE 2JEBA 4DV5I 1Z5BA 4X62E 4JV5I 1YHCA 3KRNA 1E3PA 3QT5A 2JT2A 2C37A 5JEAF 4IFDC 4N3OA 5DRRA 3PYEA 5DRQA 4KHPE 3P3EA 5BR8I 1UDOA 1FJGI 4DR1I 1I94E 4DU7A 1PKPA 1Z5CA 2UUCI 4LOMA 4IS9A 4DR5I 3M7NG 4OO1E 1Z5AA 2Z5CA 4DUZI 2ZM6I 1IBME 2NN6B 4WUDA 5LL6R 3PYDA 3F0NA 1N34I 5K36F 3HKMA 4LF8E 4FWHA 4DUYI 4YY3I 4LF6I 5A2QQ 1NHIA 3PS2A 3H4LA 1XNRI 1OYRA 1HNXE 3P06A 1HNZI 2JEAB 4LFBI 3T1YI 1S4EA 4JI2I 2O3ZA 2PNZA 3Q6NA 4X62I 2WNRB 5JEAC 3PRYA 4IFDD 2VF3A 4DR6E 4M1KA 3J81C 3U1KA 2WP8B 4FW7A 4ZVIA 4NXME 4DV6E 5C0XA 2IERA 2Z5BA 1XNQE 4KHPI 2VESA 4AQYE 5DRPA 1NZ0A 1I94I 5K36C 2O1WA 2XEXA 2PNLA 5IWAE 1N32E 4MYTA 3M85G 2UUAE 3L7ZA 4HXZA 1BKNA 4JI3E 4GKKE 2UXCE 2O1TA 1KKHA 1R6MA 4B3ME 1Z0EA 3HULA 3T1HE 4PRXA 1MX0A
chains in the Genus database with same CATH topology

5DNLA 1RHYA 4QNJA 4MU4A 5DNXA 4GQUA 5EL9A 4QNKA 4MU3A 4MU1A 4LOMA 2AE8A 5EKWA 2F1DA 4LPFA 5ELWA 4MU0A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5DNL A;  1RHY A;  4QNJ A;  4MU4 A;  5DNX A;  4GQU A;  5EL9 A;  4QNK A;  4MU3 A;  4MU1 A;  4LOM A;  2AE8 A;  5EKW A;  2F1D A;  4LPF A;  5ELW A;  4MU0 A; 
#chains in the Genus database with same CATH topology
 4JI1 E;  2UXB E;  1USU A;  2BA1 G;  1H7S A;  4GKJ E;  1EI1 A;  4IFD B;  2GO4 A;  4FWG A;  4HAC A;  2F4V E;  1N36 I;  4MU1 A;  2A2C A;  2PO2 B;  2JE6 A;  2LJP A;  4PRV A;  5IT9 C;  1H73 A;  1S16 A;  4DPT A;  4ED4 A;  3J7A M;  4DR6 I;  4JYA E;  2PO0 B;  4JI0 E;  4NXM I;  5K36 D;  4DV6 I;  2AE8 A;  2OI2 A;  1XNQ I;  2UUC E;  4BA2 A;  3J7A G;  4AQY I;  5LMN I;  3GLL A;  1N32 I;  2HFU A;  1QZR A;  4DPY A;  1N34 E;  5DRO A;  3V5R A;  1XXE A;  3NZK A;  1Y4S A;  4DV7 E;  5C0X F;  1E3H A;  2PO1 B;  4JI6 E;  2UXC I;  4IZJ A;  4B3M I;  2X36 A;  2UU9 E;  5JEA B;  1ZM4 A;  3WU4 A;  4LF6 E;  4LPF A;  4JI1 I;  4JI5 I;  3B8H A;  3V2U C;  2UXB I;  1HNZ E;  4GKJ I;  1Y4U A;  2VQF E;  3J80 C;  2F4V I;  2O1V A;  4DPW A;  4JI2 E;  3M7N D;  2BV3 A;  4RPF A;  4USM A;  2UUB E;  5K36 B;  4OO1 A;  3K85 A;  4DV2 E;  3B82 A;  1Z0G A;  1FWK A;  1ZXM A;  4JYA I;  3ZZU A;  4P7A A;  3K17 A;  1RR9 A;  3QT7 A;  4JI0 I;  1K47 A;  2V8P A;  5EL9 A;  1OYS A;  4FW3 A;  4U3D A;  1WUU A;  4LFA E;  2NN6 E;  5C0X C;  1Z0V A;  4Z7Y A;  4DPX A;  3WU5 A;  3JAM Q;  4LF4 E;  2C39 B;  4DV7 I;  1KVK A;  4JI6 I;  4DR2 E;  4FW9 A;  3M6A A;  2V34 A;  3UHM A;  3ZZ0 A;  2CVE A;  2C38 A;  2UU9 I;  4X64 E;  4J3D A;  1YH8 A;  3PYF A;  3CWV A;  2R42 A;  2WP8 A;  2VQF I;  1B62 A;  1N36 E;  3WU3 A;  2DEJ A;  2BA0 G;  2UUB I;  2Z5E A;  2GQ0 A;  2GO3 A;  4UT4 A;  4IZK A;  3M85 D;  1Y5Y A;  4JI4 I;  4DV2 I;  2CG9 A;  4WUB A;  5DNX A;  1HR0 E;  4WUC A;  3Q1Q A;  2DEI A;  2V2Z A;  2HKE A;  1H7U A;  2J7K A;  5C0X D;  5LMN E;  3ZKD A;  4OO1 F;  4LFA I;  1Z0C A;  2BA1 D;  2R3V A;  1UDS A;  4JI8 E;  4LF4 I;  3PYG A;  4IFD A;  1Z0B A;  4LCG A;  4JI7 E;  2V2V A;  4LF7 I;  2GS8 A;  2BM0 A;  1MG7 A;  4DR2 I;  1D6T A;  4MYU A;  4YHH E;  4JI5 E;  3CDI A;  5L3J A;  4MQY A;  4MDT A;  2F1D A;  3WU6 A;  1XHK A;  2PNZ B;  4BA1 B;  1H74 A;  4X64 I;  4IFD E;  1XMQ E;  1N0V C;  2PO0 A;  4FW4 A;  1ZXN A;  1H72 C;  3B4T A;  2BM1 A;  5C0X B;  2Z5B B;  3J81 Q;  4OZE A;  1OYP A;  3P3C A;  1HR0 I;  1Y60 A;  3ZKB A;  4DV1 E;  4NXN E;  4OO1 C;  5GMD A;  1N33 E;  2PO1 A;  1FNM A;  3L7Z B;  4LF5 E;  4DV0 E;  5JEA A;  4DR4 E;  2E5L E;  1VI7 A;  2HKJ A;  2HHH E;  2A2D A;  4MU3 A;  4JI8 I;  4UTG A;  5DNL A;  4QNJ A;  4JI7 I;  4DR7 I;  5JEA E;  3H1C A;  1HK7 A;  4IZJ D;  4HAC B;  4YHH I;  1PIE A;  4MU0 A;  2Q2E B;  3ZM7 A;  1XMQ I;  1NHH A;  4X66 E;  5K36 E;  3P3G A;  4URL A;  5IT9 Q;  1RRE A;  1Z0W A;  1ZM2 A;  4B3S E;  4XTJ A;  2NN6 A;  4JI4 E;  3B78 A;  2CZ9 A;  4OO1 D;  3U1Y A;  4FN5 A;  1R6L A;  2HFS A;  4DV1 I;  4NXN I;  4FW5 A;  1N33 I;  5A2Q C;  1IBL E;  1HNW E;  2O1U A;  4LF5 I;  4DV0 I;  2HK2 A;  4DR4 I;  2E5L I;  5FLX Q;  4LFC E;  2HHH I;  3HJC A;  4IZJ B;  1J5E E;  1USV A;  3PS1 A;  2NPF A;  1UDQ A;  2JEA A;  4JG4 A;  4DPU A;  4LF7 E;  2BA0 D;  1UDN A;  2BR2 B;  2WNR A;  4DV4 E;  1P42 A;  2JEB B;  4LF9 E;  4DR3 E;  3J80 Q;  4OO1 B;  1Y6Z A;  1RHY A;  1IBK E;  4DXL A;  4X66 I;  2AJ4 A;  4GQU A;  4B3R E;  2C37 B;  4DV3 E;  3QT8 A;  2IOP A;  4B3S I;  3Q6M A;  1B63 A;  1EA6 A;  1VIS A;  2Z5C B;  4X65 E;  2VQE E;  2V2Q A;  4MU4 A;  4QNK A;  4I3H A;  4EMD A;  1IBL I;  1HNW I;  1KIJ A;  1A6F A;  2NN6 F;  4LFC I;  1UEK A;  1XMO E;  2ZBK B;  1OJ4 A;  3GME A;  4BA1 A;  1J5E I;  2C38 B;  4K0K E;  3OTO E;  1N0U A;  3ZZT A;  4DR7 E;  1FWL A;  1Z0T A;  3QT6 A;  4DU8 A;  4FWD A;  2PO2 A;  4NBQ A;  4AIM A;  4DV4 I;  4FW6 A;  4LF9 I;  4DR3 I;  2X7I A;  2HK3 A;  3LPS A;  4IZK B;  3PS3 A;  1IBM I;  1IBK I;  4KQV A;  4PU9 A;  4B3R I;  2UXD E;  5C0X E;  4LF8 I;  4DV3 I;  5LMU E;  4OX9 E;  4HY1 A;  1ELO A;  4OKG A;  4U3B A;  4X65 I;  2VQE I;  2NN6 C;  1ZM9 A;  2IES A;  2E1R A;  1PVG A;  1HNX I;  2EFG A;  4B3T E;  1Z59 A;  3LTO A;  4LCF A;  5JEA D;  4DV5 E;  1XMO I;  1DAR A;  4HYM A;  4JV5 E;  3K1J A;  4K0K I;  4R1F A;  4USK A;  3OTO I;  4P52 A;  1ZM3 A;  5K36 A;  3GCM A;  2IOQ A;  4LCH A;  5BR8 E;  1FJG E;  4DR1 E;  4DR5 E;  1FI4 A;  4AM3 A;  4IFD F;  5IWA I;  2JE6 B;  1NHJ A;  4DUZ E;  3P76 A;  3LNU A;  2ZM6 E;  2ZIT A;  5EKW A;  5FLX C;  2UUA I;  1MU5 A;  3DD6 A;  3CDJ A;  4JI3 I;  2UXD I;  4GKK I;  3JAM C;  3D4J A;  5LMU I;  4BA2 B;  4OX9 I;  2J65 A;  2CGE A;  4AID A;  4DUY E;  5FWK A;  4YY3 E;  2NN6 D;  4Z7C A;  5GME A;  2C39 A;  3T1H I;  3GON A;  2WW4 A;  1KTV A;  1XNR E;  4ISA A;  5ELW A;  2PNM A;  2BR2 A;  1U2R A;  1FKA E;  4LFB E;  4B3T I;  3T1Y E;  2JEB A;  4DV5 I;  1Z5B A;  4X62 E;  4JV5 I;  1YHC A;  3KRN A;  1E3P A;  3QT5 A;  2JT2 A;  2C37 A;  5JEA F;  4IFD C;  4N3O A;  5DRR A;  3PYE A;  5DRQ A;  4KHP E;  3P3E A;  5BR8 I;  1UDO A;  1FJG I;  4DR1 I;  1I94 E;  4DU7 A;  1PKP A;  1Z5C A;  2UUC I;  4LOM A;  4IS9 A;  4DR5 I;  3M7N G;  4OO1 E;  1Z5A A;  2Z5C A;  4DUZ I;  2ZM6 I;  1IBM E;  2NN6 B;  4WUD A;  5LL6 R;  3PYD A;  3F0N A;  1N34 I;  5K36 F;  3HKM A;  4LF8 E;  4FWH A;  4DUY I;  4YY3 I;  4LF6 I;  5A2Q Q;  1NHI A;  3PS2 A;  3H4L A;  1XNR I;  1OYR A;  1HNX E;  3P06 A;  1HNZ I;  2JEA B;  4LFB I;  3T1Y I;  1S4E A;  4JI2 I;  2O3Z A;  2PNZ A;  3Q6N A;  4X62 I;  2WNR B;  5JEA C;  3PRY A;  4IFD D;  2VF3 A;  4DR6 E;  4M1K A;  3J81 C;  3U1K A;  2WP8 B;  4FW7 A;  4ZVI A;  4NXM E;  4DV6 E;  5C0X A;  2IER A;  2Z5B A;  1XNQ E;  4KHP I;  2VES A;  4AQY E;  5DRP A;  1NZ0 A;  1I94 I;  5K36 C;  2O1W A;  2XEX A;  2PNL A;  5IWA E;  1N32 E;  4MYT A;  3M85 G;  2UUA E;  3L7Z A;  4HXZ A;  1BKN A;  4JI3 E;  4GKK E;  2UXC E;  2O1T A;  1KKH A;  1R6M A;  4B3M E;  1Z0E A;  3HUL A;  3T1H E;  4PRX A;  1MX0 A; 
#chains in the Genus database with same CATH homology
 5DNL A;  1RHY A;  4QNJ A;  4MU4 A;  5DNX A;  4GQU A;  5EL9 A;  4QNK A;  4MU3 A;  4MU1 A;  4LOM A;  2AE8 A;  5EKW A;  2F1D A;  4LPF A;  5ELW A;  4MU0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4QNKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations