3PS3A

Crystal structure of the escherichia coli lpxc/lpc-053 complex
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
300
structure length
300
Chain Sequence
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/antibiotic
source organism Escherichia coli ihe3034
publication title Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold.
pubmed doi rcsb
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 82
structure length 300
sequence length 300
ec nomenclature ec 3.5.1.-:
pdb deposition date 2010-11-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3ps3A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3ps3A02
4FW3A 4J3DA 2GO3A 4FW5A 3PS2A 4MQYA 4OZEA 2JT2A 3P3EA 4OKGA 2O3ZA 4FW7A 4LCGA 4LCHA 5DRPA 3U1YA 2VESA 3NZKA 4IS9A 3P3GA 5DRQA 2J65A 4MDTA 2IERA 4FW6A 3PS3A 4ISAA 3PS1A 4U3DA 4U3BA 5DROA 1P42A 2IESA 4FW4A 2GO4A 3P76A 1XXEA 1YHCA 3P3CA 3UHMA 5DRRA 1YH8A 4LCFA
chains in the Genus database with same CATH superfamily
4B3RE 4MQYA 5K36B 2JEBB 4OZEA 3GLLA 4LF7E 2AE8A 1KTVA 2ZITA 4KQVA 3DD6A 2J65A 2C37B 2PO2B 5L3JA 4DR3E 2UUAE 3JAMC 4DV4E 1OYRA 1Z5AA 2R3VA 1FJGI 3KRNA 3T1HI 4OO1E 2PO1A 5LMNI 4P52A 4EMDA 1N32I 4DXLA 1MG7A 2HFSA 2Z5CB 4JI5I 3UHMA 4IFDF 2WP8A 5A2QQ 1HR0I 1PIEA 2O1TA 4J3DA 2GO3A 3QT6A 4IFDC 1OYPA 1U2RA 1USVA 1MU5A 2UUBE 2HKEA 2UXDI 1ZM2A 1J5EE 4DV2I 1IBLI 4IZJB 2BR2B 4B3TI 2BM1A 3K85A 4DU7A 1HNZE 4AQYI 2IESA 1Y60A 4X64I 4MU1A 4LF5E 4LF6E 5DRRA 5JEAB 4DR6E 4JYAE 2V2QA 1RR9A 4DV0I 1WUUA 5GMDA 4DV6E 1EA6A 2F4VI 4I3HA 2JT2A 4DUZE 1N34E 2UU9E 4JI3E 2IOPA 1N33E 2A2DA 1HNWI 2WNRB 1UDOA 4ISAA 2Q2EB 4DV3E 4LFBE 4DV1I 3M85G 3QT5A 4DV5I 1XNRE 1OYSA 4OX9I 3WU4A 2GO4A 4USKA 1UDNA 4BA2B 4JI7E 3M7ND 1BKNA 2CZ9A 5K36F 1IBME 1KVKA 2VQFE 2J7KA 4DUYI 4IZJD 5BR8I 4LF8I 1XHKA 5K36C 2F1DA 1FWLA 1N36I 4LFCI 4LCHA 4GKKI 2BA1G 5EKWA 4FWHA 2ZBKB 4NXNI 2X36A 1Z0WA 3QT7A 4LFAI 4JI8E 1Y5YA 2NN6A 1ZXNA 5JEAD 3CWVA 4JI6I 4MU0A 4NBQA 5C0XB 3B4TA 2ZM6E 3P3CA 3GONA 1ZXMA 1Z5BA 4LOMA 4UT4A 3GCMA 2UXCE 1XMQE 1R6LA 5LMUE 3M85D 5GMEA 4JV5E 2O3ZA 2R42A 4DR1I 1FKAE 2JE6B 4DPTA 2WW4A 1IBKI 2VESA 4DR5I 5IWAE 4BA2A 3K1JA 2PNZA 4DPYA 1H7UA 4PU9A 3WU6A 2HK3A 1HK7A 5JEAF 4IFDA 4RPFA 2BA1D 5JEAC 4YY3I 1YH8A 1Z0CA 1R6MA 4LCFA 2C39B 2HHHE 2NN6C 2A2CA 4JI0E 3CDJA 3L7ZA 2E5LE 3P3EA 4B3ME 4K0KI 4DR7E 2E1RA 4MU4A 3H4LA 3PYDA 1I94E 5DRQA 4LF9E 5C0XD 4MDTA 1UEKA 4MU3A 4DPWA 4JI2I 4AIDA 4Z7YA 2LJPA 1PKPA 3T1YE 3LTOA 4HYMA 2JE6A 4DR4E 3PYEA 5BR8E 1XNQI 4MYUA 5IT9C 4B3SE 4FN5A 1HNXE 1RREA 4YHHI 4BA1B 3PRYA 3PS2A 4XTJA 4JI1E 2O1UA 1S16A 4OKGA 2NN6E 1RHYA 1OJ4A 3J81Q 1UDQA 4X66E 1ELOA 1Z0GA 1DARA 4U3DA 5C0XF 4NXME 2C39A 4DR2E 2UUCE 1P42A 1Z0VA 5K36A 2CGEA 2JEBA 3P76A 4ZVIA 3J80Q 4DV7I 2BA0G 3OTOE 5FWKA 1Y4SA 2C37A 2PO2A 3ZM7A 1S4EA 1XMOI 2CVEA 3ZZTA 4LF4E 4GKJE 4KHPI 3NZKA 4IS9A 4IFDE 2Z5CA 4OO1B 2UXBE 4X65I 1UDSA 1EI1A 4WUDA 4X62I 1B62A 2VQEI 1FNMA 1H73A 5DNXA 5FLXC 2X7IA 1N0VC 4IZJA 2BR2A 1Z5CA 2NPFA 1Y4UA 4JI4I 3JAMQ 3F0NA 2Z5BB 4Z7CA 3B8HA 3K17A 4B3RI 1NZ0A 3U1YA 2OI2A 4LF7I 1FJGE 4WUCA 2BA0D 3T1HE 2O1WA 5JEAA 5LMNE 1N32E 5LL6R 2JEAB 4DR3I 4DV4I 3PYFA 4JI5E 1HR0E 2BM0A 1E3HA 3M6AA 4OO1D 2WNRA 2UXDE 4M1KA 1IBLE 4DV2E 3QT8A 4B3TE 5A2QC 3V2UC 1VISA 1USUA 2V2ZA 2UUBI 4QNJA 5K36E 1QZRA 4FW6A 3PS3A 4AQYE 3PS1A 1J5EI 3B82A 4DPXA 1NHHA 4X64E 3J7AG 1Z59A 2Z5BA 1NHIA 1HNZI 4DV0E 2F4VE 4LF5I 4PRXA 4LF6I 3PYGA 2EFGA 4DR6I 4JYAI 3J80C 2JEAA 1Z0BA 3ZZ0A 4OO1F 1VI7A 1KIJA 1HNWE 2O1VA 4FWDA 5C0XA 4DUZI 4R1FA 3ZZUA 4DV1E 1N34I 2UU9I 4JI3I 2IERA 4DV5E 4OX9E 1N33I 1FI4A 5EL9A 4FW9A 1D6TA 4DV3I 1N0UA 4WUBA 4LFBI 1PVGA 3U1KA 4IFDD 1ZM9A 1XNRI 3Q6NA 2DEJA 4DPUA 4DUYE 4LF8E 1NHJA 4JI7I 4N3OA 1N36E 1IBMI 4LFCE 2VQFI 4IZKB 4GKKE 3ZKBA 5JEAE 3CDIA 4FW7A 4NXNE 4QNKA 2BV3A 4LFAE 4JI6E 4U3BA 4MYTA 4URLA 1E3PA 2GS8A 4PRVA 2AJ4A 4JI8I 4JG4A 3Q6MA 1K47A 5C0XC 1XXEA 3GMEA 1H74A 3LNUA 2ZM6I 4HACB 4FW3A 4UTGA 4DR1E 2HK2A 4AM3A 1IBKE 4DR5E 2UXCI 1ZM3A 1XMQI 4LCGA 3M7NG 2V2VA 5LMUI 5DRPA 4JV5I 1H72C 3LPSA 5IWAI 4BA1A 3P06A 4IZKA 4FW4A 5K36D 2GQ0A 4YY3E 4ED4A 3V5RA 1MX0A 2PNLA 2V34A 2NN6B 5C0XE 4K0KE 4FW5A 1H7SA 2HHHI 4JI0I 2HKJA 2E5LI 4B3MI 3HKMA 3P3GA 1FWKA 4DR7I 4JI2E 1I94I 4HACA 2VF3A 5IT9Q 4LF9I 3WU5A 2CG9A 2UUAI 1XNQE 2PNZB 3T1YI 4YHHE 2C38B 2V8PA 4HXZA 4DR4I 4OO1A 5DNLA 1B63A 4IFDB 1Z0TA 4B3SI 1HNXI 2PO0B 4JI1I 3WU3A 4AIMA 3HULA 4USMA 5DROA 4X66I 1Y6ZA 3L7ZB 4P7AA 2NN6D 3B78A 4FWGA 4DV7E 4DU8A 3J81C 4NXMI 3J7AM 4DR2I 2UUCI 1ZM4A 1KKHA 4LPFA 4GQUA 1XMOE 3OTOI 3HJCA 2PO1B 2HFUA 1Z0EA 4KHPE 5ELWA 4DV6I 4X65E 2WP8B 5FLXQ 4LF4I 4OO1C 2C38A 4GKJI 2Z5EA 3Q1QA 4X62E 2VQEE 2UXBI 2DEIA 3D4JA 4HY1A 2NN6F 2PNMA 1A6FA 2XEXA 3H1CA 1YHCA 2IOQA 2PO0A 3ZKDA 4JI4E
chains in the Genus database with same CATH topology
4FW3A 4J3DA 2GO3A 4FW5A 3PS2A 4MQYA 4OZEA 2JT2A 3P3EA 4OKGA 2O3ZA 4FW7A 4LCGA 4LCHA 5DRPA 3U1YA 2VESA 3NZKA 4IS9A 3P3GA 5DRQA 2J65A 4MDTA 2IERA 4FW6A 3PS3A 4ISAA 3PS1A 4U3DA 4U3BA 5DROA 1P42A 2IESA 4FW4A 2GO4A 3P76A 1XXEA 1YHCA 3P3CA 3UHMA 5DRRA 1YH8A 4LCFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FW3 A;  4J3D A;  2GO3 A;  4FW5 A;  3PS2 A;  4MQY A;  4OZE A;  2JT2 A;  3P3E A;  4OKG A;  2O3Z A;  4FW7 A;  4LCG A;  4LCH A;  5DRP A;  3U1Y A;  2VES A;  3NZK A;  4IS9 A;  3P3G A;  5DRQ A;  2J65 A;  4MDT A;  2IER A;  4FW6 A;  3PS3 A;  4ISA A;  3PS1 A;  4U3D A;  4U3B A;  5DRO A;  1P42 A;  2IES A;  4FW4 A;  2GO4 A;  3P76 A;  1XXE A;  1YHC A;  3P3C A;  3UHM A;  5DRR A;  1YH8 A;  4LCF A; 
#chains in the Genus database with same CATH topology
 4B3R E;  4MQY A;  5K36 B;  2JEB B;  4OZE A;  3GLL A;  4LF7 E;  2AE8 A;  1KTV A;  2ZIT A;  4KQV A;  3DD6 A;  2J65 A;  2C37 B;  2PO2 B;  5L3J A;  4DR3 E;  2UUA E;  3JAM C;  4DV4 E;  1OYR A;  1Z5A A;  2R3V A;  1FJG I;  3KRN A;  3T1H I;  4OO1 E;  2PO1 A;  5LMN I;  4P52 A;  4EMD A;  1N32 I;  4DXL A;  1MG7 A;  2HFS A;  2Z5C B;  4JI5 I;  3UHM A;  4IFD F;  2WP8 A;  5A2Q Q;  1HR0 I;  1PIE A;  2O1T A;  4J3D A;  2GO3 A;  3QT6 A;  4IFD C;  1OYP A;  1U2R A;  1USV A;  1MU5 A;  2UUB E;  2HKE A;  2UXD I;  1ZM2 A;  1J5E E;  4DV2 I;  1IBL I;  4IZJ B;  2BR2 B;  4B3T I;  2BM1 A;  3K85 A;  4DU7 A;  1HNZ E;  4AQY I;  2IES A;  1Y60 A;  4X64 I;  4MU1 A;  4LF5 E;  4LF6 E;  5DRR A;  5JEA B;  4DR6 E;  4JYA E;  2V2Q A;  1RR9 A;  4DV0 I;  1WUU A;  5GMD A;  4DV6 E;  1EA6 A;  2F4V I;  4I3H A;  2JT2 A;  4DUZ E;  1N34 E;  2UU9 E;  4JI3 E;  2IOP A;  1N33 E;  2A2D A;  1HNW I;  2WNR B;  1UDO A;  4ISA A;  2Q2E B;  4DV3 E;  4LFB E;  4DV1 I;  3M85 G;  3QT5 A;  4DV5 I;  1XNR E;  1OYS A;  4OX9 I;  3WU4 A;  2GO4 A;  4USK A;  1UDN A;  4BA2 B;  4JI7 E;  3M7N D;  1BKN A;  2CZ9 A;  5K36 F;  1IBM E;  1KVK A;  2VQF E;  2J7K A;  4DUY I;  4IZJ D;  5BR8 I;  4LF8 I;  1XHK A;  5K36 C;  2F1D A;  1FWL A;  1N36 I;  4LFC I;  4LCH A;  4GKK I;  2BA1 G;  5EKW A;  4FWH A;  2ZBK B;  4NXN I;  2X36 A;  1Z0W A;  3QT7 A;  4LFA I;  4JI8 E;  1Y5Y A;  2NN6 A;  1ZXN A;  5JEA D;  3CWV A;  4JI6 I;  4MU0 A;  4NBQ A;  5C0X B;  3B4T A;  2ZM6 E;  3P3C A;  3GON A;  1ZXM A;  1Z5B A;  4LOM A;  4UT4 A;  3GCM A;  2UXC E;  1XMQ E;  1R6L A;  5LMU E;  3M85 D;  5GME A;  4JV5 E;  2O3Z A;  2R42 A;  4DR1 I;  1FKA E;  2JE6 B;  4DPT A;  2WW4 A;  1IBK I;  2VES A;  4DR5 I;  5IWA E;  4BA2 A;  3K1J A;  2PNZ A;  4DPY A;  1H7U A;  4PU9 A;  3WU6 A;  2HK3 A;  1HK7 A;  5JEA F;  4IFD A;  4RPF A;  2BA1 D;  5JEA C;  4YY3 I;  1YH8 A;  1Z0C A;  1R6M A;  4LCF A;  2C39 B;  2HHH E;  2NN6 C;  2A2C A;  4JI0 E;  3CDJ A;  3L7Z A;  2E5L E;  3P3E A;  4B3M E;  4K0K I;  4DR7 E;  2E1R A;  4MU4 A;  3H4L A;  3PYD A;  1I94 E;  5DRQ A;  4LF9 E;  5C0X D;  4MDT A;  1UEK A;  4MU3 A;  4DPW A;  4JI2 I;  4AID A;  4Z7Y A;  2LJP A;  1PKP A;  3T1Y E;  3LTO A;  4HYM A;  2JE6 A;  4DR4 E;  3PYE A;  5BR8 E;  1XNQ I;  4MYU A;  5IT9 C;  4B3S E;  4FN5 A;  1HNX E;  1RRE A;  4YHH I;  4BA1 B;  3PRY A;  3PS2 A;  4XTJ A;  4JI1 E;  2O1U A;  1S16 A;  4OKG A;  2NN6 E;  1RHY A;  1OJ4 A;  3J81 Q;  1UDQ A;  4X66 E;  1ELO A;  1Z0G A;  1DAR A;  4U3D A;  5C0X F;  4NXM E;  2C39 A;  4DR2 E;  2UUC E;  1P42 A;  1Z0V A;  5K36 A;  2CGE A;  2JEB A;  3P76 A;  4ZVI A;  3J80 Q;  4DV7 I;  2BA0 G;  3OTO E;  5FWK A;  1Y4S A;  2C37 A;  2PO2 A;  3ZM7 A;  1S4E A;  1XMO I;  2CVE A;  3ZZT A;  4LF4 E;  4GKJ E;  4KHP I;  3NZK A;  4IS9 A;  4IFD E;  2Z5C A;  4OO1 B;  2UXB E;  4X65 I;  1UDS A;  1EI1 A;  4WUD A;  4X62 I;  1B62 A;  2VQE I;  1FNM A;  1H73 A;  5DNX A;  5FLX C;  2X7I A;  1N0V C;  4IZJ A;  2BR2 A;  1Z5C A;  2NPF A;  1Y4U A;  4JI4 I;  3JAM Q;  3F0N A;  2Z5B B;  4Z7C A;  3B8H A;  3K17 A;  4B3R I;  1NZ0 A;  3U1Y A;  2OI2 A;  4LF7 I;  1FJG E;  4WUC A;  2BA0 D;  3T1H E;  2O1W A;  5JEA A;  5LMN E;  1N32 E;  5LL6 R;  2JEA B;  4DR3 I;  4DV4 I;  3PYF A;  4JI5 E;  1HR0 E;  2BM0 A;  1E3H A;  3M6A A;  4OO1 D;  2WNR A;  2UXD E;  4M1K A;  1IBL E;  4DV2 E;  3QT8 A;  4B3T E;  5A2Q C;  3V2U C;  1VIS A;  1USU A;  2V2Z A;  2UUB I;  4QNJ A;  5K36 E;  1QZR A;  4FW6 A;  3PS3 A;  4AQY E;  3PS1 A;  1J5E I;  3B82 A;  4DPX A;  1NHH A;  4X64 E;  3J7A G;  1Z59 A;  2Z5B A;  1NHI A;  1HNZ I;  4DV0 E;  2F4V E;  4LF5 I;  4PRX A;  4LF6 I;  3PYG A;  2EFG A;  4DR6 I;  4JYA I;  3J80 C;  2JEA A;  1Z0B A;  3ZZ0 A;  4OO1 F;  1VI7 A;  1KIJ A;  1HNW E;  2O1V A;  4FWD A;  5C0X A;  4DUZ I;  4R1F A;  3ZZU A;  4DV1 E;  1N34 I;  2UU9 I;  4JI3 I;  2IER A;  4DV5 E;  4OX9 E;  1N33 I;  1FI4 A;  5EL9 A;  4FW9 A;  1D6T A;  4DV3 I;  1N0U A;  4WUB A;  4LFB I;  1PVG A;  3U1K A;  4IFD D;  1ZM9 A;  1XNR I;  3Q6N A;  2DEJ A;  4DPU A;  4DUY E;  4LF8 E;  1NHJ A;  4JI7 I;  4N3O A;  1N36 E;  1IBM I;  4LFC E;  2VQF I;  4IZK B;  4GKK E;  3ZKB A;  5JEA E;  3CDI A;  4FW7 A;  4NXN E;  4QNK A;  2BV3 A;  4LFA E;  4JI6 E;  4U3B A;  4MYT A;  4URL A;  1E3P A;  2GS8 A;  4PRV A;  2AJ4 A;  4JI8 I;  4JG4 A;  3Q6M A;  1K47 A;  5C0X C;  1XXE A;  3GME A;  1H74 A;  3LNU A;  2ZM6 I;  4HAC B;  4FW3 A;  4UTG A;  4DR1 E;  2HK2 A;  4AM3 A;  1IBK E;  4DR5 E;  2UXC I;  1ZM3 A;  1XMQ I;  4LCG A;  3M7N G;  2V2V A;  5LMU I;  5DRP A;  4JV5 I;  1H72 C;  3LPS A;  5IWA I;  4BA1 A;  3P06 A;  4IZK A;  4FW4 A;  5K36 D;  2GQ0 A;  4YY3 E;  4ED4 A;  3V5R A;  1MX0 A;  2PNL A;  2V34 A;  2NN6 B;  5C0X E;  4K0K E;  4FW5 A;  1H7S A;  2HHH I;  4JI0 I;  2HKJ A;  2E5L I;  4B3M I;  3HKM A;  3P3G A;  1FWK A;  4DR7 I;  4JI2 E;  1I94 I;  4HAC A;  2VF3 A;  5IT9 Q;  4LF9 I;  3WU5 A;  2CG9 A;  2UUA I;  1XNQ E;  2PNZ B;  3T1Y I;  4YHH E;  2C38 B;  2V8P A;  4HXZ A;  4DR4 I;  4OO1 A;  5DNL A;  1B63 A;  4IFD B;  1Z0T A;  4B3S I;  1HNX I;  2PO0 B;  4JI1 I;  3WU3 A;  4AIM A;  3HUL A;  4USM A;  5DRO A;  4X66 I;  1Y6Z A;  3L7Z B;  4P7A A;  2NN6 D;  3B78 A;  4FWG A;  4DV7 E;  4DU8 A;  3J81 C;  4NXM I;  3J7A M;  4DR2 I;  2UUC I;  1ZM4 A;  1KKH A;  4LPF A;  4GQU A;  1XMO E;  3OTO I;  3HJC A;  2PO1 B;  2HFU A;  1Z0E A;  4KHP E;  5ELW A;  4DV6 I;  4X65 E;  2WP8 B;  5FLX Q;  4LF4 I;  4OO1 C;  2C38 A;  4GKJ I;  2Z5E A;  3Q1Q A;  4X62 E;  2VQE E;  2UXB I;  2DEI A;  3D4J A;  4HY1 A;  2NN6 F;  2PNM A;  1A6F A;  2XEX A;  3H1C A;  1YHC A;  2IOQ A;  2PO0 A;  3ZKD A;  4JI4 E; 
#chains in the Genus database with same CATH homology
 4FW3 A;  4J3D A;  2GO3 A;  4FW5 A;  3PS2 A;  4MQY A;  4OZE A;  2JT2 A;  3P3E A;  4OKG A;  2O3Z A;  4FW7 A;  4LCG A;  4LCH A;  5DRP A;  3U1Y A;  2VES A;  3NZK A;  4IS9 A;  3P3G A;  5DRQ A;  2J65 A;  4MDT A;  2IER A;  4FW6 A;  3PS3 A;  4ISA A;  3PS1 A;  4U3D A;  4U3B A;  5DRO A;  1P42 A;  2IES A;  4FW4 A;  2GO4 A;  3P76 A;  1XXE A;  1YHC A;  3P3C A;  3UHM A;  5DRR A;  1YH8 A;  4LCF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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