The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
300
|
structure length |
300
|
Chain Sequence |
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNSAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Bacterial Deacetylase LpxC Bound to the Nucleotide Reaction Product Reveals Mechanisms of Oxyanion Stabilization and Proton Transfer.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Escherichia coli
|
| molecule keywords |
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
|
| total genus |
91
|
| structure length |
300
|
| sequence length |
300
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.5.1.-: |
| pdb deposition date | 2013-08-23 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | lpxc deacetylase, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | lpxc deacetylase, domain 1 | lpxc deacetylase, domain 2 |
#chains in the Genus database with same CATH superfamily 4J3D A; 2VES A; 3PS3 A; 4U3B A; 1YHC A; 4IS9 A; 4FW7 A; 2JT2 A; 4MDT A; 4OKG A; 5DRO A; 5DRR A; 2GO4 A; 4FW4 A; 4OZE A; 4ISA A; 1YH8 A; 4LCH A; 2J65 A; 3U1Y A; 2IES A; 4U3D A; 4FW6 A; 4LCF A; 5DRP A; 4LCG A; 3NZK A; 3P3E A; 1XXE A; 2IER A; 1P42 A; 3P3C A; 3P3G A; 2O3Z A; 3P76 A; 4MQY A; 2GO3 A; 4FW5 A; 3PS2 A; 3PS1 A; 3UHM A; 4FW3 A; 5DRQ A; #chains in the Genus database with same CATH topology 1FKA E; 2AJ4 A; 3OTO E; 2UXD I; 5C0X A; 4DR6 I; 3Q6M A; 1XNQ E; 4B3T E; 1E3H A; 1N0V C; 2UUB I; 2IES A; 4JI7 I; 4X64 E; 4GKK E; 1HR0 I; 1P42 A; 4DV1 I; 1N34 I; 4FWD A; 4B3R I; 4MQY A; 4IZJ B; 2Z5C B; 1USV A; 2X36 A; 4FN5 A; 4BA1 B; 4DV6 E; 4JI4 E; 4I3H A; 4DV5 E; 1Z0W A; 4DPX A; 2UU9 I; 3CDI A; 3M85 G; 1IBM E; 4J3D A; 4IZK A; 4U3B A; 3JAM C; 1OYS A; 4IS9 A; 2XEX A; 3CWV A; 4B3M E; 4X62 I; 1VIS A; 2JE6 B; 2UXD E; 2NN6 F; 4UT4 A; 4DR6 E; 1RRE A; 2OI2 A; 2O1T A; 4DV3 I; 3Q1Q A; 4LCG A; 3ZM7 A; 3HKM A; 2UUB E; 1KVK A; 2HKE A; 3P76 A; 4JI7 E; 1QZR A; 3ZZT A; 2NN6 B; 4FW5 A; 4HAC B; 1HR0 E; 4DV1 E; 2CG9 A; 4B3R E; 2VES A; 3PS3 A; 5DNL A; 1XMQ I; 5K36 E; 5DNX A; 2UU9 E; 3QT8 A; 4OZE A; 1OJ4 A; 3HJC A; 5K36 C; 4IZJ A; 2Z5C A; 4NXM I; 4JI3 I; 2GQ0 A; 3LNU A; 4IZJ D; 2AE8 A; 3H4L A; 4X62 E; 4LF7 I; 1XXE A; 2WW4 A; 4DV3 E; 4LF9 I; 4DU7 A; 2PNZ B; 4DXL A; 2PO1 B; 1FI4 A; 3Q6N A; 3WU3 A; 2VQE I; 3LPS A; 1Z0V A; 2JE6 A; 2ZM6 I; 1U2R A; 3PS1 A; 4AQY E; 4DV0 I; 3V5R A; 1DAR A; 4JV5 I; 4OO1 E; 4YY3 I; 4FW4 A; 4DR4 I; 1XMQ E; 3H1C A; 2NN6 A; 4UTG A; 3WU6 A; 1B62 A; 5DRP A; 4QNK A; 5A2Q C; 1ZM4 A; 4YHH I; 4NXM E; 3P3G A; 2IOQ A; 1ELO A; 4DR5 I; 1IBL I; 4LF7 E; 2PNM A; 4LF9 E; 2VQE E; 2ZM6 E; 3F0N A; 4DV0 E; 2VF3 A; 4JV5 E; 2PO1 A; 3J80 C; 1XNR I; 4JI0 I; 4YY3 E; 4DPU A; 2UXB I; 1N33 I; 4Z7C A; 4DR4 E; 4USK A; 2ZBK B; 1Y5Y A; 2J7K A; 1ZM3 A; 4WUC A; 5IT9 Q; 4YHH E; 4USM A; 4QNJ A; 2BM1 A; 4FW3 A; 3GON A; 5LMN I; 3K17 A; 1Z0C A; 4P52 A; 4DR5 E; 1WUU A; 1IBL E; 5K36 F; 1Z5B A; 1MX0 A; 1Z0B A; 1MG7 A; 4LCH A; 3ZKD A; 4LF6 I; 3K1J A; 4JI5 I; 3PYE A; 5FLX C; 4PRV A; 4M1K A; 5K36 B; 1UEK A; 2A2C A; 2EFG A; 2IER A; 1XNR E; 4JI0 E; 1N33 E; 2GO3 A; 2NPF A; 2WP8 B; 2V2Z A; 3U1Y A; 4X66 I; 5IWA I; 4WUB A; 1OYR A; 3B8H A; 5C0X E; 3PYG A; 4R1F A; 5LMN E; 5C0X C; 1Z59 A; 4MU4 A; 4X65 I; 1ZM2 A; 2LJP A; 1NHI A; 4LF6 E; 2BA0 D; 2E5L I; 4JI5 E; 4BA2 B; 3KRN A; 1XMO I; 4IFD E; 3ZKB A; 4KHP I; 4FW9 A; 2IOP A; 3PS2 A; 4NXN I; 1EI1 A; 4IFD C; 1N34 E; 3WU5 A; 5K36 A; 2Q2E B; 3PYD A; 3U1K A; 5K36 D; 3QT6 A; 4X66 E; 1PVG A; 5IWA E; 2BA0 G; 4EMD A; 2WP8 A; 3K85 A; 1HNX I; 1H74 A; 1R6M A; 4B3S I; 2E1R A; 1NZ0 A; 4LF5 I; 1D6T A; 2JEB B; 2BV3 A; 1N0U A; 4DPW A; 4X65 E; 4DUZ I; 2X7I A; 2BM0 A; 1K47 A; 2E5L E; 2WNR B; 1XMO E; 4KHP E; 2F4V I; 4ZVI A; 2HK3 A; 2V8P A; 4OKG A; 3QT7 A; 4NXN E; 1Z5C A; 3J81 Q; 1BKN A; 1UDQ A; 2R42 A; 4BA2 A; 2PNL A; 1NHJ A; 1RR9 A; 4OO1 C; 1FNM A; 4PRX A; 2UUA I; 2CGE A; 4U3D A; 1HK7 A; 1A6F A; 4DR1 I; 3NZK A; 3WU4 A; 2HFU A; 3GLL A; 1HNX E; 4JI3 E; 4B3S E; 4DPT A; 4LF5 E; 4LFA I; 4PU9 A; 5LL6 R; 1PIE A; 4DR7 I; 5EKW A; 4DUZ E; 4MDT A; 2JT2 A; 4LF8 I; 5DRR A; 2JEB A; 2R3V A; 1PKP A; 3B82 A; 2NN6 E; 2F4V E; 2GS8 A; 1HNW I; 2WNR A; 4JI6 I; 4LCF A; 2NN6 C; 1Z5A A; 2HHH I; 5GME A; 3T1H I; 3J7A M; 3P06 A; 4URL A; 4HY1 A; 4FWH A; 4AIM A; 3GME A; 2A2D A; 2UUA E; 2V2V A; 4MU1 A; 4IFD F; 4HXZ A; 5L3J A; 1Z0E A; 4DR1 E; 1N32 I; 4GQU A; 3GCM A; 1ZM9 A; 4DPY A; 5JEA E; 1Y60 A; 1IBK I; 4LFA E; 4DU8 A; 3B4T A; 5JEA C; 1UDO A; 4DR7 E; 4NBQ A; 3M7N D; 1Z0T A; 4LF8 E; 1HNZ I; 3D4J A; 2C39 B; 5ELW A; 4DV4 I; 5IT9 C; 1S4E A; 3CDJ A; 4JI2 I; 4LFB I; 1VI7 A; 2C38 B; 5FLX Q; 4P7A A; 1OYP A; 1HNW E; 4JI6 E; 2UXB E; 3T1Y I; 2HHH E; 1KKH A; 3T1H E; 1R6L A; 1USU A; 2C37 B; 4LFC I; 2CZ9 A; 4DV7 I; 2HK2 A; 3M7N G; 2DEJ A; 1N32 E; 4OO1 F; 3QT5 A; 2UXC I; 4WUD A; 3M85 D; 2CVE A; 5C0X D; 1IBK E; 2Z5B A; 3JAM Q; 1J5E I; 3LTO A; 1Y4S A; 2BR2 B; 4MU3 A; 2O1U A; 4OO1 B; 2ZIT A; 2UUC I; 2PO0 B; 1HNZ E; 2O3Z A; 4IFD A; 3PYF A; 4K0K I; 4AID A; 4DV4 E; 4JI2 E; 2HKJ A; 4IFD D; 4LFB E; 3B78 A; 1H72 C; 2C39 A; 1FWL A; 4LPF A; 3T1Y E; 1ZXM A; 2V2Q A; 4LFC E; 2GO4 A; 4DV7 E; 2C38 A; 4JI1 I; 5LMU I; 2JEA A; 1N36 I; 4DR2 I; 2C37 A; 2DEI A; 4LOM A; 2UXC E; 2O1V A; 4JYA I; 4KQV A; 2O1W A; 1H7S A; 1KIJ A; 1XHK A; 1ZXN A; 1J5E E; 4GKJ I; 3P3C A; 1MU5 A; 3ZZU A; 1EA6 A; 1RHY A; 2UUC E; 2BR2 A; 4AM3 A; 5DRQ A; 5JEA F; 1FJG I; 4OO1 A; 4K0K E; 4FW7 A; 1I94 I; 4OO1 D; 2PO0 A; 2VQF I; 4BA1 A; 2HFS A; 5JEA B; 4FW6 A; 4JI1 E; 5LMU E; 1B63 A; 1N36 E; 3P3E A; 4FWG A; 2Z5E A; 4DR2 E; 2BA1 D; 3HUL A; 4JI8 I; 1Y4U A; 3V2U C; 2V34 A; 4JYA E; 2PO2 B; 3L7Z B; 4RPF A; 4DV2 I; 3DD6 A; 4OX9 I; 3J81 C; 4MYU A; 5A2Q Q; 4GKJ E; 1H73 A; 1YHC A; 5DRO A; 5C0X F; 4LF4 I; 1UDS A; 1KTV A; 3M6A A; 1FJG E; 1YH8 A; 4HAC A; 4DUY I; 2BA1 G; 1I94 E; 2NN6 D; 1H7U A; 2VQF E; 2F1D A; 5BR8 I; 3ZZ0 A; 1S16 A; 5C0X B; 3J80 Q; 4DR3 I; 5EL9 A; 4MU0 A; 4ED4 A; 4AQY I; 4Z7Y A; 3OTO I; 2Z5B B; 5GMD A; 3UHM A; 4JI8 E; 1Y6Z A; 5FWK A; 5JEA A; 1XNQ I; 4B3T I; 1E3P A; 1Z0G A; 4HYM A; 1UDN A; 4N3O A; 4DV2 E; 4OX9 E; 5JEA D; 3J7A G; 1NHH A; 2PNZ A; 4X64 I; 4IFD B; 2PO2 A; 3L7Z A; 4GKK I; 2J65 A; 4LF4 E; 4IZK B; 4DV6 I; 4JI4 I; 4DUY E; 4DV5 I; 4JG4 A; 1IBM I; 4XTJ A; 2JEA B; 5BR8 E; 4MYT A; 4DR3 E; 4B3M I; 1FWK A; 4ISA A; 3PRY A; #chains in the Genus database with same CATH homology 4J3D A; 2VES A; 3PS3 A; 4U3B A; 1YHC A; 4IS9 A; 4FW7 A; 2JT2 A; 4MDT A; 4OKG A; 5DRO A; 5DRR A; 2GO4 A; 4FW4 A; 4OZE A; 4ISA A; 1YH8 A; 4LCH A; 2J65 A; 3U1Y A; 2IES A; 4U3D A; 4FW6 A; 4LCF A; 5DRP A; 4LCG A; 3NZK A; 3P3E A; 1XXE A; 2IER A; 1P42 A; 3P3C A; 3P3G A; 2O3Z A; 3P76 A; 4MQY A; 2GO3 A; 4FW5 A; 3PS2 A; 3PS1 A; 3UHM A; 4FW3 A; 5DRQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
