5DNLA

Crystal structure of igpd from pyrococcus furiosus in complex with (s)-c348
Total Genus 58
204060801001201401600102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
176
structure length
176
Chain Sequence
MRRTTKETDIIVEIGKKGEIKTNDLILDHMLTAFAFYLGKDMRITATYDLRHHLWEDIGITLGEALRENLPEKFTRFGNAIMPMDDALVLVSVDISNRPYANVDVNIKDAEEGFAVSLLKEFVWGLARGLRATIHIKQLSGENAHHIVEAAFKGLGMALRVATKESERVESTKGVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (8-14)S1 (2-5)TI1 (5-8)AH2 (51-69)TII1 (13-16)TII2 (111-114)AH3 (116-130)TVIII1 (71-74)O1 (75-77)S5 (77-84)S6 (87-94)O2 (94-96)AH4 (144-163)O3 (169-171)TII'1 (84-87)S8 (133-140)S7 (100-104)TVIII2 (107-110)TI2 (171-174)S3 (20-21)S4 (42-48)AH1 (25-38)Updating...
connected with : NaN
molecule tags Lyase
source organism Pyrococcus furiosus
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
molecule keywords Imidazoleglycerol-phosphate dehydratase
total genus 58
structure length 176
sequence length 176
chains with identical sequence B, C
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnlA02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnlA01
4GQUA 5EL9A 4MU0A 4LPFA 4MU3A 4MU1A 4MU4A 4QNKA 5DNLA 4LOMA 2F1DA 2AE8A 4QNJA 5EKWA 1RHYA 5ELWA 5DNXA
chains in the Genus database with same CATH superfamily
2GO3A 1N33E 4FWGA 4LPFA 1KKHA 3DD6A 2Z5BA 4IFDD 4X65E 4AQYE 3ZZUA 2O1UA 4FN5A 3GLLA 4YY3E 4FW9A 3JAMQ 5JEAB 4DV0I 4NXME 1Y6ZA 2HKEA 4XTJA 2V8PA 5IT9C 1ZM4A 2C39A 1HNZE 5LL6R 1OYSA 5K36C 5C0XF 4OO1F 2UXBI 4AIMA 3V2UC 1NHHA 5FLXQ 3U1KA 1HK7A 2VF3A 3K17A 2JEAA 2JE6B 4MYTA 3WU4A 2GS8A 4JI1E 1A6FA 4AQYI 4JI0E 3J7AG 2O3ZA 1OYPA 5JEAC 4LF6I 4IZJD 1FKAE 1Y4SA 3PS1A 1NZ0A 3HULA 4DR6E 4USMA 1UDQA 4PU9A 1HNZI 4DPUA 3P76A 4OO1A 4LF7E 1HNWE 1RR9A 5K36F 4DV1E 4UT4A 1ZM9A 2GQ0A 5A2QQ 4QNKA 4FW4A 2BA1G 3J81C 2UU9I 3Q1QA 4JI1I 4JI0I 4J3DA 3T1YE 4JI4E 4LCFA 4BA1B 4DR4E 4DV4E 5JEAF 1FI4A 4X62I 4DR6I 1N0UA 4DXLA 3J80Q 1HNWI 4DV3I 2HHHI 4DU7A 4IZKA 4WUBA 4DV1I 2Z5EA 3P3EA 1HR0E 5GMEA 3PS2A 4NXNI 1UDNA 2PNLA 2CVEA 2C38B 4DR3E 1N32E 4K0KE 3T1YI 4JI4I 1XNRE 5L3JA 4DR4I 4MYUA 2AE8A 1BKNA 4IFDB 3PYEA 3M85G 4MU0A 5FWKA 4KQVA 4JI5I 2R3VA 1E3PA 1N0VC 4DV6E 4B3TE 4OKGA 2IOPA 2BR2B 1PIEA 1EI1A 2UUBE 4LOMA 1Z0CA 1UDOA 1N32I 4K0KI 1XMOE 4IFDC 1XNRI 2BM0A 1UDSA 4P52A 5IT9Q 4GKJE 4HYMA 4HACA 3HKMA 4LCGA 3M85D 2DEIA 3B78A 4IZJB 4MU3A 4MU1A 5EL9A 1H73A 4DV6I 4DPYA 4B3TI 4RPFA 1B62A 1DARA 3M6AA 2PO0B 1H7SA 2UXBE 2BM1A 3UHMA 2C37B 5DROA 4DR1E 3GCMA 2JT2A 2UXDE 4R1FA 1XMOI 4I3HA 1YH8A 4LF6E 4IFDF 4GKJI 2VQEE 2PNZB 1Z59A 2Z5CB 4LF9E 1D6TA 1H72C 3B82A 2NN6E 1KVKA 3M7NG 4B3SE 2IERA 2WP8A 4FW5A 2R42A 2JEBA 4LFBE 4DR1I 2WW4A 1OJ4A 1EA6A 2UXDI 2UU9E 2PNMA 3ZZ0A 4USKA 2PO1A 1Z0EA 1E3HA 1VI7A 3PYDA 2VESA 4X66E 2VQEI 4X62E 2V2QA 4DV2E 2CGEA 4LF9I 1Y4UA 4FWHA 2NN6D 5C0XA 2F4VE 4FW6A 3M7ND 3QT8A 2E5LI 3QT7A 4B3SI 4DV3E 2CZ9A 2HFSA 4ZVIA 2HHHE 4LFBI 2PO2B 1MG7A 4NXNE 1Y5YA 1Z0GA 2F1DA 2UXCE 4DUYE 4GQUA 1K47A 3F0NA 1IBMI 4BA2A 4FW7A 4IZJA 4X66I 4LFAE 1U2RA 4X64I 2ZBKB 4DV2I 3L7ZB 4LF5E 2F4VI 4DV7E 3ZM7A 2PO0A 4JI5E 4LF8I 5K36A 1MU5A 1FWLA 2HKJA 4QNJA 2UUCI 3P06A 3ZKBA 2BA1D 3K1JA 2O1WA 1YHCA 4U3DA 2Z5BB 3ZZTA 1XNQE 2UXCI 4DUYI 1RREA 2BA0G 1H74A 5JEAA 5BR8I 3PYGA 3CDJA 3ZKDA 4LFAI 4M1KA 2A2DA 4MQYA 5IWAE 2UUAE 4LF5I 3NZKA 4DV7I 2C39B 2X7IA 2E1RA 2OI2A 3Q6MA 1N34I 4DUZE 4JI6I 1R6MA 2ZM6I 2JE6A 2GO4A 2JEAB 1Z0WA 3KRNA 4PRVA 1XNQI 4FW3A 1B63A 3B4TA 2VQFE 3U1YA 3K85A 5IWAI 2UUAI 2O1VA 4JI8I 2AJ4A 5GMDA 1H7UA 1USUA 3GONA 4OO1B 4DUZI 3J80C 2NN6B 1RHYA 4EMDA 5LMNI 5DRQA 3CWVA 4GKKE 1ZXMA 4DR5I 3LPSA 4UTGA 4BA1A 2VQFI 1PKPA 4JI7E 5C0XE 2V34A 1Z5AA 3B8HA 4OO1E 1IBKE 1KIJA 1XXEA 4JI3E 1XMQE 2NN6C 4NBQA 2E5LE 4IZKB 2O1TA 3J81Q 4N3OA 1KTVA 2C38A 4GKKI 3HJCA 3H4LA 1Y60A 3PRYA 4IFDA 1UEKA 4OX9I 1VISA 4DU8A 4JI7I 1IBME 4P7AA 5C0XD 4X64E 1HNXE 4OO1D 1IBKI 5K36E 4JI3I 1XMQI 3LTOA 1FJGE 4IS9A 4FWDA 4LF8E 2NN6F 1FNMA 2BR2A 5EKWA 4LFCE 2CG9A 4URLA 4ISAA 3H1CA 2UUCE 1N33I 3WU5A 4LF4E 3V5RA 4X65I 4B3RE 5JEAE 4DR2E 1IBLE 3WU6A 4MU4A 1XHKA 4YY3I 1NHJA 1Z0VA 4NXMI 4JI2E 3OTOE 5BR8E 1Z0TA 4HACB 1HNXI 4JYAE 5K36D 3P3GA 3JAMC 4HY1A 2WNRB 4OZEA 1FJGI 1MX0A 2J7KA 5DNXA 1ZM2A 2NN6A 1N34E 4LFCI 4YHHE 4JI6E 4HXZA 2ZM6E 1P42A 2C37A 4WUCA 5FLXC 4LF4I 3CDIA 2DEJA 2A2CA 5ELWA 2V2ZA 4B3RI 1Z5CA 5JEAD 4DR2I 1IBLI 4LCHA 4DPWA 2LJPA 4JI2I 3OTOI 2X36A 2PNZA 1WUUA 4DPTA 2Z5CA 4DPXA 4JYAI 4LF7I 1I94E 4JI8E 5LMUE 3WU3A 4DV5E 4DR7E 1S4EA 2V2VA 5DNLA 1N36E 4ED4A 4YHHI 1ELOA 2WP8B 1NHIA 3QT5A 3T1HE 1QZRA 5DRRA 1R6LA 1J5EE 2JEBB 1PVGA 5LMNE 1Z0BA 3D4JA 5DRPA 2HK3A 5A2QC 2IOQA 4PRXA 2ZITA 2PO1B 1USVA 4DR5E 2EFGA 3Q6NA 4DV4I 4B3ME 3PYFA 2BA0D 2BV3A 3QT6A 4MDTA 1ZM3A 1I94I 5C0XB 5LMUI 4DV5I 4DR7I 2HK2A 4Z7YA 1N36I 4JV5E 1HR0I 2XEXA 2PO2A 3T1HI 2UUBI 4KHPE 1J5EI 4AIDA 2HFUA 4DR3I 4U3BA 4IFDE 4JG4A 3J7AM 4B3MI 2J65A 4Z7CA 4OX9E 4BA2B 4DV0E 4AM3A 2Q2EB 2NPFA 3LNUA 2WNRA 3L7ZA 5C0XC 3P3CA 1OYRA 3PS3A 4OO1C 1S16A 3GMEA 5K36B 4JV5I 4WUDA 2IESA 1Z5BA 4KHPI 1ZXNA 1FWKA
chains in the Genus database with same CATH topology
4GQUA 5EL9A 4MU0A 4LPFA 4MU3A 4MU1A 4MU4A 4QNKA 5DNLA 4LOMA 2F1DA 2AE8A 4QNJA 5EKWA 1RHYA 5ELWA 5DNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  5EL9 A;  4MU0 A;  4LPF A;  4MU3 A;  4MU1 A;  4MU4 A;  4QNK A;  5DNL A;  4LOM A;  2F1D A;  2AE8 A;  4QNJ A;  5EKW A;  1RHY A;  5ELW A;  5DNX A; 
#chains in the Genus database with same CATH topology
 2GO3 A;  1N33 E;  4FWG A;  4LPF A;  1KKH A;  3DD6 A;  2Z5B A;  4IFD D;  4X65 E;  4AQY E;  3ZZU A;  2O1U A;  4FN5 A;  3GLL A;  4YY3 E;  4FW9 A;  3JAM Q;  5JEA B;  4DV0 I;  4NXM E;  1Y6Z A;  2HKE A;  4XTJ A;  2V8P A;  5IT9 C;  1ZM4 A;  2C39 A;  1HNZ E;  5LL6 R;  1OYS A;  5K36 C;  5C0X F;  4OO1 F;  2UXB I;  4AIM A;  3V2U C;  1NHH A;  5FLX Q;  3U1K A;  1HK7 A;  2VF3 A;  3K17 A;  2JEA A;  2JE6 B;  4MYT A;  3WU4 A;  2GS8 A;  4JI1 E;  1A6F A;  4AQY I;  4JI0 E;  3J7A G;  2O3Z A;  1OYP A;  5JEA C;  4LF6 I;  4IZJ D;  1FKA E;  1Y4S A;  3PS1 A;  1NZ0 A;  3HUL A;  4DR6 E;  4USM A;  1UDQ A;  4PU9 A;  1HNZ I;  4DPU A;  3P76 A;  4OO1 A;  4LF7 E;  1HNW E;  1RR9 A;  5K36 F;  4DV1 E;  4UT4 A;  1ZM9 A;  2GQ0 A;  5A2Q Q;  4QNK A;  4FW4 A;  2BA1 G;  3J81 C;  2UU9 I;  3Q1Q A;  4JI1 I;  4JI0 I;  4J3D A;  3T1Y E;  4JI4 E;  4LCF A;  4BA1 B;  4DR4 E;  4DV4 E;  5JEA F;  1FI4 A;  4X62 I;  4DR6 I;  1N0U A;  4DXL A;  3J80 Q;  1HNW I;  4DV3 I;  2HHH I;  4DU7 A;  4IZK A;  4WUB A;  4DV1 I;  2Z5E A;  3P3E A;  1HR0 E;  5GME A;  3PS2 A;  4NXN I;  1UDN A;  2PNL A;  2CVE A;  2C38 B;  4DR3 E;  1N32 E;  4K0K E;  3T1Y I;  4JI4 I;  1XNR E;  5L3J A;  4DR4 I;  4MYU A;  2AE8 A;  1BKN A;  4IFD B;  3PYE A;  3M85 G;  4MU0 A;  5FWK A;  4KQV A;  4JI5 I;  2R3V A;  1E3P A;  1N0V C;  4DV6 E;  4B3T E;  4OKG A;  2IOP A;  2BR2 B;  1PIE A;  1EI1 A;  2UUB E;  4LOM A;  1Z0C A;  1UDO A;  1N32 I;  4K0K I;  1XMO E;  4IFD C;  1XNR I;  2BM0 A;  1UDS A;  4P52 A;  5IT9 Q;  4GKJ E;  4HYM A;  4HAC A;  3HKM A;  4LCG A;  3M85 D;  2DEI A;  3B78 A;  4IZJ B;  4MU3 A;  4MU1 A;  5EL9 A;  1H73 A;  4DV6 I;  4DPY A;  4B3T I;  4RPF A;  1B62 A;  1DAR A;  3M6A A;  2PO0 B;  1H7S A;  2UXB E;  2BM1 A;  3UHM A;  2C37 B;  5DRO A;  4DR1 E;  3GCM A;  2JT2 A;  2UXD E;  4R1F A;  1XMO I;  4I3H A;  1YH8 A;  4LF6 E;  4IFD F;  4GKJ I;  2VQE E;  2PNZ B;  1Z59 A;  2Z5C B;  4LF9 E;  1D6T A;  1H72 C;  3B82 A;  2NN6 E;  1KVK A;  3M7N G;  4B3S E;  2IER A;  2WP8 A;  4FW5 A;  2R42 A;  2JEB A;  4LFB E;  4DR1 I;  2WW4 A;  1OJ4 A;  1EA6 A;  2UXD I;  2UU9 E;  2PNM A;  3ZZ0 A;  4USK A;  2PO1 A;  1Z0E A;  1E3H A;  1VI7 A;  3PYD A;  2VES A;  4X66 E;  2VQE I;  4X62 E;  2V2Q A;  4DV2 E;  2CGE A;  4LF9 I;  1Y4U A;  4FWH A;  2NN6 D;  5C0X A;  2F4V E;  4FW6 A;  3M7N D;  3QT8 A;  2E5L I;  3QT7 A;  4B3S I;  4DV3 E;  2CZ9 A;  2HFS A;  4ZVI A;  2HHH E;  4LFB I;  2PO2 B;  1MG7 A;  4NXN E;  1Y5Y A;  1Z0G A;  2F1D A;  2UXC E;  4DUY E;  4GQU A;  1K47 A;  3F0N A;  1IBM I;  4BA2 A;  4FW7 A;  4IZJ A;  4X66 I;  4LFA E;  1U2R A;  4X64 I;  2ZBK B;  4DV2 I;  3L7Z B;  4LF5 E;  2F4V I;  4DV7 E;  3ZM7 A;  2PO0 A;  4JI5 E;  4LF8 I;  5K36 A;  1MU5 A;  1FWL A;  2HKJ A;  4QNJ A;  2UUC I;  3P06 A;  3ZKB A;  2BA1 D;  3K1J A;  2O1W A;  1YHC A;  4U3D A;  2Z5B B;  3ZZT A;  1XNQ E;  2UXC I;  4DUY I;  1RRE A;  2BA0 G;  1H74 A;  5JEA A;  5BR8 I;  3PYG A;  3CDJ A;  3ZKD A;  4LFA I;  4M1K A;  2A2D A;  4MQY A;  5IWA E;  2UUA E;  4LF5 I;  3NZK A;  4DV7 I;  2C39 B;  2X7I A;  2E1R A;  2OI2 A;  3Q6M A;  1N34 I;  4DUZ E;  4JI6 I;  1R6M A;  2ZM6 I;  2JE6 A;  2GO4 A;  2JEA B;  1Z0W A;  3KRN A;  4PRV A;  1XNQ I;  4FW3 A;  1B63 A;  3B4T A;  2VQF E;  3U1Y A;  3K85 A;  5IWA I;  2UUA I;  2O1V A;  4JI8 I;  2AJ4 A;  5GMD A;  1H7U A;  1USU A;  3GON A;  4OO1 B;  4DUZ I;  3J80 C;  2NN6 B;  1RHY A;  4EMD A;  5LMN I;  5DRQ A;  3CWV A;  4GKK E;  1ZXM A;  4DR5 I;  3LPS A;  4UTG A;  4BA1 A;  2VQF I;  1PKP A;  4JI7 E;  5C0X E;  2V34 A;  1Z5A A;  3B8H A;  4OO1 E;  1IBK E;  1KIJ A;  1XXE A;  4JI3 E;  1XMQ E;  2NN6 C;  4NBQ A;  2E5L E;  4IZK B;  2O1T A;  3J81 Q;  4N3O A;  1KTV A;  2C38 A;  4GKK I;  3HJC A;  3H4L A;  1Y60 A;  3PRY A;  4IFD A;  1UEK A;  4OX9 I;  1VIS A;  4DU8 A;  4JI7 I;  1IBM E;  4P7A A;  5C0X D;  4X64 E;  1HNX E;  4OO1 D;  1IBK I;  5K36 E;  4JI3 I;  1XMQ I;  3LTO A;  1FJG E;  4IS9 A;  4FWD A;  4LF8 E;  2NN6 F;  1FNM A;  2BR2 A;  5EKW A;  4LFC E;  2CG9 A;  4URL A;  4ISA A;  3H1C A;  2UUC E;  1N33 I;  3WU5 A;  4LF4 E;  3V5R A;  4X65 I;  4B3R E;  5JEA E;  4DR2 E;  1IBL E;  3WU6 A;  4MU4 A;  1XHK A;  4YY3 I;  1NHJ A;  1Z0V A;  4NXM I;  4JI2 E;  3OTO E;  5BR8 E;  1Z0T A;  4HAC B;  1HNX I;  4JYA E;  5K36 D;  3P3G A;  3JAM C;  4HY1 A;  2WNR B;  4OZE A;  1FJG I;  1MX0 A;  2J7K A;  5DNX A;  1ZM2 A;  2NN6 A;  1N34 E;  4LFC I;  4YHH E;  4JI6 E;  4HXZ A;  2ZM6 E;  1P42 A;  2C37 A;  4WUC A;  5FLX C;  4LF4 I;  3CDI A;  2DEJ A;  2A2C A;  5ELW A;  2V2Z A;  4B3R I;  1Z5C A;  5JEA D;  4DR2 I;  1IBL I;  4LCH A;  4DPW A;  2LJP A;  4JI2 I;  3OTO I;  2X36 A;  2PNZ A;  1WUU A;  4DPT A;  2Z5C A;  4DPX A;  4JYA I;  4LF7 I;  1I94 E;  4JI8 E;  5LMU E;  3WU3 A;  4DV5 E;  4DR7 E;  1S4E A;  2V2V A;  5DNL A;  1N36 E;  4ED4 A;  4YHH I;  1ELO A;  2WP8 B;  1NHI A;  3QT5 A;  3T1H E;  1QZR A;  5DRR A;  1R6L A;  1J5E E;  2JEB B;  1PVG A;  5LMN E;  1Z0B A;  3D4J A;  5DRP A;  2HK3 A;  5A2Q C;  2IOQ A;  4PRX A;  2ZIT A;  2PO1 B;  1USV A;  4DR5 E;  2EFG A;  3Q6N A;  4DV4 I;  4B3M E;  3PYF A;  2BA0 D;  2BV3 A;  3QT6 A;  4MDT A;  1ZM3 A;  1I94 I;  5C0X B;  5LMU I;  4DV5 I;  4DR7 I;  2HK2 A;  4Z7Y A;  1N36 I;  4JV5 E;  1HR0 I;  2XEX A;  2PO2 A;  3T1H I;  2UUB I;  4KHP E;  1J5E I;  4AID A;  2HFU A;  4DR3 I;  4U3B A;  4IFD E;  4JG4 A;  3J7A M;  4B3M I;  2J65 A;  4Z7C A;  4OX9 E;  4BA2 B;  4DV0 E;  4AM3 A;  2Q2E B;  2NPF A;  3LNU A;  2WNR A;  3L7Z A;  5C0X C;  3P3C A;  1OYR A;  3PS3 A;  4OO1 C;  1S16 A;  3GME A;  5K36 B;  4JV5 I;  4WUD A;  2IES A;  1Z5B A;  4KHP I;  1ZXN A;  1FWK A; 
#chains in the Genus database with same CATH homology
 4GQU A;  5EL9 A;  4MU0 A;  4LPF A;  4MU3 A;  4MU1 A;  4MU4 A;  4QNK A;  5DNL A;  4LOM A;  2F1D A;  2AE8 A;  4QNJ A;  5EKW A;  1RHY A;  5ELW A;  5DNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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