The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
100
|
sequence length |
295
|
structure length |
290
|
Chain Sequence |
GDSTILKVLQSNIQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISPKTPHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the mouse peptide N-glycanase-HR23 complex suggests co-evolution of the endoplasmic reticulum-associated degradation and DNA repair pathways.
pubmed doi rcsb |
| molecule tags |
Hydrolase/hydrolase inhibitor
|
| source organism |
Mus musculus
|
| molecule keywords |
peptide N-glycanase
|
| total genus |
100
|
| structure length |
290
|
| sequence length |
295
|
| ec nomenclature |
ec
3.5.1.52: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase. |
| pdb deposition date | 2005-11-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01841 | Transglut_core | Transglutaminase-like superfamily |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb | ||
| Alpha Beta | Roll | C8orf32 fold | C8orf32 fold |
#chains in the Genus database with same CATH superfamily 1RO4 A; 2PK7 A; 1NUI A; 4FGP A; 2NVT I; 2RBL A; 4Y52 I; 1N2F A; 4QTT A; 3U50 C; 1ZB8 A; 3A55 A; 4A93 I; 3HOX I; 2P3Y A; 3GTP I; 3D6W A; 1TFI A; 1TWA I; 2DE5 A; 1SFO I; 3S16 I; 4A3C I; 2VUM I; 3GTM I; 4NBA A; 4NBB A; 2JS4 A; 4FGQ A; 5C44 I; 2JNY A; 4A3M I; 1L1O C; 5FLM I; 3S2H I; 1Y1V I; 4A3K I; 4A3J I; 1TWF I; 4NB9 A; 3S17 I; 1USP B; 1TWH I; 3GTJ I; 4X6A I; 1TWC I; 2J6A A; 1RLY A; 5C4X I; 5CM2 M; 4A3L I; 3GTG I; 1ML8 A; 3GTM S; 4BBR I; 2R92 I; 4A3E I; 3GCF A; 4A3I I; 3HOY I; 4NB8 A; 3I4M I; 4A3B I; 4A3D I; 2KSV A; 2DE6 A; 2E2I I; 1VLA A; 1Y1V S; 3H0G I; 2DE7 A; 2AKL A; 3A54 A; 2R93 I; 1TWG I; 2JA7 I; 2ZK9 X; 3GTK I; 5C4J I; 2JA8 I; 2NVX I; 1X3Z A; 4U65 E; 5C3E I; 2JA6 I; 1ZB9 A; 3HOW I; 1LQL A; 5IP7 I; 3VMH A; 4BBS I; 4A3G I; 2R7Z I; 3VMI A; 2HF1 A; 3RZO I; 3K7A I; 1USP A; 3PO2 I; 3A56 A; 4NOZ A; 3LUS A; 2K5R A; 2E2H I; 1K83 I; 3S1N I; 3HOZ I; 2B63 I; 1I50 I; 4NBF A; 3M4O I; 3M3Y I; 3EER A; 2F4O A; 2NVQ I; 4BXX I; 3GTO I; 3VB9 A; 4NBH A; 3CQZ I; 3GKQ A; 3Q87 A; 3GTL I; 4NBD A; 3PO3 I; 2E2J I; 3FKI I; 2KPI A; 3S1M I; 3S1R I; 4BY1 I; 3H3V J; 3S14 I; 3S2D I; 4NBG A; 3GTQ I; 3ESW A; 2F4M A; 1Y1W I; 3I4N I; 2YU9 I; 3HOU I; 1PFT A; 3S1Q I; 3RZD I; 1DL6 A; 3KD4 A; 4A3F I; 3I07 A; 4XX2 A; 1I6H I; 1WCM I; 1R9T I; 3PO3 S; 3ISR A; 4Y7N I; 4NBE A; 3HOV I; 2JR6 A; 1I3Q I; 2BJO A; 4MH4 A; 5IP9 I; 4FGO A; 1WW9 A; 4NBC A; 1X3W A; 4QTU A; 2NVY I; 3S15 I; 1QYP A; 4BY7 I; 1YUA A; 2JA5 I; 3VMG A; #chains in the Genus database with same CATH topology 1AA6 A; 2RIQ A; 3OW2 Y; 1RQF A; 1VQN 1; 3CC2 1; 4Y52 I; 1QVF Y; 2QA4 1; 3U50 C; 1ZB8 A; 3HOX I; 1KRL A; 5LL6 f; 3D6W A; 2JIM A; 1SFO I; 4W79 A; 2VF1 A; 4NBB A; 2JS4 A; 4FGQ A; 3NFZ A; 1JJ2 Y; 1Z01 A; 3S2H I; 4A3J I; 4RS4 A; 3CXC Y; 5T6B A; 2JIR A; 2Y0S A; 3BG0 B; 4X6A I; 3CMA Z; 1VQ9 1; 3CCE Z; 2IV2 X; 2Q51 A; 3GTG I; 5FLX b; 3CC4 1; 4NB8 A; 4E31 A; 1VLA A; 1X0T A; 2AKL A; 5D1O B; 3G4S Z; 1Q7Y 2; 4RV9 A; 1Q82 2; 1WJ2 A; 3IF8 A; 3CCU 1; 1YIT 1; 3CC7 1; 1NP6 A; 5T67 A; 3GTK I; 4U65 E; 4DGL A; 5C3E I; 1LQL A; 3VMH A; 2V8I A; 4BBS I; 2R7Z I; 4NFR A; 3NH8 A; 3MZL B; 3CC2 Z; 1Z03 A; 2K5R A; 2O53 A; 1K8A 1; 1K9M 2; 1K83 I; 3CCM Z; 2EGT A; 1VQ5 1; 3M4O I; 1SIW A; 3BG1 B; 5IT9 b; 2F4O A; 4BXX I; 3I55 1; 4E33 A; 4DK1 A; 5T64 A; 3T4N B; 3G71 Z; 3S1M I; 3H3V J; 3S2D I; 2F4M A; 1KQS Z; 3TE5 B; 1VQ9 Z; 3HOU I; 3MON A; 3F3P C; 3CCQ Z; 1VQO 1; 1FDI A; 1M90 1; 2H85 A; 1YI2 Z; 2JMO A; 1WCM I; 4NBE A; 1KC8 2; 2BJO A; 4NBC A; 1X3W A; 2GTI A; 3CCJ Z; 3CD6 Z; 2PK7 A; 3VTN A; 4FGP A; 1VQP Z; 2Q4Z A; 2RBL A; 5FLX f; 3CCE 1; 4RVG A; 4RVD A; 3IFU A; 1TFI A; 1TWA I; 2DE5 A; 2RT9 A; 1VQ8 Z; 2YAD A; 4E2Y A; 1KD1 1; 3NDJ A; 1Y1V I; 4A3K I; 4MRI A; 4NB9 A; 1TWH I; 3EED A; 1RLY A; 1K73 2; 4E2X A; 4TNU A; 2M6N A; 1N8R 1; 1QVG Z; 1ML8 A; 2V3V A; 4BBR I; 3GCF A; 3HOY I; 3CCM 1; 3I56 Z; 2DE6 A; 2WB1 A; 1Y1V S; 5IT9 f; 2LIY A; 1YJW Z; 1VQO Z; 1YJ9 Z; 3A54 A; 1RO2 A; 1TWG I; 4HH4 A; 2JA7 I; 3F3F C; 1NJI 1; 1M1K 1; 2WAQ A; 2JA8 I; 3G71 1; 3TDH B; 3FQM A; 3QWU A; 3CCV Z; 1VQL Z; 5IP7 I; 1QF8 A; 2V8K A; 3J7A 4; 3K7A I; 3NDI A; 1USP A; 3D9X A; 3LUS A; 4RVH A; 1Z02 A; 2E2H I; 2RPR A; 3D2L A; 2VPX A; 3CCQ 1; 1YI2 1; 2B63 I; 1I50 I; 2JIP A; 2PMZ A; 3CCJ 1; 1Y8C A; 3CD6 1; 1Q81 1; 4E30 A; 3CME Z; 3Q87 A; 4NBD A; 3IX0 A; 1VQP 1; 2KPI A; 2M48 A; 3S1R I; 4BY1 I; 4MD8 A; 2K3R A; 2P28 A; 2OOY B; 3ESW A; 2KI7 B; 1Y1W I; 4HGY A; 1K8A 2; 3CCL Z; 3CPW Y; 2HU9 A; 1Q86 1; 1S72 Z; 1PFT A; 1DL6 A; 4A3F I; 1I6H I; 1VQ8 1; 1R9T I; 1WII A; 4Y7N I; 3HOV I; 1I3Q I; 1VQ4 Z; 3OW2 Z; 1Q82 1; 2PM9 A; 1QVF Z; 5D1P A; 3S15 I; 1ZH1 A; 2JA5 I; 3GTP I; 3CCS Z; 1VQ6 Z; 2R6M A; 2NVT I; 2OTL Z; 3C9Q A; 1N2F A; 3G6E Z; 2QRE B; 4QTT A; 3CCR 1; 4A93 I; 3I56 1; 1JJ2 Z; 4MXU A; 4RVF A; 1YJW 1; 3CXC Z; 1YJ9 1; 3S16 I; 3KIF A; 2G2K A; 1QVG Y; 2VUM I; 1QXF A; 1VQM 1; 2JNY A; 5FLM I; 1W2B Z; 2NAP A; 3J81 f; 2QR1 B; 2QEX Z; 1USP B; 3S17 I; 3CCV 1; 1VQL 1; 1TWC I; 2J6A A; 2GTH A; 4E32 A; 5C4X I; 2O4H A; 1YHQ Z; 4A3I I; 2V45 A; 4A3D I; 1VQ7 1; 2W03 A; 2KSV A; 2E2I I; 3H0G I; 2DE7 A; 1KD1 2; 2OTJ Z; 2R93 I; 1KC8 1; 1Q16 A; 3CME 1; 3FQQ A; 5C4J I; 2AYD A; 1YUK A; 2RHB A; 3CCL 1; 1JWH C; 4A3G I; 3VMI A; 2HF1 A; 3RZO I; 3JAM f; 5AN9 F; 2IZ3 A; 4NOZ A; 1S72 1; 2JUB A; 3A56 A; 3CCR Z; 2IZ4 A; 3HOZ I; 2VUG A; 4NBF A; 1VQ4 1; 1P9N A; 1RO0 A; 1M1K 2; 1VQM Z; 2W04 A; 3GTO I; 3CCS 1; 3CQZ I; 1VQ6 1; 3GTL I; 3PO3 I; 4AYB A; 2OTL 1; 2JIO A; 4NBG A; 3J81 b; 3G6E 1; 1K73 1; 3GTQ I; 2V8J A; 3I4N I; 3S1Q I; 3J80 f; 3I07 A; 1VQ7 Z; 4NH1 C; 1KQS Y; 2E7Z A; 3PO3 S; 3ISR A; 2JR6 A; 4MH4 A; 1Q81 2; 1QYP A; 1YUA A; 2QEX 1; 1RO4 A; 2VPW A; 1NUI A; 1Q86 2; 1W2B Y; 1YHQ 1; 4MD9 A; 3A55 A; 2QLV B; 2P3Y A; 5A2Q f; 2OTJ 1; 3JAM b; 1YIJ 1; 4A3C I; 3GTM I; 4NBA A; 3NH5 A; 5C44 I; 4A3M I; 1Q7Y 1; 1L1O C; 1TWF I; 1RNI A; 2GU2 A; 2E9H A; 3GTJ I; 4E2Z A; 2I3C A; 5CM2 M; 4A3L I; 2LFU A; 1VQN Z; 3GTM S; 2QA4 Z; 1VQK 1; 2R92 I; 4A3E I; 3I4M I; 4A3B I; 1M90 2; 1K9M 1; 2VPZ A; 3J80 b; 2QKD A; 3NH4 A; 2ZK9 X; 1YJN 1; 4MON A; 2NVX I; 1FDO A; 1X3Z A; 2JA6 I; 1ZB9 A; 3HOW I; 4CL1 A; 2OZK A; 3HKZ A; 3PO2 I; 3CC4 Z; 3S1N I; 4HGZ A; 1YIJ Z; 3M3Y I; 3EER A; 5A2Q b; 2QRD B; 2NVQ I; 3CCU Z; 1YIT Z; 3KIH A; 3CPW Z; 3CC7 Z; 3VB9 A; 4NBH A; 5D1O A; 3GKQ A; 2QRC B; 3CMA 1; 2E2J I; 1S7M A; 3FKI I; 4DQY B; 2OOX B; 4EWC A; 3S14 I; 1N8R 2; 1WZN A; 4E2W A; 2VPY A; 3MZK B; 2JIQ A; 2YU9 I; 3RZD I; 2ZAE B; 1VQK Z; 3KD4 A; 3G4S 1; 4XX2 A; 4S1T A; 4FGO A; 1NJI 2; 5IP9 I; 2LEX A; 1WW9 A; 3P5J B; 1VQ5 Z; 4MD7 A; 4QTU A; 2NVY I; 4BY7 I; 3IR7 A; 3I55 Z; 1YJN Z; 3VMG A; #chains in the Genus database with same CATH homology 2RIQ A; 3OW2 Y; 1RQF A; 1VQN 1; 3CC2 1; 4Y52 I; 1QVF Y; 2QA4 1; 3U50 C; 1ZB8 A; 3HOX I; 1KRL A; 5LL6 f; 3D6W A; 1SFO I; 2VF1 A; 4NBB A; 2JS4 A; 4FGQ A; 3NFZ A; 1JJ2 Y; 1Z01 A; 3S2H I; 4A3J I; 4RS4 A; 3CXC Y; 5T6B A; 2Y0S A; 3BG0 B; 4X6A I; 3CMA Z; 1VQ9 1; 3CCE Z; 2Q51 A; 3GTG I; 5FLX b; 3CC4 1; 4NB8 A; 4E31 A; 1VLA A; 1X0T A; 2AKL A; 5D1O B; 3G4S Z; 1Q7Y 2; 4RV9 A; 1Q82 2; 3IF8 A; 3CCU 1; 1YIT 1; 3CC7 1; 1NP6 A; 5T67 A; 3GTK I; 4U65 E; 4DGL A; 5C3E I; 1LQL A; 3VMH A; 2V8I A; 4BBS I; 2R7Z I; 4NFR A; 3NH8 A; 3MZL B; 3CC2 Z; 1Z03 A; 2K5R A; 2O53 A; 1K8A 1; 1K9M 2; 1K83 I; 3CCM Z; 2EGT A; 1VQ5 1; 3M4O I; 3BG1 B; 5IT9 b; 2F4O A; 4BXX I; 3I55 1; 4E33 A; 4DK1 A; 5T64 A; 3T4N B; 3G71 Z; 3S1M I; 3H3V J; 3S2D I; 2F4M A; 1KQS Z; 3TE5 B; 1VQ9 Z; 3HOU I; 3MON A; 3F3P C; 3CCQ Z; 1VQO 1; 1M90 1; 2H85 A; 1YI2 Z; 2JMO A; 1WCM I; 4NBE A; 1KC8 2; 2BJO A; 4NBC A; 1X3W A; 2GTI A; 3CCJ Z; 3CD6 Z; 2PK7 A; 3VTN A; 4FGP A; 1VQP Z; 2Q4Z A; 2RBL A; 5FLX f; 3CCE 1; 4RVG A; 4RVD A; 3IFU A; 1TFI A; 1TWA I; 2DE5 A; 2RT9 A; 1VQ8 Z; 2YAD A; 4E2Y A; 1KD1 1; 3NDJ A; 1Y1V I; 4A3K I; 4MRI A; 4NB9 A; 1TWH I; 3EED A; 1RLY A; 1K73 2; 4E2X A; 4TNU A; 2M6N A; 1N8R 1; 1QVG Z; 1ML8 A; 4BBR I; 3GCF A; 3HOY I; 3CCM 1; 3I56 Z; 2DE6 A; 2WB1 A; 1Y1V S; 5IT9 f; 2LIY A; 1YJW Z; 1VQO Z; 1YJ9 Z; 3A54 A; 1RO2 A; 1TWG I; 4HH4 A; 2JA7 I; 3F3F C; 1NJI 1; 1M1K 1; 2WAQ A; 2JA8 I; 3G71 1; 3TDH B; 3FQM A; 3QWU A; 3CCV Z; 1VQL Z; 5IP7 I; 1QF8 A; 2V8K A; 3J7A 4; 3K7A I; 3NDI A; 1USP A; 3D9X A; 3LUS A; 4RVH A; 1Z02 A; 2E2H I; 2RPR A; 3CCQ 1; 1YI2 1; 2B63 I; 1I50 I; 2PMZ A; 3CCJ 1; 3CD6 1; 1Q81 1; 4E30 A; 3CME Z; 3Q87 A; 4NBD A; 3IX0 A; 1VQP 1; 2KPI A; 2M48 A; 3S1R I; 4BY1 I; 4MD8 A; 2K3R A; 2P28 A; 2OOY B; 3ESW A; 2KI7 B; 1Y1W I; 4HGY A; 1K8A 2; 3CCL Z; 3CPW Y; 2HU9 A; 1Q86 1; 1S72 Z; 1PFT A; 1DL6 A; 4A3F I; 1I6H I; 1VQ8 1; 1R9T I; 1WII A; 4Y7N I; 3HOV I; 1I3Q I; 1VQ4 Z; 3OW2 Z; 1Q82 1; 2PM9 A; 1QVF Z; 5D1P A; 3S15 I; 1ZH1 A; 2JA5 I; 3GTP I; 3CCS Z; 1VQ6 Z; 2R6M A; 2NVT I; 2OTL Z; 1N2F A; 3G6E Z; 2QRE B; 4QTT A; 3CCR 1; 4A93 I; 3I56 1; 1JJ2 Z; 4MXU A; 4RVF A; 1YJW 1; 3CXC Z; 1YJ9 1; 3S16 I; 3KIF A; 2G2K A; 1QVG Y; 2VUM I; 1VQM 1; 2JNY A; 5FLM I; 1W2B Z; 3J81 f; 2QR1 B; 2QEX Z; 1USP B; 3S17 I; 3CCV 1; 1VQL 1; 1TWC I; 2J6A A; 2GTH A; 4E32 A; 5C4X I; 2O4H A; 1YHQ Z; 4A3I I; 4A3D I; 1VQ7 1; 2W03 A; 2KSV A; 2E2I I; 3H0G I; 2DE7 A; 1KD1 2; 2OTJ Z; 2R93 I; 1KC8 1; 3CME 1; 3FQQ A; 5C4J I; 1YUK A; 2RHB A; 3CCL 1; 1JWH C; 4A3G I; 3VMI A; 2HF1 A; 3RZO I; 3JAM f; 5AN9 F; 2IZ3 A; 4NOZ A; 1S72 1; 2JUB A; 3A56 A; 3CCR Z; 2IZ4 A; 3HOZ I; 2VUG A; 4NBF A; 1VQ4 1; 1P9N A; 1RO0 A; 1M1K 2; 1VQM Z; 2W04 A; 3GTO I; 3CCS 1; 3CQZ I; 1VQ6 1; 3GTL I; 3PO3 I; 4AYB A; 2OTL 1; 4NBG A; 3J81 b; 3G6E 1; 1K73 1; 3GTQ I; 2V8J A; 3I4N I; 3S1Q I; 3J80 f; 3I07 A; 1VQ7 Z; 4NH1 C; 1KQS Y; 3PO3 S; 3ISR A; 2JR6 A; 4MH4 A; 1Q81 2; 1QYP A; 1YUA A; 2QEX 1; 1RO4 A; 1NUI A; 1Q86 2; 1W2B Y; 1YHQ 1; 4MD9 A; 3A55 A; 2QLV B; 2P3Y A; 5A2Q f; 2OTJ 1; 3JAM b; 1YIJ 1; 4A3C I; 3GTM I; 4NBA A; 3NH5 A; 5C44 I; 4A3M I; 1Q7Y 1; 1L1O C; 1TWF I; 1RNI A; 2GU2 A; 2E9H A; 3GTJ I; 4E2Z A; 2I3C A; 5CM2 M; 4A3L I; 2LFU A; 1VQN Z; 3GTM S; 2QA4 Z; 1VQK 1; 2R92 I; 4A3E I; 3I4M I; 4A3B I; 1M90 2; 1K9M 1; 3J80 b; 2QKD A; 3NH4 A; 2ZK9 X; 1YJN 1; 4MON A; 2NVX I; 1X3Z A; 2JA6 I; 1ZB9 A; 3HOW I; 4CL1 A; 2OZK A; 3HKZ A; 3PO2 I; 3CC4 Z; 3S1N I; 4HGZ A; 1YIJ Z; 3M3Y I; 3EER A; 5A2Q b; 2QRD B; 2NVQ I; 3CCU Z; 1YIT Z; 3KIH A; 3CPW Z; 3CC7 Z; 3VB9 A; 4NBH A; 5D1O A; 3GKQ A; 2QRC B; 3CMA 1; 2E2J I; 1S7M A; 3FKI I; 4DQY B; 2OOX B; 4EWC A; 3S14 I; 1N8R 2; 4E2W A; 3MZK B; 2YU9 I; 3RZD I; 2ZAE B; 1VQK Z; 3KD4 A; 3G4S 1; 4XX2 A; 4S1T A; 4FGO A; 1NJI 2; 5IP9 I; 1WW9 A; 3P5J B; 1VQ5 Z; 4MD7 A; 4QTU A; 2NVY I; 4BY7 I; 3I55 Z; 1YJN Z; 3VMG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
